Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55576.t1 | XP_013451493.1 | 95.7 | 488 | 21 | 0 | 1 | 488 | 1 | 488 | 4.20E-258 | 900.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55576.t1 | Q8W488 | 62.5 | 461 | 171 | 2 | 18 | 477 | 29 | 488 | 2.5e-158 | 560.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55576.t1 | A0A072U818 | 95.7 | 488 | 21 | 0 | 1 | 488 | 1 | 488 | 3.0e-258 | 900.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55576 | MS.gene41836 | PPI |
| MS.gene83904 | MS.gene55576 | PPI |
| MS.gene55576 | MS.gene029498 | PPI |
| MS.gene55576 | MS.gene058644 | PPI |
| MS.gene55576 | MS.gene029501 | PPI |
| MS.gene55576 | MS.gene054821 | PPI |
| MS.gene55576 | MS.gene47232 | PPI |
| MS.gene55576 | MS.gene55577 | PPI |
| MS.gene55576 | MS.gene83905 | PPI |
| MS.gene042538 | MS.gene55576 | PPI |
| MS.gene55576 | MS.gene023921 | PPI |
| MS.gene55576 | MS.gene013876 | PPI |
| MS.gene55576 | MS.gene042535 | PPI |
| MS.gene62346 | MS.gene55576 | PPI |
| MS.gene55576 | MS.gene62347 | PPI |
| MS.gene55576 | MS.gene41839 | PPI |
| MS.gene55576 | MS.gene73451 | PPI |
| MS.gene55576 | MS.gene71750 | PPI |
| MS.gene042539 | MS.gene55576 | PPI |
| MS.gene55576 | MS.gene013874 | PPI |
| MS.gene55576 | MS.gene47231 | PPI |
| MS.gene55578 | MS.gene55576 | PPI |
| MS.gene73453 | MS.gene55576 | PPI |
| MS.gene71749 | MS.gene55576 | PPI |
| MS.gene55576 | MS.gene41838 | PPI |
| MS.gene013873 | MS.gene55576 | PPI |
| MS.gene013875 | MS.gene55576 | PPI |
| MS.gene55576 | MS.gene042536 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55576.t1 | MTR_6g027190 | 95.697 | 488 | 21 | 0 | 1 | 488 | 1 | 488 | 0.0 | 887 |
| MS.gene55576.t1 | MTR_6g027200 | 79.400 | 500 | 91 | 1 | 1 | 488 | 1 | 500 | 0.0 | 782 |
| MS.gene55576.t1 | MTR_7g087400 | 71.843 | 483 | 128 | 2 | 4 | 479 | 3 | 484 | 0.0 | 709 |
| MS.gene55576.t1 | MTR_7g087410 | 66.038 | 477 | 151 | 3 | 3 | 469 | 1 | 476 | 0.0 | 634 |
| MS.gene55576.t1 | MTR_7g087370 | 65.010 | 483 | 132 | 3 | 4 | 479 | 3 | 455 | 0.0 | 622 |
| MS.gene55576.t1 | MTR_7g087410 | 67.959 | 387 | 123 | 1 | 84 | 469 | 1 | 387 | 0.0 | 543 |
| MS.gene55576.t1 | MTR_7g087430 | 68.475 | 387 | 121 | 1 | 84 | 469 | 1 | 387 | 0.0 | 535 |
| MS.gene55576.t1 | MTR_5g032720 | 49.567 | 462 | 230 | 3 | 16 | 475 | 28 | 488 | 1.95e-162 | 469 |
| MS.gene55576.t1 | MTR_5g032750 | 47.510 | 482 | 234 | 7 | 3 | 475 | 18 | 489 | 4.38e-154 | 447 |
| MS.gene55576.t1 | MTR_3g099700 | 48.927 | 466 | 235 | 3 | 13 | 476 | 35 | 499 | 4.88e-153 | 446 |
| MS.gene55576.t1 | MTR_1g021740 | 48.140 | 457 | 235 | 2 | 13 | 468 | 24 | 479 | 1.51e-145 | 426 |
| MS.gene55576.t1 | MTR_3g099720 | 45.770 | 461 | 247 | 3 | 8 | 466 | 24 | 483 | 2.54e-141 | 415 |
| MS.gene55576.t1 | MTR_8g069470 | 43.064 | 483 | 271 | 3 | 2 | 483 | 30 | 509 | 6.84e-140 | 412 |
| MS.gene55576.t1 | MTR_2g022980 | 46.610 | 472 | 245 | 3 | 3 | 468 | 23 | 493 | 4.34e-138 | 407 |
| MS.gene55576.t1 | MTR_1g100180 | 44.211 | 475 | 260 | 3 | 5 | 478 | 27 | 497 | 6.34e-138 | 407 |
| MS.gene55576.t1 | MTR_5g033100 | 45.053 | 475 | 255 | 3 | 8 | 477 | 40 | 513 | 8.31e-135 | 399 |
| MS.gene55576.t1 | MTR_4g048000 | 45.399 | 489 | 252 | 4 | 4 | 486 | 40 | 519 | 8.61e-134 | 397 |
| MS.gene55576.t1 | MTR_2g088400 | 46.072 | 471 | 247 | 3 | 4 | 468 | 28 | 497 | 1.88e-131 | 390 |
| MS.gene55576.t1 | MTR_6g047610 | 40.295 | 474 | 276 | 5 | 4 | 476 | 14 | 481 | 1.52e-118 | 357 |
| MS.gene55576.t1 | MTR_6g047640 | 40.000 | 475 | 277 | 4 | 4 | 476 | 14 | 482 | 2.63e-117 | 353 |
| MS.gene55576.t1 | MTR_2g088400 | 45.057 | 435 | 232 | 3 | 4 | 432 | 28 | 461 | 2.69e-113 | 342 |
| MS.gene55576.t1 | MTR_5g090290 | 42.827 | 474 | 265 | 3 | 4 | 472 | 23 | 495 | 5.80e-112 | 343 |
| MS.gene55576.t1 | MTR_6g047640 | 37.684 | 475 | 269 | 5 | 4 | 476 | 14 | 463 | 3.32e-109 | 332 |
| MS.gene55576.t1 | MTR_6g047590 | 39.574 | 470 | 277 | 5 | 4 | 472 | 14 | 477 | 9.49e-108 | 328 |
| MS.gene55576.t1 | MTR_8g063590 | 39.703 | 471 | 275 | 5 | 3 | 466 | 29 | 497 | 5.58e-105 | 323 |
| MS.gene55576.t1 | MTR_6g081410 | 34.947 | 475 | 297 | 6 | 1 | 467 | 1 | 471 | 5.57e-87 | 275 |
| MS.gene55576.t1 | MTR_5g087930 | 38.976 | 449 | 233 | 9 | 4 | 450 | 23 | 432 | 3.35e-85 | 270 |
| MS.gene55576.t1 | MTR_6g081780 | 34.461 | 473 | 298 | 6 | 1 | 465 | 1 | 469 | 1.62e-84 | 269 |
| MS.gene55576.t1 | MTR_6g081300 | 35.230 | 457 | 279 | 7 | 19 | 466 | 5 | 453 | 8.48e-84 | 266 |
| MS.gene55576.t1 | MTR_1g108810 | 33.987 | 459 | 300 | 2 | 4 | 460 | 14 | 471 | 3.26e-82 | 263 |
| MS.gene55576.t1 | MTR_6g081390 | 34.802 | 454 | 288 | 5 | 19 | 467 | 7 | 457 | 3.24e-80 | 257 |
| MS.gene55576.t1 | MTR_6g081400 | 33.554 | 453 | 295 | 3 | 19 | 467 | 10 | 460 | 1.93e-79 | 255 |
| MS.gene55576.t1 | MTR_7g082810 | 36.129 | 465 | 288 | 4 | 7 | 465 | 1 | 462 | 3.88e-78 | 252 |
| MS.gene55576.t1 | MTR_6g066380 | 35.650 | 446 | 275 | 6 | 27 | 465 | 31 | 471 | 1.15e-77 | 251 |
| MS.gene55576.t1 | MTR_6g081810 | 34.043 | 470 | 278 | 6 | 1 | 465 | 1 | 443 | 1.49e-76 | 247 |
| MS.gene55576.t1 | MTR_6g081240 | 33.632 | 446 | 285 | 6 | 19 | 458 | 5 | 445 | 1.64e-76 | 247 |
| MS.gene55576.t1 | MTR_2g079020 | 34.444 | 450 | 286 | 3 | 15 | 456 | 22 | 470 | 3.57e-74 | 243 |
| MS.gene55576.t1 | MTR_8g106670 | 32.543 | 464 | 297 | 10 | 12 | 467 | 1 | 456 | 1.54e-71 | 235 |
| MS.gene55576.t1 | MTR_2g078930 | 34.253 | 435 | 283 | 2 | 24 | 456 | 43 | 476 | 9.89e-71 | 233 |
| MS.gene55576.t1 | MTR_1g108840 | 33.053 | 475 | 295 | 10 | 2 | 465 | 21 | 483 | 8.19e-70 | 231 |
| MS.gene55576.t1 | MTR_2g078960 | 33.333 | 462 | 299 | 3 | 3 | 456 | 6 | 466 | 2.25e-69 | 229 |
| MS.gene55576.t1 | MTR_6g004220 | 31.601 | 481 | 312 | 8 | 3 | 472 | 1 | 475 | 5.91e-69 | 228 |
| MS.gene55576.t1 | MTR_2g078970 | 33.333 | 453 | 292 | 3 | 13 | 456 | 13 | 464 | 1.63e-68 | 227 |
| MS.gene55576.t1 | MTR_6g081310 | 32.829 | 463 | 278 | 5 | 19 | 465 | 5 | 450 | 3.08e-68 | 226 |
| MS.gene55576.t1 | MTR_6g004220 | 31.828 | 465 | 302 | 7 | 3 | 458 | 8 | 466 | 9.93e-68 | 226 |
| MS.gene55576.t1 | MTR_5g090280 | 35.252 | 417 | 230 | 5 | 84 | 469 | 1 | 408 | 9.79e-66 | 218 |
| MS.gene55576.t1 | MTR_1g108990 | 32.766 | 470 | 302 | 7 | 7 | 465 | 1 | 467 | 8.55e-65 | 217 |
| MS.gene55576.t1 | MTR_7g082800 | 32.576 | 396 | 263 | 2 | 84 | 476 | 1 | 395 | 1.45e-62 | 209 |
| MS.gene55576.t1 | MTR_3g111020 | 29.724 | 471 | 314 | 7 | 3 | 462 | 26 | 490 | 1.25e-61 | 211 |
| MS.gene55576.t1 | MTR_1g109060 | 32.409 | 469 | 304 | 6 | 7 | 465 | 1 | 466 | 2.60e-61 | 208 |
| MS.gene55576.t1 | MTR_1g109060 | 32.684 | 462 | 298 | 6 | 7 | 458 | 1 | 459 | 9.72e-61 | 207 |
| MS.gene55576.t1 | MTR_5g067460 | 27.215 | 474 | 319 | 7 | 2 | 462 | 34 | 494 | 1.84e-53 | 189 |
| MS.gene55576.t1 | MTR_2g078990 | 36.207 | 290 | 183 | 1 | 169 | 456 | 4 | 293 | 6.52e-50 | 173 |
| MS.gene55576.t1 | MTR_5g010830 | 27.312 | 465 | 309 | 6 | 13 | 462 | 54 | 504 | 3.60e-49 | 177 |
| MS.gene55576.t1 | MTR_1g101500 | 27.489 | 462 | 316 | 8 | 6 | 457 | 46 | 498 | 1.70e-47 | 172 |
| MS.gene55576.t1 | MTR_0039s0080 | 26.050 | 476 | 337 | 5 | 21 | 488 | 35 | 503 | 6.82e-47 | 170 |
| MS.gene55576.t1 | MTR_6g043810 | 25.646 | 503 | 349 | 8 | 4 | 488 | 3 | 498 | 3.08e-46 | 168 |
| MS.gene55576.t1 | MTR_6g043810 | 25.646 | 503 | 349 | 8 | 4 | 488 | 13 | 508 | 4.33e-46 | 168 |
| MS.gene55576.t1 | MTR_4g027920 | 26.846 | 447 | 318 | 5 | 21 | 461 | 153 | 596 | 2.27e-44 | 165 |
| MS.gene55576.t1 | MTR_6g004220 | 28.928 | 401 | 260 | 7 | 3 | 389 | 8 | 397 | 8.21e-43 | 157 |
| MS.gene55576.t1 | MTR_6g088805 | 26.078 | 487 | 327 | 7 | 5 | 475 | 7 | 476 | 9.43e-40 | 150 |
| MS.gene55576.t1 | MTR_2g079030 | 40.513 | 195 | 116 | 0 | 262 | 456 | 319 | 513 | 1.05e-36 | 142 |
| MS.gene55576.t1 | MTR_5g011540 | 28.791 | 455 | 294 | 10 | 24 | 462 | 43 | 483 | 4.53e-34 | 134 |
| MS.gene55576.t1 | MTR_8g102430 | 25.217 | 460 | 287 | 11 | 22 | 462 | 21 | 442 | 5.01e-33 | 130 |
| MS.gene55576.t1 | MTR_6g004220 | 28.750 | 320 | 203 | 7 | 3 | 308 | 8 | 316 | 1.62e-29 | 118 |
| MS.gene55576.t1 | MTR_2g435930 | 22.894 | 463 | 338 | 5 | 13 | 457 | 8 | 469 | 1.96e-28 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55576.t1 | AT1G33110 | 61.783 | 471 | 175 | 3 | 8 | 477 | 22 | 488 | 0.0 | 593 |
| MS.gene55576.t1 | AT1G33100 | 58.455 | 479 | 194 | 3 | 3 | 477 | 8 | 485 | 0.0 | 579 |
| MS.gene55576.t1 | AT1G33080 | 59.100 | 489 | 187 | 4 | 1 | 477 | 1 | 488 | 0.0 | 562 |
| MS.gene55576.t1 | AT1G33090 | 57.895 | 475 | 189 | 3 | 4 | 477 | 24 | 488 | 0.0 | 557 |
| MS.gene55576.t1 | AT1G33080 | 60.776 | 464 | 170 | 3 | 6 | 458 | 7 | 469 | 0.0 | 552 |
| MS.gene55576.t1 | AT1G33110 | 62.435 | 386 | 140 | 3 | 8 | 392 | 22 | 403 | 1.74e-167 | 478 |
| MS.gene55576.t1 | AT5G44050 | 47.485 | 497 | 233 | 5 | 1 | 475 | 1 | 491 | 1.35e-156 | 454 |
| MS.gene55576.t1 | AT5G65380 | 50.109 | 459 | 226 | 3 | 13 | 469 | 25 | 482 | 2.85e-156 | 453 |
| MS.gene55576.t1 | AT4G00350 | 45.946 | 444 | 239 | 1 | 25 | 468 | 88 | 530 | 1.32e-144 | 425 |
| MS.gene55576.t1 | AT1G47530 | 45.679 | 486 | 249 | 5 | 3 | 475 | 1 | 484 | 1.38e-144 | 423 |
| MS.gene55576.t1 | AT5G10420 | 50.000 | 468 | 221 | 4 | 13 | 473 | 26 | 487 | 1.65e-144 | 423 |
| MS.gene55576.t1 | AT3G03620 | 46.596 | 470 | 243 | 4 | 13 | 477 | 23 | 489 | 1.14e-141 | 416 |
| MS.gene55576.t1 | AT3G03620 | 46.596 | 470 | 243 | 4 | 13 | 477 | 23 | 489 | 1.14e-141 | 416 |
| MS.gene55576.t1 | AT5G17700 | 45.263 | 475 | 250 | 4 | 6 | 471 | 7 | 480 | 1.07e-140 | 414 |
| MS.gene55576.t1 | AT5G17700 | 45.263 | 475 | 250 | 4 | 6 | 471 | 7 | 480 | 1.07e-140 | 414 |
| MS.gene55576.t1 | AT1G61890 | 46.368 | 468 | 244 | 3 | 7 | 468 | 25 | 491 | 4.74e-138 | 407 |
| MS.gene55576.t1 | AT1G11670 | 46.368 | 468 | 244 | 3 | 7 | 468 | 28 | 494 | 2.77e-136 | 403 |
| MS.gene55576.t1 | AT3G26590 | 43.354 | 489 | 255 | 3 | 1 | 468 | 1 | 488 | 2.98e-135 | 400 |
| MS.gene55576.t1 | AT1G61890 | 46.004 | 463 | 243 | 3 | 3 | 459 | 21 | 482 | 2.64e-134 | 397 |
| MS.gene55576.t1 | AT4G25640 | 43.871 | 465 | 258 | 2 | 6 | 468 | 13 | 476 | 5.54e-131 | 389 |
| MS.gene55576.t1 | AT3G21690 | 45.877 | 473 | 249 | 4 | 5 | 475 | 35 | 502 | 7.48e-131 | 389 |
| MS.gene55576.t1 | AT4G25640 | 43.312 | 471 | 264 | 2 | 1 | 469 | 8 | 477 | 1.82e-130 | 388 |
| MS.gene55576.t1 | AT5G38030 | 44.719 | 445 | 244 | 2 | 25 | 468 | 45 | 488 | 5.07e-130 | 387 |
| MS.gene55576.t1 | AT1G23300 | 46.517 | 445 | 236 | 2 | 25 | 468 | 44 | 487 | 7.04e-130 | 387 |
| MS.gene55576.t1 | AT1G12950 | 43.612 | 454 | 254 | 2 | 25 | 477 | 67 | 519 | 8.12e-130 | 387 |
| MS.gene55576.t1 | AT1G47530 | 48.346 | 393 | 201 | 2 | 84 | 475 | 1 | 392 | 3.43e-128 | 378 |
| MS.gene55576.t1 | AT4G25640 | 43.868 | 424 | 235 | 2 | 6 | 427 | 13 | 435 | 4.24e-120 | 360 |
| MS.gene55576.t1 | AT3G26590 | 46.373 | 386 | 206 | 1 | 84 | 468 | 1 | 386 | 8.43e-120 | 357 |
| MS.gene55576.t1 | AT4G21910 | 43.376 | 468 | 257 | 4 | 7 | 468 | 33 | 498 | 9.71e-120 | 360 |
| MS.gene55576.t1 | AT4G21910 | 43.376 | 468 | 257 | 4 | 7 | 468 | 33 | 498 | 9.71e-120 | 360 |
| MS.gene55576.t1 | AT4G21910 | 42.735 | 468 | 260 | 4 | 7 | 468 | 35 | 500 | 9.66e-119 | 358 |
| MS.gene55576.t1 | AT4G21910 | 42.735 | 468 | 260 | 4 | 7 | 468 | 35 | 500 | 9.66e-119 | 358 |
| MS.gene55576.t1 | AT3G59030 | 40.825 | 485 | 273 | 5 | 4 | 478 | 25 | 505 | 1.13e-117 | 355 |
| MS.gene55576.t1 | AT4G21903 | 44.836 | 426 | 231 | 3 | 45 | 468 | 73 | 496 | 1.05e-116 | 353 |
| MS.gene55576.t1 | AT1G61890 | 44.622 | 437 | 235 | 3 | 7 | 437 | 25 | 460 | 1.09e-116 | 352 |
| MS.gene55576.t1 | AT4G21903 | 44.000 | 425 | 234 | 3 | 45 | 467 | 73 | 495 | 1.69e-113 | 345 |
| MS.gene55576.t1 | AT4G21903 | 45.736 | 387 | 208 | 1 | 84 | 468 | 1 | 387 | 9.54e-113 | 338 |
| MS.gene55576.t1 | AT5G17700 | 44.697 | 396 | 209 | 4 | 6 | 392 | 7 | 401 | 2.06e-110 | 333 |
| MS.gene55576.t1 | AT3G59030 | 39.141 | 396 | 227 | 5 | 4 | 389 | 25 | 416 | 2.58e-83 | 264 |
| MS.gene55576.t1 | AT5G52450 | 34.526 | 475 | 293 | 7 | 3 | 466 | 1 | 468 | 1.12e-80 | 259 |
| MS.gene55576.t1 | AT2G34360 | 35.052 | 485 | 288 | 10 | 4 | 474 | 6 | 477 | 1.58e-80 | 258 |
| MS.gene55576.t1 | AT1G73700 | 35.532 | 470 | 291 | 7 | 3 | 465 | 1 | 465 | 3.86e-77 | 249 |
| MS.gene55576.t1 | AT1G71140 | 34.591 | 477 | 285 | 9 | 5 | 465 | 2 | 467 | 4.44e-76 | 247 |
| MS.gene55576.t1 | AT2G34360 | 33.884 | 484 | 253 | 12 | 4 | 474 | 6 | 435 | 1.20e-67 | 224 |
| MS.gene55576.t1 | AT1G66780 | 35.129 | 427 | 260 | 8 | 48 | 465 | 58 | 476 | 2.39e-67 | 224 |
| MS.gene55576.t1 | AT2G04080 | 32.563 | 476 | 296 | 11 | 7 | 465 | 1 | 468 | 2.67e-67 | 224 |
| MS.gene55576.t1 | AT2G04040 | 33.058 | 484 | 295 | 11 | 7 | 469 | 1 | 476 | 6.33e-67 | 223 |
| MS.gene55576.t1 | AT1G66760 | 32.211 | 475 | 304 | 8 | 3 | 465 | 1 | 469 | 1.08e-66 | 222 |
| MS.gene55576.t1 | AT1G66760 | 32.479 | 468 | 298 | 8 | 3 | 458 | 1 | 462 | 1.60e-66 | 221 |
| MS.gene55576.t1 | AT2G04080 | 32.415 | 472 | 294 | 11 | 7 | 461 | 1 | 464 | 3.30e-66 | 221 |
| MS.gene55576.t1 | AT1G15160 | 32.587 | 491 | 298 | 13 | 5 | 475 | 2 | 479 | 9.35e-65 | 217 |
| MS.gene55576.t1 | AT2G04070 | 32.773 | 476 | 295 | 9 | 7 | 465 | 1 | 468 | 8.52e-64 | 214 |
| MS.gene55576.t1 | AT1G15150 | 31.493 | 489 | 306 | 11 | 5 | 475 | 2 | 479 | 9.52e-64 | 215 |
| MS.gene55576.t1 | AT2G04050 | 32.851 | 484 | 296 | 10 | 7 | 469 | 1 | 476 | 1.74e-63 | 214 |
| MS.gene55576.t1 | AT1G64820 | 31.626 | 449 | 294 | 6 | 24 | 465 | 28 | 470 | 6.12e-63 | 213 |
| MS.gene55576.t1 | AT1G15170 | 31.134 | 485 | 304 | 11 | 1 | 465 | 1 | 475 | 1.55e-61 | 209 |
| MS.gene55576.t1 | AT3G23560 | 32.096 | 458 | 296 | 7 | 8 | 456 | 20 | 471 | 1.93e-61 | 208 |
| MS.gene55576.t1 | AT3G23550 | 32.579 | 442 | 281 | 8 | 24 | 456 | 30 | 463 | 4.93e-61 | 207 |
| MS.gene55576.t1 | AT2G04090 | 30.342 | 468 | 315 | 5 | 4 | 465 | 9 | 471 | 7.33e-57 | 196 |
| MS.gene55576.t1 | AT2G04100 | 30.303 | 462 | 307 | 6 | 12 | 465 | 17 | 471 | 2.46e-56 | 195 |
| MS.gene55576.t1 | AT2G04100 | 30.635 | 457 | 302 | 6 | 12 | 460 | 17 | 466 | 3.93e-56 | 194 |
| MS.gene55576.t1 | AT1G15180 | 32.000 | 450 | 289 | 9 | 25 | 465 | 35 | 476 | 9.35e-54 | 188 |
| MS.gene55576.t1 | AT1G15150 | 32.065 | 368 | 238 | 5 | 115 | 475 | 1 | 363 | 1.55e-50 | 176 |
| MS.gene55576.t1 | AT1G58340 | 26.695 | 472 | 328 | 5 | 4 | 462 | 30 | 496 | 4.68e-50 | 179 |
| MS.gene55576.t1 | AT1G15170 | 32.500 | 360 | 230 | 6 | 115 | 465 | 1 | 356 | 1.86e-49 | 173 |
| MS.gene55576.t1 | AT2G38510 | 25.647 | 464 | 333 | 6 | 21 | 477 | 2 | 460 | 5.03e-48 | 172 |
| MS.gene55576.t1 | AT1G66760 | 32.641 | 337 | 219 | 5 | 127 | 458 | 1 | 334 | 1.82e-45 | 162 |
| MS.gene55576.t1 | AT1G66760 | 30.576 | 399 | 259 | 8 | 3 | 389 | 1 | 393 | 3.36e-44 | 160 |
| MS.gene55576.t1 | AT3G23560 | 31.202 | 391 | 254 | 7 | 8 | 389 | 20 | 404 | 3.18e-42 | 155 |
| MS.gene55576.t1 | AT5G52050 | 25.306 | 490 | 319 | 8 | 3 | 462 | 7 | 479 | 1.05e-37 | 145 |
| MS.gene55576.t1 | AT5G19700 | 25.591 | 465 | 321 | 5 | 6 | 457 | 17 | 469 | 4.16e-37 | 143 |
| MS.gene55576.t1 | AT1G71870 | 23.495 | 515 | 355 | 12 | 3 | 488 | 1 | 505 | 1.32e-35 | 139 |
| MS.gene55576.t1 | AT4G29140 | 25.813 | 461 | 321 | 9 | 13 | 462 | 44 | 494 | 1.95e-33 | 133 |
| MS.gene55576.t1 | AT4G23030 | 25.216 | 464 | 329 | 5 | 24 | 477 | 31 | 486 | 3.68e-32 | 129 |
| MS.gene55576.t1 | AT5G49130 | 24.370 | 476 | 338 | 8 | 1 | 457 | 1 | 473 | 3.74e-29 | 120 |
| MS.gene55576.t1 | AT4G22790 | 24.646 | 495 | 340 | 13 | 2 | 480 | 9 | 486 | 4.38e-27 | 114 |
| MS.gene55576.t1 | AT1G15180 | 31.395 | 258 | 171 | 4 | 136 | 389 | 25 | 280 | 1.80e-25 | 108 |
| MS.gene55576.t1 | AT2G04066 | 38.400 | 125 | 76 | 1 | 342 | 465 | 39 | 163 | 6.63e-23 | 95.9 |
Find 97 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTCTTCTGTAGGGTATT+TGG | 0.178814 | 6.2:-18420724 | MS.gene55576:intron |
| TGTCATTAATATTGGGATTA+TGG | 0.191528 | 6.2:-18432530 | MS.gene55576:CDS |
| ATTGGTGTTGTTTACAATTT+AGG | 0.194685 | 6.2:-18420839 | MS.gene55576:CDS |
| TTGGAAGGGTTTCTCAGTTT+TGG | 0.238309 | 6.2:-18432457 | MS.gene55576:CDS |
| ATAGGTTGTTATTACCTAAT+TGG | 0.249961 | 6.2:-18420881 | MS.gene55576:CDS |
| CTGTTGGAGATTTATCATTT+TGG | 0.260277 | 6.2:-18421595 | MS.gene55576:CDS |
| AAGAGAAAATGCAGCTAAAT+AGG | 0.264252 | 6.2:+18432620 | None:intergenic |
| CAGATTTATAACTGGTATAT+TGG | 0.274489 | 6.2:-18434314 | MS.gene55576:intron |
| ATTTGGATTGGGATGTTGTT+TGG | 0.287275 | 6.2:-18420707 | MS.gene55576:CDS |
| AGTGATGATAATAAGCATTA+TGG | 0.289788 | 6.2:+18420670 | None:intergenic |
| TTCTGTAGGGTATTTGGATT+GGG | 0.295447 | 6.2:-18420718 | MS.gene55576:intron |
| TTTCCCAACCATTGATGTTT+AGG | 0.296003 | 6.2:+18422233 | None:intergenic |
| TTCACAAAAGTTTCAACATT+TGG | 0.302856 | 6.2:-18434424 | MS.gene55576:CDS |
| GGGAAGAAAGCAAGAAGATT+TGG | 0.306018 | 6.2:-18434468 | MS.gene55576:CDS |
| GGTATGGTACAGCTCAATTT+TGG | 0.307428 | 6.2:-18422447 | MS.gene55576:CDS |
| GGATTATGGTTACCTAATAT+TGG | 0.307935 | 6.2:-18432516 | MS.gene55576:CDS |
| TGCAATGATGTCATTAATAT+TGG | 0.308619 | 6.2:-18432538 | MS.gene55576:CDS |
| TGTCCAAATGCCTCTAAAAT+TGG | 0.308982 | 6.2:+18432768 | None:intergenic |
| AATATGACCTGACCAATATT+AGG | 0.323052 | 6.2:+18432504 | None:intergenic |
| ACAATTGCACTTTGGGCAAT+AGG | 0.332654 | 6.2:-18432717 | MS.gene55576:CDS |
| TTGACTGTTAAGTTTGAGTT+TGG | 0.338835 | 6.2:-18432570 | MS.gene55576:CDS |
| CTTCTGTAGGGTATTTGGAT+TGG | 0.342461 | 6.2:-18420719 | MS.gene55576:intron |
| GGGAGGAACAATTGCACTTT+GGG | 0.346887 | 6.2:-18432724 | MS.gene55576:CDS |
| CCCAGTGGAGAGTTAATAGA+TGG | 0.355441 | 6.2:-18420251 | MS.gene55576:CDS |
| ACTCTATGCAGATTTATAAC+TGG | 0.359668 | 6.2:-18434322 | MS.gene55576:CDS |
| CTGTTCATGTTCTGTTGTCT+TGG | 0.360376 | 6.2:-18432596 | MS.gene55576:CDS |
| TCATCACTCTTAAAACTGAT+TGG | 0.362176 | 6.2:-18420655 | MS.gene55576:CDS |
| GTGAAGCTCTCTTTCTCATC+TGG | 0.373034 | 6.2:-18432411 | MS.gene55576:CDS |
| GAGAAACCCTTCCAAGTATC+AGG | 0.383830 | 6.2:+18432465 | None:intergenic |
| CCCTTAGTTCTATGTCCATA+TGG | 0.391501 | 6.2:-18422388 | MS.gene55576:intron |
| GGAAGAAAGCAAGAAGATTT+GGG | 0.402710 | 6.2:-18434467 | MS.gene55576:CDS |
| AGAAAGAATCACTAAGGAAA+AGG | 0.416424 | 6.2:-18434495 | MS.gene55576:CDS |
| TGGGAAATGATGATTGCTCT+TGG | 0.422442 | 6.2:-18422217 | MS.gene55576:CDS |
| TACCTAATTGGTATTCCTGT+TGG | 0.427331 | 6.2:-18420869 | MS.gene55576:CDS |
| TTCCAACAGGAATACCAATT+AGG | 0.430035 | 6.2:+18420867 | None:intergenic |
| TTTGTGCTTGCAAGAATGTT+TGG | 0.431478 | 6.2:+18432661 | None:intergenic |
| ATAACTGCTCTCACATCATT+TGG | 0.433951 | 6.2:-18421704 | MS.gene55576:CDS |
| CATCACTCTTAAAACTGATT+GGG | 0.440673 | 6.2:-18420654 | MS.gene55576:CDS |
| GCAATGATGTCATTAATATT+GGG | 0.444498 | 6.2:-18432537 | MS.gene55576:CDS |
| ACACTTTGTGGACAAGCATA+TGG | 0.446907 | 6.2:-18432891 | MS.gene55576:CDS |
| AATCACTAAGGAAAAGGGTA+TGG | 0.454433 | 6.2:-18434489 | MS.gene55576:CDS |
| GTTCGAGTGGCAAATGAACT+TGG | 0.458869 | 6.2:-18421764 | MS.gene55576:CDS |
| TCTGCAAAAGCTTCTCCTCT+AGG | 0.462344 | 6.2:+18434518 | None:intergenic |
| GAGTGTATCTACAAAGATCT+TGG | 0.465546 | 6.2:-18432845 | MS.gene55576:CDS |
| ATAGGAGTTTCTGTTGGAGC+TGG | 0.466570 | 6.2:-18420932 | MS.gene55576:intron |
| GCTCTCACATCATTTGGCAT+TGG | 0.469504 | 6.2:-18421698 | MS.gene55576:CDS |
| CAGCCTAAACATCAATGGTT+GGG | 0.472441 | 6.2:-18422236 | MS.gene55576:CDS |
| ATGGTTACCTAATATTGGTC+AGG | 0.473718 | 6.2:-18432511 | MS.gene55576:CDS |
| AAGTTTGAGTTTGGACTCAA+TGG | 0.474511 | 6.2:-18432561 | MS.gene55576:CDS |
| CCCATCTATTAACTCTCCAC+TGG | 0.475246 | 6.2:+18420250 | None:intergenic |
| ACACCAATCACTATTCCAAC+AGG | 0.478325 | 6.2:+18420854 | None:intergenic |
| TGTTTACAATTTAGGCATCA+AGG | 0.484105 | 6.2:-18420831 | MS.gene55576:intron |
| GAGAAAGAGAGCTTCACAAC+TGG | 0.484868 | 6.2:+18432417 | None:intergenic |
| ATTCCTGTTGGAATAGTGAT+TGG | 0.489049 | 6.2:-18420857 | MS.gene55576:CDS |
| AAGAAGATTTGGGTAGTGGC+AGG | 0.489654 | 6.2:-18434457 | MS.gene55576:CDS |
| TGGGAGGAACAATTGCACTT+TGG | 0.490737 | 6.2:-18432725 | MS.gene55576:CDS |
| GAAAGAATCACTAAGGAAAA+GGG | 0.493235 | 6.2:-18434494 | MS.gene55576:CDS |
| TGCAGAAGAAAGAATCACTA+AGG | 0.493372 | 6.2:-18434501 | MS.gene55576:CDS |
| TATTGCAGCCTAAACATCAA+TGG | 0.493889 | 6.2:-18422241 | MS.gene55576:intron |
| ACCATATGGACATAGAACTA+AGG | 0.499478 | 6.2:+18422387 | None:intergenic |
| AATAATGCTCAAGAATCAAA+TGG | 0.507126 | 6.2:-18420222 | MS.gene55576:CDS |
| GCAAAACAATACAACATGCT+TGG | 0.511054 | 6.2:-18432867 | MS.gene55576:CDS |
| AAGCAAGAAGATTTGGGTAG+TGG | 0.517470 | 6.2:-18434461 | MS.gene55576:CDS |
| GTGTAGTGAATATGTAAAGA+GGG | 0.523535 | 6.2:+18432790 | None:intergenic |
| TAAAACTGATTGGGACAAGC+AGG | 0.527120 | 6.2:-18420645 | MS.gene55576:intron |
| TTGTAAAATGCAGCTTGGGA+TGG | 0.529831 | 6.2:-18432928 | MS.gene55576:intron |
| TCTGATGTGGCTGATGCTGT+TGG | 0.532718 | 6.2:-18421611 | MS.gene55576:CDS |
| TAGGAGTTTCTGTTGGAGCT+GGG | 0.535671 | 6.2:-18420931 | MS.gene55576:CDS |
| GCAGCCTAAACATCAATGGT+TGG | 0.536922 | 6.2:-18422237 | MS.gene55576:intron |
| AGTGTCCAACCTGTACTCTC+TGG | 0.538070 | 6.2:-18421548 | MS.gene55576:intron |
| GGTGTAGTGAATATGTAAAG+AGG | 0.538389 | 6.2:+18432789 | None:intergenic |
| GCTTGGGATGGCAAGTGCAT+TGG | 0.539687 | 6.2:-18432916 | MS.gene55576:CDS |
| AGGTCATCATTCATTGCCAT+TGG | 0.540296 | 6.2:+18434538 | None:intergenic |
| CCATATGGACATAGAACTAA+GGG | 0.540663 | 6.2:+18422388 | None:intergenic |
| ATTGTAGCATATGTAAACAT+AGG | 0.552348 | 6.2:-18420899 | MS.gene55576:CDS |
| TGGCAACATGAAAGATGCTA+AGG | 0.553196 | 6.2:-18422414 | MS.gene55576:CDS |
| GCTCAAGAATCAAATGGCAG+TGG | 0.556270 | 6.2:-18420216 | MS.gene55576:CDS |
| ATCACTAAGGAAAAGGGTAT+GGG | 0.556437 | 6.2:-18434488 | MS.gene55576:CDS |
| ATTAATTTGCAGTGTTCGAG+TGG | 0.557278 | 6.2:-18421777 | MS.gene55576:intron |
| AAAATGTCCTGATACTTGGA+AGG | 0.557312 | 6.2:-18432472 | MS.gene55576:CDS |
| TCATAAATAGGAGTTTCTGT+TGG | 0.559101 | 6.2:-18420938 | MS.gene55576:intron |
| TCTCATCTGGAATCATGTTG+TGG | 0.563578 | 6.2:-18432398 | MS.gene55576:intron |
| CCATCTATTAACTCTCCACT+GGG | 0.565037 | 6.2:+18420251 | None:intergenic |
| AGTGCATTGGAAACACTTTG+TGG | 0.570276 | 6.2:-18432903 | MS.gene55576:CDS |
| TAGTGAATATGTAAAGAGGG+AGG | 0.579134 | 6.2:+18432793 | None:intergenic |
| TAGAGGTTACCAGAGAGTAC+AGG | 0.584592 | 6.2:+18421539 | None:intergenic |
| GTGGCAAATGAACTTGGAAG+AGG | 0.587916 | 6.2:-18421758 | MS.gene55576:CDS |
| TTTCACTTCAGATTCTGATG+TGG | 0.590850 | 6.2:-18421624 | MS.gene55576:CDS |
| AAATGTCCTGATACTTGGAA+GGG | 0.600883 | 6.2:-18432471 | MS.gene55576:CDS |
| TTGAGCTGTACCATACCTCA+AGG | 0.615430 | 6.2:+18422453 | None:intergenic |
| AGAAGATTTGGGTAGTGGCA+GGG | 0.619460 | 6.2:-18434456 | MS.gene55576:CDS |
| GACACAGCCATTGCAAAAGT+AGG | 0.641025 | 6.2:+18432693 | None:intergenic |
| CCAGTGGAGAGTTAATAGAT+GGG | 0.643174 | 6.2:-18420250 | MS.gene55576:CDS |
| GGCAATGAATGATGACCTAG+AGG | 0.643193 | 6.2:-18434533 | MS.gene55576:CDS |
| GAGTTTCTGTTGGAGCTGGG+TGG | 0.659899 | 6.2:-18420928 | MS.gene55576:CDS |
| GGTTACCAGAGAGTACAGGT+TGG | 0.690160 | 6.2:+18421543 | None:intergenic |
| TTCAGGTAGAGATAGCCCAG+TGG | 0.730416 | 6.2:-18420266 | MS.gene55576:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 18420188 | 18434557 | 18420188 | ID=MS.gene55576 |
| chr6.2 | mRNA | 18420188 | 18434557 | 18420188 | ID=MS.gene55576.t1;Parent=MS.gene55576 |
| chr6.2 | exon | 18434315 | 18434557 | 18434315 | ID=MS.gene55576.t1.exon1;Parent=MS.gene55576.t1 |
| chr6.2 | CDS | 18434315 | 18434557 | 18434315 | ID=cds.MS.gene55576.t1;Parent=MS.gene55576.t1 |
| chr6.2 | exon | 18432399 | 18432937 | 18432399 | ID=MS.gene55576.t1.exon2;Parent=MS.gene55576.t1 |
| chr6.2 | CDS | 18432399 | 18432937 | 18432399 | ID=cds.MS.gene55576.t1;Parent=MS.gene55576.t1 |
| chr6.2 | exon | 18422389 | 18422475 | 18422389 | ID=MS.gene55576.t1.exon3;Parent=MS.gene55576.t1 |
| chr6.2 | CDS | 18422389 | 18422475 | 18422389 | ID=cds.MS.gene55576.t1;Parent=MS.gene55576.t1 |
| chr6.2 | exon | 18422199 | 18422255 | 18422199 | ID=MS.gene55576.t1.exon4;Parent=MS.gene55576.t1 |
| chr6.2 | CDS | 18422199 | 18422255 | 18422199 | ID=cds.MS.gene55576.t1;Parent=MS.gene55576.t1 |
| chr6.2 | exon | 18421549 | 18421787 | 18421549 | ID=MS.gene55576.t1.exon5;Parent=MS.gene55576.t1 |
| chr6.2 | CDS | 18421549 | 18421787 | 18421549 | ID=cds.MS.gene55576.t1;Parent=MS.gene55576.t1 |
| chr6.2 | exon | 18420832 | 18420950 | 18420832 | ID=MS.gene55576.t1.exon6;Parent=MS.gene55576.t1 |
| chr6.2 | CDS | 18420832 | 18420950 | 18420832 | ID=cds.MS.gene55576.t1;Parent=MS.gene55576.t1 |
| chr6.2 | exon | 18420646 | 18420732 | 18420646 | ID=MS.gene55576.t1.exon7;Parent=MS.gene55576.t1 |
| chr6.2 | CDS | 18420646 | 18420732 | 18420646 | ID=cds.MS.gene55576.t1;Parent=MS.gene55576.t1 |
| chr6.2 | exon | 18420188 | 18420283 | 18420188 | ID=MS.gene55576.t1.exon8;Parent=MS.gene55576.t1 |
| chr6.2 | CDS | 18420188 | 18420283 | 18420188 | ID=cds.MS.gene55576.t1;Parent=MS.gene55576.t1 |
| Gene Sequence |
| Protein sequence |
