AlfalfaGEDB | MS.gene015852

M. sativa cultivar XinJiangDaYe / MS.gene015852

KEGG: K01893
GO: GO:0000166 GO:0003674 GO:0003676 GO:0003824 GO:0004812 GO:0004816 GO:0005488 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006418 GO:0006421 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0043038 GO:0043039 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564
PFAM: PF00152.23 PF00458.23 PF01336.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015852.t1	XP_003630669.1	97.6	548	13	0	14	561	4	551	1.40E-294	1021.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015852.t1	Q9SW96	71.2	549	156	1	15	561	24	572	1.6e-233	810.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015852.t1	G7LJN2	97.6	548	13	0	14	561	4	551	1.0e-294	1021.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene015852	MS.gene070503	PPI
MS.gene015852	MS.gene016758	PPI
MS.gene015852	MS.gene070511	PPI
MS.gene015852	MS.gene057884	PPI
MS.gene015852	MS.gene67840	PPI
MS.gene015852	MS.gene81617	PPI
MS.gene016742	MS.gene015852	PPI
MS.gene016743	MS.gene015852	PPI
MS.gene057883	MS.gene015852	PPI
MS.gene057886	MS.gene015852	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015852.t1	MTR_8g102050	97.993	548	11	0	14	561	4	551	0.0	1114
MS.gene015852.t1	MTR_7g101050	88.946	579	43	7	1	561	1	576	0.0	1031
MS.gene015852.t1	MTR_8g011530	46.369	537	280	5	25	560	103	632	1.66e-169	495
MS.gene015852.t1	MTR_4g100920	48.502	534	202	9	33	561	81	546	2.65e-167	486
MS.gene015852.t1	MTR_4g100920	61.453	179	65	2	279	456	266	441	6.41e-69	229
MS.gene015852.t1	MTR_4g100920	47.159	176	85	4	33	204	81	252	4.78e-43	160
MS.gene015852.t1	MTR_1g014140	30.605	281	175	8	285	558	271	538	1.10e-27	117
MS.gene015852.t1	MTR_5g028360	30.605	281	175	9	285	558	319	586	1.66e-27	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015852.t1	AT5G56680	73.866	551	142	1	13	561	22	572	0.0	879
MS.gene015852.t1	AT1G70980	71.150	565	155	5	2	561	10	571	0.0	843
MS.gene015852.t1	AT4G17300	46.995	549	219	9	18	561	86	567	6.06e-167	486
MS.gene015852.t1	AT4G17300	46.995	549	219	9	18	561	106	587	1.23e-166	486
MS.gene015852.t1	AT3G07420	47.628	506	251	7	61	560	140	637	1.15e-165	485
MS.gene015852.t1	AT3G07420	44.935	385	198	7	61	439	140	516	7.08e-109	336
MS.gene015852.t1	AT4G31180	31.317	281	173	8	285	558	288	555	2.12e-28	119
MS.gene015852.t1	AT4G31180	31.317	281	173	8	285	558	288	555	2.12e-28	119
MS.gene015852.t1	AT1G68420	63.636	77	28	0	315	391	1	77	5.53e-28	107
MS.gene015852.t1	AT4G26870	29.242	277	176	9	285	554	262	525	3.26e-26	112

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Find 139 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAATGTATCCAAGC+TGG	0.561643	4.3:-3366623	MS.gene015852:CDS
AAACATGCCGGATTCGGTCT+TGG	0.433671	4.3:-3364974	MS.gene015852:CDS
AAAGGCGAAAGCGTCCTTAT+CGG	0.375770	4.3:+3367664	None:intergenic
AACCGGAAGAAAAGCCGATA+AGG	0.487481	4.3:-3367678	MS.gene015852:CDS
AACCTGATCCGCCGTCTTCA+CGG	0.469954	4.3:+3367738	None:intergenic
AAGCGTCGACGATAACTTGA+AGG	0.525722	4.3:+3367609	None:intergenic
AAGCTTGTTGTTCAGGAGAA+GGG	0.495167	4.3:-3366724	MS.gene015852:CDS
AAGGTGAACGAAATCACGCA+AGG	0.674910	4.3:+3367406	None:intergenic
AAGTCTGCAAACGCAATTTC+AGG	0.340094	4.3:+3366382	None:intergenic
AATCATAAATCTGCTCTGCC+AGG	0.503281	4.3:+3364881	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAAATGTATCCAAGC+TGG	-	chr4.3:3366090-3366109	MS.gene015852:CDS	30.0%
AATCCCTAAATTGGAAATCT+TGG	+	chr4.3:3365487-3365506	None:intergenic	30.0%
ATATACAGGATACATACCTT+TGG	+	chr4.3:3367193-3367212	None:intergenic	30.0%
CAAAAATTTCACATATGCCT+CGG	+	chr4.3:3366631-3366650	None:intergenic	30.0%
CCAATTCCGAATAAGAATTA+TGG	+	chr4.3:3365644-3365663	None:intergenic	30.0%
CCATAATTCTTATTCGGAAT+TGG	-	chr4.3:3365641-3365660	MS.gene015852:CDS	30.0%
GGATAATTATAGACTATGAC+AGG	+	chr4.3:3367097-3367116	None:intergenic	30.0%
GTATATGTAAGTCGAATGAA+GGG	+	chr4.3:3366753-3366772	None:intergenic	30.0%
GTTATAATGTTACAGACTAG+AGG	-	chr4.3:3367654-3367673	MS.gene015852:CDS	30.0%
GTTATGATGTCATTCAACAA+AGG	-	chr4.3:3367507-3367526	MS.gene015852:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	3364883	3367852	3364883	ID=MS.gene015852
chr4.3	mRNA	3364883	3367852	3364883	ID=MS.gene015852.t1;Parent=MS.gene015852
chr4.3	exon	3367388	3367852	3367388	ID=MS.gene015852.t1.exon1;Parent=MS.gene015852.t1
chr4.3	CDS	3367388	3367852	3367388	ID=cds.MS.gene015852.t1;Parent=MS.gene015852.t1
chr4.3	exon	3366378	3366968	3366378	ID=MS.gene015852.t1.exon2;Parent=MS.gene015852.t1
chr4.3	CDS	3366378	3366968	3366378	ID=cds.MS.gene015852.t1;Parent=MS.gene015852.t1
chr4.3	exon	3365867	3366123	3365867	ID=MS.gene015852.t1.exon3;Parent=MS.gene015852.t1
chr4.3	CDS	3365867	3366123	3365867	ID=cds.MS.gene015852.t1;Parent=MS.gene015852.t1
chr4.3	exon	3365540	3365669	3365540	ID=MS.gene015852.t1.exon4;Parent=MS.gene015852.t1
chr4.3	CDS	3365540	3365669	3365540	ID=cds.MS.gene015852.t1;Parent=MS.gene015852.t1
chr4.3	exon	3365207	3365265	3365207	ID=MS.gene015852.t1.exon5;Parent=MS.gene015852.t1
chr4.3	CDS	3365207	3365265	3365207	ID=cds.MS.gene015852.t1;Parent=MS.gene015852.t1
chr4.3	exon	3364883	3365066	3364883	ID=MS.gene015852.t1.exon6;Parent=MS.gene015852.t1
chr4.3	CDS	3364883	3365066	3364883	ID=cds.MS.gene015852.t1;Parent=MS.gene015852.t1

Gene Sequence

>MS.gene015852

ATGTCAGACCTCTCATCCGACCAATTATCCACCGTAACCGAGGTTCCCAAAGCTGAATTCTCCGACAGCGTCCTGATCAAATCCATCATCCGCCGTGAAGACGGCGGATCAGGTTTAGCAGGCAAGAAAGCAAGAATCGGGGGATGGGTGAAAACCGGAAGAAAAGCCGATAAGGACGCTTTCGCCTTTTTGGAATTGAACGACGGAAGCTGCGCCGGTAACCTTCAAGTTATCGTCGACGCTTCGCTTGCTGATCTTGGACAACTTGTTCAGACTGGAACTTGTGTTGTTGTTGAGGGACATCTCAAACTTCCTCCTTCTGGAGCGAAACAGAAGATCGAGCTTCGCGCTGAACAGGTTCTTCATGTTGGTCCTGTTGATCCTGCTAAATATCCTTTGCCTAAAACCAGACTCACTCTTGAATCCTTGCGTGATTTCGTTCACCTTCGTTCCAGAACCAACACGGTAAGCTTCTTTTTTTTTTTTTTATTTCTCTCTCAATTTACAATGCCAATTGTGTATAGTAATGATGATTGAATCATATGTCCCTTCAAGACAATTTCAAAAACTAAATTGATCAATCCAAATAAACTAATGTGTTCCAAGATTTCCAATTTAGGGATTATTTTATAATTTCGTTAATTTTAGGGACCCAATTGTCTGGTCTCTACAATTTTAAGGATTGAATAGGCAACTCACCAATAAAACAACAACAGGAAATATAAAAAGTTAAATTCGGAATGAACCTTTGGTAATTACCATAATTCTTATTCGGAATTGGGAACTCTATTTATTTGCACCAGACTGAGTGTCGATGCAAAGGTGAAATTTATTTATGCTTCTGAAGCTAGTGTTTTTTATGCATGTTATTATTGGGAATGCAGATATCTGCTGTTGCTCGGATTCGGAATGCTCTTGCTTATGCTACACATACATTTTTCAACAAGCATGGGTTTCTTTATGTGCACACTCCAATTGTCACCACTAGTGATTGTGAGGGTGCTGGTGAAATGTTTCAAGTGACAACTTTGTTCAGTGAAGCAGAGAGGTTGGAGAAGGAACTGATACAGAATCCGCCTCCAACTGAAGCTGATGTTGAAGCTGCTAAGCTTGTTGTTCAGGAGAAGGGGGAGGTTGTTTCACAATTGAAATCTGCAAAAGCAGATAAGAAGGAGATTAGTGCTGCTGTGGATGAACTTAAAAAAGCAAAAGAAAATGTATCCAAGCTGGTGGAAAGATCTACACTTCAGCCCGGTATTCCTCGAAAGGACGGAAAGGTGGATTATACTAAAGATTTCTTTGCCCGTCAAGCGTTTTTGACTGTTTCTGGTCAGCTTCAAGTTGAGTCTTATGCATGTGCTCTTAGTCGCGTGTATACATTTGGCCCGACATTTCGTGCAGAGAATTCTCACACTTCCAGGCATTTGGCTGAATTTTGGATGGTAGAACCTGAAATTGCGTTTGCAGACTTGGAGGTATATAAAAATGAACACACTCTCAATCTTGTTATGATTATTCTCACTGACAGCTGTTTTCTCACATCTTTAACGCTATCAAATTATTTGTTATAAACCACATTATCGGCTGAGTGTCAATTCAAATACTGTTTTTTAGGGTAATAAACTTATTTTTCTAGTGCAATCTTGAACTGCCAACTTCACCCCTACTCCTATGGTTGGTGCTTTTGCTGTGGCAGAAACAATAACTTAATATTTGCATTATTGTGTAGGATGATATGAAGTGCGCCGAGGCATATGTGAAATTTTTGTGTCAGTGGTTACTTGACAACTGCCTTGAGGATATGGAATTTATGGCCGACAAGTTTGATAAAGGTTGCATTGATCGTTTGAAAATGGTTGCGTCAACCCCCTTCATTCGACTTACATATACAGAAGCTGTGGAAATACTGGAAGAATCTGTGACGAATGGTAAGAAATTTGAGAAAGAAGTAAAATGGGGAATAGATTTAGCTTCTGAGCATGAAAGGTACTTCTACAGTTGTTTTTTCAAGTTCTTGTTCTTATTGAATTGTGTTTTTTACGATTAATATTGGCTGTTACTTTCGTGAATGTGTGGAGTTGAACCCATGTCCTTTGCTGCTCCGCCCTATTCAACCACCAAGCCACCTTATCATTCCTCTTATTAAATTGTGTTGTTTGATGCCTTTGGGTTATGGTATGCAGATACCTAACAGAGGTGAAGTATCAGAAGCCTGTCATAGTCTATAATTATCCAAAAGAAATCAAAGCATTCTACATGCGCCTCAATGATGACCTAAAGACAGTGGCTGCTATGGATGTTCTTGTGCCAAAGGTATGTATCCTGTATATTTTGTTTTAACATGTCTATGGTGCTTGGGAAAAGAACTATAGAAGGCCTACCATCATAGTAAGCAGTGTAGACAAGAATTAGAAATAAAGAGAGATCGAAAAACTACATATCAAACTATTAAGGATTTAGATTCGTATGCATTATTAGAAAATGTAATTTACTTATATGACACTGAGTGGGGTACAGATGTGTTATATATGTTACACCCAATTGCTTTTGTGGTTGGTGTAATAGGAACGTGTAACTGTAATTTCAGGTTGGAGAGTTAATTGGGGGAAGCCAAAGGGAGGAGCGTTATGATGTCATTCAACAAAGGTAAATTATAATTTCCGCTTACACTAATTCATAAATAAACGTGTGCTCTTTTTACTGTGTTTCCTTTTGTAAAGGATTTTTCTGTTCATGGAAGATTTTTTTACTTTATTTTCCTTGTTTCTACTGTTATAATGTTACAGACTAGAGGATATGGATCTGCCTGTTGAGCCATATGAATGGTACATTGACCTGAGGCGGTATGGAACAGTGAAACATGCCGGATTCGGTCTTGGCTTTGAAAGGATGATTCTTTTTGCAACCGGCCTGGAAAATATTAGAGATGTGATTCCCTTCCCACGATATCCTGGCAGAGCAGATTTATGA

Protein sequence

>MS.gene015852.t1

MSDLSSDQLSTVTEVPKAEFSDSVLIKSIIRREDGGSGLAGKKARIGGWVKTGRKADKDAFAFLELNDGSCAGNLQVIVDASLADLGQLVQTGTCVVVEGHLKLPPSGAKQKIELRAEQVLHVGPVDPAKYPLPKTRLTLESLRDFVHLRSRTNTISAVARIRNALAYATHTFFNKHGFLYVHTPIVTTSDCEGAGEMFQVTTLFSEAERLEKELIQNPPPTEADVEAAKLVVQEKGEVVSQLKSAKADKKEISAAVDELKKAKENVSKLVERSTLQPGIPRKDGKVDYTKDFFARQAFLTVSGQLQVESYACALSRVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMKCAEAYVKFLCQWLLDNCLEDMEFMADKFDKGCIDRLKMVASTPFIRLTYTEAVEILEESVTNGKKFEKEVKWGIDLASEHERYLTEVKYQKPVIVYNYPKEIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIQQRLEDMDLPVEPYEWYIDLRRYGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL