AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01402

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01402.t1 MTR_2g013120 98.015 655 13 0 1 655 1 655 0.0 1327
MS.gene01402.t1 MTR_3g099190 80.892 628 114 3 31 655 27 651 0.0 1066
MS.gene01402.t1 MTR_2g027220 73.684 608 155 2 27 633 10 613 0.0 946
MS.gene01402.t1 MTR_6g004200 24.644 491 330 11 84 550 6 480 1.54e-34 139
MS.gene01402.t1 MTR_7g069540 23.221 534 360 16 63 574 28 533 1.73e-17 86.7
MS.gene01402.t1 MTR_2g009330 21.780 528 347 17 79 574 47 540 5.42e-16 82.0
MS.gene01402.t1 MTR_5g046610 22.509 542 376 17 52 574 19 535 8.02e-16 81.6
MS.gene01402.t1 MTR_4g017200 22.385 545 373 17 52 574 19 535 8.90e-16 81.3
MS.gene01402.t1 MTR_2g015560 22.136 515 339 17 88 572 26 508 1.95e-14 77.0
MS.gene01402.t1 MTR_2g027200 50.000 62 12 1 555 616 1 43 5.53e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01402.t1 AT3G48560 83.959 586 94 0 70 655 85 670 0.0 1047
MS.gene01402.t1 AT5G17380 27.328 494 309 12 84 550 14 484 1.89e-46 173
MS.gene01402.t1 AT5G01330 24.427 524 320 17 88 574 36 520 2.51e-20 95.9
MS.gene01402.t1 AT5G01320 22.753 523 330 15 88 574 47 531 3.57e-18 89.0
MS.gene01402.t1 AT4G33070 22.519 524 330 15 88 574 51 535 5.56e-17 85.1
MS.gene01402.t1 AT5G54960 21.642 536 366 16 57 572 32 533 3.54e-16 82.8

Find 215 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGGGATCAATCGAATTT+TGG 0.232600 2.2:-69359466 MS.gene01402:CDS
CCCAATATGTTGAAGTTTGC+AGG 0.240705 2.2:-69358928 MS.gene01402:CDS
GATCAACCTATTAGGTTAAC+TGG 0.252439 2.2:-69359921 MS.gene01402:CDS
AATATTTCTTTCTCATTGGC+TGG 0.252481 2.2:+69358952 None:intergenic
TTCAACAACAATATCTTAAC+AGG 0.266547 2.2:+69359054 None:intergenic
GTGTTTGGGGAAGTGGAAAA+TGG 0.269439 2.2:+69360578 None:intergenic
CGCTATGGGATTTGGATTGC+CGG 0.275397 2.2:-69359190 MS.gene01402:CDS
ACCTGCAAACTTCAACATAT+TGG 0.275568 2.2:+69358927 None:intergenic
CGAATTGGGATCAACCTATT+AGG 0.276452 2.2:-69359929 MS.gene01402:CDS
ACAGATTGTGAGGTTGTTAT+TGG 0.278604 2.2:-69359853 MS.gene01402:CDS
GGTCTTGGCGCTATGGGATT+TGG 0.283365 2.2:-69359198 MS.gene01402:CDS
AGGTTTGATGATCGGGTTAC+TGG 0.289362 2.2:-69359606 MS.gene01402:CDS
TTGAGTTTGAAGGGAGTGTT+TGG 0.289702 2.2:+69360563 None:intergenic
CCTGCAAACTTCAACATATT+GGG 0.314608 2.2:+69358928 None:intergenic
CAGGTAGGTGTGAGCTCTAT+TGG 0.318135 2.2:+69358981 None:intergenic
TGCTAGTACTTTGATGGGGT+TGG 0.322703 2.2:-69359739 MS.gene01402:CDS
TGATTCTGAAAACATGGTTT+TGG 0.335333 2.2:+69360606 None:intergenic
AACAGGTCTCTGTTCCGAAT+TGG 0.338909 2.2:-69359944 MS.gene01402:CDS
TGTTCCAAATGTGCCTCTTT+CGG 0.341709 2.2:+69359873 None:intergenic
ATATACCCAGTTAACCTAAT+AGG 0.345011 2.2:+69359915 None:intergenic
ATTTGGATTGCCGGCTGCCA+TGG 0.358680 2.2:-69359181 MS.gene01402:CDS
GGGGAATATTTCTTTCTCAT+TGG 0.363131 2.2:+69358948 None:intergenic
GAAGGGAGTGTTTGGGGAAG+TGG 0.366408 2.2:+69360571 None:intergenic
GGCACCGAAAGAGGCACATT+TGG 0.369187 2.2:-69359877 MS.gene01402:CDS
GATCCATTTGCAGGAATCAT+TGG 0.370032 2.2:+69358778 None:intergenic
GGATTTGAAGTTGGCTTTGA+AGG 0.374802 2.2:-69359484 MS.gene01402:CDS
ACCTGTTGCTAGTACTTTGA+TGG 0.375227 2.2:-69359745 MS.gene01402:CDS
CAGCCTCATGTGTCGGTTTG+TGG 0.375821 2.2:-69359507 MS.gene01402:CDS
AGAGCGGTGGTTGAGTTTGA+AGG 0.379197 2.2:+69360553 None:intergenic
AAGCTTTATGATGAATGTTC+AGG 0.379274 2.2:-69359106 MS.gene01402:CDS
TCCTCAAAGGATCCATTTGC+AGG 0.389166 2.2:+69358769 None:intergenic
ATGTGCCTCTTTCGGTGCCT+TGG 0.389362 2.2:+69359881 None:intergenic
GGTTAACTGGGTATATGAAT+AGG 0.392870 2.2:-69359908 MS.gene01402:CDS
TTCTGCTGGTCTTGGCGCTA+TGG 0.393331 2.2:-69359205 MS.gene01402:CDS
ACAGCAGCTCCCATGGCAGC+CGG 0.395329 2.2:+69359171 None:intergenic
GATATTGATGCTGCTGAGAT+TGG 0.396931 2.2:-69359540 MS.gene01402:CDS
TGGGGTTAGGTTTGATGATC+GGG 0.402613 2.2:-69359613 MS.gene01402:CDS
GGTGTCTGCATCGCCACTTC+CGG 0.403895 2.2:-69360239 MS.gene01402:CDS
CGTCGAAGCACTCGAACGTC+AGG 0.404386 2.2:-69360414 MS.gene01402:CDS
GGGTTCGTTAGGGGCAAATC+GGG 0.405793 2.2:+69360457 None:intergenic
GCTAGTACTTTGATGGGGTT+GGG 0.408704 2.2:-69359738 MS.gene01402:CDS
TGGTTGACTTCTGCTGGTCT+TGG 0.411154 2.2:-69359213 MS.gene01402:CDS
ATAGAGAGTAAGCTTGATTT+CGG 0.412100 2.2:-69359432 MS.gene01402:CDS
GAGAATTCGTTGCAGATGCT+TGG 0.413491 2.2:-69359696 MS.gene01402:CDS
AACTGAATGATCAGAAAGTT+AGG 0.416856 2.2:-69359395 MS.gene01402:CDS
AGCCTCATGTGTCGGTTTGT+GGG 0.418936 2.2:-69359506 MS.gene01402:CDS
TTGGGGTTAGGTTTGATGAT+CGG 0.419793 2.2:-69359614 MS.gene01402:CDS
TGTGCCTCTTTCGGTGCCTT+GGG 0.420636 2.2:+69359882 None:intergenic
AGGCGGTTTGTTGAGTTAAC+CGG 0.420654 2.2:-69359771 MS.gene01402:CDS
ACAGGTCTCTGTTCCGAATT+GGG 0.423511 2.2:-69359943 MS.gene01402:CDS
GGGGTTCGTTAGGGGCAAAT+CGG 0.423916 2.2:+69360456 None:intergenic
TCCTCCGCAGTATGCTATAC+AGG 0.426227 2.2:-69359337 MS.gene01402:CDS
TGCATCGCCACTTCCGGCCC+AGG 0.426512 2.2:-69360233 MS.gene01402:CDS
ATTTCCATTGAAGCGCCGCC+AGG 0.431656 2.2:+69360368 None:intergenic
TGAGTTTGAAGGGAGTGTTT+GGG 0.434798 2.2:+69360564 None:intergenic
AATCGGGAAATGAATTGTTC+AGG 0.438196 2.2:+69360473 None:intergenic
CCATCACCGGTCAGGTTCCC+CGG 0.439113 2.2:-69360151 MS.gene01402:CDS
TCTGCTGGTCTTGGCGCTAT+GGG 0.442287 2.2:-69359204 MS.gene01402:CDS
GCTCGTTCCTCCGGTCTCCC+TGG 0.442490 2.2:-69360260 MS.gene01402:CDS
ACCTAAGGATATTCAACAAC+AGG 0.445153 2.2:-69359961 MS.gene01402:CDS
CAATAGAGCTCACACCTACC+TGG 0.446335 2.2:-69358980 MS.gene01402:CDS
TTTGGATTGCCGGCTGCCAT+GGG 0.447144 2.2:-69359180 MS.gene01402:CDS
GATTTGAAGTTGGCTTTGAA+GGG 0.448952 2.2:-69359483 MS.gene01402:CDS
GCTTATTGCCATCACCGGTC+AGG 0.450703 2.2:-69360159 MS.gene01402:CDS
TCTCATTGGCTGGGTCTCCC+AGG 0.453592 2.2:+69358962 None:intergenic
CCTGTTGCTAGTACTTTGAT+GGG 0.454512 2.2:-69359744 MS.gene01402:CDS
GTTGGGTTCCTATCCTAGTT+CGG 0.456275 2.2:-69359721 MS.gene01402:CDS
TGTTTGGGGAAGTGGAAAAT+GGG 0.456756 2.2:+69360579 None:intergenic
TGCAGGTGCTTGTGGTATAC+CGG 0.457670 2.2:-69358911 MS.gene01402:CDS
CATCAAGAAGGTAGGGGCCA+GGG 0.457929 2.2:+69358830 None:intergenic
ACATCAAGAAGGTAGGGGCC+AGG 0.461753 2.2:+69358829 None:intergenic
CATCAGTACCAATCATTCTC+CGG 0.464538 2.2:+69360132 None:intergenic
TATGATGAATGTTCAGGAGT+TGG 0.465434 2.2:-69359100 MS.gene01402:CDS
CAGGTTCCCCGGAGAATGAT+TGG 0.466447 2.2:-69360140 MS.gene01402:CDS
ATCAGTACCAATCATTCTCC+GGG 0.467400 2.2:+69360133 None:intergenic
CCGGGGAACCTGACCGGTGA+TGG 0.468521 2.2:+69360151 None:intergenic
TTAGGTATATCGATCAAAAC+AGG 0.472536 2.2:+69359978 None:intergenic
AGTAGGGTTGGAGATGGAAG+CGG 0.473325 2.2:+69360520 None:intergenic
TTGCAGATGCTTGGGATGCA+TGG 0.475365 2.2:-69359687 MS.gene01402:CDS
CCCATCAAAGTACTAGCAAC+AGG 0.475566 2.2:+69359744 None:intergenic
TTACCCTGGCGGCGCTTCAA+TGG 0.476078 2.2:-69360372 MS.gene01402:CDS
AACCACAATAGCGTCGGGAT+TGG 0.482109 2.2:+69359146 None:intergenic
ACCTGTTGTTGAATATCCTT+AGG 0.483487 2.2:+69359960 None:intergenic
GTAAGCTTGATTTCGGAGGT+TGG 0.484920 2.2:-69359425 MS.gene01402:CDS
AGGCAGTGGTTGACTTCTGC+TGG 0.485926 2.2:-69359219 MS.gene01402:CDS
CTAATAGGTTGATCCCAATT+CGG 0.489964 2.2:+69359930 None:intergenic
TTCTTGACGAGCTTACCAAT+GGG 0.490237 2.2:-69359314 MS.gene01402:CDS
TTGCCAATGATTCCTGCAAA+TGG 0.490698 2.2:-69358781 MS.gene01402:CDS
GATGCAGACACCAGGGAGAC+CGG 0.491267 2.2:+69360250 None:intergenic
ATATTTCTTTCTCATTGGCT+GGG 0.491931 2.2:+69358953 None:intergenic
GAGCGGTGGTTGAGTTTGAA+GGG 0.492843 2.2:+69360554 None:intergenic
GAGGGTTACGCTCGTTCCTC+CGG 0.496778 2.2:-69360269 MS.gene01402:CDS
CTCTTTGTCACACGAGCTGC+CGG 0.502154 2.2:+69358892 None:intergenic
CCACCACCAACATACAAAAC+AGG 0.502296 2.2:+69359819 None:intergenic
AGTAGCACCTGGGCCGGAAG+TGG 0.502445 2.2:+69360226 None:intergenic
TCCTGCAAATGGATCCTTTG+AGG 0.504950 2.2:-69358770 MS.gene01402:CDS
AGAATTCGTTGCAGATGCTT+GGG 0.506752 2.2:-69359695 MS.gene01402:CDS
GAAGTGGCGATGCAGACACC+AGG 0.511122 2.2:+69360242 None:intergenic
GGTTTGTGGGGATTTGAAGT+TGG 0.511799 2.2:-69359493 MS.gene01402:CDS
GCCCCTAACGAACCCCGAAA+AGG 0.516458 2.2:-69360449 MS.gene01402:CDS
GATCTAGTTACCTCAACAAT+CGG 0.519783 2.2:+69360095 None:intergenic
TCAAACTTCTTATAACTCAT+CGG 0.521295 2.2:+69359369 None:intergenic
ATATTGATGCTGCTGAGATT+GGG 0.522267 2.2:-69359539 MS.gene01402:CDS
ATTGGCAACAGCAGCTCCCA+TGG 0.524757 2.2:+69359164 None:intergenic
TGAATTGTAGCAAGGAATTG+AGG 0.527419 2.2:-69359791 MS.gene01402:CDS
TCAGGAGTTGGCTACTATCA+AGG 0.529463 2.2:-69359088 MS.gene01402:CDS
CATTCTCCGGGGAACCTGAC+CGG 0.531322 2.2:+69360145 None:intergenic
GTTCTTGACGAGCTTACCAA+TGG 0.533777 2.2:-69359315 MS.gene01402:CDS
GGGGAGGCTATCATAAGTAC+TGG 0.534253 2.2:-69359294 MS.gene01402:CDS
GCCTCATGTGTCGGTTTGTG+GGG 0.534297 2.2:-69359505 MS.gene01402:CDS
AACGCTTCATTCACTATCCT+AGG 0.535019 2.2:+69360029 None:intergenic
CTGACGAGATTAGTAGCACC+TGG 0.538331 2.2:+69360215 None:intergenic
ATTGGCTGGGTCTCCCAGGT+AGG 0.539147 2.2:+69358966 None:intergenic
TTGAAGTTTGCAGGTGCTTG+TGG 0.539914 2.2:-69358919 MS.gene01402:CDS
ACAAATGTCTTCGCTTACCC+TGG 0.542915 2.2:-69360386 MS.gene01402:CDS
ATCAAGAAGGTAGGGGCCAG+GGG 0.543925 2.2:+69358831 None:intergenic
ACAATGACATCAAGAAGGTA+GGG 0.544765 2.2:+69358823 None:intergenic
ATATCGATCAAAACAGGTCC+AGG 0.546128 2.2:+69359984 None:intergenic
TCAAGAAACTCCGATTGTTG+AGG 0.547823 2.2:-69360105 MS.gene01402:CDS
CTTGGGTATGGTTGTCCAGT+GGG 0.549540 2.2:-69359022 MS.gene01402:CDS
GTTGTTGAACAATCAACACT+TGG 0.549760 2.2:-69359040 MS.gene01402:CDS
GTTACCCAAGGCACCGAAAG+AGG 0.549898 2.2:-69359886 MS.gene01402:CDS
ATGTCAACCACAATAGCGTC+GGG 0.553806 2.2:+69359141 None:intergenic
ATTCTCATCCGAACTAGGAT+AGG 0.554840 2.2:+69359713 None:intergenic
CACATTTGGAACAGATTGTG+AGG 0.555893 2.2:-69359863 MS.gene01402:CDS
AACGAATTCTCATCCGAACT+AGG 0.556901 2.2:+69359708 None:intergenic
GTTCCGCTTATTGCCATCAC+CGG 0.557256 2.2:-69360164 MS.gene01402:CDS
GAGATTAGTAGCACCTGGGC+CGG 0.558857 2.2:+69360220 None:intergenic
AAGAACAAGATAATTATGCT+TGG 0.559558 2.2:+69360067 None:intergenic
GGTACAAGAGACCGAGGCAG+TGG 0.562380 2.2:-69359233 MS.gene01402:CDS
TGCAGATGCTTGGGATGCAT+GGG 0.563717 2.2:-69359686 MS.gene01402:CDS
GAGGACGTTACGAATGGCGG+TGG 0.567894 2.2:+69360325 None:intergenic
GCAGAAGTCAACCACTGCCT+CGG 0.568184 2.2:+69359222 None:intergenic
CAGAAAATGTTAGATACCCC+TGG 0.568513 2.2:-69358847 MS.gene01402:CDS
ATTTGAAGTTGGCTTTGAAG+GGG 0.570043 2.2:-69359482 MS.gene01402:CDS
CAATATGAACAATCTTCGCC+CGG 0.571633 2.2:+69359562 None:intergenic
ACTTATCCTGCCATCACCCT+CGG 0.572531 2.2:+69358738 None:intergenic
TACAATGACATCAAGAAGGT+AGG 0.574462 2.2:+69358822 None:intergenic
TCATAACCGAGGGTGATGGC+AGG 0.574956 2.2:-69358744 MS.gene01402:CDS
AAATGAATTGTTCAGGTGGG+GGG 0.576661 2.2:+69360480 None:intergenic
TGGTTGTCCAGTGGGAGGAT+CGG 0.577376 2.2:-69359014 MS.gene01402:CDS
GAGTTTGAAGGGAGTGTTTG+GGG 0.580053 2.2:+69360565 None:intergenic
GAACAATCAACACTTGGGTA+TGG 0.580544 2.2:-69359034 MS.gene01402:CDS
GAAATGAATTGTTCAGGTGG+GGG 0.580996 2.2:+69360479 None:intergenic
TATAGAACCGATCCTCCCAC+TGG 0.583559 2.2:+69359007 None:intergenic
GGAAATGAATTGTTCAGGTG+GGG 0.583724 2.2:+69360478 None:intergenic
TTAGCTTCTAGTGGTAGACC+TGG 0.583844 2.2:-69360002 MS.gene01402:CDS
CTCGGTTATGACATCCTCAA+AGG 0.584779 2.2:+69358756 None:intergenic
GGGTATGGTTGTCCAGTGGG+AGG 0.585047 2.2:-69359019 MS.gene01402:CDS
CGGCAGCTCGTGTGACAAAG+AGG 0.586144 2.2:-69358891 MS.gene01402:CDS
AGGTGGAATATTCGCTGCCG+AGG 0.587958 2.2:-69360288 MS.gene01402:CDS
TTCCACCTTGTTCGTGACGA+GGG 0.588122 2.2:+69360303 None:intergenic
GGTTTGATGATCGGGTTACT+GGG 0.588175 2.2:-69359605 MS.gene01402:CDS
TGGTAGTTTGAATTGTAGCA+AGG 0.589375 2.2:-69359799 MS.gene01402:CDS
GGTAAGTGATTCTGAAAACA+TGG 0.589849 2.2:+69360600 None:intergenic
GAGAGTAAGCTTGATTTCGG+AGG 0.590245 2.2:-69359429 MS.gene01402:CDS
TTGTTGAACAATCAACACTT+GGG 0.590968 2.2:-69359039 MS.gene01402:CDS
GCTATCATAAGTACTGGTGT+TGG 0.593538 2.2:-69359288 MS.gene01402:CDS
GGGAAATGAATTGTTCAGGT+GGG 0.594371 2.2:+69360477 None:intergenic
ATCAACCTATTAGGTTAACT+GGG 0.594575 2.2:-69359920 MS.gene01402:CDS
GTCCTCCCTCGTCACGAACA+AGG 0.595803 2.2:-69360308 MS.gene01402:CDS
GATGTCATAACCGAGGGTGA+TGG 0.596424 2.2:-69358748 MS.gene01402:CDS
CTGCAAACTTCAACATATTG+GGG 0.597132 2.2:+69358929 None:intergenic
TGCCAATCCCGACGCTATTG+TGG 0.597385 2.2:-69359148 MS.gene01402:CDS
ACTTATGATAGCCTCCCCAT+TGG 0.598564 2.2:+69359299 None:intergenic
ATTCCACCTTGTTCGTGACG+AGG 0.598895 2.2:+69360302 None:intergenic
AATAGAGCTCACACCTACCT+GGG 0.601839 2.2:-69358979 MS.gene01402:CDS
TCGGGTTACTGGGAAGCTTG+AGG 0.605782 2.2:-69359595 MS.gene01402:CDS
CTGTTGCTAGTACTTTGATG+GGG 0.606374 2.2:-69359743 MS.gene01402:CDS
GTGGTTGACATCGATGGTGA+TGG 0.607155 2.2:-69359129 MS.gene01402:CDS
GGCAGCTCGTGTGACAAAGA+GGG 0.609397 2.2:-69358890 MS.gene01402:CDS
CGGGAAATGAATTGTTCAGG+TGG 0.610484 2.2:+69360476 None:intergenic
GAATAAGCAGCCTCATGTGT+CGG 0.610801 2.2:-69359514 MS.gene01402:CDS
TTTCCATTGAAGCGCCGCCA+GGG 0.615322 2.2:+69360369 None:intergenic
TTGATGTTGATGATATACCT+AGG 0.619737 2.2:-69360046 MS.gene01402:CDS
TTTGAGGATGTCATAACCGA+GGG 0.621237 2.2:-69358754 MS.gene01402:CDS
ACGAGGGAGGACGTTACGAA+TGG 0.622770 2.2:+69360319 None:intergenic
GATGTCAACCACAATAGCGT+CGG 0.624097 2.2:+69359140 None:intergenic
GGTGGAATATTCGCTGCCGA+GGG 0.624227 2.2:-69360287 MS.gene01402:CDS
GGAGGAACGAGCGTAACCCT+CGG 0.628310 2.2:+69360271 None:intergenic
TGGTGAAGATGAAGAGATGG+TGG 0.629345 2.2:+69360643 None:intergenic
TTGTGGTGAAGATGAAGAGA+TGG 0.630262 2.2:+69360640 None:intergenic
CAATGACATCAAGAAGGTAG+GGG 0.631239 2.2:+69358824 None:intergenic
GGCAACACATGCTCTTGATG+CGG 0.634193 2.2:+69358799 None:intergenic
TGACGAGCTTACCAATGGGG+AGG 0.634568 2.2:-69359310 MS.gene01402:CDS
GACTGTTTATGCTAATTATG+CGG 0.636569 2.2:-69359664 MS.gene01402:CDS
GCAGACACCAGGGAGACCGG+AGG 0.638324 2.2:+69360253 None:intergenic
CACCTTGTTCGTGACGAGGG+AGG 0.638696 2.2:+69360306 None:intergenic
TTTATAGGTACAAGAGACCG+AGG 0.639559 2.2:-69359239 MS.gene01402:CDS
GTGTTGGACAACATCAGATG+TGG 0.643554 2.2:-69359272 MS.gene01402:CDS
AGTACTAGCAACAGGTACAC+CGG 0.645359 2.2:+69359752 None:intergenic
GCGGTACAATGACATCAAGA+AGG 0.647744 2.2:+69358818 None:intergenic
GCTATTGTGGTTGACATCGA+TGG 0.649650 2.2:-69359135 MS.gene01402:CDS
ACTTGGGTATGGTTGTCCAG+TGG 0.649969 2.2:-69359023 MS.gene01402:CDS
GTCGAAGCACTCGAACGTCA+GGG 0.650703 2.2:-69360413 MS.gene01402:CDS
AGGGAGGACGTTACGAATGG+CGG 0.657905 2.2:+69360322 None:intergenic
TGACCGGTGATGGCAATAAG+CGG 0.658648 2.2:+69360161 None:intergenic
TCCCCACAAACCGACACATG+AGG 0.664573 2.2:+69359504 None:intergenic
GGTGCTACTAATCTCGTCAG+TGG 0.668110 2.2:-69360212 MS.gene01402:CDS
ACCTGTATAGCATACTGCGG+AGG 0.674124 2.2:+69359336 None:intergenic
AGAGATGGTGGTTGTGAACG+CGG 0.674476 2.2:+69360655 None:intergenic
CTTTGAGGATGTCATAACCG+AGG 0.677141 2.2:-69358755 MS.gene01402:CDS
GTATATGAATAGGTTACCCA+AGG 0.677418 2.2:-69359898 MS.gene01402:CDS
TGTTGGACAACATCAGATGT+GGG 0.692591 2.2:-69359271 MS.gene01402:CDS
GACGTTCGAGTGCTTCGACG+AGG 0.694030 2.2:+69360417 None:intergenic
AAGTGGCGATGCAGACACCA+GGG 0.695335 2.2:+69360243 None:intergenic
AATGTCTTCGCTTACCCTGG+CGG 0.697805 2.2:-69360383 MS.gene01402:CDS
TCTTGACGAGCTTACCAATG+GGG 0.698334 2.2:-69359313 MS.gene01402:CDS
TCAACAACAATATCTTAACA+GGG 0.698879 2.2:+69359055 None:intergenic
CTCCCTCGTCACGAACAAGG+TGG 0.705691 2.2:-69360305 MS.gene01402:CDS
TGACGAGATTAGTAGCACCT+GGG 0.711329 2.2:+69360216 None:intergenic
ATTGTAGCAAGGAATTGAGG+CGG 0.713026 2.2:-69359788 MS.gene01402:CDS
GGAGTTGGCTACTATCAAGG+TGG 0.721822 2.2:-69359085 MS.gene01402:CDS
AGAACCTGTATAGCATACTG+CGG 0.744810 2.2:+69359333 None:intergenic
TCAGTACCAATCATTCTCCG+GGG 0.748029 2.2:+69360134 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGAACAAGATAATTATGCT+TGG + chr2.2:69359345-69359364 None:intergenic 25.0%
! TCAAACTTCTTATAACTCAT+CGG + chr2.2:69360043-69360062 None:intergenic 25.0%
! TCAACAACAATATCTTAACA+GGG + chr2.2:69360357-69360376 None:intergenic 25.0%
! TTCAACAACAATATCTTAAC+AGG + chr2.2:69360358-69360377 None:intergenic 25.0%
AACTGAATGATCAGAAAGTT+AGG - chr2.2:69360014-69360033 MS.gene01402:CDS 30.0%
AATATTTCTTTCTCATTGGC+TGG + chr2.2:69360460-69360479 None:intergenic 30.0%
ATAGAGAGTAAGCTTGATTT+CGG - chr2.2:69359977-69359996 MS.gene01402:CDS 30.0%
ATATACCCAGTTAACCTAAT+AGG + chr2.2:69359497-69359516 None:intergenic 30.0%
ATCAACCTATTAGGTTAACT+GGG - chr2.2:69359489-69359508 MS.gene01402:CDS 30.0%
GACTGTTTATGCTAATTATG+CGG - chr2.2:69359745-69359764 MS.gene01402:CDS 30.0%
TTAGGTATATCGATCAAAAC+AGG + chr2.2:69359434-69359453 None:intergenic 30.0%
TTGTTGAACAATCAACACTT+GGG - chr2.2:69360370-69360389 MS.gene01402:CDS 30.0%
! AAGAAACCTGTTTTGTATGT+TGG - chr2.2:69359584-69359603 MS.gene01402:CDS 30.0%
! AAGCTTTATGATGAATGTTC+AGG - chr2.2:69360303-69360322 MS.gene01402:CDS 30.0%
! ATATTTCTTTCTCATTGGCT+GGG + chr2.2:69360459-69360478 None:intergenic 30.0%
!! AATCGAATTTTGGAGAGTAA+TGG - chr2.2:69359953-69359972 MS.gene01402:CDS 30.0%
!! ATCGAATTTTGGAGAGTAAT+GGG - chr2.2:69359954-69359973 MS.gene01402:CDS 30.0%
!! TGATTCTGAAAACATGGTTT+TGG + chr2.2:69358806-69358825 None:intergenic 30.0%
!! TTGATGTTGATGATATACCT+AGG - chr2.2:69359363-69359382 MS.gene01402:CDS 30.0%
!!! TGTTTTGATCGATATACCTA+AGG - chr2.2:69359433-69359452 MS.gene01402:CDS 30.0%
AATCGGGAAATGAATTGTTC+AGG + chr2.2:69358939-69358958 None:intergenic 35.0%
ACAATGACATCAAGAAGGTA+GGG + chr2.2:69360589-69360608 None:intergenic 35.0%
ACAGATTGTGAGGTTGTTAT+TGG - chr2.2:69359556-69359575 MS.gene01402:CDS 35.0%
ACCTAAGGATATTCAACAAC+AGG - chr2.2:69359448-69359467 MS.gene01402:CDS 35.0%
ACCTGCAAACTTCAACATAT+TGG + chr2.2:69360485-69360504 None:intergenic 35.0%
ACCTGTTGTTGAATATCCTT+AGG + chr2.2:69359452-69359471 None:intergenic 35.0%
ATATTGATGCTGCTGAGATT+GGG - chr2.2:69359870-69359889 MS.gene01402:CDS 35.0%
CCTGCAAACTTCAACATATT+GGG + chr2.2:69360484-69360503 None:intergenic 35.0%
CTGCAAACTTCAACATATTG+GGG + chr2.2:69360483-69360502 None:intergenic 35.0%
GATCAACCTATTAGGTTAAC+TGG - chr2.2:69359488-69359507 MS.gene01402:CDS 35.0%
GATCTAGTTACCTCAACAAT+CGG + chr2.2:69359317-69359336 None:intergenic 35.0%
GGGGAATATTTCTTTCTCAT+TGG + chr2.2:69360464-69360483 None:intergenic 35.0%
GGTTAACTGGGTATATGAAT+AGG - chr2.2:69359501-69359520 MS.gene01402:CDS 35.0%
GTATATGAATAGGTTACCCA+AGG - chr2.2:69359511-69359530 MS.gene01402:CDS 35.0%
GTTGTTGAACAATCAACACT+TGG - chr2.2:69360369-69360388 MS.gene01402:CDS 35.0%
TACAATGACATCAAGAAGGT+AGG + chr2.2:69360590-69360609 None:intergenic 35.0%
TATGATGAATGTTCAGGAGT+TGG - chr2.2:69360309-69360328 MS.gene01402:CDS 35.0%
TGAATTGTAGCAAGGAATTG+AGG - chr2.2:69359618-69359637 MS.gene01402:CDS 35.0%
TGGTAGTTTGAATTGTAGCA+AGG - chr2.2:69359610-69359629 MS.gene01402:CDS 35.0%
! AAACCTGTTTTGTATGTTGG+TGG - chr2.2:69359587-69359606 MS.gene01402:CDS 35.0%
! GGTAAGTGATTCTGAAAACA+TGG + chr2.2:69358812-69358831 None:intergenic 35.0%
!! ATTTGAAGTTGGCTTTGAAG+GGG - chr2.2:69359927-69359946 MS.gene01402:CDS 35.0%
!! CTAATAGGTTGATCCCAATT+CGG + chr2.2:69359482-69359501 None:intergenic 35.0%
!! GATTTGAAGTTGGCTTTGAA+GGG - chr2.2:69359926-69359945 MS.gene01402:CDS 35.0%
!! GCGTTTTTATTAGCTTCTAG+TGG - chr2.2:69359398-69359417 MS.gene01402:CDS 35.0%
!!! CTGAAAACATGGTTTTGGTT+TGG + chr2.2:69358801-69358820 None:intergenic 35.0%
!!! TTTTGGTTTGGAAGTGATTG+TGG + chr2.2:69358789-69358808 None:intergenic 35.0%
AAATGAATTGTTCAGGTGGG+GGG + chr2.2:69358932-69358951 None:intergenic 40.0%
AACGAATTCTCATCCGAACT+AGG + chr2.2:69359704-69359723 None:intergenic 40.0%
AACGCTTCATTCACTATCCT+AGG + chr2.2:69359383-69359402 None:intergenic 40.0%
ACCTGTTGCTAGTACTTTGA+TGG - chr2.2:69359664-69359683 MS.gene01402:CDS 40.0%
AGAACCTGTATAGCATACTG+CGG + chr2.2:69360079-69360098 None:intergenic 40.0%
AGAATTCGTTGCAGATGCTT+GGG - chr2.2:69359714-69359733 MS.gene01402:CDS 40.0%
ATATCGATCAAAACAGGTCC+AGG + chr2.2:69359428-69359447 None:intergenic 40.0%
ATCAGTACCAATCATTCTCC+GGG + chr2.2:69359279-69359298 None:intergenic 40.0%
ATTCTCATCCGAACTAGGAT+AGG + chr2.2:69359699-69359718 None:intergenic 40.0%
ATTGTAGCAAGGAATTGAGG+CGG - chr2.2:69359621-69359640 MS.gene01402:CDS 40.0%
CAATATGAACAATCTTCGCC+CGG + chr2.2:69359850-69359869 None:intergenic 40.0%
CAATGACATCAAGAAGGTAG+GGG + chr2.2:69360588-69360607 None:intergenic 40.0%
CAGAAAATGTTAGATACCCC+TGG - chr2.2:69360562-69360581 MS.gene01402:CDS 40.0%
CATCAGTACCAATCATTCTC+CGG + chr2.2:69359280-69359299 None:intergenic 40.0%
CCCAATATGTTGAAGTTTGC+AGG - chr2.2:69360481-69360500 MS.gene01402:CDS 40.0%
CCTGTTGCTAGTACTTTGAT+GGG - chr2.2:69359665-69359684 MS.gene01402:CDS 40.0%
CGAATTGGGATCAACCTATT+AGG - chr2.2:69359480-69359499 MS.gene01402:CDS 40.0%
CTGTTGCTAGTACTTTGATG+GGG - chr2.2:69359666-69359685 MS.gene01402:CDS 40.0%
GAAATGAATTGTTCAGGTGG+GGG + chr2.2:69358933-69358952 None:intergenic 40.0%
GAACAATCAACACTTGGGTA+TGG - chr2.2:69360375-69360394 MS.gene01402:CDS 40.0%
GATATTGATGCTGCTGAGAT+TGG - chr2.2:69359869-69359888 MS.gene01402:CDS 40.0%
GATCCATTTGCAGGAATCAT+TGG + chr2.2:69360634-69360653 None:intergenic 40.0%
GGAAATGAATTGTTCAGGTG+GGG + chr2.2:69358934-69358953 None:intergenic 40.0%
GGGAAATGAATTGTTCAGGT+GGG + chr2.2:69358935-69358954 None:intergenic 40.0%
TCAAGAAACTCCGATTGTTG+AGG - chr2.2:69359304-69359323 MS.gene01402:CDS 40.0%
TGTTCCAAATGTGCCTCTTT+CGG + chr2.2:69359539-69359558 None:intergenic 40.0%
TGTTGGACAACATCAGATGT+GGG - chr2.2:69360138-69360157 MS.gene01402:CDS 40.0%
TGTTTGGGGAAGTGGAAAAT+GGG + chr2.2:69358833-69358852 None:intergenic 40.0%
TTCTTGACGAGCTTACCAAT+GGG - chr2.2:69360095-69360114 MS.gene01402:CDS 40.0%
TTGCCAATGATTCCTGCAAA+TGG - chr2.2:69360628-69360647 MS.gene01402:CDS 40.0%
TTGTGGTGAAGATGAAGAGA+TGG + chr2.2:69358772-69358791 None:intergenic 40.0%
TTTATAGGTACAAGAGACCG+AGG - chr2.2:69360170-69360189 MS.gene01402:CDS 40.0%
TTTGAGGATGTCATAACCGA+GGG - chr2.2:69360655-69360674 MS.gene01402:CDS 40.0%
! AGTGATCTTTTGCTTGCGTT+TGG - chr2.2:69359776-69359795 MS.gene01402:CDS 40.0%
! CACATTTGGAACAGATTGTG+AGG - chr2.2:69359546-69359565 MS.gene01402:CDS 40.0%
! GAAGGGGATCAATCGAATTT+TGG - chr2.2:69359943-69359962 MS.gene01402:CDS 40.0%
! GTGATCTTTTGCTTGCGTTT+GGG - chr2.2:69359777-69359796 MS.gene01402:CDS 40.0%
! TGATCTTTTGCTTGCGTTTG+GGG - chr2.2:69359778-69359797 MS.gene01402:CDS 40.0%
! TTGGGGTTAGGTTTGATGAT+CGG - chr2.2:69359795-69359814 MS.gene01402:CDS 40.0%
! TTTTCTGAATCGCTGCTCTA+AGG + chr2.2:69360549-69360568 None:intergenic 40.0%
!! GCTATCATAAGTACTGGTGT+TGG - chr2.2:69360121-69360140 MS.gene01402:CDS 40.0%
!! GGATTTGAAGTTGGCTTTGA+AGG - chr2.2:69359925-69359944 MS.gene01402:CDS 40.0%
!! TGAGTTTGAAGGGAGTGTTT+GGG + chr2.2:69358848-69358867 None:intergenic 40.0%
!! TTGAGTTTGAAGGGAGTGTT+TGG + chr2.2:69358849-69358868 None:intergenic 40.0%
!!! AGTGGTTTTTTGAGTAGGGT+TGG + chr2.2:69358904-69358923 None:intergenic 40.0%
!!! ATGGGAGTGGTTTTTTGAGT+AGG + chr2.2:69358909-69358928 None:intergenic 40.0%
!!! TGGGAGTGGTTTTTTGAGTA+GGG + chr2.2:69358908-69358927 None:intergenic 40.0%
!!! TTTTTGAGTAGGGTTGGAGA+TGG + chr2.2:69358898-69358917 None:intergenic 40.0%
AACAGGTCTCTGTTCCGAAT+TGG - chr2.2:69359465-69359484 MS.gene01402:CDS 45.0%
AATAGAGCTCACACCTACCT+GGG - chr2.2:69360430-69360449 MS.gene01402:CDS 45.0%
ACAAATGTCTTCGCTTACCC+TGG - chr2.2:69359023-69359042 MS.gene01402:CDS 45.0%
ACAGGTCTCTGTTCCGAATT+GGG - chr2.2:69359466-69359485 MS.gene01402:CDS 45.0%
ACTTATGATAGCCTCCCCAT+TGG + chr2.2:69360113-69360132 None:intergenic 45.0%
AGTACTAGCAACAGGTACAC+CGG + chr2.2:69359660-69359679 None:intergenic 45.0%
ATGTCAACCACAATAGCGTC+GGG + chr2.2:69360271-69360290 None:intergenic 45.0%
CCACCACCAACATACAAAAC+AGG + chr2.2:69359593-69359612 None:intergenic 45.0%
CGGGAAATGAATTGTTCAGG+TGG + chr2.2:69358936-69358955 None:intergenic 45.0%
CTCGGTTATGACATCCTCAA+AGG + chr2.2:69360656-69360675 None:intergenic 45.0%
GAATAAGCAGCCTCATGTGT+CGG - chr2.2:69359895-69359914 MS.gene01402:CDS 45.0%
GAGAATTCGTTGCAGATGCT+TGG - chr2.2:69359713-69359732 MS.gene01402:CDS 45.0%
GAGAGTAAGCTTGATTTCGG+AGG - chr2.2:69359980-69359999 MS.gene01402:CDS 45.0%
GATGTCAACCACAATAGCGT+CGG + chr2.2:69360272-69360291 None:intergenic 45.0%
GCGGTACAATGACATCAAGA+AGG + chr2.2:69360594-69360613 None:intergenic 45.0%
GCTAGTACTTTGATGGGGTT+GGG - chr2.2:69359671-69359690 MS.gene01402:CDS 45.0%
GCTATTGTGGTTGACATCGA+TGG - chr2.2:69360274-69360293 MS.gene01402:CDS 45.0%
GTAAGCTTGATTTCGGAGGT+TGG - chr2.2:69359984-69360003 MS.gene01402:CDS 45.0%
GTGTTGGACAACATCAGATG+TGG - chr2.2:69360137-69360156 MS.gene01402:CDS 45.0%
GTGTTTGGGGAAGTGGAAAA+TGG + chr2.2:69358834-69358853 None:intergenic 45.0%
GTTCTTGACGAGCTTACCAA+TGG - chr2.2:69360094-69360113 MS.gene01402:CDS 45.0%
GTTGGGTTCCTATCCTAGTT+CGG - chr2.2:69359688-69359707 MS.gene01402:CDS 45.0%
TCAGGAGTTGGCTACTATCA+AGG - chr2.2:69360321-69360340 MS.gene01402:CDS 45.0%
TCAGTACCAATCATTCTCCG+GGG + chr2.2:69359278-69359297 None:intergenic 45.0%
TCCTCAAAGGATCCATTTGC+AGG + chr2.2:69360643-69360662 None:intergenic 45.0%
TCCTGCAAATGGATCCTTTG+AGG - chr2.2:69360639-69360658 MS.gene01402:CDS 45.0%
TCTTGACGAGCTTACCAATG+GGG - chr2.2:69360096-69360115 MS.gene01402:CDS 45.0%
TGACGAGATTAGTAGCACCT+GGG + chr2.2:69359196-69359215 None:intergenic 45.0%
TGCTAGTACTTTGATGGGGT+TGG - chr2.2:69359670-69359689 MS.gene01402:CDS 45.0%
TGGTGAAGATGAAGAGATGG+TGG + chr2.2:69358769-69358788 None:intergenic 45.0%
TTAGCTTCTAGTGGTAGACC+TGG - chr2.2:69359407-69359426 MS.gene01402:CDS 45.0%
TTGAAGTTTGCAGGTGCTTG+TGG - chr2.2:69360490-69360509 MS.gene01402:CDS 45.0%
! AGGTTTGATGATCGGGTTAC+TGG - chr2.2:69359803-69359822 MS.gene01402:CDS 45.0%
! CCCATCAAAGTACTAGCAAC+AGG + chr2.2:69359668-69359687 None:intergenic 45.0%
! CTTTGAGGATGTCATAACCG+AGG - chr2.2:69360654-69360673 MS.gene01402:CDS 45.0%
! GGTTTGATGATCGGGTTACT+GGG - chr2.2:69359804-69359823 MS.gene01402:CDS 45.0%
! GGTTTGTGGGGATTTGAAGT+TGG - chr2.2:69359916-69359935 MS.gene01402:CDS 45.0%
! TGGGGTTAGGTTTGATGATC+GGG - chr2.2:69359796-69359815 MS.gene01402:CDS 45.0%
!! AAGCGGAGATTTTGAGAGAG+CGG + chr2.2:69358875-69358894 None:intergenic 45.0%
!! AGGCGGTTTGTTGAGTTAAC+CGG - chr2.2:69359638-69359657 MS.gene01402:CDS 45.0%
!! CCTGTTTTGTATGTTGGTGG+TGG - chr2.2:69359590-69359609 MS.gene01402:CDS 45.0%
!! GAGTTTGAAGGGAGTGTTTG+GGG + chr2.2:69358847-69358866 None:intergenic 45.0%
!! TGTGGGCTGCTCAGTTTTAT+AGG - chr2.2:69360155-69360174 MS.gene01402:CDS 45.0%
!! TTTTGCTTGCGTTTGGGGTT+AGG - chr2.2:69359783-69359802 MS.gene01402:CDS 45.0%
AATGTCTTCGCTTACCCTGG+CGG - chr2.2:69359026-69359045 MS.gene01402:CDS 50.0%
AATTGTTCAGGTGGGGGGAT+GGG + chr2.2:69358927-69358946 None:intergenic 50.0%
ACCTGTATAGCATACTGCGG+AGG + chr2.2:69360076-69360095 None:intergenic 50.0%
ACTTATCCTGCCATCACCCT+CGG + chr2.2:69360674-69360693 None:intergenic 50.0%
ACTTGGGTATGGTTGTCCAG+TGG - chr2.2:69360386-69360405 MS.gene01402:CDS 50.0%
AGAGCGGTGGTTGAGTTTGA+AGG + chr2.2:69358859-69358878 None:intergenic 50.0%
AGTAGGGTTGGAGATGGAAG+CGG + chr2.2:69358892-69358911 None:intergenic 50.0%
ATTCCACCTTGTTCGTGACG+AGG + chr2.2:69359110-69359129 None:intergenic 50.0%
CAATAGAGCTCACACCTACC+TGG - chr2.2:69360429-69360448 MS.gene01402:CDS 50.0%
CAGGTAGGTGTGAGCTCTAT+TGG + chr2.2:69360431-69360450 None:intergenic 50.0%
CGCTATGGGATTTGGATTGC+CGG - chr2.2:69360219-69360238 MS.gene01402:CDS 50.0%
CTGACGAGATTAGTAGCACC+TGG + chr2.2:69359197-69359216 None:intergenic 50.0%
CTTGGGTATGGTTGTCCAGT+GGG - chr2.2:69360387-69360406 MS.gene01402:CDS 50.0%
GAGCGGTGGTTGAGTTTGAA+GGG + chr2.2:69358858-69358877 None:intergenic 50.0%
GATGTCATAACCGAGGGTGA+TGG - chr2.2:69360661-69360680 MS.gene01402:CDS 50.0%
GGAGTTGGCTACTATCAAGG+TGG - chr2.2:69360324-69360343 MS.gene01402:CDS 50.0%
GGCAACACATGCTCTTGATG+CGG + chr2.2:69360613-69360632 None:intergenic 50.0%
GGGGAGGCTATCATAAGTAC+TGG - chr2.2:69360115-69360134 MS.gene01402:CDS 50.0%
GTGGTTGACATCGATGGTGA+TGG - chr2.2:69360280-69360299 MS.gene01402:CDS 50.0%
GTTCCGCTTATTGCCATCAC+CGG - chr2.2:69359245-69359264 MS.gene01402:CDS 50.0%
TATAGAACCGATCCTCCCAC+TGG + chr2.2:69360405-69360424 None:intergenic 50.0%
TCCTCCGCAGTATGCTATAC+AGG - chr2.2:69360072-69360091 MS.gene01402:CDS 50.0%
TGCAGATGCTTGGGATGCAT+GGG - chr2.2:69359723-69359742 MS.gene01402:CDS 50.0%
TGCAGGTGCTTGTGGTATAC+CGG - chr2.2:69360498-69360517 MS.gene01402:CDS 50.0%
TTCCACCTTGTTCGTGACGA+GGG + chr2.2:69359109-69359128 None:intergenic 50.0%
TTGCAGATGCTTGGGATGCA+TGG - chr2.2:69359722-69359741 MS.gene01402:CDS 50.0%
! AACCACAATAGCGTCGGGAT+TGG + chr2.2:69360266-69360285 None:intergenic 50.0%
! AGAGATGGTGGTTGTGAACG+CGG + chr2.2:69358757-69358776 None:intergenic 50.0%
! AGGATATCTGCGCCTTTTCG+GGG + chr2.2:69358975-69358994 None:intergenic 50.0%
! CGAGGATATCTGCGCCTTTT+CGG + chr2.2:69358977-69358996 None:intergenic 50.0%
! GAGGATATCTGCGCCTTTTC+GGG + chr2.2:69358976-69358995 None:intergenic 50.0%
! TGACCGGTGATGGCAATAAG+CGG + chr2.2:69359251-69359270 None:intergenic 50.0%
! TGGTTGACTTCTGCTGGTCT+TGG - chr2.2:69360196-69360215 MS.gene01402:CDS 50.0%
!! AGCCTCATGTGTCGGTTTGT+GGG - chr2.2:69359903-69359922 MS.gene01402:CDS 50.0%
!! GGTGCTACTAATCTCGTCAG+TGG - chr2.2:69359197-69359216 MS.gene01402:CDS 50.0%
AAGTGGCGATGCAGACACCA+GGG + chr2.2:69359169-69359188 None:intergenic 55.0%
ACATCAAGAAGGTAGGGGCC+AGG + chr2.2:69360583-69360602 None:intergenic 55.0%
ACGAGGGAGGACGTTACGAA+TGG + chr2.2:69359093-69359112 None:intergenic 55.0%
AGGGAGGACGTTACGAATGG+CGG + chr2.2:69359090-69359109 None:intergenic 55.0%
AGGTGGAATATTCGCTGCCG+AGG - chr2.2:69359121-69359140 MS.gene01402:CDS 55.0%
ATCAAGAAGGTAGGGGCCAG+GGG + chr2.2:69360581-69360600 None:intergenic 55.0%
ATTGGCAACAGCAGCTCCCA+TGG + chr2.2:69360248-69360267 None:intergenic 55.0%
CAGGTTCCCCGGAGAATGAT+TGG - chr2.2:69359269-69359288 MS.gene01402:CDS 55.0%
CATCAAGAAGGTAGGGGCCA+GGG + chr2.2:69360582-69360601 None:intergenic 55.0%
CTCTTTGTCACACGAGCTGC+CGG + chr2.2:69360520-69360539 None:intergenic 55.0%
GAATTGTTCAGGTGGGGGGA+TGG + chr2.2:69358928-69358947 None:intergenic 55.0%
GAGATTAGTAGCACCTGGGC+CGG + chr2.2:69359192-69359211 None:intergenic 55.0%
GCAGAAGTCAACCACTGCCT+CGG + chr2.2:69360190-69360209 None:intergenic 55.0%
GCTTATTGCCATCACCGGTC+AGG - chr2.2:69359250-69359269 MS.gene01402:CDS 55.0%
GGCAGCTCGTGTGACAAAGA+GGG - chr2.2:69360519-69360538 MS.gene01402:CDS 55.0%
GGGGTTCGTTAGGGGCAAAT+CGG + chr2.2:69358956-69358975 None:intergenic 55.0%
GGGTTCGTTAGGGGCAAATC+GGG + chr2.2:69358955-69358974 None:intergenic 55.0%
GGTCTTGGCGCTATGGGATT+TGG - chr2.2:69360211-69360230 MS.gene01402:CDS 55.0%
GGTGGAATATTCGCTGCCGA+GGG - chr2.2:69359122-69359141 MS.gene01402:CDS 55.0%
TCCCCACAAACCGACACATG+AGG + chr2.2:69359908-69359927 None:intergenic 55.0%
TCGGGTTACTGGGAAGCTTG+AGG - chr2.2:69359814-69359833 MS.gene01402:CDS 55.0%
TGACGAGCTTACCAATGGGG+AGG - chr2.2:69360099-69360118 MS.gene01402:CDS 55.0%
TGCCAATCCCGACGCTATTG+TGG - chr2.2:69360261-69360280 MS.gene01402:CDS 55.0%
TGGTTGTCCAGTGGGAGGAT+CGG - chr2.2:69360395-69360414 MS.gene01402:CDS 55.0%
! AGCTTGAGGCTTTTGCGAGC+CGG - chr2.2:69359828-69359847 MS.gene01402:CDS 55.0%
! AGGCAGTGGTTGACTTCTGC+TGG - chr2.2:69360190-69360209 MS.gene01402:CDS 55.0%
! ATTTGGATTGCCGGCTGCCA+TGG - chr2.2:69360228-69360247 MS.gene01402:CDS 55.0%
! GAACGCGGTTTTTGCAGCAG+TGG + chr2.2:69358742-69358761 None:intergenic 55.0%
! GGCACCGAAAGAGGCACATT+TGG - chr2.2:69359532-69359551 MS.gene01402:CDS 55.0%
! GTCGAAGCACTCGAACGTCA+GGG - chr2.2:69358996-69359015 MS.gene01402:CDS 55.0%
! TCATAACCGAGGGTGATGGC+AGG - chr2.2:69360665-69360684 MS.gene01402:CDS 55.0%
! TTTGGATTGCCGGCTGCCAT+GGG - chr2.2:69360229-69360248 MS.gene01402:CDS 55.0%
!! ATGTGCCTCTTTCGGTGCCT+TGG + chr2.2:69359531-69359550 None:intergenic 55.0%
!! ATTTCCATTGAAGCGCCGCC+AGG + chr2.2:69359044-69359063 None:intergenic 55.0%
!! CAGCCTCATGTGTCGGTTTG+TGG - chr2.2:69359902-69359921 MS.gene01402:CDS 55.0%
!! CGCCTTTTCGGGGTTCGTTA+GGG + chr2.2:69358965-69358984 None:intergenic 55.0%
!! CGGAGATTTTGAGAGAGCGG+TGG + chr2.2:69358872-69358891 None:intergenic 55.0%
!! GAAGGGAGTGTTTGGGGAAG+TGG + chr2.2:69358841-69358860 None:intergenic 55.0%
!! GCCTCATGTGTCGGTTTGTG+GGG - chr2.2:69359904-69359923 MS.gene01402:CDS 55.0%
!! GCCTTTTCGGGGTTCGTTAG+GGG + chr2.2:69358964-69358983 None:intergenic 55.0%
!! GTTACCCAAGGCACCGAAAG+AGG - chr2.2:69359523-69359542 MS.gene01402:CDS 55.0%
!! TCTGCTGGTCTTGGCGCTAT+GGG - chr2.2:69360205-69360224 MS.gene01402:CDS 55.0%
!! TGTGCCTCTTTCGGTGCCTT+GGG + chr2.2:69359530-69359549 None:intergenic 55.0%
!! TTCTGCTGGTCTTGGCGCTA+TGG - chr2.2:69360204-69360223 MS.gene01402:CDS 55.0%
!! TTTCCATTGAAGCGCCGCCA+GGG + chr2.2:69359043-69359062 None:intergenic 55.0%
ATTGGCTGGGTCTCCCAGGT+AGG + chr2.2:69360446-69360465 None:intergenic 60.0%
CACCTTGTTCGTGACGAGGG+AGG + chr2.2:69359106-69359125 None:intergenic 60.0%
CATTCTCCGGGGAACCTGAC+CGG + chr2.2:69359267-69359286 None:intergenic 60.0%
CGGCAGCTCGTGTGACAAAG+AGG - chr2.2:69360518-69360537 MS.gene01402:CDS 60.0%
CTCCCTCGTCACGAACAAGG+TGG - chr2.2:69359104-69359123 MS.gene01402:CDS 60.0%
GAAGTGGCGATGCAGACACC+AGG + chr2.2:69359170-69359189 None:intergenic 60.0%
GACGTTCGAGTGCTTCGACG+AGG + chr2.2:69358995-69359014 None:intergenic 60.0%
GAGGACGTTACGAATGGCGG+TGG + chr2.2:69359087-69359106 None:intergenic 60.0%
GAGGGTTACGCTCGTTCCTC+CGG - chr2.2:69359140-69359159 MS.gene01402:CDS 60.0%
GATGCAGACACCAGGGAGAC+CGG + chr2.2:69359162-69359181 None:intergenic 60.0%
GCCCCTAACGAACCCCGAAA+AGG - chr2.2:69358960-69358979 MS.gene01402:CDS 60.0%
GGAGGAACGAGCGTAACCCT+CGG + chr2.2:69359141-69359160 None:intergenic 60.0%
GGGTATGGTTGTCCAGTGGG+AGG - chr2.2:69360390-69360409 MS.gene01402:CDS 60.0%
GGTACAAGAGACCGAGGCAG+TGG - chr2.2:69360176-69360195 MS.gene01402:CDS 60.0%
GGTGTCTGCATCGCCACTTC+CGG - chr2.2:69359170-69359189 MS.gene01402:CDS 60.0%
GTCCTCCCTCGTCACGAACA+AGG - chr2.2:69359101-69359120 MS.gene01402:CDS 60.0%
TTACCCTGGCGGCGCTTCAA+TGG - chr2.2:69359037-69359056 MS.gene01402:CDS 60.0%
! CGTCGAAGCACTCGAACGTC+AGG - chr2.2:69358995-69359014 MS.gene01402:CDS 60.0%
! GCTTGAGGCTTTTGCGAGCC+GGG - chr2.2:69359829-69359848 MS.gene01402:CDS 60.0%
! TCTCATTGGCTGGGTCTCCC+AGG + chr2.2:69360450-69360469 None:intergenic 60.0%
!! GCGCCTTTTCGGGGTTCGTT+AGG + chr2.2:69358966-69358985 None:intergenic 60.0%
ACAGCAGCTCCCATGGCAGC+CGG + chr2.2:69360241-69360260 None:intergenic 65.0%
AGTAGCACCTGGGCCGGAAG+TGG + chr2.2:69359186-69359205 None:intergenic 65.0%
CCATCACCGGTCAGGTTCCC+CGG - chr2.2:69359258-69359277 MS.gene01402:CDS 65.0%
TTCAGGTGGGGGGATGGGAG+TGG + chr2.2:69358922-69358941 None:intergenic 65.0%
CCGGGGAACCTGACCGGTGA+TGG + chr2.2:69359261-69359280 None:intergenic 70.0%
GCAGACACCAGGGAGACCGG+AGG + chr2.2:69359159-69359178 None:intergenic 70.0%
GCTCGTTCCTCCGGTCTCCC+TGG - chr2.2:69359149-69359168 MS.gene01402:CDS 70.0%
TGCATCGCCACTTCCGGCCC+AGG - chr2.2:69359176-69359195 MS.gene01402:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 69358732 69360699 69358732 ID=MS.gene01402
chr2.2 mRNA 69358732 69360699 69358732 ID=MS.gene01402.t1;Parent=MS.gene01402
chr2.2 exon 69358732 69360699 69358732 ID=MS.gene01402.t1.exon1;Parent=MS.gene01402.t1
chr2.2 CDS 69358732 69360699 69358732 ID=cds.MS.gene01402.t1;Parent=MS.gene01402.t1
Gene Sequence

>MS.gene01402

ATGGCAGCCACTGCTGCAAAAACCGCGTTCACAACCACCATCTCTTCATCTTCACCACAATCACTTCCAAACCAAAACCATGTTTTCAGAATCACTTACCCATTTTCCACTTCCCCAAACACTCCCTTCAAACTCAACCACCGCTCTCTCAAAATCTCCGCTTCCATCTCCAACCCTACTCAAAAAACCACTCCCATCCCCCCACCTGAACAATTCATTTCCCGATTTGCCCCTAACGAACCCCGAAAAGGCGCAGATATCCTCGTCGAAGCACTCGAACGTCAGGGAGTTACAAATGTCTTCGCTTACCCTGGCGGCGCTTCAATGGAAATTCATCAAGCACTCACGCGCTCCACCGCCATTCGTAACGTCCTCCCTCGTCACGAACAAGGTGGAATATTCGCTGCCGAGGGTTACGCTCGTTCCTCCGGTCTCCCTGGTGTCTGCATCGCCACTTCCGGCCCAGGTGCTACTAATCTCGTCAGTGGACTTGCTGATGCTATGCTTGACAGTGTTCCGCTTATTGCCATCACCGGTCAGGTTCCCCGGAGAATGATTGGTACTGATGCTTTTCAAGAAACTCCGATTGTTGAGGTAACTAGATCAATCACCAAGCATAATTATCTTGTTCTTGATGTTGATGATATACCTAGGATAGTGAATGAAGCGTTTTTATTAGCTTCTAGTGGTAGACCTGGACCTGTTTTGATCGATATACCTAAGGATATTCAACAACAGGTCTCTGTTCCGAATTGGGATCAACCTATTAGGTTAACTGGGTATATGAATAGGTTACCCAAGGCACCGAAAGAGGCACATTTGGAACAGATTGTGAGGTTGTTATTGGAGTCTAAGAAACCTGTTTTGTATGTTGGTGGTGGTAGTTTGAATTGTAGCAAGGAATTGAGGCGGTTTGTTGAGTTAACCGGTGTACCTGTTGCTAGTACTTTGATGGGGTTGGGTTCCTATCCTAGTTCGGATGAGAATTCGTTGCAGATGCTTGGGATGCATGGGACTGTTTATGCTAATTATGCGGTTGATAAGAGTGATCTTTTGCTTGCGTTTGGGGTTAGGTTTGATGATCGGGTTACTGGGAAGCTTGAGGCTTTTGCGAGCCGGGCGAAGATTGTTCATATTGATATTGATGCTGCTGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTTTGTGGGGATTTGAAGTTGGCTTTGAAGGGGATCAATCGAATTTTGGAGAGTAATGGGATAGAGAGTAAGCTTGATTTCGGAGGTTGGAGAGAAGAACTGAATGATCAGAAAGTTAGGTTTCCGATGAGTTATAAGAAGTTTGATGAAGCTATTCCTCCGCAGTATGCTATACAGGTTCTTGACGAGCTTACCAATGGGGAGGCTATCATAAGTACTGGTGTTGGACAACATCAGATGTGGGCTGCTCAGTTTTATAGGTACAAGAGACCGAGGCAGTGGTTGACTTCTGCTGGTCTTGGCGCTATGGGATTTGGATTGCCGGCTGCCATGGGAGCTGCTGTTGCCAATCCCGACGCTATTGTGGTTGACATCGATGGTGATGGAAGCTTTATGATGAATGTTCAGGAGTTGGCTACTATCAAGGTGGAGAATCTCCCTGTTAAGATATTGTTGTTGAACAATCAACACTTGGGTATGGTTGTCCAGTGGGAGGATCGGTTCTATAAAGCCAATAGAGCTCACACCTACCTGGGAGACCCAGCCAATGAGAAAGAAATATTCCCCAATATGTTGAAGTTTGCAGGTGCTTGTGGTATACCGGCAGCTCGTGTGACAAAGAGGGCAGACCTTAGAGCAGCGATTCAGAAAATGTTAGATACCCCTGGCCCCTACCTTCTTGATGTCATTGTACCGCATCAAGAGCATGTGTTGCCAATGATTCCTGCAAATGGATCCTTTGAGGATGTCATAACCGAGGGTGATGGCAGGATAAGTTACTGA
Protein sequence

>MS.gene01402.t1

MAATAAKTAFTTTISSSSPQSLPNQNHVFRITYPFSTSPNTPFKLNHRSLKISASISNPTQKTTPIPPPEQFISRFAPNEPRKGADILVEALERQGVTNVFAYPGGASMEIHQALTRSTAIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLADAMLDSVPLIAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVNEAFLLASSGRPGPVLIDIPKDIQQQVSVPNWDQPIRLTGYMNRLPKAPKEAHLEQIVRLLLESKKPVLYVGGGSLNCSKELRRFVELTGVPVASTLMGLGSYPSSDENSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDAAEIGKNKQPHVSVCGDLKLALKGINRILESNGIESKLDFGGWREELNDQKVRFPMSYKKFDEAIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYRYKRPRQWLTSAGLGAMGFGLPAAMGAAVANPDAIVVDIDGDGSFMMNVQELATIKVENLPVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGDPANEKEIFPNMLKFAGACGIPAARVTKRADLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPANGSFEDVITEGDGRISY