AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41836

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41836.t1 MTR_7g087400 98.140 484 9 0 1 484 1 484 0.0 962
MS.gene41836.t1 MTR_7g087370 85.685 489 41 1 1 489 1 460 0.0 817
MS.gene41836.t1 MTR_6g027200 73.265 490 125 3 6 489 9 498 0.0 729
MS.gene41836.t1 MTR_7g087410 72.043 465 129 1 24 487 25 489 0.0 708
MS.gene41836.t1 MTR_6g027190 71.224 490 131 3 3 489 4 486 0.0 679
MS.gene41836.t1 MTR_7g087410 72.000 400 111 1 89 487 1 400 0.0 608
MS.gene41836.t1 MTR_7g087430 73.116 398 106 1 89 485 1 398 0.0 589
MS.gene41836.t1 MTR_5g032720 49.590 488 238 3 1 480 1 488 3.33e-168 484
MS.gene41836.t1 MTR_3g099700 49.272 481 240 4 3 481 21 499 6.09e-162 468
MS.gene41836.t1 MTR_5g032750 47.992 473 244 2 11 481 17 489 3.41e-160 463
MS.gene41836.t1 MTR_8g069470 46.070 458 246 1 30 486 50 507 4.19e-150 438
MS.gene41836.t1 MTR_1g021740 46.957 460 241 2 18 474 21 480 6.49e-150 437
MS.gene41836.t1 MTR_1g100180 46.336 464 246 2 25 486 38 500 5.27e-147 430
MS.gene41836.t1 MTR_3g099720 47.479 476 243 3 3 472 10 484 8.96e-147 429
MS.gene41836.t1 MTR_2g022980 44.672 488 252 4 4 473 6 493 2.46e-143 421
MS.gene41836.t1 MTR_5g033100 47.046 457 237 2 31 482 57 513 1.83e-142 419
MS.gene41836.t1 MTR_4g048000 45.992 474 244 3 12 473 36 509 1.88e-141 416
MS.gene41836.t1 MTR_2g088400 45.359 474 247 3 12 473 24 497 5.30e-137 405
MS.gene41836.t1 MTR_6g047640 38.958 480 281 4 10 479 5 482 1.57e-116 352
MS.gene41836.t1 MTR_2g088400 43.836 438 234 3 12 437 24 461 2.36e-116 350
MS.gene41836.t1 MTR_6g047610 38.631 453 277 1 22 474 23 474 2.77e-114 346
MS.gene41836.t1 MTR_5g090290 41.542 467 264 3 20 479 31 495 3.21e-111 341
MS.gene41836.t1 MTR_6g047640 36.667 480 273 5 10 479 5 463 6.62e-109 331
MS.gene41836.t1 MTR_6g047590 36.947 452 284 1 22 473 23 473 3.61e-104 320
MS.gene41836.t1 MTR_8g063590 38.589 482 282 4 4 472 18 498 2.98e-103 318
MS.gene41836.t1 MTR_6g081410 34.968 469 300 3 14 478 10 477 5.27e-94 293
MS.gene41836.t1 MTR_6g081780 35.358 461 293 3 14 470 10 469 2.13e-90 284
MS.gene41836.t1 MTR_6g081300 34.773 463 296 4 25 483 5 465 5.92e-89 280
MS.gene41836.t1 MTR_7g082810 35.356 478 307 1 11 486 1 478 1.25e-87 277
MS.gene41836.t1 MTR_1g108810 34.130 460 295 4 12 465 14 471 1.83e-86 274
MS.gene41836.t1 MTR_5g087930 34.968 469 272 5 17 483 23 460 2.54e-84 268
MS.gene41836.t1 MTR_6g066380 35.666 443 278 4 33 470 31 471 8.11e-84 267
MS.gene41836.t1 MTR_6g081390 34.130 460 294 6 25 478 7 463 2.12e-83 265
MS.gene41836.t1 MTR_2g078930 37.609 460 273 3 13 461 20 476 9.59e-83 265
MS.gene41836.t1 MTR_2g079020 37.229 462 276 4 11 461 12 470 2.04e-82 264
MS.gene41836.t1 MTR_6g081400 33.700 454 292 6 25 472 10 460 3.89e-82 262
MS.gene41836.t1 MTR_6g081810 33.623 461 281 4 10 470 8 443 1.90e-81 260
MS.gene41836.t1 MTR_6g081240 33.860 443 287 4 25 463 5 445 1.47e-80 258
MS.gene41836.t1 MTR_8g106670 32.889 450 289 4 30 472 13 456 1.48e-78 253
MS.gene41836.t1 MTR_2g078970 36.842 456 274 4 17 461 12 464 1.71e-78 253
MS.gene41836.t1 MTR_2g078960 38.444 437 261 2 30 461 33 466 4.78e-78 252
MS.gene41836.t1 MTR_1g108840 32.845 478 311 4 1 470 8 483 7.33e-78 252
MS.gene41836.t1 MTR_6g004220 31.677 483 315 5 3 479 2 475 8.05e-76 246
MS.gene41836.t1 MTR_1g108990 32.548 467 313 1 6 470 1 467 9.96e-74 241
MS.gene41836.t1 MTR_6g004220 32.120 467 302 5 3 463 9 466 2.64e-73 240
MS.gene41836.t1 MTR_1g109060 33.546 471 302 3 6 470 1 466 6.12e-72 236
MS.gene41836.t1 MTR_1g109060 33.546 471 301 4 6 470 1 465 1.67e-70 233
MS.gene41836.t1 MTR_6g081310 32.833 466 273 8 25 470 5 450 7.52e-69 228
MS.gene41836.t1 MTR_7g082800 32.911 395 263 1 89 481 1 395 5.83e-67 221
MS.gene41836.t1 MTR_5g090280 33.412 425 238 9 89 481 1 412 4.73e-63 211
MS.gene41836.t1 MTR_3g111020 28.602 465 314 5 14 468 35 491 7.01e-63 214
MS.gene41836.t1 MTR_2g078990 36.897 290 181 1 174 461 4 293 5.30e-53 181
MS.gene41836.t1 MTR_5g067460 25.678 479 345 4 7 479 32 505 2.58e-52 186
MS.gene41836.t1 MTR_5g010830 27.416 445 313 4 30 468 65 505 4.14e-52 185
MS.gene41836.t1 MTR_1g101500 27.292 469 315 5 14 468 48 504 1.11e-51 184
MS.gene41836.t1 MTR_6g043810 25.852 499 342 6 1 483 1 487 4.73e-49 176
MS.gene41836.t1 MTR_0039s0080 26.840 462 324 5 27 480 35 490 5.35e-49 176
MS.gene41836.t1 MTR_6g043810 26.200 500 340 6 8 483 3 497 5.84e-49 176
MS.gene41836.t1 MTR_6g004220 29.397 398 266 5 3 394 9 397 6.88e-48 171
MS.gene41836.t1 MTR_4g027920 25.380 461 336 3 27 479 153 613 5.22e-46 169
MS.gene41836.t1 MTR_2g079030 41.026 195 115 0 267 461 319 513 3.59e-38 146
MS.gene41836.t1 MTR_6g088805 26.166 493 336 7 4 486 2 476 2.23e-36 140
MS.gene41836.t1 MTR_8g102430 26.562 448 277 9 30 460 23 435 2.63e-35 137
MS.gene41836.t1 MTR_5g011540 27.233 459 311 6 22 467 35 483 4.58e-33 132
MS.gene41836.t1 MTR_6g004220 27.607 326 215 6 3 322 9 319 7.90e-31 122
MS.gene41836.t1 MTR_2g435930 22.432 477 330 6 30 470 5 477 1.59e-30 124
MS.gene41836.t1 MTR_4g131290 50.909 55 27 0 102 156 13 67 3.00e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41836.t1 AT1G33110 65.984 488 162 3 2 485 4 491 0.0 672
MS.gene41836.t1 AT1G33100 63.900 482 173 1 5 485 7 488 0.0 657
MS.gene41836.t1 AT1G33090 62.887 485 176 3 5 485 7 491 0.0 631
MS.gene41836.t1 AT1G33080 62.397 484 178 2 5 484 7 490 0.0 626
MS.gene41836.t1 AT1G33080 63.931 463 163 2 5 463 7 469 0.0 613
MS.gene41836.t1 AT1G33110 67.000 400 128 3 2 397 4 403 0.0 552
MS.gene41836.t1 AT5G65380 50.737 475 231 3 2 474 9 482 3.42e-165 476
MS.gene41836.t1 AT5G44050 49.582 478 235 3 4 477 13 488 6.20e-165 475
MS.gene41836.t1 AT1G47530 46.458 480 250 3 1 474 1 479 1.84e-151 441
MS.gene41836.t1 AT4G00350 47.297 444 234 0 31 474 88 531 1.77e-150 440
MS.gene41836.t1 AT5G10420 47.510 482 246 5 4 482 12 489 2.00e-149 436
MS.gene41836.t1 AT1G12950 47.682 453 236 1 31 482 67 519 1.08e-144 425
MS.gene41836.t1 AT3G26590 47.297 444 233 1 31 473 45 488 1.39e-143 421
MS.gene41836.t1 AT4G25640 46.555 479 250 2 10 482 7 485 8.89e-141 414
MS.gene41836.t1 AT3G03620 44.255 470 261 1 15 483 21 490 1.45e-140 414
MS.gene41836.t1 AT3G03620 44.255 470 261 1 15 483 21 490 1.45e-140 414
MS.gene41836.t1 AT1G61890 45.770 461 244 2 19 473 31 491 2.09e-140 413
MS.gene41836.t1 AT4G25640 46.555 479 250 2 10 482 7 485 2.82e-140 413
MS.gene41836.t1 AT1G11670 44.332 494 254 4 1 473 1 494 6.05e-140 412
MS.gene41836.t1 AT5G38030 45.595 454 246 1 31 483 45 498 7.85e-139 409
MS.gene41836.t1 AT1G23300 45.969 459 243 2 31 488 44 498 2.25e-138 409
MS.gene41836.t1 AT5G17700 42.857 476 270 2 2 475 4 479 3.44e-138 407
MS.gene41836.t1 AT5G17700 42.857 476 270 2 2 475 4 479 3.44e-138 407
MS.gene41836.t1 AT3G21690 46.578 453 240 1 24 474 45 497 2.99e-136 403
MS.gene41836.t1 AT1G61890 44.658 468 251 3 5 464 15 482 8.88e-136 401
MS.gene41836.t1 AT1G47530 48.964 386 196 1 89 473 1 386 3.46e-131 386
MS.gene41836.t1 AT4G25640 47.319 429 220 2 10 432 7 435 1.64e-127 379
MS.gene41836.t1 AT3G26590 47.927 386 200 1 89 473 1 386 5.92e-126 372
MS.gene41836.t1 AT4G21910 40.202 495 271 5 3 473 5 498 2.02e-125 375
MS.gene41836.t1 AT4G21910 40.202 495 271 5 3 473 5 498 2.02e-125 375
MS.gene41836.t1 AT4G21910 42.082 461 260 3 19 473 41 500 2.22e-125 375
MS.gene41836.t1 AT4G21910 42.082 461 260 3 19 473 41 500 2.22e-125 375
MS.gene41836.t1 AT4G21903 44.131 426 233 4 51 473 73 496 2.61e-122 367
MS.gene41836.t1 AT1G61890 44.419 430 233 2 19 442 31 460 1.70e-119 359
MS.gene41836.t1 AT4G21903 42.825 446 243 6 51 489 73 513 3.16e-119 360
MS.gene41836.t1 AT3G59030 40.119 506 278 5 1 483 1 504 1.34e-117 355
MS.gene41836.t1 AT4G21903 44.845 388 210 3 89 473 1 387 3.75e-116 347
MS.gene41836.t1 AT5G17700 42.462 398 227 2 2 397 4 401 5.70e-110 332
MS.gene41836.t1 AT5G52450 35.054 465 296 2 25 485 20 482 2.69e-88 279
MS.gene41836.t1 AT2G34360 34.884 473 290 6 20 485 16 477 5.15e-86 273
MS.gene41836.t1 AT3G59030 37.890 417 235 4 1 394 1 416 1.57e-84 267
MS.gene41836.t1 AT1G73700 35.699 465 291 5 20 479 13 474 8.57e-83 264
MS.gene41836.t1 AT1G71140 33.696 460 295 3 17 470 12 467 4.64e-80 257
MS.gene41836.t1 AT1G66760 32.285 477 310 4 10 480 10 479 1.05e-75 246
MS.gene41836.t1 AT2G34360 31.723 476 267 4 16 485 12 435 2.97e-75 243
MS.gene41836.t1 AT1G15150 33.917 457 287 6 31 480 31 479 4.35e-74 242
MS.gene41836.t1 AT1G66760 32.609 460 297 4 10 463 10 462 2.26e-73 239
MS.gene41836.t1 AT1G15160 31.959 485 302 9 14 480 5 479 5.00e-72 236
MS.gene41836.t1 AT2G04080 33.404 473 293 9 14 470 2 468 7.08e-72 236
MS.gene41836.t1 AT1G66780 34.507 426 275 2 48 470 52 476 8.42e-72 236
MS.gene41836.t1 AT1G15170 33.402 482 302 8 1 470 1 475 2.52e-71 234
MS.gene41836.t1 AT2G04080 33.049 469 292 9 14 466 2 464 2.12e-69 229
MS.gene41836.t1 AT2G04070 32.759 464 301 5 16 470 7 468 2.61e-69 229
MS.gene41836.t1 AT2G04040 33.482 448 284 7 31 470 27 468 2.64e-69 229
MS.gene41836.t1 AT3G23560 32.340 470 307 2 3 461 2 471 1.58e-68 227
MS.gene41836.t1 AT2G04050 32.906 468 302 5 10 470 6 468 1.85e-67 224
MS.gene41836.t1 AT1G64820 30.717 446 301 4 30 470 28 470 9.77e-67 223
MS.gene41836.t1 AT3G23550 33.486 436 284 3 30 461 30 463 1.29e-66 222
MS.gene41836.t1 AT2G04100 31.637 452 299 4 25 470 24 471 1.40e-63 214
MS.gene41836.t1 AT1G15180 33.110 447 287 6 31 470 35 476 7.94e-63 212
MS.gene41836.t1 AT2G04090 31.556 450 290 6 31 470 30 471 2.22e-62 211
MS.gene41836.t1 AT2G04100 31.767 447 295 4 25 465 24 466 3.40e-62 210
MS.gene41836.t1 AT1G15150 34.511 368 229 5 120 480 1 363 3.66e-60 202
MS.gene41836.t1 AT1G15170 34.078 358 227 4 120 470 1 356 2.00e-58 197
MS.gene41836.t1 AT2G38510 25.108 462 339 3 27 483 2 461 1.21e-50 180
MS.gene41836.t1 AT1G66760 32.036 334 225 1 132 463 1 334 7.66e-50 174
MS.gene41836.t1 AT1G66760 30.435 391 259 4 10 394 10 393 3.26e-49 174
MS.gene41836.t1 AT3G23560 32.041 387 252 2 19 394 18 404 1.07e-47 170
MS.gene41836.t1 AT1G58340 24.722 449 328 3 30 472 57 501 7.51e-47 171
MS.gene41836.t1 AT4G29140 25.153 489 344 6 1 479 29 505 9.95e-42 156
MS.gene41836.t1 AT1G71870 23.658 503 346 7 7 483 7 497 3.18e-41 154
MS.gene41836.t1 AT5G19700 25.053 475 335 5 7 468 9 475 3.78e-40 151
MS.gene41836.t1 AT5G52050 24.886 438 287 6 55 467 59 479 5.46e-35 137
MS.gene41836.t1 AT4G23030 24.742 485 353 5 6 483 8 487 3.80e-33 132
MS.gene41836.t1 AT5G49130 25.667 487 334 8 11 478 12 489 5.99e-33 131
MS.gene41836.t1 AT1G15180 31.206 282 185 5 120 394 1 280 8.52e-29 118
MS.gene41836.t1 AT4G22790 25.000 456 308 10 50 489 49 486 8.24e-28 116
MS.gene41836.t1 AT2G04066 38.400 125 76 1 347 470 39 163 4.03e-24 99.4

Find 105 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTATTGGATGCCAAATT+TGG 0.094262 7.3:-21626448 MS.gene41836:CDS
TGGCCAAGTGCCACTAAAAT+TGG 0.210821 7.3:+21626699 None:intergenic
AAAACAAGCTGCCCCAAATT+TGG 0.237889 7.3:+21626435 None:intergenic
ATCAAGCTTTCTTTATCTTC+TGG 0.246424 7.3:-21626342 MS.gene41836:CDS
TGTGATTATCATAAGCATTA+TGG 0.251121 7.3:+21624378 None:intergenic
CATTAGCCACATCTGGATTT+GGG 0.265681 7.3:+21625721 None:intergenic
TGTTCTTGCTCTGTGCTTGT+AGG 0.270272 7.3:+21626583 None:intergenic
CCATTGATGCTCTTGCTATA+TGG 0.272797 7.3:-21626130 MS.gene41836:intron
GCATTAGCCACATCTGGATT+TGG 0.277971 7.3:+21625720 None:intergenic
CAATCCTTCATTGGTCATAT+TGG 0.293119 7.3:-21627331 MS.gene41836:CDS
CAGGTTTGCAAATGGTATTC+TGG 0.301200 7.3:-21627263 MS.gene41836:intron
TGTTGAAAACCTATTGAATA+TGG 0.301753 7.3:+21627375 None:intergenic
ATAGGCTGCTATTACCTAAT+TGG 0.305303 7.3:-21625319 MS.gene41836:CDS
TTGATGTCATTGCACCATTA+AGG 0.308624 7.3:+21626478 None:intergenic
AACAGGCCAAAGATCTTTAA+AGG 0.330427 7.3:+21626365 None:intergenic
GCTTATTGGATGCCAAATTT+GGG 0.332361 7.3:-21626447 MS.gene41836:CDS
TGCAATGACATCAATCCTTT+TGG 0.332957 7.3:-21626469 MS.gene41836:CDS
GAAAATATTGCACAAGTTGC+TGG 0.335153 7.3:-21626672 MS.gene41836:CDS
TGTAAGCAAGTCTTCCTCTT+AGG 0.344861 7.3:+21625751 None:intergenic
AGCATTTCAATTTGGTCAAT+AGG 0.345375 7.3:-21626648 MS.gene41836:CDS
GAGAAACCCTTCCATGTATC+AGG 0.346664 7.3:+21626396 None:intergenic
GTTTGGATTGGAATGTTGTT+TGG 0.348970 7.3:-21624415 MS.gene41836:CDS
AGGTTCAAGTTTGGCCTTAA+TGG 0.351235 7.3:-21626492 MS.gene41836:CDS
TATCTTCTGGAGCTATGTTA+TGG 0.352221 7.3:-21626329 MS.gene41836:intron
TCTTCTTCATTTGCAAGTTA+AGG 0.355036 7.3:-21625269 MS.gene41836:intron
TCTTGATATTCTTCTTTAGT+TGG 0.358461 7.3:+21624157 None:intergenic
TTGCTGGAAGCATTTCAATT+TGG 0.367403 7.3:-21626656 MS.gene41836:CDS
TTGGACACTGTTCATCAATA+TGG 0.379365 7.3:+21625665 None:intergenic
CTAGAAATCGTGTTAACAAA+TGG 0.385470 7.3:-21624223 MS.gene41836:CDS
TTGACTGTGAGGTTCAAGTT+TGG 0.387075 7.3:-21626501 MS.gene41836:CDS
GATAAAGAAAGCTTGATAAC+AGG 0.397818 7.3:+21626348 None:intergenic
TTGTTATGACTGTCCTAGTC+AGG 0.399000 7.3:-21627282 MS.gene41836:CDS
CAGGCCCTGCCATATTCAAT+AGG 0.402161 7.3:-21627384 MS.gene41836:CDS
GGCTCTTCTTCCTCCTCTGA+AGG 0.408718 7.3:+21627454 None:intergenic
CCATATAGCAAGAGCATCAA+TGG 0.415111 7.3:+21626130 None:intergenic
CTCCGATAGGAATACCAATT+AGG 0.416553 7.3:+21625305 None:intergenic
TTGAAAATTGTAGTTGGGTA+TGG 0.421860 7.3:-21626859 MS.gene41836:intron
CCAACTGCATTAGCCACATC+TGG 0.423816 7.3:+21625714 None:intergenic
AAGGGCATAAGCAGCTAATT+CGG 0.440329 7.3:+21627303 None:intergenic
GTAGTTGCTCAATCCTTCAT+TGG 0.440406 7.3:-21627340 MS.gene41836:CDS
AAGAAGAGCCACTAAGGAAA+AGG 0.447419 7.3:-21627441 MS.gene41836:CDS
TTTGCAGCCTCAACATCAAT+GGG 0.465185 7.3:-21626010 MS.gene41836:intron
ACACTATGTGGACAAGCATA+TGG 0.467239 7.3:-21626822 MS.gene41836:CDS
ATAGGTGTTTCTGTTGGAGC+TGG 0.468391 7.3:-21625370 MS.gene41836:intron
GAAAACCTATTGAATATGGC+AGG 0.470460 7.3:+21627379 None:intergenic
GCTCTTCTTCCTCCTCTGAA+GGG 0.476165 7.3:+21627455 None:intergenic
TTGATCTTTCTGTTCCTAAG+AGG 0.477472 7.3:-21625765 MS.gene41836:CDS
AAGTGCCACTAAAATTGGTT+TGG 0.478153 7.3:+21626704 None:intergenic
GAGTGTATCTTCAAAGATCA+TGG 0.479506 7.3:-21626776 MS.gene41836:CDS
GTGTTTCTGTTGGAGCTGGC+TGG 0.479528 7.3:-21625366 MS.gene41836:CDS
AGCCACTAAGGAAAAGGGTA+TGG 0.482191 7.3:-21627435 MS.gene41836:CDS
TAGAAATCGTGTTAACAAAT+GGG 0.484770 7.3:-21624222 MS.gene41836:CDS
AGTGTCCAACCTGTGCTCTC+TGG 0.488293 7.3:-21625651 MS.gene41836:intron
TTGGCATCCAATAAGCCAAA+AGG 0.492999 7.3:+21626454 None:intergenic
TAATCACATTTAAGACTGAC+TGG 0.493785 7.3:-21624363 MS.gene41836:CDS
GCAAAACAATATGATATGCT+TGG 0.495199 7.3:-21626798 MS.gene41836:CDS
GGGAAGAAAGCAAGAAATTG+TGG 0.497231 7.3:-21627414 MS.gene41836:CDS
AGGAGGAAGAAGAGCCACTA+AGG 0.500928 7.3:-21627447 MS.gene41836:CDS
AAGAAATTGTGGATAGTAGC+AGG 0.502559 7.3:-21627403 MS.gene41836:CDS
TACCTAATTGGTATTCCTAT+CGG 0.507862 7.3:-21625307 MS.gene41836:CDS
AGAAGAGCCACTAAGGAAAA+GGG 0.507893 7.3:-21627440 MS.gene41836:CDS
TGAACCAATATGACCAATGA+AGG 0.509207 7.3:+21627327 None:intergenic
TTGGTTTCTTCGCTGCAGCT+AGG 0.512378 7.3:-21625968 MS.gene41836:intron
TGACAAAATGTCCTGATACA+TGG 0.517890 7.3:-21626407 MS.gene41836:CDS
TTTCCCACCCATTGATGTTG+AGG 0.520512 7.3:+21626003 None:intergenic
ATTCCTATCGGAGTTGTGCT+TGG 0.524605 7.3:-21625295 MS.gene41836:CDS
TTGTGAATAGGTGTTTCTGT+TGG 0.527931 7.3:-21625376 MS.gene41836:intron
GTCCTAGTCAGGTTTGCAAA+TGG 0.528064 7.3:-21627271 MS.gene41836:CDS
CCAGATGTGGCTAATGCAGT+TGG 0.534123 7.3:-21625714 MS.gene41836:CDS
TGTTAACAAATGGGCTGTAG+TGG 0.541289 7.3:-21624213 MS.gene41836:CDS
GATTCTTCTAACAGGGAACA+TGG 0.541639 7.3:-21626168 MS.gene41836:CDS
ATGAATCAAACAACACATCA+AGG 0.547424 7.3:-21624184 MS.gene41836:CDS
CAAGAATAGCACAAATCCAA+TGG 0.555748 7.3:+21625785 None:intergenic
TAAGACTGACTGGGACAAGC+AGG 0.560914 7.3:-21624353 MS.gene41836:intron
GTTGTAGCATATGTCAACAT+AGG 0.569004 7.3:-21625337 MS.gene41836:CDS
GTTAGGGTGTCAAATGAACT+AGG 0.580896 7.3:-21625867 MS.gene41836:CDS
AAAATGTCCTGATACATGGA+AGG 0.587310 7.3:-21626403 MS.gene41836:CDS
GTGTCAAATGAACTAGGCAG+AGG 0.587372 7.3:-21625861 MS.gene41836:CDS
TACCATTTGCAAACCTGACT+AGG 0.588271 7.3:+21627269 None:intergenic
ATTAGCCACATCTGGATTTG+GGG 0.588466 7.3:+21625722 None:intergenic
AATTGGAAGAAGAAGAATTG+AGG 0.589185 7.3:+21626737 None:intergenic
GCAGCCTCAACATCAATGGG+TGG 0.590413 7.3:-21626007 MS.gene41836:intron
GCAGCATCAAAACCCTTCAG+AGG 0.592540 7.3:-21627467 MS.gene41836:CDS
GCCACTAAGGAAAAGGGTAT+GGG 0.595578 7.3:-21627434 MS.gene41836:CDS
TTACCAAGCACAACTCCGAT+AGG 0.598268 7.3:+21625292 None:intergenic
TAGCTGCAGCGAAGAAACCA+AGG 0.602642 7.3:+21625970 None:intergenic
CAGCCTCAACATCAATGGGT+GGG 0.609170 7.3:-21626006 MS.gene41836:CDS
CTTATTGGATGCCAAATTTG+GGG 0.612153 7.3:-21626446 MS.gene41836:CDS
TGGGAAATGATGATAGCCCT+TGG 0.617562 7.3:-21625987 MS.gene41836:CDS
TGACTAGGACAGTCATAACA+AGG 0.618469 7.3:+21627284 None:intergenic
GCATCAAAACCCTTCAGAGG+AGG 0.620658 7.3:-21627464 MS.gene41836:CDS
AAATATTTACCAGAGAGCAC+AGG 0.621828 7.3:+21625642 None:intergenic
ACTAGGCAGAGGGAGTTCCA+AGG 0.626189 7.3:-21625850 MS.gene41836:CDS
TTTCACCCCAAATCCAGATG+TGG 0.637534 7.3:-21625727 MS.gene41836:CDS
TGTCAAATGAACTAGGCAGA+GGG 0.643173 7.3:-21625860 MS.gene41836:CDS
TTGAAATTGAAACTGCTGCA+AGG 0.648955 7.3:+21626547 None:intergenic
AAATGTCCTGATACATGGAA+GGG 0.649772 7.3:-21626402 MS.gene41836:CDS
AATCACATTTAAGACTGACT+GGG 0.658771 7.3:-21624362 MS.gene41836:CDS
AAAACCTATTGAATATGGCA+GGG 0.658833 7.3:+21627380 None:intergenic
ATTTACCAGAGAGCACAGGT+TGG 0.672429 7.3:+21625646 None:intergenic
TGTGAGCACTGTTATGACAA+TGG 0.674257 7.3:+21625815 None:intergenic
AGCTGCAGCGAAGAAACCAA+GGG 0.675016 7.3:+21625971 None:intergenic
GACTAGGACAGTCATAACAA+GGG 0.709723 7.3:+21627285 None:intergenic
AGTGCATTAGAAACACTATG+TGG 0.716160 7.3:-21626834 MS.gene41836:CDS
AATATGGAGAATGATAACAA+AGG 0.716405 7.3:+21625681 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTTACTAAATTACAT+AGG - chr7.3:21626830-21626849 MS.gene41836:CDS 10.0%
!! TATATTTGTCAAAAAATTAA+TGG + chr7.3:21627117-21627136 None:intergenic 10.0%
!! TTTATATATAAACAAAGTAA+TGG + chr7.3:21626858-21626877 None:intergenic 10.0%
!! ATATATACCAAATAGAAAAT+GGG - chr7.3:21627134-21627153 MS.gene41836:intron 15.0%
!! ATGCTTAAAATTATAAGAAA+CGG + chr7.3:21627392-21627411 None:intergenic 15.0%
!! TAATTCATTTATCATTTACA+TGG - chr7.3:21626425-21626444 MS.gene41836:CDS 15.0%
!! TATATATACCAAATAGAAAA+TGG - chr7.3:21627133-21627152 MS.gene41836:intron 15.0%
!!! TAATAACATATGTATTTTAC+AGG - chr7.3:21627416-21627435 MS.gene41836:CDS 15.0%
!!! TCAATTTTTAAGATTATGTA+TGG - chr7.3:21625389-21625408 MS.gene41836:intron 15.0%
!! AATGATTAAAGAGATATTGT+TGG - chr7.3:21627204-21627223 MS.gene41836:intron 20.0%
!! ATAACATATCAACATTACAT+TGG + chr7.3:21626809-21626828 None:intergenic 20.0%
!!! ACAACATTTTTAGATGAATT+TGG + chr7.3:21626276-21626295 None:intergenic 20.0%
!!! ATTTTAGTCCTTAAGATTAT+AGG - chr7.3:21626118-21626137 MS.gene41836:intron 20.0%
! AATATGGAGAATGATAACAA+AGG + chr7.3:21625993-21626012 None:intergenic 25.0%
! ACCTATCATTTATGAAATCA+TGG - chr7.3:21627007-21627026 MS.gene41836:intron 25.0%
! CTAAAAATGTTGTTGTGAAT+AGG - chr7.3:21626283-21626302 MS.gene41836:intron 25.0%
! CTATAATACAATTGTGATTG+AGG + chr7.3:21624517-21624536 None:intergenic 25.0%
! CTATAATACTATTGCAATTG+AGG + chr7.3:21624647-21624666 None:intergenic 25.0%
! CTCTCTTTAAATTATATACG+TGG + chr7.3:21627162-21627181 None:intergenic 25.0%
! CTTTAATCATTATGCGATAT+AGG + chr7.3:21627195-21627214 None:intergenic 25.0%
! GATGAAAAAATATGGTTGAT+AGG + chr7.3:21626736-21626755 None:intergenic 25.0%
! GCAAATTGAAAATTGTAGTT+GGG - chr7.3:21624807-21624826 MS.gene41836:intron 25.0%
! TAGAAATCGTGTTAACAAAT+GGG - chr7.3:21627449-21627468 MS.gene41836:CDS 25.0%
! TCACGTTAAATTCTATTCTA+AGG + chr7.3:21626986-21627005 None:intergenic 25.0%
! TCCATGATTTCATAAATGAT+AGG + chr7.3:21627011-21627030 None:intergenic 25.0%
! TGCAAATTGAAAATTGTAGT+TGG - chr7.3:21624806-21624825 MS.gene41836:intron 25.0%
! TGTGATTATCATAAGCATTA+TGG + chr7.3:21627296-21627315 None:intergenic 25.0%
! TGTTGAAAACCTATTGAATA+TGG + chr7.3:21624299-21624318 None:intergenic 25.0%
!! ACTTTTACAGTCTTGAAATA+TGG - chr7.3:21625466-21625485 MS.gene41836:intron 25.0%
!! ATATCAACATTACATTGGTT+AGG + chr7.3:21626804-21626823 None:intergenic 25.0%
!! GGTTTGGTAAAAATGTAAAT+TGG + chr7.3:21624954-21624973 None:intergenic 25.0%
!! GTTAAATTCTATTCTAAGGA+CGG + chr7.3:21626982-21627001 None:intergenic 25.0%
!! GTTTGTAATCAAAGTTTGTT+TGG - chr7.3:21625411-21625430 MS.gene41836:intron 25.0%
!! TATCAACATTACATTGGTTA+GGG + chr7.3:21626803-21626822 None:intergenic 25.0%
!! TTCAATAGGTTTTCAACATT+TGG - chr7.3:21624301-21624320 MS.gene41836:intron 25.0%
!! TTTTACCAAACCAATTTTAG+TGG - chr7.3:21624962-21624981 MS.gene41836:intron 25.0%
!!! ATTACATTTTTTGCAGTGTT+AGG - chr7.3:21625787-21625806 MS.gene41836:CDS 25.0%
!!! CAATTCATGTTTTTATGTCA+TGG - chr7.3:21625144-21625163 MS.gene41836:intron 25.0%
!!! CTTTTTGGTAATTATGTCAT+TGG - chr7.3:21626633-21626652 MS.gene41836:CDS 25.0%
!!! TTACATTTTTTGCAGTGTTA+GGG - chr7.3:21625788-21625807 MS.gene41836:CDS 25.0%
AAAACCTATTGAATATGGCA+GGG + chr7.3:21624294-21624313 None:intergenic 30.0%
AAATTGGATTTGGATAAGCA+AGG + chr7.3:21626779-21626798 None:intergenic 30.0%
AATTGGAAGAAGAAGAATTG+AGG + chr7.3:21624937-21624956 None:intergenic 30.0%
ACAGACAACTAATATGTGTT+GGG - chr7.3:21626678-21626697 MS.gene41836:CDS 30.0%
AGCATTTCAATTTGGTCAAT+AGG - chr7.3:21625023-21625042 MS.gene41836:intron 30.0%
ATAAGACTAACATGAAGCTA+TGG - chr7.3:21625441-21625460 MS.gene41836:intron 30.0%
ATCAAGCTTTCTTTATCTTC+TGG - chr7.3:21625329-21625348 MS.gene41836:CDS 30.0%
ATGAATCAAACAACACATCA+AGG - chr7.3:21627487-21627506 MS.gene41836:CDS 30.0%
CAATTGTATTTGTGACATCA+AGG + chr7.3:21624550-21624569 None:intergenic 30.0%
CTAGAAATCGTGTTAACAAA+TGG - chr7.3:21627448-21627467 MS.gene41836:CDS 30.0%
CTGAAGGAGAATATTAGATA+AGG + chr7.3:21626155-21626174 None:intergenic 30.0%
GATTGTGATTTAAGAGATTG+AGG + chr7.3:21624447-21624466 None:intergenic 30.0%
GCAAAACAATATGATATGCT+TGG - chr7.3:21624873-21624892 MS.gene41836:intron 30.0%
TACCTAATTGGTATTCCTAT+CGG - chr7.3:21626364-21626383 MS.gene41836:CDS 30.0%
TCTTCTTCATTTGCAAGTTA+AGG - chr7.3:21626402-21626421 MS.gene41836:CDS 30.0%
TCTTGTCAGTACTAAATGTT+AGG - chr7.3:21625760-21625779 MS.gene41836:CDS 30.0%
TTAGTCCTTAAGATTATAGG+TGG - chr7.3:21626121-21626140 MS.gene41836:intron 30.0%
TTGAAAATTGTAGTTGGGTA+TGG - chr7.3:21624812-21624831 MS.gene41836:intron 30.0%
TTGTATTTGTGACAGACATA+TGG + chr7.3:21624680-21624699 None:intergenic 30.0%
! AATCACATTTAAGACTGACT+GGG - chr7.3:21627309-21627328 MS.gene41836:CDS 30.0%
! ACCAAAAAGTGTAGTTGAAA+GGG + chr7.3:21626622-21626641 None:intergenic 30.0%
! CTTGTGCAATATTTTCATCT+TGG + chr7.3:21624995-21625014 None:intergenic 30.0%
! GATAAAGAAAGCTTGATAAC+AGG + chr7.3:21625326-21625345 None:intergenic 30.0%
! GTTTTCAACATTTGGTATCA+TGG - chr7.3:21624309-21624328 MS.gene41836:intron 30.0%
! TAATCACATTTAAGACTGAC+TGG - chr7.3:21627308-21627327 MS.gene41836:CDS 30.0%
! TACCAAAAAGTGTAGTTGAA+AGG + chr7.3:21626623-21626642 None:intergenic 30.0%
! TTACATTGGTTAGGGTAAAT+TGG + chr7.3:21626795-21626814 None:intergenic 30.0%
! TTGTTGTTAGTGTAATCTGA+AGG + chr7.3:21626171-21626190 None:intergenic 30.0%
!! ATAGCTTCATGTTAGTCTTA+TGG + chr7.3:21625442-21625461 None:intergenic 30.0%
!! ATATTGTTGGTGCTGAAATT+TGG - chr7.3:21627217-21627236 MS.gene41836:intron 30.0%
!! TTTTGGCCTTTAAAGATCTT+TGG - chr7.3:21625300-21625319 MS.gene41836:CDS 30.0%
!!! AAATTTGGTCACTTTTTGCA+GGG - chr7.3:21627232-21627251 MS.gene41836:intron 30.0%
!!! ACAGTTTTGATTCTTCTAAC+AGG - chr7.3:21625495-21625514 MS.gene41836:intron 30.0%
!!! CAGTTTTGATTCTTCTAACA+GGG - chr7.3:21625496-21625515 MS.gene41836:intron 30.0%
AAAATGTCCTGATACATGGA+AGG - chr7.3:21625268-21625287 MS.gene41836:intron 35.0%
AAATGTCCTGATACATGGAA+GGG - chr7.3:21625269-21625288 MS.gene41836:intron 35.0%
AACAGGCCAAAGATCTTTAA+AGG + chr7.3:21625309-21625328 None:intergenic 35.0%
AAGAAATTGTGGATAGTAGC+AGG - chr7.3:21624268-21624287 MS.gene41836:intron 35.0%
ACCAATGACTAATCTCTTAC+AGG - chr7.3:21626565-21626584 MS.gene41836:CDS 35.0%
ACTTGCCACCTATAATCTTA+AGG + chr7.3:21626129-21626148 None:intergenic 35.0%
AGTGCATTAGAAACACTATG+TGG - chr7.3:21624837-21624856 MS.gene41836:intron 35.0%
ATAGGCTGCTATTACCTAAT+TGG - chr7.3:21626352-21626371 MS.gene41836:CDS 35.0%
ATCTAACTTACCACCTTTGT+TGG - chr7.3:21626703-21626722 MS.gene41836:CDS 35.0%
ATGGTTAGACATTTCATCCA+TGG + chr7.3:21627052-21627071 None:intergenic 35.0%
CAAGAATAGCACAAATCCAA+TGG + chr7.3:21625889-21625908 None:intergenic 35.0%
CAATCCTTCATTGGTCATAT+TGG - chr7.3:21624340-21624359 MS.gene41836:intron 35.0%
CAATGACTAATCTCTTACAG+GGG - chr7.3:21626567-21626586 MS.gene41836:CDS 35.0%
CACAGACAACTAATATGTGT+TGG - chr7.3:21626677-21626696 MS.gene41836:CDS 35.0%
CAGACAACTAATATGTGTTG+GGG - chr7.3:21626679-21626698 MS.gene41836:CDS 35.0%
CCAATGACTAATCTCTTACA+GGG - chr7.3:21626566-21626585 MS.gene41836:CDS 35.0%
CTTATTGGATGCCAAATTTG+GGG - chr7.3:21625225-21625244 MS.gene41836:intron 35.0%
GAAAACCTATTGAATATGGC+AGG + chr7.3:21624295-21624314 None:intergenic 35.0%
GAAAATATTGCACAAGTTGC+TGG - chr7.3:21624999-21625018 MS.gene41836:intron 35.0%
GACTCGTCGATGAAAAAATA+TGG + chr7.3:21626744-21626763 None:intergenic 35.0%
GAGATCCCACTAAATATAGT+CGG + chr7.3:21626599-21626618 None:intergenic 35.0%
GAGTGTATCTTCAAAGATCA+TGG - chr7.3:21624895-21624914 MS.gene41836:intron 35.0%
GCTTATTGGATGCCAAATTT+GGG - chr7.3:21625224-21625243 MS.gene41836:intron 35.0%
GTCTGTCACAAATACAATTG+CGG - chr7.3:21624683-21624702 MS.gene41836:intron 35.0%
GTTGTAGCATATGTCAACAT+AGG - chr7.3:21626334-21626353 MS.gene41836:CDS 35.0%
TAAAACTCATGTCAGTACCA+TGG - chr7.3:21627032-21627051 MS.gene41836:intron 35.0%
TATTGCAATTGAGGTAGCAT+CGG + chr7.3:21624638-21624657 None:intergenic 35.0%
TCTAACTTACCACCTTTGTT+GGG - chr7.3:21626704-21626723 MS.gene41836:CDS 35.0%
TGAACCAATATGACCAATGA+AGG + chr7.3:21624347-21624366 None:intergenic 35.0%
TGACAAAATGTCCTGATACA+TGG - chr7.3:21625264-21625283 MS.gene41836:intron 35.0%
TGGTTAGGGTAAATTGGATT+TGG + chr7.3:21626789-21626808 None:intergenic 35.0%
TTGAAATTGAAACTGCTGCA+AGG + chr7.3:21625127-21625146 None:intergenic 35.0%
TTGATCTTTCTGTTCCTAAG+AGG - chr7.3:21625906-21625925 MS.gene41836:intron 35.0%
TTGATGTCATTGCACCATTA+AGG + chr7.3:21625196-21625215 None:intergenic 35.0%
TTGGACACTGTTCATCAATA+TGG + chr7.3:21626009-21626028 None:intergenic 35.0%
! AAATATTTACCAGAGAGCAC+AGG + chr7.3:21626032-21626051 None:intergenic 35.0%
! AAGTGCCACTAAAATTGGTT+TGG + chr7.3:21624970-21624989 None:intergenic 35.0%
! AATGGAAAATTTTGCTGCCT+TGG + chr7.3:21625841-21625860 None:intergenic 35.0%
! ATCTCACCGACTATATTTAG+TGG - chr7.3:21626590-21626609 MS.gene41836:CDS 35.0%
! ATGGAAGGGTTTCTCATTTT+TGG - chr7.3:21625283-21625302 MS.gene41836:CDS 35.0%
! CCAAAAAGTGTAGTTGAAAG+GGG + chr7.3:21626621-21626640 None:intergenic 35.0%
! CGGTTGATACAAATGGTAAA+TGG + chr7.3:21627071-21627090 None:intergenic 35.0%
! GTTTGGATTGGAATGTTGTT+TGG - chr7.3:21627256-21627275 MS.gene41836:intron 35.0%
! TCTCACCGACTATATTTAGT+GGG - chr7.3:21626591-21626610 MS.gene41836:CDS 35.0%
! TGCAATGACATCAATCCTTT+TGG - chr7.3:21625202-21625221 MS.gene41836:intron 35.0%
! TGTAAGAGATTAGTCATTGG+TGG + chr7.3:21626566-21626585 None:intergenic 35.0%
! TTGTGAATAGGTGTTTCTGT+TGG - chr7.3:21626295-21626314 MS.gene41836:intron 35.0%
!! AAACCAATTTTAGTGGCACT+TGG - chr7.3:21624969-21624988 MS.gene41836:intron 35.0%
!! TATCTTCTGGAGCTATGTTA+TGG - chr7.3:21625342-21625361 MS.gene41836:CDS 35.0%
!! TTGCTGGAAGCATTTCAATT+TGG - chr7.3:21625015-21625034 MS.gene41836:intron 35.0%
!!! CATCAATCCTTTTGGCTTAT+TGG - chr7.3:21625210-21625229 MS.gene41836:intron 35.0%
!!! GAAATTTGGTCACTTTTTGC+AGG - chr7.3:21627231-21627250 MS.gene41836:intron 35.0%
AAAACAAGCTGCCCCAAATT+TGG + chr7.3:21625239-21625258 None:intergenic 40.0%
AAGAAGAGCCACTAAGGAAA+AGG - chr7.3:21624230-21624249 MS.gene41836:CDS 40.0%
AATATTCCGTCTCGCTGTTA+CGG - chr7.3:21626242-21626261 MS.gene41836:intron 40.0%
ACAAATACAATTGCGGTCGA+TGG - chr7.3:21624690-21624709 MS.gene41836:intron 40.0%
ACACTATGTGGACAAGCATA+TGG - chr7.3:21624849-21624868 MS.gene41836:intron 40.0%
AGAAGAGCCACTAAGGAAAA+GGG - chr7.3:21624231-21624250 MS.gene41836:CDS 40.0%
ATTAGCCACATCTGGATTTG+GGG + chr7.3:21625952-21625971 None:intergenic 40.0%
CAGGTTTGCAAATGGTATTC+TGG - chr7.3:21624408-21624427 MS.gene41836:CDS 40.0%
CATTAGCCACATCTGGATTT+GGG + chr7.3:21625953-21625972 None:intergenic 40.0%
CCATTTGTATCAACCGCAAT+TGG - chr7.3:21627075-21627094 MS.gene41836:intron 40.0%
CTAACTTACCACCTTTGTTG+GGG - chr7.3:21626705-21626724 MS.gene41836:CDS 40.0%
CTCCGATAGGAATACCAATT+AGG + chr7.3:21626369-21626388 None:intergenic 40.0%
GACTAGGACAGTCATAACAA+GGG + chr7.3:21624389-21624408 None:intergenic 40.0%
GATGTTTCGCACTAATACGA+TGG + chr7.3:21626544-21626563 None:intergenic 40.0%
GATTCTTCTAACAGGGAACA+TGG - chr7.3:21625503-21625522 MS.gene41836:intron 40.0%
GGCTTATTGGATGCCAAATT+TGG - chr7.3:21625223-21625242 MS.gene41836:intron 40.0%
GGGAAGAAAGCAAGAAATTG+TGG - chr7.3:21624257-21624276 MS.gene41836:intron 40.0%
GTAGTTGCTCAATCCTTCAT+TGG - chr7.3:21624331-21624350 MS.gene41836:intron 40.0%
TAACAGCGAGACGGAATATT+TGG + chr7.3:21626242-21626261 None:intergenic 40.0%
TACCATTTGCAAACCTGACT+AGG + chr7.3:21624405-21624424 None:intergenic 40.0%
TGACTAGGACAGTCATAACA+AGG + chr7.3:21624390-21624409 None:intergenic 40.0%
TGTAAGCAAGTCTTCCTCTT+AGG + chr7.3:21625923-21625942 None:intergenic 40.0%
TGTCAAATGAACTAGGCAGA+GGG - chr7.3:21625811-21625830 MS.gene41836:CDS 40.0%
TTGGCATCCAATAAGCCAAA+AGG + chr7.3:21625220-21625239 None:intergenic 40.0%
TTGTATCAACCGCAATTGGT+TGG - chr7.3:21627079-21627098 MS.gene41836:intron 40.0%
TTGTTATGACTGTCCTAGTC+AGG - chr7.3:21624389-21624408 MS.gene41836:CDS 40.0%
TTTGCAGCCTCAACATCAAT+GGG - chr7.3:21625661-21625680 MS.gene41836:CDS 40.0%
! AAGGGCATAAGCAGCTAATT+CGG + chr7.3:21624371-21624390 None:intergenic 40.0%
! CCAATTGCGGTTGATACAAA+TGG + chr7.3:21627078-21627097 None:intergenic 40.0%
! CCATTGATGCTCTTGCTATA+TGG - chr7.3:21625541-21625560 MS.gene41836:intron 40.0%
! CCCCTTTCAACTACACTTTT+TGG - chr7.3:21626618-21626637 MS.gene41836:CDS 40.0%
! CCCTGTAAGAGATTAGTCAT+TGG + chr7.3:21626569-21626588 None:intergenic 40.0%
! CGTGGATCCCATTTTCTATT+TGG + chr7.3:21627144-21627163 None:intergenic 40.0%
! GTGCTCACATCATTTTCCAT+TGG - chr7.3:21625870-21625889 MS.gene41836:CDS 40.0%
! GTTAGGGTGTCAAATGAACT+AGG - chr7.3:21625804-21625823 MS.gene41836:CDS 40.0%
! TGTGAGCACTGTTATGACAA+TGG + chr7.3:21625859-21625878 None:intergenic 40.0%
! TTGACTGTGAGGTTCAAGTT+TGG - chr7.3:21625170-21625189 MS.gene41836:intron 40.0%
! TTTTGCAGCCTCAACATCAA+TGG - chr7.3:21625660-21625679 MS.gene41836:CDS 40.0%
!! AAGGGTTTTGATGCTGCAAA+AGG + chr7.3:21624201-21624220 None:intergenic 40.0%
!! ACCATTGATTTGAGATCCGA+CGG - chr7.3:21626215-21626234 MS.gene41836:intron 40.0%
!! AGGTTCAAGTTTGGCCTTAA+TGG - chr7.3:21625179-21625198 MS.gene41836:intron 40.0%
!! CCATATAGCAAGAGCATCAA+TGG + chr7.3:21625544-21625563 None:intergenic 40.0%
!! TGTTAACAAATGGGCTGTAG+TGG - chr7.3:21627458-21627477 MS.gene41836:CDS 40.0%
!! TTTTTGCAGGGTGTTTGGAT+TGG - chr7.3:21627244-21627263 MS.gene41836:intron 40.0%
ACCGTCGGATCTCAAATCAA+TGG + chr7.3:21626219-21626238 None:intergenic 45.0%
AGACGGAATATTTGGACCGT+CGG + chr7.3:21626234-21626253 None:intergenic 45.0%
AGCCACTAAGGAAAAGGGTA+TGG - chr7.3:21624236-21624255 MS.gene41836:CDS 45.0%
ATTCCTATCGGAGTTGTGCT+TGG - chr7.3:21626376-21626395 MS.gene41836:CDS 45.0%
CCAACCAATCCAACCAATTG+CGG + chr7.3:21627091-21627110 None:intergenic 45.0%
GAGAAACCCTTCCATGTATC+AGG + chr7.3:21625278-21625297 None:intergenic 45.0%
GCATTAGCCACATCTGGATT+TGG + chr7.3:21625954-21625973 None:intergenic 45.0%
GTCCTAGTCAGGTTTGCAAA+TGG - chr7.3:21624400-21624419 MS.gene41836:CDS 45.0%
GTGTCAAATGAACTAGGCAG+AGG - chr7.3:21625810-21625829 MS.gene41836:CDS 45.0%
TCAACCGCAATTGGTTGGAT+TGG - chr7.3:21627084-21627103 MS.gene41836:intron 45.0%
TGGGAAATGATGATAGCCCT+TGG - chr7.3:21625684-21625703 MS.gene41836:CDS 45.0%
TGTTCTTGCTCTGTGCTTGT+AGG + chr7.3:21625091-21625110 None:intergenic 45.0%
TTACCAAGCACAACTCCGAT+AGG + chr7.3:21626382-21626401 None:intergenic 45.0%
TTTCACCCCAAATCCAGATG+TGG - chr7.3:21625944-21625963 MS.gene41836:intron 45.0%
TTTCCCACCCATTGATGTTG+AGG + chr7.3:21625671-21625690 None:intergenic 45.0%
! ATAGGTGTTTCTGTTGGAGC+TGG - chr7.3:21626301-21626320 MS.gene41836:intron 45.0%
! ATTTACCAGAGAGCACAGGT+TGG + chr7.3:21626028-21626047 None:intergenic 45.0%
! GCCACTAAGGAAAAGGGTAT+GGG - chr7.3:21624237-21624256 MS.gene41836:intron 45.0%
! TCCCATACCCTTTTCCTTAG+TGG + chr7.3:21624241-21624260 None:intergenic 45.0%
! TGGCCAAGTGCCACTAAAAT+TGG + chr7.3:21624975-21624994 None:intergenic 45.0%
!! TGTCATGGCTTTTGACTGTG+AGG - chr7.3:21625159-21625178 MS.gene41836:intron 45.0%
!!! GTCACTTTTTGCAGGGTGTT+TGG - chr7.3:21627239-21627258 MS.gene41836:intron 45.0%
AGCTGCAGCGAAGAAACCAA+GGG + chr7.3:21625703-21625722 None:intergenic 50.0%
AGGAGGAAGAAGAGCCACTA+AGG - chr7.3:21624224-21624243 MS.gene41836:CDS 50.0%
CAGCCTCAACATCAATGGGT+GGG - chr7.3:21625665-21625684 MS.gene41836:CDS 50.0%
CAGGCCCTGCCATATTCAAT+AGG - chr7.3:21624287-21624306 MS.gene41836:intron 50.0%
CCAACTGCATTAGCCACATC+TGG + chr7.3:21625960-21625979 None:intergenic 50.0%
CCAGATGTGGCTAATGCAGT+TGG - chr7.3:21625957-21625976 MS.gene41836:intron 50.0%
GATAGGAGAGACCCCAACAA+AGG + chr7.3:21626719-21626738 None:intergenic 50.0%
GCAGCATCAAAACCCTTCAG+AGG - chr7.3:21624204-21624223 MS.gene41836:CDS 50.0%
GCATCAAAACCCTTCAGAGG+AGG - chr7.3:21624207-21624226 MS.gene41836:CDS 50.0%
GCTCTTCTTCCTCCTCTGAA+GGG + chr7.3:21624219-21624238 None:intergenic 50.0%
TAAGACTGACTGGGACAAGC+AGG - chr7.3:21627318-21627337 MS.gene41836:CDS 50.0%
TAGCTGCAGCGAAGAAACCA+AGG + chr7.3:21625704-21625723 None:intergenic 50.0%
TCTCTACCGTAACAGCGAGA+CGG + chr7.3:21626251-21626270 None:intergenic 50.0%
TTGCGATCGAGTGCAGTGTA+TGG - chr7.3:21624567-21624586 MS.gene41836:intron 50.0%
TTGGTTTCTTCGCTGCAGCT+AGG - chr7.3:21625703-21625722 MS.gene41836:CDS 50.0%
!! CCGCAATTGGTTGGATTGGT+TGG - chr7.3:21627088-21627107 MS.gene41836:intron 50.0%
ACTAGGCAGAGGGAGTTCCA+AGG - chr7.3:21625821-21625840 MS.gene41836:CDS 55.0%
AGGAGAGACCCCAACAAAGG+TGG + chr7.3:21626716-21626735 None:intergenic 55.0%
AGTGTCCAACCTGTGCTCTC+TGG - chr7.3:21626020-21626039 MS.gene41836:intron 55.0%
GCAGCCTCAACATCAATGGG+TGG - chr7.3:21625664-21625683 MS.gene41836:CDS 55.0%
GGCTCTTCTTCCTCCTCTGA+AGG + chr7.3:21624220-21624239 None:intergenic 55.0%
! GTGTTTCTGTTGGAGCTGGC+TGG - chr7.3:21626305-21626324 MS.gene41836:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 21624172 21627521 21624172 ID=MS.gene41836
chr7.3 mRNA 21624172 21627521 21624172 ID=MS.gene41836.t1;Parent=MS.gene41836
chr7.3 exon 21627264 21627521 21627264 ID=MS.gene41836.t1.exon1;Parent=MS.gene41836.t1
chr7.3 CDS 21627264 21627521 21627264 ID=cds.MS.gene41836.t1;Parent=MS.gene41836.t1
chr7.3 exon 21626330 21626868 21626330 ID=MS.gene41836.t1.exon2;Parent=MS.gene41836.t1
chr7.3 CDS 21626330 21626868 21626330 ID=cds.MS.gene41836.t1;Parent=MS.gene41836.t1
chr7.3 exon 21626131 21626217 21626131 ID=MS.gene41836.t1.exon3;Parent=MS.gene41836.t1
chr7.3 CDS 21626131 21626217 21626131 ID=cds.MS.gene41836.t1;Parent=MS.gene41836.t1
chr7.3 exon 21625969 21626025 21625969 ID=MS.gene41836.t1.exon4;Parent=MS.gene41836.t1
chr7.3 CDS 21625969 21626025 21625969 ID=cds.MS.gene41836.t1;Parent=MS.gene41836.t1
chr7.3 exon 21625652 21625890 21625652 ID=MS.gene41836.t1.exon5;Parent=MS.gene41836.t1
chr7.3 CDS 21625652 21625890 21625652 ID=cds.MS.gene41836.t1;Parent=MS.gene41836.t1
chr7.3 exon 21625270 21625388 21625270 ID=MS.gene41836.t1.exon6;Parent=MS.gene41836.t1
chr7.3 CDS 21625270 21625388 21625270 ID=cds.MS.gene41836.t1;Parent=MS.gene41836.t1
chr7.3 exon 21624354 21624440 21624354 ID=MS.gene41836.t1.exon7;Parent=MS.gene41836.t1
chr7.3 CDS 21624354 21624440 21624354 ID=cds.MS.gene41836.t1;Parent=MS.gene41836.t1
chr7.3 exon 21624172 21624255 21624172 ID=MS.gene41836.t1.exon8;Parent=MS.gene41836.t1
chr7.3 CDS 21624172 21624255 21624172 ID=cds.MS.gene41836.t1;Parent=MS.gene41836.t1
Gene Sequence

>MS.gene41836

ATGGGATCAGAAGAGATAAACAAGAACCTTTTGCAGCATCAAAACCCTTCAGAGGAGGAAGAAGAGCCACTAAGGAAAAGGGTATGGGAAGAAAGCAAGAAATTGTGGATAGTAGCAGGCCCTGCCATATTCAATAGGTTTTCAACATTTGGTATCATGGTAGTTGCTCAATCCTTCATTGGTCATATTGGTTCAACCGAATTAGCTGCTTATGCCCTTGTTATGACTGTCCTAGTCAGGTTTGCAAATGGTATTCTGGTAAGTCAATTGTTCCTCAATCTCTTAAATCACAATCGTAATTCTGATATTGCAAAGAATCGTGATCAAATATCATCGATGTTACCTCAATCACAATTGTATTATAGACATCAAAAACCTTGATGTCACAAATACAATTGCGATCGAGTGCAGTGTATGGAAATTTTGCTTTAATTAATAATCATTATGTATTCATATCTTATCACCGATGCTACCTCAATTGCAATAGTATTATAGATATCAAAAACCATATGTCTGTCACAAATACAATTGCGGTCGATGGCAATTTATGAGAATTTTGCTTTAATGAATAATCTTCATGTATTCATATCTTTCTTGTGAAAAATATGCTAAAATTATTTACAATGTTTTTTTGTGCAAATTGAAAATTGTAGTTGGGTATGGCAAGTGCATTAGAAACACTATGTGGACAAGCATATGGAGCAAAACAATATGATATGCTTGGAGTGTATCTTCAAAGATCATGGATAGTTATATTCTTGACCTCAATTCTTCTTCTTCCAATTTACATTTTTACCAAACCAATTTTAGTGGCACTTGGCCAAGATGAAAATATTGCACAAGTTGCTGGAAGCATTTCAATTTGGTCAATAGGTATAGTATTTGCTTTCTCTGCATCATTCACTTGTCAAATGTTCCTACAAGCACAGAGCAAGAACAAGATTATTGCTTACCTTGCAGCAGTTTCAATTTCAATTCATGTTTTTATGTCATGGCTTTTGACTGTGAGGTTCAAGTTTGGCCTTAATGGTGCAATGACATCAATCCTTTTGGCTTATTGGATGCCAAATTTGGGGCAGCTTGTTTTTATCATGACAAAATGTCCTGATACATGGAAGGGTTTCTCATTTTTGGCCTTTAAAGATCTTTGGCCTGTTATCAAGCTTTCTTTATCTTCTGGAGCTATGTTATGGTAAGAATTTGAGCAATTTTCATAATCAATTTTTAAGATTATGTATGGTTTGTAATCAAAGTTTGTTTGGATGAACCATAAGACTAACATGAAGCTATGGTTACTTTTACAGTCTTGAAATATGGTACAACACAGTTTTGATTCTTCTAACAGGGAACATGGAAAATGCTGAGATTTCCATTGATGCTCTTGCTATATGGTACTATATCTCTCATTATCATTCTTACTTTTACTTCAAAATTTAGCATTAAGAGTCATATTGACACTAATCTATTGATTTAATAAAATTATATCATTTTTGCAGCCTCAACATCAATGGGTGGGAAATGATGATAGCCCTTGGTTTCTTCGCTGCAGCTAGGTACATCATTGTGATCACAATCTTATTGAGAAATTTCTTGTCAGTACTAAATGTTAGGCTAAATTACATTTTTTGCAGTGTTAGGGTGTCAAATGAACTAGGCAGAGGGAGTTCCAAGGCAGCAAAATTTTCCATTGTCATAACAGTGCTCACATCATTTTCCATTGGATTTGTGCTATTCTTGATCTTTCTGTTCCTAAGAGGAAGACTTGCTTACATTTTCACCCCAAATCCAGATGTGGCTAATGCAGTTGGAGATCTATCACCTTTGTTATCATTCTCCATATTGATGAACAGTGTCCAACCTGTGCTCTCTGGTAAATATTTACATCATAACTATTATTTACTATTGTTTATTGTTTCAATTTATTTTGTTACATTTCTTAAACTTTAATTTTAGTCCTTAAGATTATAGGTGGCAAGTGAACCTTATCTAATATTCTCCTTCAGATTACACTAACAACAAATTAATTAATTATAAACAATCACAACCATTGATTTGAGATCCGACGGTCCAAATATTCCGTCTCGCTGTTACGGTAGAGAATCCAAATTCATCTAAAAATGTTGTTGTGAATAGGTGTTTCTGTTGGAGCTGGCTGGCAAAGTGTTGTAGCATATGTCAACATAGGCTGCTATTACCTAATTGGTATTCCTATCGGAGTTGTGCTTGGTAATCTTCTTCATTTGCAAGTTAAGGTAATTCATTTATCATTTACATGGAAAAAGTTACTTTGCACAAATGTGTAGAGTGAAATATCAGTAATACTAGTATACTCTTTACTTCGCTACATTATTTATAATTTTTTTTTGTAACCATCGTATTAGTGCGAAACATCCACCAATGACTAATCTCTTACAGGGGATCTCACCGACTATATTTAGTGGGATCTCCCCTTTCAACTACACTTTTTGGTAATTATGTCATTGGTGCGAAGTATTTATCGTCTTTCACAGACAACTAATATGTGTTGGGGAATCTAACTTACCACCTTTGTTGGGGTCTCTCCTATCAACCATATTTTTTCATCGACGAGTCTCGAACGTGAGACCTTGCTTATCCAAATCCAATTTACCCTAACCAATGTAATGTTGATATGTTATTTATAATTTACTAAATTACATAGGTTCCATTACTTTGTTTATATATAAAAAATAAGATCAAATGAGATAATAATTATATGATTACTTTCAATTACTTTATGTTAACATGCATTCAGTGTCAATGTGTGTAAGCACTTCACACGATATGTTCCGTCCTTAGAATAGAATTTAACGTGAAACCTATCATTTATGAAATCATGGACTAAAACTCATGTCAGTACCATGGATGAAATGTCTAACCATTTACCATTTGTATCAACCGCAATTGGTTGGATTGGTTGGATTCCATTAATTTTTTGACAAATATATATACCAAATAGAAAATGGGATCCACGTATATAATTTAAAGAGAGATTAGTGCTTCCTATATCGCATAATGATTAAAGAGATATTGTTGGTGCTGAAATTTGGTCACTTTTTGCAGGGTGTTTGGATTGGAATGTTGTTTGGAACTTTTGTTCAAACCATAATGCTTATGATAATCACATTTAAGACTGACTGGGACAAGCAGGTATTAGTCAATTTACTATATTCTCTATAATTGTGAAATTGATTGATATCCGTTTCTTATAATTTTAAGCATCTAATAATAACATATGTATTTTACAGGTTGAGATTGCTAGAAATCGTGTTAACAAATGGGCTGTAGTGGAGAATGATGAATCAAACAACACATCAAGGATATCCAACTAA
Protein sequence

>MS.gene41836.t1

MGSEEINKNLLQHQNPSEEEEEPLRKRVWEESKKLWIVAGPAIFNRFSTFGIMVVAQSFIGHIGSTELAAYALVMTVLVRFANGILLGMASALETLCGQAYGAKQYDMLGVYLQRSWIVIFLTSILLLPIYIFTKPILVALGQDENIAQVAGSISIWSIGIVFAFSASFTCQMFLQAQSKNKIIAYLAAVSISIHVFMSWLLTVRFKFGLNGAMTSILLAYWMPNLGQLVFIMTKCPDTWKGFSFLAFKDLWPVIKLSLSSGAMLCLEIWYNTVLILLTGNMENAEISIDALAICLNINGWEMMIALGFFAAASVRVSNELGRGSSKAAKFSIVITVLTSFSIGFVLFLIFLFLRGRLAYIFTPNPDVANAVGDLSPLLSFSILMNSVQPVLSGVSVGAGWQSVVAYVNIGCYYLIGIPIGVVLGNLLHLQVKGVWIGMLFGTFVQTIMLMIITFKTDWDKQVEIARNRVNKWAVVENDESNNTSRISN