Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015519.t1 | XP_003611165.1 | 88.6 | 580 | 50 | 2 | 1 | 564 | 1 | 580 | 3.10E-297 | 1030.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015519.t1 | Q9S746 | 53.4 | 530 | 224 | 4 | 48 | 558 | 63 | 588 | 1.1e-157 | 558.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015519.t1 | G7KER6 | 88.6 | 580 | 50 | 2 | 1 | 564 | 1 | 580 | 2.2e-297 | 1030.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015519 | MS.gene070492 | PPI |
| MS.gene016743 | MS.gene015519 | PPI |
| MS.gene015519 | MS.gene070510 | PPI |
| MS.gene015519 | MS.gene070511 | PPI |
| MS.gene016742 | MS.gene015519 | PPI |
| MS.gene81622 | MS.gene015519 | PPI |
| MS.gene015519 | MS.gene67840 | PPI |
| MS.gene015519 | MS.gene37911 | PPI |
| MS.gene015519 | MS.gene070509 | PPI |
| MS.gene070505 | MS.gene015519 | PPI |
| MS.gene057886 | MS.gene015519 | PPI |
| MS.gene015519 | MS.gene81620 | PPI |
| MS.gene015519 | MS.gene81617 | PPI |
| MS.gene015519 | MS.gene016758 | PPI |
| MS.gene015519 | MS.gene070503 | PPI |
| MS.gene015519 | MS.gene070507 | PPI |
| MS.gene015519 | MS.gene057884 | PPI |
| MS.gene81615 | MS.gene015519 | PPI |
| MS.gene015519 | MS.gene057883 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015519.t1 | MTR_5g011010 | 88.621 | 580 | 50 | 2 | 1 | 564 | 1 | 580 | 0.0 | 1040 |
| MS.gene015519.t1 | MTR_5g011020 | 83.824 | 544 | 72 | 2 | 36 | 563 | 1 | 544 | 0.0 | 941 |
| MS.gene015519.t1 | MTR_1g101770 | 55.556 | 576 | 234 | 6 | 1 | 558 | 1 | 572 | 0.0 | 625 |
| MS.gene015519.t1 | MTR_2g100070 | 51.525 | 590 | 249 | 7 | 1 | 558 | 4 | 588 | 0.0 | 597 |
| MS.gene015519.t1 | MTR_8g016320 | 52.686 | 577 | 237 | 7 | 9 | 558 | 13 | 580 | 0.0 | 581 |
| MS.gene015519.t1 | MTR_4g005860 | 46.442 | 534 | 258 | 7 | 36 | 557 | 42 | 559 | 2.51e-151 | 446 |
| MS.gene015519.t1 | MTR_5g041340 | 42.982 | 570 | 263 | 14 | 8 | 564 | 18 | 538 | 2.67e-143 | 425 |
| MS.gene015519.t1 | MTR_1g101760 | 47.451 | 510 | 174 | 8 | 1 | 468 | 1 | 458 | 5.23e-136 | 403 |
| MS.gene015519.t1 | MTR_5g024110 | 60.714 | 56 | 22 | 0 | 184 | 239 | 23 | 78 | 7.42e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015519.t1 | AT1G12570 | 60.139 | 577 | 191 | 10 | 6 | 558 | 8 | 569 | 0.0 | 679 |
| MS.gene015519.t1 | AT3G56060 | 58.333 | 552 | 212 | 5 | 22 | 558 | 20 | 568 | 0.0 | 646 |
| MS.gene015519.t1 | AT5G51950 | 54.889 | 583 | 235 | 4 | 4 | 564 | 5 | 581 | 0.0 | 639 |
| MS.gene015519.t1 | AT5G51950 | 54.701 | 585 | 235 | 5 | 4 | 564 | 5 | 583 | 0.0 | 639 |
| MS.gene015519.t1 | AT5G51950 | 56.624 | 551 | 214 | 3 | 36 | 564 | 1 | 548 | 0.0 | 629 |
| MS.gene015519.t1 | AT5G51930 | 53.888 | 553 | 227 | 5 | 29 | 562 | 7 | 550 | 0.0 | 582 |
| MS.gene015519.t1 | AT1G72970 | 53.383 | 532 | 225 | 4 | 46 | 558 | 61 | 588 | 0.0 | 575 |
| MS.gene015519.t1 | AT5G51930 | 54.004 | 537 | 219 | 5 | 30 | 547 | 55 | 582 | 0.0 | 565 |
| MS.gene015519.t1 | AT1G72970 | 52.166 | 531 | 206 | 4 | 46 | 558 | 61 | 561 | 0.0 | 546 |
| MS.gene015519.t1 | AT1G73050 | 48.872 | 532 | 243 | 8 | 35 | 558 | 41 | 551 | 1.23e-166 | 485 |
| MS.gene015519.t1 | AT1G14185 | 43.580 | 514 | 237 | 9 | 48 | 556 | 37 | 502 | 4.00e-135 | 402 |
| MS.gene015519.t1 | AT1G14190 | 42.610 | 521 | 247 | 10 | 48 | 563 | 16 | 489 | 1.60e-132 | 396 |
| MS.gene015519.t1 | AT1G14190 | 42.610 | 521 | 247 | 10 | 48 | 563 | 37 | 510 | 2.30e-132 | 396 |
Find 147 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCAAAACCCTATGATTT+TGG | 0.129479 | 5.4:-5608993 | None:intergenic |
| GATATGTTATTGTATTTAAA+TGG | 0.164664 | 5.4:-5614812 | None:intergenic |
| TAATTTGGTGTGCAGGTATA+TGG | 0.191827 | 5.4:+5615219 | MS.gene015519:intron |
| CACAAATACTTCAATGTCTT+TGG | 0.202029 | 5.4:+5614892 | MS.gene015519:CDS |
| TGGAGAGAGTGGTGGCTTTC+CGG | 0.223933 | 5.4:+5612404 | MS.gene015519:CDS |
| GGTAACATTTAACTACTTTC+AGG | 0.239795 | 5.4:+5614715 | MS.gene015519:CDS |
| TTTATCTATACAATACTAAT+TGG | 0.241525 | 5.4:-5615281 | None:intergenic |
| ATCCACCTCTTAAAGCTTCT+TGG | 0.248345 | 5.4:-5614613 | None:intergenic |
| TAGTGAATGAATCATATAAA+TGG | 0.250727 | 5.4:+5612380 | MS.gene015519:CDS |
| CTAATTCTTCTTTCTCTTGC+TGG | 0.252017 | 5.4:+5600327 | MS.gene015519:CDS |
| GGCAATGGCAATCAGCATTT+AGG | 0.252686 | 5.4:+5612437 | MS.gene015519:CDS |
| ACACACTGCAGCTGATCTTT+TGG | 0.267372 | 5.4:+5612564 | MS.gene015519:CDS |
| TACTATGATTACATCATAAT+TGG | 0.268871 | 5.4:+5608931 | MS.gene015519:CDS |
| AACACCAAAGGCACTTAAAT+TGG | 0.269145 | 5.4:-5609055 | None:intergenic |
| TCCAATTTCAACAGGTCATT+TGG | 0.276460 | 5.4:+5614658 | MS.gene015519:intron |
| GCACTTAAATTGGTTATGTT+TGG | 0.292211 | 5.4:-5609045 | None:intergenic |
| CAGTGTGTCTTTGACCATTT+TGG | 0.294524 | 5.4:-5612549 | None:intergenic |
| GAGCGTGGTGGATCACCTTA+TGG | 0.299780 | 5.4:+5609018 | MS.gene015519:CDS |
| GTTACCAAAGGGTTCTCATT+TGG | 0.324244 | 5.4:-5614698 | None:intergenic |
| GGTACAATCTTTGACCAAAA+TGG | 0.327169 | 5.4:+5612535 | MS.gene015519:CDS |
| GGTTGTTGATAATGATTATA+AGG | 0.328782 | 5.4:+5614979 | MS.gene015519:CDS |
| CAACACTGTCCCAAAATCAT+AGG | 0.334235 | 5.4:+5608983 | MS.gene015519:CDS |
| AACTCAAGAGCTCGTGTTCT+TGG | 0.335722 | 5.4:+5609141 | MS.gene015519:CDS |
| ATGCATCTTTCTAAGTCTCT+TGG | 0.342163 | 5.4:-5614740 | None:intergenic |
| GTCCCAAAATCATAGGGTTT+TGG | 0.342876 | 5.4:+5608990 | MS.gene015519:CDS |
| CTCTTAAAGCTTCTTGGTCT+AGG | 0.345612 | 5.4:-5614607 | None:intergenic |
| CTTCTGATGTTGAGTGGAAT+TGG | 0.347818 | 5.4:+5613704 | MS.gene015519:CDS |
| CTATGAGATGCACAATGTTT+AGG | 0.347912 | 5.4:-5600363 | None:intergenic |
| TTTACTTATGATCATATTCA+TGG | 0.365015 | 5.4:+5612499 | MS.gene015519:CDS |
| ATAACCAATTTAAGTGCCTT+TGG | 0.375662 | 5.4:+5609051 | MS.gene015519:CDS |
| ATTGAAGTATTTGTGTGTTT+AGG | 0.379914 | 5.4:-5614884 | None:intergenic |
| GATAATGATTATAAGGTTCT+TGG | 0.380549 | 5.4:+5614986 | MS.gene015519:CDS |
| GTTTCCCTCGTTTCGGTTGT+TGG | 0.384265 | 5.4:+5613848 | MS.gene015519:CDS |
| ATCTTGTTTACAACACATAA+AGG | 0.387469 | 5.4:+5612640 | MS.gene015519:CDS |
| TTGGAGCAGCACATCACCTT+AGG | 0.392870 | 5.4:+5613723 | MS.gene015519:CDS |
| TCTTCTACGGTCCTTTGCTT+TGG | 0.394930 | 5.4:-5614554 | None:intergenic |
| TGCATCTTTCTAAGTCTCTT+GGG | 0.395588 | 5.4:-5614739 | None:intergenic |
| TCTACGGTCCTTTGCTTTGG+TGG | 0.403160 | 5.4:-5614551 | None:intergenic |
| CAACGATTCATTTCTGAAGA+TGG | 0.409151 | 5.4:+5609111 | MS.gene015519:CDS |
| GGTAGAAGTTTCCCTCGTTT+CGG | 0.410531 | 5.4:+5613841 | MS.gene015519:CDS |
| GCAATGGCAATCAGCATTTA+GGG | 0.411044 | 5.4:+5612438 | MS.gene015519:CDS |
| GGGACATAAACACCGTTCAT+TGG | 0.415396 | 5.4:-5613806 | None:intergenic |
| AGGGATGGATTGTTGGAAGT+AGG | 0.420611 | 5.4:+5612457 | MS.gene015519:CDS |
| AGTGAATGAATCATATAAAT+GGG | 0.434979 | 5.4:+5612381 | MS.gene015519:CDS |
| ATGGTGGTTGTCAAGTTGGT+AGG | 0.436196 | 5.4:+5614957 | MS.gene015519:CDS |
| AATTTGGTGTGCAGGTATAT+GGG | 0.437345 | 5.4:+5615220 | MS.gene015519:intron |
| TCTACCTTCAACTATTCTCC+TGG | 0.441618 | 5.4:+5615037 | MS.gene015519:CDS |
| GGACATAAACACCGTTCATT+GGG | 0.442992 | 5.4:-5613805 | None:intergenic |
| CTCGAGCCTTGTAGCGAGAT+CGG | 0.445785 | 5.4:+5613901 | MS.gene015519:CDS |
| TGATCATATTCATGGTACTA+AGG | 0.445964 | 5.4:+5612507 | MS.gene015519:CDS |
| ATAATTGGTGGTGGCACCGC+AGG | 0.447088 | 5.4:+5608946 | MS.gene015519:CDS |
| GTTATGTTTGGATTCCCATA+AGG | 0.448821 | 5.4:-5609033 | None:intergenic |
| CTTTACAATGTTTACTTCAA+AGG | 0.450532 | 5.4:+5613931 | MS.gene015519:CDS |
| AGCATTTAGGGATGGATTGT+TGG | 0.451769 | 5.4:+5612450 | MS.gene015519:CDS |
| GAGACACTGTGATGACTATA+TGG | 0.455474 | 5.4:+5614927 | MS.gene015519:CDS |
| CATATTCATGGTACTAAGGT+TGG | 0.459009 | 5.4:+5612511 | MS.gene015519:CDS |
| GATTCAAGGCCTGTTGCATA+TGG | 0.462011 | 5.4:+5613578 | MS.gene015519:CDS |
| AATTATGATGTAATCATAGT+AGG | 0.465553 | 5.4:-5608929 | None:intergenic |
| TCCGGCCTCCTATGCGGCAA+TGG | 0.465757 | 5.4:+5612422 | MS.gene015519:CDS |
| GGTGGAAGTTGTTTGAATGC+TGG | 0.469750 | 5.4:+5609165 | MS.gene015519:CDS |
| AAACAGAAAGATCAGATTCA+AGG | 0.470806 | 5.4:+5613564 | MS.gene015519:intron |
| CATAGGGCATACTTGAATCA+TGG | 0.471458 | 5.4:+5613632 | MS.gene015519:CDS |
| CAAGCCACTCTTATGATGCT+TGG | 0.471885 | 5.4:+5615070 | MS.gene015519:CDS |
| AGCGTGGTGGATCACCTTAT+GGG | 0.475507 | 5.4:+5609019 | MS.gene015519:CDS |
| AGAGCTCGTGTTCTTGGTGG+TGG | 0.475766 | 5.4:+5609147 | MS.gene015519:CDS |
| TACCATGGTGGTTGTCAAGT+TGG | 0.476390 | 5.4:+5614953 | MS.gene015519:CDS |
| TCGAGCCTTGTAGCGAGATC+GGG | 0.481634 | 5.4:+5613902 | MS.gene015519:CDS |
| AATACAACTCCATATGCAAC+AGG | 0.483363 | 5.4:-5613587 | None:intergenic |
| TTATGTCCCGTCTCCTTCCT+CGG | 0.485577 | 5.4:+5613820 | MS.gene015519:CDS |
| TGGCACCGCAGGGTGTCCTT+TGG | 0.491456 | 5.4:+5608957 | MS.gene015519:CDS |
| CTGTGTTACCTTACGTAGTG+AGG | 0.494800 | 5.4:-5609207 | None:intergenic |
| CTCTTCCCGATCTCGCTACA+AGG | 0.506746 | 5.4:-5613907 | None:intergenic |
| CATACTTGAATCATGGGACT+AGG | 0.514923 | 5.4:+5613639 | MS.gene015519:CDS |
| GCCATTGCCGCATAGGAGGC+CGG | 0.515320 | 5.4:-5612423 | None:intergenic |
| ATATAAATGGGTGGAGAGAG+TGG | 0.516063 | 5.4:+5612393 | MS.gene015519:CDS |
| AGTAGTTAAATGTTACCAAA+GGG | 0.518064 | 5.4:-5614709 | None:intergenic |
| CTAGACCAAGAAGCTTTAAG+AGG | 0.519070 | 5.4:+5614608 | MS.gene015519:CDS |
| TCATAAGTAAAGCCATTGTA+AGG | 0.519648 | 5.4:-5612487 | None:intergenic |
| TCAAGAGCTCGTGTTCTTGG+TGG | 0.520567 | 5.4:+5609144 | MS.gene015519:CDS |
| TGATCCAAATGAGAACCCTT+TGG | 0.520987 | 5.4:+5614694 | MS.gene015519:CDS |
| TCAGAAATGAATCGTTGAGC+AGG | 0.522804 | 5.4:-5609105 | None:intergenic |
| CCACTCAACATCAGAAGTTG+TGG | 0.523098 | 5.4:-5613698 | None:intergenic |
| GCTGATTGCCATTGCCGCAT+AGG | 0.525618 | 5.4:-5612430 | None:intergenic |
| CTAAAATGGGTGCTTTGTTG+TGG | 0.527843 | 5.4:+5600301 | None:intergenic |
| TTCAATGTAGCTGCCGAAGT+TGG | 0.528678 | 5.4:-5613876 | None:intergenic |
| CAAAGTTGCCACCAAAGCAA+AGG | 0.531704 | 5.4:+5614543 | MS.gene015519:CDS |
| CACTCAACATCAGAAGTTGT+GGG | 0.533196 | 5.4:-5613697 | None:intergenic |
| TTCAGAGAAGTCGGATGGGA+GGG | 0.534832 | 5.4:+5612352 | MS.gene015519:intron |
| TGCACGAGGAACAGAACATA+GGG | 0.534856 | 5.4:+5613616 | MS.gene015519:CDS |
| GTGGCTTGAGGATTAGCTCC+AGG | 0.536386 | 5.4:-5615055 | None:intergenic |
| AATCGTTGAGCAGGAGAGGA+AGG | 0.537483 | 5.4:-5609096 | None:intergenic |
| TATGATTACATCATAATTGG+TGG | 0.541797 | 5.4:+5608934 | MS.gene015519:CDS |
| ATAGGGCATACTTGAATCAT+GGG | 0.543396 | 5.4:+5613633 | MS.gene015519:CDS |
| ATAGTATCCGCTGGTGCACT+AGG | 0.543415 | 5.4:+5613671 | MS.gene015519:CDS |
| TGGAGCAGCACATCACCTTA+GGG | 0.545444 | 5.4:+5613724 | MS.gene015519:CDS |
| GACTTAGAAAGATGCATACA+AGG | 0.549132 | 5.4:+5614746 | MS.gene015519:CDS |
| GATTGCCATTGCCGCATAGG+AGG | 0.549705 | 5.4:-5612427 | None:intergenic |
| TGGGACAGTGTTGCAGCCAA+AGG | 0.549940 | 5.4:-5608973 | None:intergenic |
| AATGAATCGTTGAGCAGGAG+AGG | 0.550548 | 5.4:-5609100 | None:intergenic |
| CCTTCCAAGCATCATAAGAG+TGG | 0.552813 | 5.4:-5615074 | None:intergenic |
| CCACTCTTATGATGCTTGGA+AGG | 0.553215 | 5.4:+5615074 | MS.gene015519:CDS |
| TGTGTTACCTTACGTAGTGA+GGG | 0.555268 | 5.4:-5609206 | None:intergenic |
| TGGTGGTTGTCAAGTTGGTA+GGG | 0.555852 | 5.4:+5614958 | MS.gene015519:CDS |
| CTTCTACCGAGGAAGGAGAC+GGG | 0.556620 | 5.4:-5613826 | None:intergenic |
| AAGTAGTTAAATGTTACCAA+AGG | 0.558085 | 5.4:-5614710 | None:intergenic |
| AACGAGGGAAACTTCTACCG+AGG | 0.563059 | 5.4:-5613837 | None:intergenic |
| TGTAGTGTTAGATCAACCTC+TGG | 0.567055 | 5.4:+5613760 | MS.gene015519:CDS |
| TGCATATGGAGTTGTATTCA+AGG | 0.567127 | 5.4:+5613592 | MS.gene015519:CDS |
| AGCTCCAGGAGAATAGTTGA+AGG | 0.573988 | 5.4:-5615041 | None:intergenic |
| TAATCATAGTAGGATATGCT+TGG | 0.578437 | 5.4:-5608919 | None:intergenic |
| GATTACATCATAATTGGTGG+TGG | 0.578599 | 5.4:+5608937 | MS.gene015519:CDS |
| GATGCATTGCGCGTAATCGA+TGG | 0.579766 | 5.4:+5615013 | MS.gene015519:CDS |
| GTTGTTGGCATTACCAACTT+CGG | 0.581811 | 5.4:+5613863 | MS.gene015519:CDS |
| ATGCACGAGGAACAGAACAT+AGG | 0.583698 | 5.4:+5613615 | MS.gene015519:CDS |
| AACACTGTCCCAAAATCATA+GGG | 0.588880 | 5.4:+5608984 | MS.gene015519:CDS |
| ACTTCTACCGAGGAAGGAGA+CGG | 0.591971 | 5.4:-5613827 | None:intergenic |
| CACTGATGTTGTGTTCCCTA+AGG | 0.592785 | 5.4:-5613739 | None:intergenic |
| ATTCATGGTACTAAGGTTGG+AGG | 0.594217 | 5.4:+5612514 | MS.gene015519:CDS |
| TGGCAATCAGCATTTAGGGA+TGG | 0.595466 | 5.4:+5612442 | MS.gene015519:CDS |
| GTGCAAGCCCTCACTACGTA+AGG | 0.598260 | 5.4:+5609199 | MS.gene015519:CDS |
| GTGTTAGATCAACCTCTGGT+AGG | 0.603080 | 5.4:+5613764 | MS.gene015519:CDS |
| AGTGAGATCATAGTATCCGC+TGG | 0.603906 | 5.4:+5613662 | MS.gene015519:CDS |
| AAACATTGTGCATCTCATAG+AGG | 0.610416 | 5.4:+5600366 | MS.gene015519:CDS |
| AGGGAAACTTCTACCGAGGA+AGG | 0.610577 | 5.4:-5613833 | None:intergenic |
| GTAGGAGTATTGCCTTACAA+TGG | 0.614325 | 5.4:+5612475 | MS.gene015519:CDS |
| TTTCAGAGAAGTCGGATGGG+AGG | 0.615969 | 5.4:+5612351 | MS.gene015519:intron |
| GACATTCCTTGTCCTACCAG+AGG | 0.617420 | 5.4:-5613776 | None:intergenic |
| CGATCTCGCTACAAGGCTCG+AGG | 0.630488 | 5.4:-5613900 | None:intergenic |
| TAATTGGTGGTGGCACCGCA+GGG | 0.631311 | 5.4:+5608947 | MS.gene015519:CDS |
| ATCAGAGAGTGCAACACCAA+AGG | 0.635333 | 5.4:-5609067 | None:intergenic |
| TGGCTTTCCGGCCTCCTATG+CGG | 0.646397 | 5.4:+5612416 | MS.gene015519:CDS |
| GAATGAATCATATAAATGGG+TGG | 0.647578 | 5.4:+5612384 | MS.gene015519:CDS |
| TGTAAACAAGATCTTATGAA+CGG | 0.649716 | 5.4:-5612629 | None:intergenic |
| ATGTCAGATAACCCAATGAA+CGG | 0.650288 | 5.4:+5613794 | MS.gene015519:CDS |
| TGGGCTACCTAGTGCACCAG+CGG | 0.650652 | 5.4:-5613678 | None:intergenic |
| CCACAACTTCTGATGTTGAG+TGG | 0.651050 | 5.4:+5613698 | MS.gene015519:CDS |
| GATCAACCTCTGGTAGGACA+AGG | 0.659119 | 5.4:+5613770 | MS.gene015519:CDS |
| TAATGCCAACAACCGAAACG+AGG | 0.664426 | 5.4:-5613853 | None:intergenic |
| TACCAACTTGACAACCACCA+TGG | 0.670597 | 5.4:-5614955 | None:intergenic |
| AATGCCAACAACCGAAACGA+GGG | 0.675853 | 5.4:-5613852 | None:intergenic |
| TGCAGCCAAAGGACACCCTG+CGG | 0.688010 | 5.4:-5608962 | None:intergenic |
| AGCATCATAAGAGTGGCTTG+AGG | 0.692872 | 5.4:-5615067 | None:intergenic |
| AAACAAGATCTTATGAACGG+TGG | 0.704729 | 5.4:-5612626 | None:intergenic |
| GTTGTATTCAAGGATGCACG+AGG | 0.718774 | 5.4:+5613602 | MS.gene015519:CDS |
| TAAATGGGTGGAGAGAGTGG+TGG | 0.740595 | 5.4:+5612396 | MS.gene015519:CDS |
| ATGACTATATGGCATTACCA+TGG | 0.746721 | 5.4:+5614938 | MS.gene015519:CDS |
| ACTATATGGCATTACCATGG+TGG | 0.762595 | 5.4:+5614941 | MS.gene015519:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 5600306 | 5615288 | 5600306 | ID=MS.gene015519 |
| chr5.4 | mRNA | 5600306 | 5615288 | 5600306 | ID=MS.gene015519.t1;Parent=MS.gene015519 |
| chr5.4 | exon | 5600306 | 5600387 | 5600306 | ID=MS.gene015519.t1.exon1;Parent=MS.gene015519.t1 |
| chr5.4 | CDS | 5600306 | 5600387 | 5600306 | ID=cds.MS.gene015519.t1;Parent=MS.gene015519.t1 |
| chr5.4 | exon | 5608875 | 5609220 | 5608875 | ID=MS.gene015519.t1.exon2;Parent=MS.gene015519.t1 |
| chr5.4 | CDS | 5608875 | 5609220 | 5608875 | ID=cds.MS.gene015519.t1;Parent=MS.gene015519.t1 |
| chr5.4 | exon | 5612357 | 5612661 | 5612357 | ID=MS.gene015519.t1.exon3;Parent=MS.gene015519.t1 |
| chr5.4 | CDS | 5612357 | 5612661 | 5612357 | ID=cds.MS.gene015519.t1;Parent=MS.gene015519.t1 |
| chr5.4 | exon | 5613570 | 5613952 | 5613570 | ID=MS.gene015519.t1.exon4;Parent=MS.gene015519.t1 |
| chr5.4 | CDS | 5613570 | 5613952 | 5613570 | ID=cds.MS.gene015519.t1;Parent=MS.gene015519.t1 |
| chr5.4 | exon | 5614530 | 5614629 | 5614530 | ID=MS.gene015519.t1.exon5;Parent=MS.gene015519.t1 |
| chr5.4 | CDS | 5614530 | 5614629 | 5614530 | ID=cds.MS.gene015519.t1;Parent=MS.gene015519.t1 |
| chr5.4 | exon | 5614672 | 5615095 | 5614672 | ID=MS.gene015519.t1.exon6;Parent=MS.gene015519.t1 |
| chr5.4 | CDS | 5614672 | 5615095 | 5614672 | ID=cds.MS.gene015519.t1;Parent=MS.gene015519.t1 |
| chr5.4 | exon | 5615234 | 5615288 | 5615234 | ID=MS.gene015519.t1.exon7;Parent=MS.gene015519.t1 |
| chr5.4 | CDS | 5615234 | 5615288 | 5615234 | ID=cds.MS.gene015519.t1;Parent=MS.gene015519.t1 |
| Gene Sequence |
| Protein sequence |
