Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015518.t1 | XP_003611166.2 | 95.4 | 545 | 25 | 0 | 1 | 545 | 1 | 545 | 1.50E-304 | 1054.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015518.t1 | Q9S746 | 56.0 | 529 | 226 | 3 | 13 | 538 | 63 | 587 | 8.6e-168 | 591.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015518.t1 | G7KER7 | 95.4 | 545 | 25 | 0 | 1 | 545 | 1 | 545 | 1.1e-304 | 1054.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81615 | MS.gene015518 | PPI |
| MS.gene016743 | MS.gene015518 | PPI |
| MS.gene070492 | MS.gene015518 | PPI |
| MS.gene057883 | MS.gene015518 | PPI |
| MS.gene016742 | MS.gene015518 | PPI |
| MS.gene070510 | MS.gene015518 | PPI |
| MS.gene015518 | MS.gene67840 | PPI |
| MS.gene81622 | MS.gene015518 | PPI |
| MS.gene015518 | MS.gene81617 | PPI |
| MS.gene37911 | MS.gene015518 | PPI |
| MS.gene015518 | MS.gene070503 | PPI |
| MS.gene81620 | MS.gene015518 | PPI |
| MS.gene070505 | MS.gene015518 | PPI |
| MS.gene057886 | MS.gene015518 | PPI |
| MS.gene070509 | MS.gene015518 | PPI |
| MS.gene015518 | MS.gene016758 | PPI |
| MS.gene015518 | MS.gene070511 | PPI |
| MS.gene070507 | MS.gene015518 | PPI |
| MS.gene015518 | MS.gene057884 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015518.t1 | MTR_5g011020 | 95.413 | 545 | 25 | 0 | 1 | 545 | 1 | 545 | 0.0 | 1080 |
| MS.gene015518.t1 | MTR_5g011010 | 88.235 | 544 | 64 | 0 | 1 | 544 | 36 | 579 | 0.0 | 1001 |
| MS.gene015518.t1 | MTR_1g101770 | 59.781 | 547 | 206 | 5 | 1 | 540 | 34 | 573 | 0.0 | 657 |
| MS.gene015518.t1 | MTR_2g100070 | 56.121 | 531 | 226 | 3 | 13 | 540 | 63 | 589 | 0.0 | 615 |
| MS.gene015518.t1 | MTR_8g016320 | 57.250 | 531 | 220 | 3 | 13 | 540 | 55 | 581 | 0.0 | 610 |
| MS.gene015518.t1 | MTR_4g005860 | 45.818 | 550 | 254 | 8 | 1 | 538 | 42 | 559 | 2.01e-157 | 461 |
| MS.gene015518.t1 | MTR_1g101760 | 51.899 | 474 | 152 | 8 | 1 | 448 | 34 | 457 | 5.97e-147 | 431 |
| MS.gene015518.t1 | MTR_5g041340 | 42.701 | 548 | 232 | 11 | 13 | 543 | 54 | 536 | 2.84e-138 | 411 |
| MS.gene015518.t1 | MTR_5g024110 | 58.929 | 56 | 23 | 0 | 149 | 204 | 23 | 78 | 6.43e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015518.t1 | AT1G12570 | 63.291 | 553 | 172 | 7 | 1 | 539 | 34 | 569 | 0.0 | 707 |
| MS.gene015518.t1 | AT5G51950 | 59.375 | 544 | 212 | 5 | 1 | 538 | 34 | 574 | 0.0 | 646 |
| MS.gene015518.t1 | AT5G51950 | 59.375 | 544 | 212 | 5 | 1 | 538 | 1 | 541 | 0.0 | 646 |
| MS.gene015518.t1 | AT5G51950 | 59.124 | 548 | 209 | 6 | 1 | 538 | 34 | 576 | 0.0 | 646 |
| MS.gene015518.t1 | AT3G56060 | 58.456 | 544 | 214 | 6 | 1 | 540 | 34 | 569 | 0.0 | 641 |
| MS.gene015518.t1 | AT1G72970 | 55.827 | 532 | 228 | 3 | 11 | 539 | 61 | 588 | 0.0 | 607 |
| MS.gene015518.t1 | AT5G51930 | 55.311 | 546 | 232 | 3 | 1 | 543 | 14 | 550 | 0.0 | 601 |
| MS.gene015518.t1 | AT5G51930 | 55.367 | 531 | 225 | 3 | 1 | 528 | 61 | 582 | 0.0 | 585 |
| MS.gene015518.t1 | AT1G72970 | 54.614 | 531 | 209 | 3 | 11 | 539 | 61 | 561 | 0.0 | 578 |
| MS.gene015518.t1 | AT1G73050 | 48.624 | 545 | 237 | 8 | 1 | 538 | 42 | 550 | 1.31e-167 | 487 |
| MS.gene015518.t1 | AT1G14190 | 43.173 | 542 | 230 | 10 | 13 | 544 | 16 | 489 | 6.36e-137 | 406 |
| MS.gene015518.t1 | AT1G14190 | 43.173 | 542 | 230 | 10 | 13 | 544 | 37 | 510 | 9.58e-137 | 407 |
| MS.gene015518.t1 | AT1G14185 | 44.340 | 530 | 226 | 10 | 13 | 537 | 37 | 502 | 7.50e-136 | 404 |
Find 154 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCAAAACCCTATGATTT+TGG | 0.120797 | 5.4:-5616997 | None:intergenic |
| GCTTGGACCAAGAAGCTTTC+AGG | 0.175664 | 5.4:+5620143 | MS.gene015518:CDS |
| TAATTTGGTGTGCAGGTATA+TGG | 0.191827 | 5.4:+5620780 | MS.gene015518:intron |
| CACAAATACTTCAATGTCTT+TGG | 0.202029 | 5.4:+5620429 | MS.gene015518:CDS |
| TTCTATGATTACATCATAAT+TGG | 0.207760 | 5.4:+5616935 | MS.gene015518:CDS |
| TCCAAATGACCCGTTGAAAT+TGG | 0.223565 | 5.4:-5620196 | None:intergenic |
| GCACTTAAATTTGTTATGTT+TGG | 0.228637 | 5.4:-5617049 | None:intergenic |
| GACATGTTTGTGTATTTAAA+TGG | 0.229277 | 5.4:-5620349 | None:intergenic |
| TGGAGAGAGTGGTGGCATTT+TGG | 0.237390 | 5.4:+5618068 | MS.gene015518:CDS |
| ACACACTGCTGCTGATCTTT+TGG | 0.240891 | 5.4:+5618228 | MS.gene015518:CDS |
| TAGTGAAGGAATCATATAAA+TGG | 0.250727 | 5.4:+5618044 | MS.gene015518:CDS |
| GCCAATTTCAACGGGTCATT+TGG | 0.251169 | 5.4:+5620195 | MS.gene015518:CDS |
| AGCAGTTAGGGATGGATTAT+TGG | 0.263227 | 5.4:+5618114 | MS.gene015518:CDS |
| CAGTGTGTCTTTGACCATTT+TGG | 0.276171 | 5.4:-5618213 | None:intergenic |
| CACTTAAATTTGTTATGTTT+GGG | 0.284684 | 5.4:-5617048 | None:intergenic |
| ATCCACCCCTGAAAGCTTCT+TGG | 0.312971 | 5.4:-5620150 | None:intergenic |
| GTTACCAAAGGGTTCTCATT+TGG | 0.324244 | 5.4:-5620235 | None:intergenic |
| CAACACTATCCCAAAATCAT+AGG | 0.325480 | 5.4:+5616987 | MS.gene015518:CDS |
| GGTACAATCTTTGACCAAAA+TGG | 0.327169 | 5.4:+5618199 | MS.gene015518:CDS |
| ATCCCAAAATCATAGGGTTT+TGG | 0.327308 | 5.4:+5616994 | MS.gene015518:CDS |
| GGTTGTTGATAATGATTATA+AGG | 0.328782 | 5.4:+5620516 | MS.gene015518:CDS |
| TCTGGGGTCCTTTGCTTTGG+TGG | 0.336604 | 5.4:-5620088 | None:intergenic |
| AACTCAAGGGCTCGTGTTCT+AGG | 0.338703 | 5.4:+5617145 | MS.gene015518:CDS |
| ATGCATCTTTCTAAGTCTCT+TGG | 0.342163 | 5.4:-5620277 | None:intergenic |
| CTTCTGATGTTGAGTGGAAT+TGG | 0.347818 | 5.4:+5619363 | MS.gene015518:CDS |
| TCTCATTTGGATCGGTGTTT+CGG | 0.351009 | 5.4:-5620222 | None:intergenic |
| GCTTCTGGGGTCCTTTGCTT+TGG | 0.357996 | 5.4:-5620091 | None:intergenic |
| TTTCTAAGTCTCTTGGGTCT+TGG | 0.359107 | 5.4:-5620270 | None:intergenic |
| TTTACTTATGATCATATTCA+TGG | 0.362174 | 5.4:+5618163 | MS.gene015518:CDS |
| GTTTCCCTCATTTCTGTTGT+TGG | 0.362758 | 5.4:+5619507 | MS.gene015518:CDS |
| GTGGCTTGAGGATTTGTTCC+AGG | 0.371531 | 5.4:-5620592 | None:intergenic |
| ATAACAAATTTAAGTGCCTT+TGG | 0.375662 | 5.4:+5617055 | MS.gene015518:CDS |
| GTGTTACATCAACCATTTGT+AGG | 0.376668 | 5.4:+5619423 | MS.gene015518:CDS |
| ATTGAAGTATTTGTGTGTTT+AGG | 0.379914 | 5.4:-5620421 | None:intergenic |
| GATAATGATTATAAGGTTCT+TGG | 0.380549 | 5.4:+5620523 | MS.gene015518:CDS |
| TGTTCCAGGAGAATGATTAA+AGG | 0.385718 | 5.4:-5620578 | None:intergenic |
| TGGCACTGCAGGGTGTCCTT+TGG | 0.392070 | 5.4:+5616961 | MS.gene015518:CDS |
| TTGGAGCAGCACATCACCTT+AGG | 0.392870 | 5.4:+5619382 | MS.gene015518:CDS |
| ATTTATGTTGTTAGTGAAGC+TGG | 0.394417 | 5.4:+5618007 | MS.gene015518:intron |
| AATACAACTCCATGTGCAAT+TGG | 0.394429 | 5.4:-5619246 | None:intergenic |
| TGCATCTTTCTAAGTCTCTT+GGG | 0.395588 | 5.4:-5620276 | None:intergenic |
| TGTTGTTAGTGAAGCTGGTT+GGG | 0.396158 | 5.4:+5618012 | MS.gene015518:intron |
| GAACGTGGTGGATCACCTTA+TGG | 0.396955 | 5.4:+5617022 | MS.gene015518:CDS |
| CATACTTGAAACAAGGGATT+AGG | 0.405305 | 5.4:+5619298 | MS.gene015518:CDS |
| CAACGATTCATTTCTGAAGA+TGG | 0.409151 | 5.4:+5617115 | MS.gene015518:CDS |
| GTCAATGGCAATCAGCAGTT+AGG | 0.420528 | 5.4:+5618101 | MS.gene015518:CDS |
| GGGACATAAACAGAGTTCAT+TGG | 0.423569 | 5.4:-5619465 | None:intergenic |
| AGTGAAGGAATCATATAAAT+GGG | 0.428159 | 5.4:+5618045 | MS.gene015518:CDS |
| TTTATTTATACAATATTAAG+TGG | 0.433479 | 5.4:-5620842 | None:intergenic |
| AATTATGATGTAATCATAGA+AGG | 0.433575 | 5.4:-5616933 | None:intergenic |
| ATGGTGGTTGTCAAGTTGGT+AGG | 0.436196 | 5.4:+5620494 | MS.gene015518:CDS |
| AATTTGGTGTGCAGGTATAT+GGG | 0.437345 | 5.4:+5620781 | MS.gene015518:intron |
| TTTGGCCTCCTATGCGTCAA+TGG | 0.438093 | 5.4:+5618086 | MS.gene015518:CDS |
| ATCTTGGGGCCAATTTCAAC+GGG | 0.441009 | 5.4:+5620187 | MS.gene015518:CDS |
| ATAATTGGTGGTGGCACTGC+AGG | 0.447684 | 5.4:+5616950 | MS.gene015518:CDS |
| CAAGCCACTGTTATGATGCT+TGG | 0.447887 | 5.4:+5620607 | MS.gene015518:CDS |
| GGACATAAACAGAGTTCATT+GGG | 0.454116 | 5.4:-5619464 | None:intergenic |
| GAGACACTGTGATGACTATA+TGG | 0.455474 | 5.4:+5620464 | MS.gene015518:CDS |
| TGATCATATTCATGGGACTA+AGG | 0.458885 | 5.4:+5618171 | MS.gene015518:CDS |
| GACATTCCTTGTCCTACAAA+TGG | 0.458901 | 5.4:-5619435 | None:intergenic |
| TCTACCTTTAATCATTCTCC+TGG | 0.466597 | 5.4:+5620574 | MS.gene015518:CDS |
| CCCATCTCCTTCCCCGGTAG+AGG | 0.467548 | 5.4:+5619485 | MS.gene015518:CDS |
| CATATTCATGGGACTAAGGT+TGG | 0.468307 | 5.4:+5618175 | MS.gene015518:CDS |
| CTTGGACCAAGAAGCTTTCA+GGG | 0.472516 | 5.4:+5620144 | MS.gene015518:CDS |
| TATCATGGTGGTTGTCAAGT+TGG | 0.477768 | 5.4:+5620490 | MS.gene015518:CDS |
| AATAGAGAGGATGGAGAGCT+TGG | 0.480322 | 5.4:+5620126 | MS.gene015518:CDS |
| AATCTTGGGGCCAATTTCAA+CGG | 0.483426 | 5.4:+5620186 | MS.gene015518:CDS |
| ACCTCTACCGGGGAAGGAGA+TGG | 0.487897 | 5.4:-5619486 | None:intergenic |
| GGTGGAAGTTGTTTGAATGC+TGG | 0.490886 | 5.4:+5617169 | MS.gene015518:CDS |
| AGGGCTCGTGTTCTAGGTGG+TGG | 0.492143 | 5.4:+5617151 | MS.gene015518:CDS |
| AGGGATGGATTATTGGAAGT+AGG | 0.496850 | 5.4:+5618121 | MS.gene015518:CDS |
| AGCAAAAGCAATAGAGAGGA+TGG | 0.501564 | 5.4:+5620117 | MS.gene015518:CDS |
| TGCACATGGAGTTGTATTCA+AGG | 0.503695 | 5.4:+5619251 | MS.gene015518:CDS |
| TATGATTACATCATAATTGG+TGG | 0.504417 | 5.4:+5616938 | MS.gene015518:CDS |
| GTTGTTGGCATTACCAACTT+TGG | 0.507784 | 5.4:+5619522 | MS.gene015518:CDS |
| TCATAAGTAAAGCCATTGTC+AGG | 0.509178 | 5.4:-5618151 | None:intergenic |
| GTTATGTTTGGGTTGCCATA+AGG | 0.509944 | 5.4:-5617037 | None:intergenic |
| GACCAAGAAGCTTTCAGGGG+TGG | 0.515957 | 5.4:+5620148 | MS.gene015518:CDS |
| ATATAAATGGGTGGAGAGAG+TGG | 0.516063 | 5.4:+5618057 | MS.gene015518:CDS |
| AGTAGTTAAATGTTACCAAA+GGG | 0.518064 | 5.4:-5620246 | None:intergenic |
| TCAGAAATGAATCGTTGAGC+AGG | 0.522804 | 5.4:-5617109 | None:intergenic |
| CCACTCAACATCAGAAGTTG+TGG | 0.523098 | 5.4:-5619357 | None:intergenic |
| TTATGTCCCATCTCCTTCCC+CGG | 0.526287 | 5.4:+5619479 | MS.gene015518:CDS |
| TTCAATGTAGCTGCCAAAGT+TGG | 0.526382 | 5.4:-5619535 | None:intergenic |
| CGATCCAAATGAGAACCCTT+TGG | 0.526890 | 5.4:+5620231 | MS.gene015518:CDS |
| TCAATGGCAATCAGCAGTTA+GGG | 0.526951 | 5.4:+5618102 | MS.gene015518:CDS |
| CAAAGTTGCCACCAAAGCAA+AGG | 0.531704 | 5.4:+5620080 | MS.gene015518:CDS |
| TGTAAACAAGATTCTATGAA+CGG | 0.532945 | 5.4:-5618293 | None:intergenic |
| CACTCAACATCAGAAGTTGT+GGG | 0.533196 | 5.4:-5619356 | None:intergenic |
| CATAGGGCATACTTGAAACA+AGG | 0.533526 | 5.4:+5619291 | MS.gene015518:CDS |
| CAAAGGGTTCTCATTTGGAT+CGG | 0.534900 | 5.4:-5620230 | None:intergenic |
| GCTAGCGGCACAACCTTCAC+AGG | 0.536422 | 5.4:+5619561 | MS.gene015518:CDS |
| CCTCTACCGGGGAAGGAGAT+GGG | 0.536487 | 5.4:-5619485 | None:intergenic |
| TTACTTATGATCATATTCAT+GGG | 0.537167 | 5.4:+5618164 | MS.gene015518:CDS |
| AATCGTTGAGCAGGAGAGGA+AGG | 0.537483 | 5.4:-5617100 | None:intergenic |
| TGCACGAGGGACAGAACATA+GGG | 0.539350 | 5.4:+5619275 | MS.gene015518:CDS |
| ATAGTATCCGCTGGTGCACT+AGG | 0.543415 | 5.4:+5619330 | MS.gene015518:CDS |
| GAAATGAGGGAAACCTCTAC+CGG | 0.544183 | 5.4:-5619498 | None:intergenic |
| TAATCATAGAAGGATATGAT+TGG | 0.545325 | 5.4:-5616923 | None:intergenic |
| TGGAGCAGCACATCACCTTA+GGG | 0.545444 | 5.4:+5619383 | MS.gene015518:CDS |
| AGGGAAACCTCTACCGGGGA+AGG | 0.546280 | 5.4:-5619492 | None:intergenic |
| GACTTAGAAAGATGCATACA+AGG | 0.549132 | 5.4:+5620283 | MS.gene015518:CDS |
| AGCTACATTGAAGCCGCTAG+CGG | 0.549192 | 5.4:+5619546 | MS.gene015518:CDS |
| AATGAATCGTTGAGCAGGAG+AGG | 0.550548 | 5.4:-5617104 | None:intergenic |
| TGGGATAGTGTTGCAGCCAA+AGG | 0.551223 | 5.4:-5616977 | None:intergenic |
| AAGATGGTGTTATCAACTCA+AGG | 0.552508 | 5.4:+5617131 | MS.gene015518:CDS |
| ACAGGTTCTCAAAGAGACTT+CGG | 0.553744 | 5.4:+5619579 | MS.gene015518:CDS |
| CATCAACCATTTGTAGGACA+AGG | 0.554122 | 5.4:+5619429 | MS.gene015518:CDS |
| AAGTAGTTAAATGTTACCAA+AGG | 0.554482 | 5.4:-5620247 | None:intergenic |
| TGGTGGTTGTCAAGTTGGTA+GGG | 0.555852 | 5.4:+5620495 | MS.gene015518:CDS |
| ATGCACGAGGGACAGAACAT+AGG | 0.556360 | 5.4:+5619274 | MS.gene015518:CDS |
| CGTCGATTACGCGCAATGCA+TGG | 0.559170 | 5.4:-5620549 | None:intergenic |
| TGTTTAGGCAATAAATTCAC+TGG | 0.560377 | 5.4:-5620406 | None:intergenic |
| ATTTCAAAGCCAATTGCACA+TGG | 0.562613 | 5.4:+5619237 | MS.gene015518:CDS |
| AACACTATCCCAAAATCATA+GGG | 0.567424 | 5.4:+5616988 | MS.gene015518:CDS |
| GCTGATTGCCATTGACGCAT+AGG | 0.567844 | 5.4:-5618094 | None:intergenic |
| CATGCATTGCGCGTAATCGA+CGG | 0.568080 | 5.4:+5620550 | MS.gene015518:CDS |
| GATTACATCATAATTGGTGG+TGG | 0.578599 | 5.4:+5616941 | MS.gene015518:CDS |
| CCACTGTTATGATGCTTGGA+AGG | 0.582795 | 5.4:+5620611 | MS.gene015518:CDS |
| TAATGCCAACAACAGAAATG+AGG | 0.587387 | 5.4:-5619512 | None:intergenic |
| CACTGATGTTGTGTTCCCTA+AGG | 0.592785 | 5.4:-5619398 | None:intergenic |
| GATTGCCATTGACGCATAGG+AGG | 0.594586 | 5.4:-5618091 | None:intergenic |
| AATGAGATCATAGTATCCGC+TGG | 0.596422 | 5.4:+5619321 | MS.gene015518:CDS |
| GTCTCTTTGAGAACCTGTGA+AGG | 0.597401 | 5.4:-5619574 | None:intergenic |
| GTTACGTACCTTACGTAGCG+AGG | 0.600055 | 5.4:-5617211 | None:intergenic |
| AATGCCAACAACAGAAATGA+GGG | 0.604668 | 5.4:-5619511 | None:intergenic |
| AAATGAGGGAAACCTCTACC+GGG | 0.605560 | 5.4:-5619497 | None:intergenic |
| TGGCAATCAGCAGTTAGGGA+TGG | 0.606730 | 5.4:+5618106 | MS.gene015518:CDS |
| ATGTTGTTAGTGAAGCTGGT+TGG | 0.608199 | 5.4:+5618011 | MS.gene015518:intron |
| ATTCATGGGACTAAGGTTGG+AGG | 0.610715 | 5.4:+5618178 | MS.gene015518:CDS |
| ATGACTATATGGCATTATCA+TGG | 0.611532 | 5.4:+5620475 | MS.gene015518:CDS |
| GTGCAAGCCCTCGCTACGTA+AGG | 0.617018 | 5.4:+5617203 | MS.gene015518:CDS |
| GAAGGAATCATATAAATGGG+TGG | 0.624947 | 5.4:+5618048 | MS.gene015518:CDS |
| ATCAGAAAGTGCAACACCAA+AGG | 0.626216 | 5.4:-5617071 | None:intergenic |
| GTAGGTGTATTGCCTGACAA+TGG | 0.628176 | 5.4:+5618139 | MS.gene015518:CDS |
| TGTGAAGGTTGTGCCGCTAG+CGG | 0.634172 | 5.4:-5619559 | None:intergenic |
| CCATAGCAAAAGCAATAGAG+AGG | 0.634747 | 5.4:+5620113 | MS.gene015518:CDS |
| AGCATCATAACAGTGGCTTG+AGG | 0.640568 | 5.4:-5620604 | None:intergenic |
| TAATTGGTGGTGGCACTGCA+GGG | 0.643965 | 5.4:+5616951 | MS.gene015518:CDS |
| CCTTCCAAGCATCATAACAG+TGG | 0.644107 | 5.4:-5620611 | None:intergenic |
| TGGGCTACCTAGTGCACCAG+CGG | 0.650652 | 5.4:-5619337 | None:intergenic |
| CCACAACTTCTGATGTTGAG+TGG | 0.651050 | 5.4:+5619357 | MS.gene015518:CDS |
| TTACGTACCTTACGTAGCGA+GGG | 0.652683 | 5.4:-5617210 | None:intergenic |
| CAAAAGAAGAGTAATTGTGT+TGG | 0.656681 | 5.4:-5618263 | None:intergenic |
| TCAAGGGCTCGTGTTCTAGG+TGG | 0.662204 | 5.4:+5617148 | MS.gene015518:CDS |
| AGATGGTGTTATCAACTCAA+GGG | 0.664790 | 5.4:+5617132 | MS.gene015518:CDS |
| ATAGGGCATACTTGAAACAA+GGG | 0.676597 | 5.4:+5619292 | MS.gene015518:CDS |
| GTTGTATTCAAGGATGCACG+AGG | 0.682935 | 5.4:+5619261 | MS.gene015518:CDS |
| TTGGACCAAGAAGCTTTCAG+GGG | 0.685396 | 5.4:+5620145 | MS.gene015518:CDS |
| AATGAGGGAAACCTCTACCG+GGG | 0.712968 | 5.4:-5619496 | None:intergenic |
| AAACAAGATTCTATGAACGG+TGG | 0.714085 | 5.4:-5618290 | None:intergenic |
| ACTATATGGCATTATCATGG+TGG | 0.730214 | 5.4:+5620478 | MS.gene015518:CDS |
| TAAATGGGTGGAGAGAGTGG+TGG | 0.737306 | 5.4:+5618060 | MS.gene015518:CDS |
| TTGTATTCAAGGATGCACGA+GGG | 0.759277 | 5.4:+5619262 | MS.gene015518:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATACATTATTAAATAGA+TGG | - | chr5.4:5618655-5618674 | None:intergenic | 10.0% |
| !!! | GTTGAATTTTTTTATTAATT+TGG | + | chr5.4:5620765-5620784 | MS.gene015518:intron | 10.0% |
| !!! | TTATTGGTTAAAATTAATAT+AGG | - | chr5.4:5617664-5617683 | None:intergenic | 10.0% |
| !! | ACATTGAATTATATATATAG+TGG | + | chr5.4:5618827-5618846 | MS.gene015518:intron | 15.0% |
| !! | TCAAAACCAAATAAATAATA+TGG | + | chr5.4:5619726-5619745 | MS.gene015518:intron | 15.0% |
| !!! | AAAAAAAGTTACAAAGTTTT+AGG | - | chr5.4:5617460-5617479 | None:intergenic | 15.0% |
| !!! | AATATTGTTATTTGTTAGTT+AGG | - | chr5.4:5619762-5619781 | None:intergenic | 15.0% |
| !!! | ATTATGTAGAATTTTAATGT+TGG | - | chr5.4:5617855-5617874 | None:intergenic | 15.0% |
| !!! | ATTTAGCACTATAATTTTAA+AGG | - | chr5.4:5619009-5619028 | None:intergenic | 15.0% |
| !!! | TAATATTTATTTTGTTGTCT+CGG | + | chr5.4:5619158-5619177 | MS.gene015518:intron | 15.0% |
| !! | AAAAATATCACGATTGAATA+AGG | - | chr5.4:5619877-5619896 | None:intergenic | 20.0% |
| !! | AAAATTCAAATTTCAAACTC+CGG | - | chr5.4:5618853-5618872 | None:intergenic | 20.0% |
| !! | AATTATGATGTAATCATAGA+AGG | - | chr5.4:5616936-5616955 | None:intergenic | 20.0% |
| !! | ACATTGTGAAGTATATTTAT+TGG | - | chr5.4:5618745-5618764 | None:intergenic | 20.0% |
| !! | ACCAAATAAATAATATGGTA+TGG | + | chr5.4:5619731-5619750 | MS.gene015518:intron | 20.0% |
| !! | ACCAATAAAAAAGTAAATGT+TGG | + | chr5.4:5617676-5617695 | MS.gene015518:intron | 20.0% |
| !! | AGCAATTTAAACAAAGATAA+AGG | - | chr5.4:5620712-5620731 | None:intergenic | 20.0% |
| !! | ATGTACAATATCATTTGTAT+GGG | + | chr5.4:5617387-5617406 | MS.gene015518:intron | 20.0% |
| !! | ATTTATCTTGATATAACAAG+AGG | - | chr5.4:5618980-5618999 | None:intergenic | 20.0% |
| !! | TAGGTATAAATCATTAGATT+TGG | - | chr5.4:5617294-5617313 | None:intergenic | 20.0% |
| !! | TATGTACAATATCATTTGTA+TGG | + | chr5.4:5617386-5617405 | MS.gene015518:intron | 20.0% |
| !! | TTACTATCAACTTTATATGT+AGG | - | chr5.4:5617313-5617332 | None:intergenic | 20.0% |
| !! | TTACTTATGATCATATTCAT+GGG | + | chr5.4:5618164-5618183 | MS.gene015518:CDS | 20.0% |
| !! | TTCTATGATTACATCATAAT+TGG | + | chr5.4:5616935-5616954 | MS.gene015518:CDS | 20.0% |
| !! | TTTACTTATGATCATATTCA+TGG | + | chr5.4:5618163-5618182 | MS.gene015518:CDS | 20.0% |
| !!! | ATAAAGTTGATAGTAAGTTT+TGG | + | chr5.4:5617317-5617336 | MS.gene015518:intron | 20.0% |
| !!! | ATTCATTCTAGAAAAAATCT+TGG | + | chr5.4:5620171-5620190 | MS.gene015518:CDS | 20.0% |
| !!! | CACTTAAATTTGTTATGTTT+GGG | - | chr5.4:5617051-5617070 | None:intergenic | 20.0% |
| !!! | CATTTTTATAGAGAAATTCA+TGG | + | chr5.4:5617486-5617505 | MS.gene015518:intron | 20.0% |
| !!! | GTCTTTAAAAAGTAATTCAT+AGG | - | chr5.4:5619685-5619704 | None:intergenic | 20.0% |
| !!! | TAAATTGCTATTTCACAAAT+TGG | + | chr5.4:5619073-5619092 | MS.gene015518:intron | 20.0% |
| !!! | TATTTTTTAGTTCACTTTGA+TGG | + | chr5.4:5618718-5618737 | MS.gene015518:intron | 20.0% |
| !!! | TCAATCGTGATATTTTTTAT+TGG | + | chr5.4:5619880-5619899 | MS.gene015518:intron | 20.0% |
| !!! | TCCAACATTTACTTTTTTAT+TGG | - | chr5.4:5617680-5617699 | None:intergenic | 20.0% |
| !!! | TTCATTCTAGAAAAAATCTT+GGG | + | chr5.4:5620172-5620191 | MS.gene015518:CDS | 20.0% |
| ! | AAGTAGTTAAATGTTACCAA+AGG | - | chr5.4:5620250-5620269 | None:intergenic | 25.0% |
| ! | AATAAACTATTCTCTCAAGA+TGG | + | chr5.4:5617239-5617258 | MS.gene015518:intron | 25.0% |
| ! | ACCACTAAATATAATTCACA+AGG | - | chr5.4:5618608-5618627 | None:intergenic | 25.0% |
| ! | ACCTTGTGAATTATATTTAG+TGG | + | chr5.4:5618604-5618623 | MS.gene015518:intron | 25.0% |
| ! | AGTAGTTAAATGTTACCAAA+GGG | - | chr5.4:5620249-5620268 | None:intergenic | 25.0% |
| ! | AGTGAAGGAATCATATAAAT+GGG | + | chr5.4:5618045-5618064 | MS.gene015518:CDS | 25.0% |
| ! | ATAACAAATTTAAGTGCCTT+TGG | + | chr5.4:5617055-5617074 | MS.gene015518:CDS | 25.0% |
| ! | CAAATATTACAAATGCAGAT+TGG | + | chr5.4:5620049-5620068 | MS.gene015518:intron | 25.0% |
| ! | GACATGTTTGTGTATTTAAA+TGG | - | chr5.4:5620352-5620371 | None:intergenic | 25.0% |
| ! | GATAATGATTATAAGGTTCT+TGG | + | chr5.4:5620523-5620542 | MS.gene015518:CDS | 25.0% |
| ! | GCCATACCATATTATTTATT+TGG | - | chr5.4:5619735-5619754 | None:intergenic | 25.0% |
| ! | TAATCATAGAAGGATATGAT+TGG | - | chr5.4:5616926-5616945 | None:intergenic | 25.0% |
| ! | TAGTGAAGGAATCATATAAA+TGG | + | chr5.4:5618044-5618063 | MS.gene015518:CDS | 25.0% |
| ! | TATCTGAAAACACAAGATAA+AGG | - | chr5.4:5620735-5620754 | None:intergenic | 25.0% |
| ! | TATGATTACATCATAATTGG+TGG | + | chr5.4:5616938-5616957 | MS.gene015518:CDS | 25.0% |
| ! | TGAATTATATATATAGTGGC+CGG | + | chr5.4:5618831-5618850 | MS.gene015518:intron | 25.0% |
| ! | TGTAAACAAGATTCTATGAA+CGG | - | chr5.4:5618296-5618315 | None:intergenic | 25.0% |
| ! | TTCACATAATCATCATTGAA+TGG | - | chr5.4:5619185-5619204 | None:intergenic | 25.0% |
| ! | TTTCGAAATTGTAAGATGTA+GGG | + | chr5.4:5618418-5618437 | MS.gene015518:intron | 25.0% |
| !! | ATCTTGTTTACAAAAAGCAA+AGG | + | chr5.4:5618304-5618323 | MS.gene015518:CDS | 25.0% |
| !! | ATTGAAGTATTTGTGTGTTT+AGG | - | chr5.4:5620424-5620443 | None:intergenic | 25.0% |
| !! | TCATTCTAGAAAAAATCTTG+GGG | + | chr5.4:5620173-5620192 | MS.gene015518:CDS | 25.0% |
| !! | TTGTGTTTTCAGATATCTTA+TGG | + | chr5.4:5620740-5620759 | MS.gene015518:intron | 25.0% |
| !! | TTTTCGAAATTGTAAGATGT+AGG | + | chr5.4:5618417-5618436 | MS.gene015518:intron | 25.0% |
| !!! | ACAAATTCTAAAATGTACCT+TGG | - | chr5.4:5619616-5619635 | None:intergenic | 25.0% |
| !!! | CAAATTCTAAAATGTACCTT+GGG | - | chr5.4:5619615-5619634 | None:intergenic | 25.0% |
| !!! | GCACTTAAATTTGTTATGTT+TGG | - | chr5.4:5617052-5617071 | None:intergenic | 25.0% |
| !!! | GGTTGTTGATAATGATTATA+AGG | + | chr5.4:5620516-5620535 | MS.gene015518:CDS | 25.0% |
| !!! | TATTTTTAAGTTCACCATGA+TGG | - | chr5.4:5618631-5618650 | None:intergenic | 25.0% |
| !!! | TTTTTATTAATTTGGTGTGC+AGG | + | chr5.4:5620773-5620792 | MS.gene015518:intron | 25.0% |
| AAAACAAGATATCTTGACGT+AGG | - | chr5.4:5618515-5618534 | None:intergenic | 30.0% | |
| AAATGAGTAAGTGCTAGAAA+AGG | - | chr5.4:5617580-5617599 | None:intergenic | 30.0% | |
| AACACTATCCCAAAATCATA+GGG | + | chr5.4:5616988-5617007 | MS.gene015518:CDS | 30.0% | |
| ATAGTGTCATGTTATGATGA+AGG | + | chr5.4:5618579-5618598 | MS.gene015518:intron | 30.0% | |
| ATGACTATATGGCATTATCA+TGG | + | chr5.4:5620475-5620494 | MS.gene015518:CDS | 30.0% | |
| ATTTATGTTGTTAGTGAAGC+TGG | + | chr5.4:5618007-5618026 | MS.gene015518:intron | 30.0% | |
| CAAAAGAAGAGTAATTGTGT+TGG | - | chr5.4:5618266-5618285 | None:intergenic | 30.0% | |
| CACAAATACTTCAATGTCTT+TGG | + | chr5.4:5620429-5620448 | MS.gene015518:CDS | 30.0% | |
| GGAAGGTAAAATATACAGTT+AGG | + | chr5.4:5620628-5620647 | MS.gene015518:intron | 30.0% | |
| TGTTTAGGCAATAAATTCAC+TGG | - | chr5.4:5620409-5620428 | None:intergenic | 30.0% | |
| TTATATTTAGTGGTCCATCA+TGG | + | chr5.4:5618614-5618633 | MS.gene015518:intron | 30.0% | |
| TTCCACTTATTCACCTTAAA+AGG | + | chr5.4:5618871-5618890 | MS.gene015518:intron | 30.0% | |
| TTGGGATGAAAAATTAGTGA+AGG | + | chr5.4:5618030-5618049 | MS.gene015518:CDS | 30.0% | |
| ! | AAATATATGAATGCCGACTA+TGG | - | chr5.4:5619981-5620000 | None:intergenic | 30.0% |
| ! | AATATATGAATGCCGACTAT+GGG | - | chr5.4:5619980-5619999 | None:intergenic | 30.0% |
| ! | ACCTTAAAAGGTACAATTCA+AGG | + | chr5.4:5618883-5618902 | MS.gene015518:intron | 30.0% |
| ! | TATAAAATCAATAAGGGTGC+CGG | + | chr5.4:5617604-5617623 | MS.gene015518:intron | 30.0% |
| !!! | TACCTTTTAAGGTGAATAAG+TGG | - | chr5.4:5618876-5618895 | None:intergenic | 30.0% |
| AAACAAGATTCTATGAACGG+TGG | - | chr5.4:5618293-5618312 | None:intergenic | 35.0% | |
| AATACAACTCCATGTGCAAT+TGG | - | chr5.4:5619249-5619268 | None:intergenic | 35.0% | |
| AATGCCAACAACAGAAATGA+GGG | - | chr5.4:5619514-5619533 | None:intergenic | 35.0% | |
| ACTATATGGCATTATCATGG+TGG | + | chr5.4:5620478-5620497 | MS.gene015518:CDS | 35.0% | |
| ATAGGGCATACTTGAAACAA+GGG | + | chr5.4:5619292-5619311 | MS.gene015518:CDS | 35.0% | |
| ATGCATCTTTCTAAGTCTCT+TGG | - | chr5.4:5620280-5620299 | None:intergenic | 35.0% | |
| ATTTCAAAGCCAATTGCACA+TGG | + | chr5.4:5619237-5619256 | MS.gene015518:CDS | 35.0% | |
| CAACACTATCCCAAAATCAT+AGG | + | chr5.4:5616987-5617006 | MS.gene015518:CDS | 35.0% | |
| CATACTTGAAACAAGGGATT+AGG | + | chr5.4:5619298-5619317 | MS.gene015518:CDS | 35.0% | |
| CATTGTGCATGATATCAAAC+AGG | + | chr5.4:5619207-5619226 | MS.gene015518:intron | 35.0% | |
| GAAGGAATCATATAAATGGG+TGG | + | chr5.4:5618048-5618067 | MS.gene015518:CDS | 35.0% | |
| GACTTAGAAAGATGCATACA+AGG | + | chr5.4:5620283-5620302 | MS.gene015518:CDS | 35.0% | |
| GATTACATCATAATTGGTGG+TGG | + | chr5.4:5616941-5616960 | MS.gene015518:CDS | 35.0% | |
| GGACATAAACAGAGTTCATT+GGG | - | chr5.4:5619467-5619486 | None:intergenic | 35.0% | |
| GGTACAATCTTTGACCAAAA+TGG | + | chr5.4:5618199-5618218 | MS.gene015518:CDS | 35.0% | |
| GTGAAGTGTAACCAAAAAAG+AGG | - | chr5.4:5618954-5618973 | None:intergenic | 35.0% | |
| GTGTTACATCAACCATTTGT+AGG | + | chr5.4:5619423-5619442 | MS.gene015518:CDS | 35.0% | |
| TAATGCCAACAACAGAAATG+AGG | - | chr5.4:5619515-5619534 | None:intergenic | 35.0% | |
| TCATAAGTAAAGCCATTGTC+AGG | - | chr5.4:5618154-5618173 | None:intergenic | 35.0% | |
| TCTACCTTTAATCATTCTCC+TGG | + | chr5.4:5620574-5620593 | MS.gene015518:CDS | 35.0% | |
| TGATCATATTCATGGGACTA+AGG | + | chr5.4:5618171-5618190 | MS.gene015518:CDS | 35.0% | |
| TGCATCTTTCTAAGTCTCTT+GGG | - | chr5.4:5620279-5620298 | None:intergenic | 35.0% | |
| TGTTCCAGGAGAATGATTAA+AGG | - | chr5.4:5620581-5620600 | None:intergenic | 35.0% | |
| ! | ATCCCAAAATCATAGGGTTT+TGG | + | chr5.4:5616994-5617013 | MS.gene015518:CDS | 35.0% |
| ! | CAACGATTCATTTCTGAAGA+TGG | + | chr5.4:5617115-5617134 | MS.gene015518:CDS | 35.0% |
| ! | CAAGGCACTAAATTACTTGA+CGG | + | chr5.4:5618901-5618920 | MS.gene015518:intron | 35.0% |
| ! | CACCAAAACCCTATGATTTT+GGG | - | chr5.4:5616999-5617018 | None:intergenic | 35.0% |
| ! | GCCTTGAATTGTACCTTTTA+AGG | - | chr5.4:5618887-5618906 | None:intergenic | 35.0% |
| !! | AAGATGGTGTTATCAACTCA+AGG | + | chr5.4:5617131-5617150 | MS.gene015518:CDS | 35.0% |
| !! | AATTTGGTGTGCAGGTATAT+GGG | + | chr5.4:5620781-5620800 | MS.gene015518:intron | 35.0% |
| !! | AGATGGTGTTATCAACTCAA+GGG | + | chr5.4:5617132-5617151 | MS.gene015518:CDS | 35.0% |
| !! | ATAAAATCAATAAGGGTGCC+GGG | + | chr5.4:5617605-5617624 | MS.gene015518:intron | 35.0% |
| !! | TAATTTGGTGTGCAGGTATA+TGG | + | chr5.4:5620780-5620799 | MS.gene015518:intron | 35.0% |
| !!! | AACTTCACTTGCCTCTTTTT+TGG | + | chr5.4:5618940-5618959 | MS.gene015518:intron | 35.0% |
| AATCTTGGGGCCAATTTCAA+CGG | + | chr5.4:5620186-5620205 | MS.gene015518:CDS | 40.0% | |
| AATGAGATCATAGTATCCGC+TGG | + | chr5.4:5619321-5619340 | MS.gene015518:CDS | 40.0% | |
| ACAGGTTCTCAAAGAGACTT+CGG | + | chr5.4:5619579-5619598 | MS.gene015518:CDS | 40.0% | |
| ACTATTCTCTCAAGATGGTC+AGG | + | chr5.4:5617244-5617263 | MS.gene015518:intron | 40.0% | |
| AGCAAAAGCAATAGAGAGGA+TGG | + | chr5.4:5620117-5620136 | MS.gene015518:CDS | 40.0% | |
| ATATAAATGGGTGGAGAGAG+TGG | + | chr5.4:5618057-5618076 | MS.gene015518:CDS | 40.0% | |
| ATGTTGTTAGTGAAGCTGGT+TGG | + | chr5.4:5618011-5618030 | MS.gene015518:intron | 40.0% | |
| CAAAGGGTTCTCATTTGGAT+CGG | - | chr5.4:5620233-5620252 | None:intergenic | 40.0% | |
| CACGGATTCTTTAATTGCAG+GGG | - | chr5.4:5619809-5619828 | None:intergenic | 40.0% | |
| CACTCAACATCAGAAGTTGT+GGG | - | chr5.4:5619359-5619378 | None:intergenic | 40.0% | |
| CATAGGGCATACTTGAAACA+AGG | + | chr5.4:5619291-5619310 | MS.gene015518:CDS | 40.0% | |
| CATATTCATGGGACTAAGGT+TGG | + | chr5.4:5618175-5618194 | MS.gene015518:CDS | 40.0% | |
| CATCAACCATTTGTAGGACA+AGG | + | chr5.4:5619429-5619448 | MS.gene015518:CDS | 40.0% | |
| CCATAGCAAAAGCAATAGAG+AGG | + | chr5.4:5620113-5620132 | MS.gene015518:CDS | 40.0% | |
| CTTCTGATGTTGAGTGGAAT+TGG | + | chr5.4:5619363-5619382 | MS.gene015518:CDS | 40.0% | |
| GACATTCCTTGTCCTACAAA+TGG | - | chr5.4:5619438-5619457 | None:intergenic | 40.0% | |
| GAGACACTGTGATGACTATA+TGG | + | chr5.4:5620464-5620483 | MS.gene015518:CDS | 40.0% | |
| GCACGGATTCTTTAATTGCA+GGG | - | chr5.4:5619810-5619829 | None:intergenic | 40.0% | |
| GGGACATAAACAGAGTTCAT+TGG | - | chr5.4:5619468-5619487 | None:intergenic | 40.0% | |
| GTTACCAAAGGGTTCTCATT+TGG | - | chr5.4:5620238-5620257 | None:intergenic | 40.0% | |
| GTTGTTGGCATTACCAACTT+TGG | + | chr5.4:5619522-5619541 | MS.gene015518:CDS | 40.0% | |
| GTTTCCCTCATTTCTGTTGT+TGG | + | chr5.4:5619507-5619526 | MS.gene015518:CDS | 40.0% | |
| TATCATGGTGGTTGTCAAGT+TGG | + | chr5.4:5620490-5620509 | MS.gene015518:CDS | 40.0% | |
| TCAATGGCAATCAGCAGTTA+GGG | + | chr5.4:5618102-5618121 | MS.gene015518:CDS | 40.0% | |
| TCAGAAATGAATCGTTGAGC+AGG | - | chr5.4:5617112-5617131 | None:intergenic | 40.0% | |
| TCCAAATGACCCGTTGAAAT+TGG | - | chr5.4:5620199-5620218 | None:intergenic | 40.0% | |
| TGAGTCACACAGAAAGTTGT+CGG | + | chr5.4:5617637-5617656 | MS.gene015518:intron | 40.0% | |
| TGCACATGGAGTTGTATTCA+AGG | + | chr5.4:5619251-5619270 | MS.gene015518:CDS | 40.0% | |
| TGCACGGATTCTTTAATTGC+AGG | - | chr5.4:5619811-5619830 | None:intergenic | 40.0% | |
| TGTGACTCATTTGTAAAGCC+CGG | - | chr5.4:5617626-5617645 | None:intergenic | 40.0% | |
| TGTGCATGATATCAAACAGG+TGG | + | chr5.4:5619210-5619229 | MS.gene015518:intron | 40.0% | |
| TGTTGTTAGTGAAGCTGGTT+GGG | + | chr5.4:5618012-5618031 | MS.gene015518:intron | 40.0% | |
| TTCAATGTAGCTGCCAAAGT+TGG | - | chr5.4:5619538-5619557 | None:intergenic | 40.0% | |
| TTCTTTAATTGCAGGGGAGT+CGG | - | chr5.4:5619803-5619822 | None:intergenic | 40.0% | |
| TTGTATTCAAGGATGCACGA+GGG | + | chr5.4:5619262-5619281 | MS.gene015518:CDS | 40.0% | |
| TTTCTAAGTCTCTTGGGTCT+TGG | - | chr5.4:5620273-5620292 | None:intergenic | 40.0% | |
| ! | ATCAGAAAGTGCAACACCAA+AGG | - | chr5.4:5617074-5617093 | None:intergenic | 40.0% |
| ! | CAGTGTGTCTTTGACCATTT+TGG | - | chr5.4:5618216-5618235 | None:intergenic | 40.0% |
| ! | GAGTATCGCAATCTTTGAGT+TGG | - | chr5.4:5617904-5617923 | None:intergenic | 40.0% |
| ! | GCACCAAAACCCTATGATTT+TGG | - | chr5.4:5617000-5617019 | None:intergenic | 40.0% |
| ! | TCTCATTTGGATCGGTGTTT+CGG | - | chr5.4:5620225-5620244 | None:intergenic | 40.0% |
| !! | AGCAGTTAGGGATGGATTAT+TGG | + | chr5.4:5618114-5618133 | MS.gene015518:CDS | 40.0% |
| !! | AGGGATGGATTATTGGAAGT+AGG | + | chr5.4:5618121-5618140 | MS.gene015518:CDS | 40.0% |
| !! | ATTGCTTTTGCTATGGCTTC+TGG | - | chr5.4:5620109-5620128 | None:intergenic | 40.0% |
| !! | CCTCTCTATTGCTTTTGCTA+TGG | - | chr5.4:5620116-5620135 | None:intergenic | 40.0% |
| !! | GTTATGTTTGGGTTGCCATA+AGG | - | chr5.4:5617040-5617059 | None:intergenic | 40.0% |
| !! | TCGCAATCTTTGAGTTGGAT+AGG | - | chr5.4:5617899-5617918 | None:intergenic | 40.0% |
| !! | TTGCTTTTGCTATGGCTTCT+GGG | - | chr5.4:5620108-5620127 | None:intergenic | 40.0% |
| AAATGAGGGAAACCTCTACC+GGG | - | chr5.4:5619500-5619519 | None:intergenic | 45.0% | |
| AATAGAGAGGATGGAGAGCT+TGG | + | chr5.4:5620126-5620145 | MS.gene015518:CDS | 45.0% | |
| AATGAATCGTTGAGCAGGAG+AGG | - | chr5.4:5617107-5617126 | None:intergenic | 45.0% | |
| AGCATCATAACAGTGGCTTG+AGG | - | chr5.4:5620607-5620626 | None:intergenic | 45.0% | |
| ATCTTGGGGCCAATTTCAAC+GGG | + | chr5.4:5620187-5620206 | MS.gene015518:CDS | 45.0% | |
| ATGTTTCCGCCAACTAAGCA+CGG | - | chr5.4:5618811-5618830 | None:intergenic | 45.0% | |
| ATTCATGGGACTAAGGTTGG+AGG | + | chr5.4:5618178-5618197 | MS.gene015518:CDS | 45.0% | |
| CAAAGTTGCCACCAAAGCAA+AGG | + | chr5.4:5620080-5620099 | MS.gene015518:CDS | 45.0% | |
| CAAGCCACTGTTATGATGCT+TGG | + | chr5.4:5620607-5620626 | MS.gene015518:CDS | 45.0% | |
| CACTGATGTTGTGTTCCCTA+AGG | - | chr5.4:5619401-5619420 | None:intergenic | 45.0% | |
| CCACAACTTCTGATGTTGAG+TGG | + | chr5.4:5619357-5619376 | MS.gene015518:CDS | 45.0% | |
| CCACTCAACATCAGAAGTTG+TGG | - | chr5.4:5619360-5619379 | None:intergenic | 45.0% | |
| CCACTGTTATGATGCTTGGA+AGG | + | chr5.4:5620611-5620630 | MS.gene015518:CDS | 45.0% | |
| CCTTCCAAGCATCATAACAG+TGG | - | chr5.4:5620614-5620633 | None:intergenic | 45.0% | |
| CGAATGTGAGATCCCATAGT+CGG | + | chr5.4:5619965-5619984 | MS.gene015518:intron | 45.0% | |
| CGATCCAAATGAGAACCCTT+TGG | + | chr5.4:5620231-5620250 | MS.gene015518:CDS | 45.0% | |
| CTTGGACCAAGAAGCTTTCA+GGG | + | chr5.4:5620144-5620163 | MS.gene015518:CDS | 45.0% | |
| GAAATGAGGGAAACCTCTAC+CGG | - | chr5.4:5619501-5619520 | None:intergenic | 45.0% | |
| GCCAATTTCAACGGGTCATT+TGG | + | chr5.4:5620195-5620214 | MS.gene015518:CDS | 45.0% | |
| GGATCTCACATTCGTGACAA+CGG | - | chr5.4:5619959-5619978 | None:intergenic | 45.0% | |
| GGTCAGGAGTAAGTCTACTA+TGG | + | chr5.4:5617260-5617279 | MS.gene015518:intron | 45.0% | |
| GGTGGAAGTTGTTTGAATGC+TGG | + | chr5.4:5617169-5617188 | MS.gene015518:CDS | 45.0% | |
| GTAGGTGTATTGCCTGACAA+TGG | + | chr5.4:5618139-5618158 | MS.gene015518:CDS | 45.0% | |
| GTCAATGGCAATCAGCAGTT+AGG | + | chr5.4:5618101-5618120 | MS.gene015518:CDS | 45.0% | |
| GTTGTATTCAAGGATGCACG+AGG | + | chr5.4:5619261-5619280 | MS.gene015518:CDS | 45.0% | |
| TCTTTAATTGCAGGGGAGTC+GGG | - | chr5.4:5619802-5619821 | None:intergenic | 45.0% | |
| TTACGTACCTTACGTAGCGA+GGG | - | chr5.4:5617213-5617232 | None:intergenic | 45.0% | |
| TTGGACCAAGAAGCTTTCAG+GGG | + | chr5.4:5620145-5620164 | MS.gene015518:CDS | 45.0% | |
| ! | ACACACTGCTGCTGATCTTT+TGG | + | chr5.4:5618228-5618247 | MS.gene015518:CDS | 45.0% |
| ! | CTTCGGAATGTTTTCTCCCA+AGG | + | chr5.4:5619596-5619615 | MS.gene015518:CDS | 45.0% |
| ! | GTCTCTTTGAGAACCTGTGA+AGG | - | chr5.4:5619577-5619596 | None:intergenic | 45.0% |
| !! | ATGGTGGTTGTCAAGTTGGT+AGG | + | chr5.4:5620494-5620513 | MS.gene015518:CDS | 45.0% |
| !! | TGCTTTTGCTATGGCTTCTG+GGG | - | chr5.4:5620107-5620126 | None:intergenic | 45.0% |
| !! | TGGTGGTTGTCAAGTTGGTA+GGG | + | chr5.4:5620495-5620514 | MS.gene015518:CDS | 45.0% |
| !! | TTAATATATAAAATCAATAA+GGG | + | chr5.4:5617598-5617617 | MS.gene015518:intron | 5.0% |
| !! | TTTAATATATAAAATCAATA+AGG | + | chr5.4:5617597-5617616 | MS.gene015518:intron | 5.0% |
| !!! | AAAATAAAAATCTATTTTTA+TGG | + | chr5.4:5619904-5619923 | MS.gene015518:intron | 5.0% |
| AACTCAAGGGCTCGTGTTCT+AGG | + | chr5.4:5617145-5617164 | MS.gene015518:CDS | 50.0% | |
| AATCGTTGAGCAGGAGAGGA+AGG | - | chr5.4:5617103-5617122 | None:intergenic | 50.0% | |
| AATGAGGGAAACCTCTACCG+GGG | - | chr5.4:5619499-5619518 | None:intergenic | 50.0% | |
| AGCTACATTGAAGCCGCTAG+CGG | + | chr5.4:5619546-5619565 | MS.gene015518:CDS | 50.0% | |
| ATAGTATCCGCTGGTGCACT+AGG | + | chr5.4:5619330-5619349 | MS.gene015518:CDS | 50.0% | |
| ATCCACCCCTGAAAGCTTCT+TGG | - | chr5.4:5620153-5620172 | None:intergenic | 50.0% | |
| ATGCACGAGGGACAGAACAT+AGG | + | chr5.4:5619274-5619293 | MS.gene015518:CDS | 50.0% | |
| CAACTAAGCACGGGACAACA+TGG | - | chr5.4:5618801-5618820 | None:intergenic | 50.0% | |
| CATGCATTGCGCGTAATCGA+CGG | + | chr5.4:5620550-5620569 | MS.gene015518:CDS | 50.0% | |
| CATGTTGTCCCGTGCTTAGT+TGG | + | chr5.4:5618799-5618818 | MS.gene015518:intron | 50.0% | |
| CGTCTGACTGCATGAATGCA+CGG | - | chr5.4:5619827-5619846 | None:intergenic | 50.0% | |
| CGTGCATTCATGCAGTCAGA+CGG | + | chr5.4:5619825-5619844 | MS.gene015518:intron | 50.0% | |
| GATTGCCATTGACGCATAGG+AGG | - | chr5.4:5618094-5618113 | None:intergenic | 50.0% | |
| GCTGATTGCCATTGACGCAT+AGG | - | chr5.4:5618097-5618116 | None:intergenic | 50.0% | |
| GCTTGGACCAAGAAGCTTTC+AGG | + | chr5.4:5620143-5620162 | MS.gene015518:CDS | 50.0% | |
| GTTACGTACCTTACGTAGCG+AGG | - | chr5.4:5617214-5617233 | None:intergenic | 50.0% | |
| TAAATGGGTGGAGAGAGTGG+TGG | + | chr5.4:5618060-5618079 | MS.gene015518:CDS | 50.0% | |
| TGCACGAGGGACAGAACATA+GGG | + | chr5.4:5619275-5619294 | MS.gene015518:CDS | 50.0% | |
| TGGAGCAGCACATCACCTTA+GGG | + | chr5.4:5619383-5619402 | MS.gene015518:CDS | 50.0% | |
| TGGCAATCAGCAGTTAGGGA+TGG | + | chr5.4:5618106-5618125 | MS.gene015518:CDS | 50.0% | |
| TGGGATAGTGTTGCAGCCAA+AGG | - | chr5.4:5616980-5616999 | None:intergenic | 50.0% | |
| TGTTTCCGCCAACTAAGCAC+GGG | - | chr5.4:5618810-5618829 | None:intergenic | 50.0% | |
| TTATGTCCCATCTCCTTCCC+CGG | + | chr5.4:5619479-5619498 | MS.gene015518:CDS | 50.0% | |
| TTGGAGCAGCACATCACCTT+AGG | + | chr5.4:5619382-5619401 | MS.gene015518:CDS | 50.0% | |
| TTTGGCCTCCTATGCGTCAA+TGG | + | chr5.4:5618086-5618105 | MS.gene015518:CDS | 50.0% | |
| ! | GTGGCTTGAGGATTTGTTCC+AGG | - | chr5.4:5620595-5620614 | None:intergenic | 50.0% |
| ! | TGGAGAGAGTGGTGGCATTT+TGG | + | chr5.4:5618068-5618087 | MS.gene015518:CDS | 50.0% |
| !! | ATAATTGGTGGTGGCACTGC+AGG | + | chr5.4:5616950-5616969 | MS.gene015518:CDS | 50.0% |
| !! | GAACGTGGTGGATCACCTTA+TGG | + | chr5.4:5617022-5617041 | MS.gene015518:CDS | 50.0% |
| !! | TAATTGGTGGTGGCACTGCA+GGG | + | chr5.4:5616951-5616970 | MS.gene015518:CDS | 50.0% |
| !!! | AGGGTTTTGGTGCTTGAACG+TGG | + | chr5.4:5617007-5617026 | MS.gene015518:CDS | 50.0% |
| !!! | GTTTTGGTGCTTGAACGTGG+TGG | + | chr5.4:5617010-5617029 | MS.gene015518:CDS | 50.0% |
| GACCAAGAAGCTTTCAGGGG+TGG | + | chr5.4:5620148-5620167 | MS.gene015518:CDS | 55.0% | |
| GCAGTCAGACGGTAGTCGTT+TGG | + | chr5.4:5619836-5619855 | MS.gene015518:intron | 55.0% | |
| GTTGTCCCGTGCTTAGTTGG+CGG | + | chr5.4:5618802-5618821 | MS.gene015518:intron | 55.0% | |
| ! | CGTCGATTACGCGCAATGCA+TGG | - | chr5.4:5620552-5620571 | None:intergenic | 55.0% |
| ! | TCAAGGGCTCGTGTTCTAGG+TGG | + | chr5.4:5617148-5617167 | MS.gene015518:CDS | 55.0% |
| ! | TCTGGGGTCCTTTGCTTTGG+TGG | - | chr5.4:5620091-5620110 | None:intergenic | 55.0% |
| ! | TGTGAAGGTTGTGCCGCTAG+CGG | - | chr5.4:5619562-5619581 | None:intergenic | 55.0% |
| !! | GCTTCTGGGGTCCTTTGCTT+TGG | - | chr5.4:5620094-5620113 | None:intergenic | 55.0% |
| ACCTCTACCGGGGAAGGAGA+TGG | - | chr5.4:5619489-5619508 | None:intergenic | 60.0% | |
| AGGGAAACCTCTACCGGGGA+AGG | - | chr5.4:5619495-5619514 | None:intergenic | 60.0% | |
| CCTCTACCGGGGAAGGAGAT+GGG | - | chr5.4:5619488-5619507 | None:intergenic | 60.0% | |
| GCTAGCGGCACAACCTTCAC+AGG | + | chr5.4:5619561-5619580 | MS.gene015518:CDS | 60.0% | |
| GTGCAAGCCCTCGCTACGTA+AGG | + | chr5.4:5617203-5617222 | MS.gene015518:CDS | 60.0% | |
| TGGGCTACCTAGTGCACCAG+CGG | - | chr5.4:5619340-5619359 | None:intergenic | 60.0% | |
| ! | AGGGCTCGTGTTCTAGGTGG+TGG | + | chr5.4:5617151-5617170 | MS.gene015518:CDS | 60.0% |
| ! | TGGCACTGCAGGGTGTCCTT+TGG | + | chr5.4:5616961-5616980 | MS.gene015518:CDS | 60.0% |
| CCCATCTCCTTCCCCGGTAG+AGG | + | chr5.4:5619485-5619504 | MS.gene015518:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 5616902 | 5620849 | 5616902 | ID=MS.gene015518 |
| chr5.4 | mRNA | 5616902 | 5620849 | 5616902 | ID=MS.gene015518.t1;Parent=MS.gene015518 |
| chr5.4 | exon | 5616902 | 5617224 | 5616902 | ID=MS.gene015518.t1.exon1;Parent=MS.gene015518.t1 |
| chr5.4 | CDS | 5616902 | 5617224 | 5616902 | ID=cds.MS.gene015518.t1;Parent=MS.gene015518.t1 |
| chr5.4 | exon | 5618021 | 5618325 | 5618021 | ID=MS.gene015518.t1.exon2;Parent=MS.gene015518.t1 |
| chr5.4 | CDS | 5618021 | 5618325 | 5618021 | ID=cds.MS.gene015518.t1;Parent=MS.gene015518.t1 |
| chr5.4 | exon | 5619229 | 5619617 | 5619229 | ID=MS.gene015518.t1.exon3;Parent=MS.gene015518.t1 |
| chr5.4 | CDS | 5619229 | 5619617 | 5619229 | ID=cds.MS.gene015518.t1;Parent=MS.gene015518.t1 |
| chr5.4 | exon | 5620067 | 5620632 | 5620067 | ID=MS.gene015518.t1.exon4;Parent=MS.gene015518.t1 |
| chr5.4 | CDS | 5620067 | 5620632 | 5620067 | ID=cds.MS.gene015518.t1;Parent=MS.gene015518.t1 |
| chr5.4 | exon | 5620795 | 5620849 | 5620795 | ID=MS.gene015518.t1.exon5;Parent=MS.gene015518.t1 |
| chr5.4 | CDS | 5620795 | 5620849 | 5620795 | ID=cds.MS.gene015518.t1;Parent=MS.gene015518.t1 |
| Gene Sequence |
| Protein sequence |
