Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017552.t1 | XP_003629175.3 | 91.3 | 563 | 14 | 1 | 1 | 528 | 80 | 642 | 4.50E-298 | 1033.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017552.t1 | Q9SEY5 | 61.2 | 556 | 169 | 3 | 1 | 509 | 48 | 603 | 1.3e-192 | 674.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017552.t1 | A0A2Z6PPA1 | 77.3 | 600 | 46 | 2 | 1 | 510 | 1 | 600 | 2.6e-263 | 917.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017552 | MS.gene21691 | PPI |
| MS.gene017552 | MS.gene049681 | PPI |
| MS.gene017552 | MS.gene008350 | PPI |
| MS.gene017552 | MS.gene26216 | PPI |
| MS.gene017552 | MS.gene025344 | PPI |
| MS.gene017552 | MS.gene22277 | PPI |
| MS.gene017552 | MS.gene061174 | PPI |
| MS.gene017552 | MS.gene009614 | PPI |
| MS.gene017552 | MS.gene017279 | PPI |
| MS.gene017552 | MS.gene070590 | PPI |
| MS.gene017552 | MS.gene061578 | PPI |
| MS.gene017552 | MS.gene041843 | PPI |
| MS.gene017552 | MS.gene041844 | PPI |
| MS.gene017552 | MS.gene99100 | PPI |
| MS.gene017552 | MS.gene032916 | PPI |
| MS.gene017552 | MS.gene55232 | PPI |
| MS.gene017552 | MS.gene21689 | PPI |
| MS.gene017552 | MS.gene05028 | PPI |
| MS.gene017552 | MS.gene024710 | PPI |
| MS.gene76590 | MS.gene017552 | PPI |
| MS.gene017552 | MS.gene024712 | PPI |
| MS.gene017552 | MS.gene061175 | PPI |
| MS.gene017552 | MS.gene21937 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017552.t1 | MTR_8g074120 | 91.348 | 497 | 8 | 1 | 67 | 528 | 20 | 516 | 0.0 | 933 |
| MS.gene017552.t1 | MTR_8g074040 | 76.814 | 565 | 94 | 2 | 1 | 528 | 43 | 607 | 0.0 | 901 |
| MS.gene017552.t1 | MTR_8g074040 | 73.824 | 489 | 91 | 2 | 77 | 528 | 1 | 489 | 0.0 | 746 |
| MS.gene017552.t1 | MTR_5g008800 | 58.514 | 552 | 192 | 2 | 1 | 517 | 1 | 550 | 0.0 | 681 |
| MS.gene017552.t1 | MTR_5g008820 | 57.353 | 544 | 193 | 3 | 1 | 509 | 1 | 540 | 0.0 | 672 |
| MS.gene017552.t1 | MTR_2g044180 | 48.901 | 546 | 233 | 5 | 9 | 508 | 15 | 560 | 0.0 | 537 |
| MS.gene017552.t1 | MTR_4g121600 | 47.187 | 551 | 237 | 6 | 9 | 509 | 15 | 561 | 0.0 | 529 |
| MS.gene017552.t1 | MTR_5g076240 | 47.653 | 554 | 241 | 8 | 1 | 509 | 1 | 550 | 0.0 | 523 |
| MS.gene017552.t1 | MTR_3g064420 | 45.405 | 555 | 252 | 6 | 1 | 506 | 1 | 553 | 4.73e-175 | 506 |
| MS.gene017552.t1 | MTR_5g076220 | 48.556 | 554 | 235 | 8 | 1 | 508 | 1 | 550 | 5.90e-171 | 495 |
| MS.gene017552.t1 | MTR_5g076200 | 48.663 | 561 | 232 | 10 | 1 | 512 | 1 | 554 | 1.09e-169 | 492 |
| MS.gene017552.t1 | MTR_0161s0050 | 49.376 | 561 | 230 | 10 | 1 | 512 | 1 | 556 | 1.70e-168 | 489 |
| MS.gene017552.t1 | MTR_5g023730 | 45.355 | 549 | 250 | 10 | 2 | 507 | 3 | 544 | 5.45e-155 | 454 |
| MS.gene017552.t1 | MTR_2g044180 | 47.548 | 469 | 200 | 5 | 86 | 508 | 1 | 469 | 9.25e-153 | 445 |
| MS.gene017552.t1 | MTR_0803s0020 | 29.529 | 552 | 323 | 11 | 5 | 510 | 226 | 757 | 3.21e-59 | 212 |
| MS.gene017552.t1 | MTR_1569s0010 | 27.407 | 540 | 314 | 16 | 24 | 500 | 4 | 528 | 3.50e-37 | 144 |
| MS.gene017552.t1 | MTR_8g039720 | 27.290 | 513 | 288 | 16 | 40 | 496 | 65 | 548 | 3.91e-37 | 144 |
| MS.gene017552.t1 | MTR_1g026310 | 24.900 | 502 | 314 | 10 | 39 | 496 | 67 | 549 | 5.82e-37 | 144 |
| MS.gene017552.t1 | MTR_2g105570 | 27.043 | 514 | 307 | 18 | 40 | 505 | 54 | 547 | 2.16e-35 | 139 |
| MS.gene017552.t1 | MTR_2g095510 | 24.818 | 548 | 319 | 16 | 14 | 505 | 27 | 537 | 2.31e-34 | 136 |
| MS.gene017552.t1 | MTR_3g035130 | 26.136 | 528 | 308 | 15 | 23 | 501 | 15 | 509 | 3.46e-34 | 135 |
| MS.gene017552.t1 | MTR_3g460770 | 24.206 | 504 | 296 | 18 | 51 | 502 | 67 | 536 | 1.85e-31 | 128 |
| MS.gene017552.t1 | MTR_4g057730 | 24.457 | 552 | 327 | 15 | 10 | 505 | 23 | 540 | 2.12e-31 | 128 |
| MS.gene017552.t1 | MTR_5g007640 | 26.079 | 533 | 307 | 19 | 29 | 505 | 84 | 585 | 2.10e-30 | 125 |
| MS.gene017552.t1 | MTR_4g077900 | 24.458 | 507 | 289 | 12 | 52 | 500 | 1 | 471 | 8.95e-30 | 122 |
| MS.gene017552.t1 | MTR_4g005750 | 24.609 | 512 | 316 | 13 | 40 | 505 | 53 | 540 | 2.07e-29 | 122 |
| MS.gene017552.t1 | MTR_5g027500 | 25.933 | 509 | 291 | 14 | 52 | 501 | 81 | 562 | 4.90e-29 | 121 |
| MS.gene017552.t1 | MTR_1g063120 | 27.216 | 485 | 286 | 18 | 60 | 496 | 76 | 541 | 5.05e-28 | 118 |
| MS.gene017552.t1 | MTR_3g088880 | 23.985 | 542 | 325 | 14 | 17 | 508 | 53 | 557 | 7.19e-28 | 117 |
| MS.gene017552.t1 | MTR_1g063110 | 26.972 | 545 | 301 | 22 | 14 | 496 | 28 | 537 | 8.19e-28 | 117 |
| MS.gene017552.t1 | MTR_1g090737 | 25.145 | 517 | 295 | 16 | 41 | 502 | 84 | 563 | 3.45e-27 | 115 |
| MS.gene017552.t1 | MTR_3g088870 | 24.037 | 545 | 324 | 16 | 17 | 508 | 52 | 559 | 5.11e-26 | 112 |
| MS.gene017552.t1 | MTR_1g073180 | 25.000 | 500 | 301 | 12 | 37 | 496 | 58 | 523 | 5.73e-26 | 112 |
| MS.gene017552.t1 | MTR_3g035130 | 25.678 | 479 | 275 | 13 | 23 | 453 | 15 | 460 | 9.92e-25 | 107 |
| MS.gene017552.t1 | MTR_5g027480 | 24.172 | 513 | 283 | 15 | 52 | 501 | 80 | 549 | 4.86e-23 | 103 |
| MS.gene017552.t1 | MTR_1g073180 | 24.335 | 489 | 297 | 11 | 37 | 486 | 80 | 534 | 1.23e-22 | 101 |
| MS.gene017552.t1 | MTR_4g128337 | 22.421 | 504 | 315 | 11 | 42 | 496 | 61 | 537 | 2.30e-22 | 100 |
| MS.gene017552.t1 | MTR_4g011790 | 25.879 | 398 | 212 | 14 | 170 | 499 | 209 | 591 | 4.75e-22 | 100 |
| MS.gene017552.t1 | MTR_4g011790 | 25.750 | 400 | 214 | 14 | 170 | 501 | 209 | 593 | 6.22e-22 | 99.8 |
| MS.gene017552.t1 | MTR_1054s0020 | 24.297 | 498 | 318 | 16 | 41 | 506 | 301 | 771 | 6.70e-22 | 100 |
| MS.gene017552.t1 | MTR_4g057730 | 23.651 | 482 | 279 | 13 | 10 | 436 | 23 | 470 | 1.84e-21 | 97.8 |
| MS.gene017552.t1 | MTR_4g011790 | 24.694 | 409 | 216 | 14 | 170 | 501 | 209 | 602 | 5.39e-21 | 97.1 |
| MS.gene017552.t1 | MTR_4g013210 | 25.978 | 358 | 205 | 12 | 180 | 501 | 66 | 399 | 5.11e-19 | 89.7 |
| MS.gene017552.t1 | MTR_4g013210 | 26.050 | 357 | 204 | 12 | 181 | 501 | 219 | 551 | 1.04e-18 | 89.7 |
| MS.gene017552.t1 | MTR_2g095510 | 23.333 | 450 | 253 | 15 | 14 | 408 | 27 | 439 | 1.14e-18 | 89.0 |
| MS.gene017552.t1 | MTR_2g030240 | 22.822 | 574 | 315 | 20 | 20 | 503 | 8 | 543 | 2.11e-17 | 85.5 |
| MS.gene017552.t1 | MTR_4g013210 | 25.193 | 389 | 208 | 14 | 181 | 501 | 67 | 440 | 1.75e-16 | 82.4 |
| MS.gene017552.t1 | MTR_7g084850 | 22.527 | 546 | 300 | 20 | 46 | 503 | 210 | 720 | 6.36e-16 | 81.3 |
| MS.gene017552.t1 | MTR_7g109830 | 29.565 | 230 | 142 | 8 | 215 | 435 | 329 | 547 | 4.46e-15 | 78.6 |
| MS.gene017552.t1 | MTR_5g009350 | 31.868 | 182 | 87 | 8 | 288 | 454 | 412 | 571 | 7.05e-14 | 74.7 |
| MS.gene017552.t1 | MTR_5g009350 | 29.614 | 233 | 118 | 10 | 226 | 437 | 344 | 551 | 7.53e-14 | 74.7 |
| MS.gene017552.t1 | MTR_1g034360 | 25.153 | 326 | 171 | 16 | 228 | 520 | 345 | 630 | 1.49e-13 | 73.9 |
| MS.gene017552.t1 | MTR_5g009350 | 33.766 | 154 | 70 | 6 | 288 | 430 | 412 | 544 | 1.64e-13 | 73.6 |
| MS.gene017552.t1 | MTR_5g009350 | 33.766 | 154 | 70 | 6 | 288 | 430 | 412 | 544 | 1.67e-13 | 73.6 |
| MS.gene017552.t1 | MTR_5g009360 | 33.117 | 154 | 71 | 6 | 288 | 430 | 286 | 418 | 3.27e-13 | 72.4 |
| MS.gene017552.t1 | MTR_2g030240 | 24.235 | 392 | 206 | 15 | 186 | 503 | 75 | 449 | 4.26e-13 | 72.0 |
| MS.gene017552.t1 | MTR_5g009360 | 33.117 | 154 | 71 | 6 | 288 | 430 | 412 | 544 | 4.68e-13 | 72.4 |
| MS.gene017552.t1 | MTR_4g068670 | 27.556 | 225 | 119 | 9 | 226 | 430 | 341 | 541 | 1.64e-12 | 70.5 |
| MS.gene017552.t1 | MTR_1g086600 | 25.843 | 267 | 166 | 9 | 267 | 523 | 412 | 656 | 1.97e-12 | 70.1 |
| MS.gene017552.t1 | MTR_4g013210 | 25.070 | 359 | 187 | 13 | 181 | 472 | 219 | 562 | 3.04e-12 | 69.3 |
| MS.gene017552.t1 | MTR_8g083170 | 29.508 | 183 | 103 | 7 | 268 | 438 | 457 | 625 | 8.12e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017552.t1 | AT2G17650 | 62.770 | 556 | 160 | 4 | 1 | 509 | 48 | 603 | 0.0 | 702 |
| MS.gene017552.t1 | AT1G20560 | 57.952 | 547 | 193 | 2 | 1 | 510 | 3 | 549 | 0.0 | 664 |
| MS.gene017552.t1 | AT1G20560 | 57.113 | 471 | 165 | 2 | 77 | 510 | 1 | 471 | 0.0 | 563 |
| MS.gene017552.t1 | AT5G16340 | 50.182 | 550 | 226 | 7 | 1 | 507 | 1 | 545 | 0.0 | 536 |
| MS.gene017552.t1 | AT5G16370 | 50.454 | 551 | 225 | 7 | 1 | 508 | 1 | 546 | 0.0 | 531 |
| MS.gene017552.t1 | AT3G16910 | 46.350 | 548 | 247 | 5 | 9 | 509 | 17 | 564 | 3.61e-177 | 511 |
| MS.gene017552.t1 | AT1G76290 | 47.349 | 547 | 243 | 5 | 1 | 509 | 1 | 540 | 9.32e-172 | 496 |
| MS.gene017552.t1 | AT1G66120 | 45.636 | 550 | 253 | 6 | 1 | 506 | 1 | 548 | 1.46e-171 | 497 |
| MS.gene017552.t1 | AT1G75960 | 47.541 | 549 | 240 | 7 | 1 | 506 | 1 | 544 | 5.19e-171 | 494 |
| MS.gene017552.t1 | AT1G21530 | 45.833 | 552 | 249 | 8 | 1 | 506 | 1 | 548 | 1.44e-167 | 486 |
| MS.gene017552.t1 | AT1G21540 | 46.486 | 555 | 242 | 10 | 1 | 506 | 1 | 549 | 3.76e-167 | 485 |
| MS.gene017552.t1 | AT1G21530 | 45.652 | 552 | 248 | 8 | 1 | 506 | 1 | 546 | 9.58e-166 | 481 |
| MS.gene017552.t1 | AT1G65880 | 43.548 | 558 | 261 | 6 | 1 | 506 | 1 | 556 | 6.59e-162 | 473 |
| MS.gene017552.t1 | AT1G77240 | 45.273 | 550 | 251 | 10 | 1 | 506 | 1 | 544 | 7.50e-162 | 471 |
| MS.gene017552.t1 | AT1G65890 | 43.750 | 560 | 256 | 7 | 1 | 506 | 1 | 555 | 9.94e-161 | 469 |
| MS.gene017552.t1 | AT1G68270 | 44.045 | 529 | 269 | 8 | 1 | 506 | 1 | 525 | 6.60e-150 | 440 |
| MS.gene017552.t1 | AT1G20500 | 26.915 | 483 | 277 | 12 | 58 | 493 | 83 | 536 | 1.29e-35 | 140 |
| MS.gene017552.t1 | AT1G20510 | 26.230 | 549 | 320 | 16 | 7 | 496 | 11 | 533 | 2.05e-33 | 134 |
| MS.gene017552.t1 | AT3G48990 | 25.898 | 529 | 317 | 14 | 19 | 501 | 9 | 508 | 2.79e-33 | 133 |
| MS.gene017552.t1 | AT3G21240 | 26.692 | 532 | 316 | 16 | 18 | 502 | 45 | 549 | 3.94e-33 | 133 |
| MS.gene017552.t1 | AT5G63380 | 26.190 | 504 | 289 | 15 | 41 | 496 | 79 | 547 | 2.22e-32 | 131 |
| MS.gene017552.t1 | AT4G05160 | 24.756 | 513 | 310 | 13 | 42 | 505 | 57 | 542 | 1.56e-31 | 128 |
| MS.gene017552.t1 | AT1G20480 | 24.544 | 493 | 301 | 10 | 51 | 496 | 86 | 554 | 4.48e-31 | 127 |
| MS.gene017552.t1 | AT1G62940 | 24.361 | 509 | 310 | 15 | 41 | 502 | 55 | 535 | 1.19e-29 | 122 |
| MS.gene017552.t1 | AT1G65060 | 23.475 | 541 | 339 | 13 | 10 | 502 | 46 | 559 | 1.99e-29 | 122 |
| MS.gene017552.t1 | AT3G21240 | 27.039 | 466 | 267 | 15 | 18 | 437 | 45 | 483 | 4.56e-27 | 114 |
| MS.gene017552.t1 | AT3G21240 | 27.039 | 466 | 267 | 15 | 18 | 437 | 45 | 483 | 4.56e-27 | 114 |
| MS.gene017552.t1 | AT5G38120 | 25.361 | 485 | 285 | 16 | 56 | 493 | 82 | 536 | 4.30e-26 | 112 |
| MS.gene017552.t1 | AT4G19010 | 22.817 | 504 | 294 | 14 | 59 | 506 | 93 | 557 | 5.93e-26 | 112 |
| MS.gene017552.t1 | AT1G20510 | 25.820 | 488 | 278 | 15 | 7 | 436 | 11 | 472 | 2.96e-25 | 109 |
| MS.gene017552.t1 | AT1G51680 | 24.376 | 521 | 306 | 17 | 40 | 502 | 66 | 556 | 1.63e-24 | 107 |
| MS.gene017552.t1 | AT5G38120 | 25.109 | 458 | 267 | 15 | 56 | 467 | 82 | 509 | 6.71e-23 | 102 |
| MS.gene017552.t1 | AT1G30520 | 24.735 | 566 | 313 | 21 | 20 | 502 | 13 | 548 | 2.64e-22 | 100 |
| MS.gene017552.t1 | AT1G30520 | 24.735 | 566 | 313 | 21 | 20 | 502 | 13 | 548 | 2.64e-22 | 100 |
| MS.gene017552.t1 | AT3G21230 | 30.909 | 220 | 136 | 5 | 293 | 508 | 362 | 569 | 3.07e-22 | 100 |
| MS.gene017552.t1 | AT1G51680 | 25.263 | 475 | 265 | 18 | 40 | 455 | 66 | 509 | 7.49e-22 | 99.4 |
| MS.gene017552.t1 | AT2G47240 | 27.976 | 336 | 183 | 16 | 215 | 523 | 270 | 573 | 1.26e-19 | 92.8 |
| MS.gene017552.t1 | AT2G47240 | 27.976 | 336 | 183 | 16 | 215 | 523 | 329 | 632 | 2.53e-19 | 92.0 |
| MS.gene017552.t1 | AT2G47240 | 27.976 | 336 | 183 | 16 | 215 | 523 | 329 | 632 | 2.53e-19 | 92.0 |
| MS.gene017552.t1 | AT2G47240 | 27.976 | 336 | 183 | 16 | 215 | 523 | 329 | 632 | 2.53e-19 | 92.0 |
| MS.gene017552.t1 | AT1G51680 | 25.052 | 479 | 265 | 18 | 18 | 437 | 47 | 490 | 4.61e-19 | 90.5 |
| MS.gene017552.t1 | AT1G20510 | 25.268 | 467 | 265 | 15 | 7 | 415 | 11 | 451 | 4.99e-19 | 90.5 |
| MS.gene017552.t1 | AT5G38120 | 24.590 | 427 | 246 | 15 | 56 | 436 | 82 | 478 | 3.95e-18 | 87.8 |
| MS.gene017552.t1 | AT5G38120 | 24.590 | 427 | 246 | 15 | 56 | 436 | 82 | 478 | 3.95e-18 | 87.8 |
| MS.gene017552.t1 | AT3G21230 | 31.795 | 195 | 114 | 6 | 293 | 480 | 362 | 544 | 7.11e-18 | 87.0 |
| MS.gene017552.t1 | AT1G65060 | 23.094 | 446 | 269 | 12 | 10 | 408 | 46 | 464 | 1.35e-17 | 86.3 |
| MS.gene017552.t1 | AT1G64400 | 33.523 | 176 | 95 | 8 | 267 | 436 | 391 | 550 | 8.12e-16 | 80.9 |
| MS.gene017552.t1 | AT4G11030 | 31.579 | 228 | 117 | 11 | 226 | 436 | 345 | 550 | 1.03e-15 | 80.9 |
| MS.gene017552.t1 | AT3G21230 | 34.459 | 148 | 82 | 4 | 293 | 437 | 362 | 497 | 8.59e-15 | 77.4 |
| MS.gene017552.t1 | AT5G36880 | 21.324 | 544 | 332 | 19 | 34 | 503 | 194 | 715 | 1.35e-13 | 73.9 |
| MS.gene017552.t1 | AT5G36880 | 21.324 | 544 | 332 | 19 | 34 | 503 | 144 | 665 | 1.45e-13 | 73.9 |
| MS.gene017552.t1 | AT5G36880 | 21.324 | 544 | 332 | 19 | 34 | 503 | 144 | 665 | 1.45e-13 | 73.9 |
| MS.gene017552.t1 | AT5G36880 | 21.324 | 544 | 332 | 19 | 34 | 503 | 144 | 665 | 1.45e-13 | 73.9 |
| MS.gene017552.t1 | AT5G36880 | 21.324 | 544 | 332 | 19 | 34 | 503 | 144 | 665 | 1.45e-13 | 73.9 |
| MS.gene017552.t1 | AT1G49430 | 30.814 | 172 | 105 | 6 | 267 | 435 | 391 | 551 | 1.93e-13 | 73.6 |
| MS.gene017552.t1 | AT4G23850 | 30.000 | 220 | 120 | 10 | 226 | 430 | 345 | 545 | 2.43e-13 | 73.2 |
Find 112 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGAACATCACTTGTTTA+TGG | 0.202985 | 8.3:+28647865 | MS.gene017552:CDS |
| AAGGCCTTGGGAAGCATTTC+TGG | 0.208212 | 8.3:+28650423 | MS.gene017552:CDS |
| TTCACGCCTTGATGCAAATA+TGG | 0.236806 | 8.3:+28649093 | MS.gene017552:CDS |
| TTTGTCACCTATCAACTTCT+TGG | 0.240894 | 8.3:+28647819 | MS.gene017552:CDS |
| ATGGTTCTTTGAAGTATAAT+TGG | 0.253303 | 8.3:+28647884 | MS.gene017552:CDS |
| GCTTCTTCTCTCTCCCAGTT+AGG | 0.257691 | 8.3:+28647937 | MS.gene017552:CDS |
| GAAGTGTAATTTATACTTAT+AGG | 0.260660 | 8.3:-28649361 | None:intergenic |
| CTTTCGATGATGGAAGAAAA+TGG | 0.270591 | 8.3:+28649748 | MS.gene017552:CDS |
| ATATTGTCAAATATGTTCTT+TGG | 0.291239 | 8.3:-28649586 | None:intergenic |
| TCAAATATGCACAAGGAGTT+TGG | 0.293728 | 8.3:-28650245 | None:intergenic |
| TTGGAACTAATATTTGTCTA+AGG | 0.307003 | 8.3:+28649554 | MS.gene017552:CDS |
| TGGTTCTTTGAAGTATAATT+GGG | 0.328576 | 8.3:+28647885 | MS.gene017552:CDS |
| TTGCTAGACCTGATGATCTA+TGG | 0.342123 | 8.3:+28650220 | MS.gene017552:CDS |
| AGATCGTTTGCCGCATTTCA+TGG | 0.346055 | 8.3:+28650320 | MS.gene017552:CDS |
| TTTAATATTACTCATATGTA+TGG | 0.350433 | 8.3:+28649772 | MS.gene017552:CDS |
| CTTCTTCTCTCTCCCAGTTA+GGG | 0.367339 | 8.3:+28647938 | MS.gene017552:CDS |
| CTCCACGAGAAATCCCTAAC+TGG | 0.368028 | 8.3:-28647951 | None:intergenic |
| TCATACATTGCAGGGACATT+AGG | 0.376737 | 8.3:-28649022 | None:intergenic |
| AGGGATTTCTCGTGGAGATA+TGG | 0.387671 | 8.3:+28647957 | MS.gene017552:CDS |
| GTTGGTGAGGTAATGTTTAG+AGG | 0.397931 | 8.3:+28649973 | MS.gene017552:CDS |
| ATAAGTATAAATTACACTTC+TGG | 0.398348 | 8.3:+28649364 | MS.gene017552:CDS |
| TTCAACAATGGATAGTGTTC+CGG | 0.403704 | 8.3:+28649936 | MS.gene017552:CDS |
| TGGGGAGTGGCAGCACAGTT+TGG | 0.407012 | 8.3:+28649535 | MS.gene017552:CDS |
| TCAATGATCATGACTAAAAT+CGG | 0.412285 | 8.3:-28649226 | None:intergenic |
| TTGCTTGTGAATGCTCCAAT+AGG | 0.413914 | 8.3:-28649123 | None:intergenic |
| GAGGGAGAAAGCCAAGGCCT+TGG | 0.414480 | 8.3:+28650410 | MS.gene017552:CDS |
| TAGCCATCCAGCGGTCTTAG+AGG | 0.414549 | 8.3:+28650188 | MS.gene017552:CDS |
| TGCTAGACCTGATGATCTAT+GGG | 0.429616 | 8.3:+28650221 | MS.gene017552:CDS |
| AAATATGGTTTCAGTCCTAT+TGG | 0.431796 | 8.3:+28649108 | MS.gene017552:CDS |
| AGAAATGCTTCCCAAGGCCT+TGG | 0.433824 | 8.3:-28650421 | None:intergenic |
| CATATTTGAAATTGAAAGAC+GGG | 0.434432 | 8.3:+28650259 | MS.gene017552:CDS |
| TGACTGAAGACAACTCCTTT+AGG | 0.442881 | 8.3:-28649400 | None:intergenic |
| ACACTTCTGGCACTACATCT+AGG | 0.454516 | 8.3:+28649377 | MS.gene017552:CDS |
| AGGGAGAAAGCCAAGGCCTT+GGG | 0.454712 | 8.3:+28650411 | MS.gene017552:CDS |
| GCTCTCTCCAAGAAGTTGAT+AGG | 0.457474 | 8.3:-28647826 | None:intergenic |
| TTGAAGGACATAATAGTATC+CGG | 0.458140 | 8.3:+28650123 | MS.gene017552:CDS |
| GTTTGGCCCCATAGATCATC+AGG | 0.467905 | 8.3:-28650228 | None:intergenic |
| ATGGATAGTGTTCCGGCTGA+TGG | 0.471080 | 8.3:+28649943 | MS.gene017552:CDS |
| CACAAGGTATCAGTGATAAC+CGG | 0.474826 | 8.3:+28649700 | MS.gene017552:CDS |
| AAATGCAGCTCATACATTGC+AGG | 0.475944 | 8.3:-28649031 | None:intergenic |
| AAGAAGCATTTAAAGATGGT+TGG | 0.479593 | 8.3:+28650040 | MS.gene017552:CDS |
| GATATGCCGAAAACTTCAAC+AGG | 0.480240 | 8.3:+28650366 | MS.gene017552:CDS |
| GCCACAGATCCTTTCGATGA+TGG | 0.483462 | 8.3:+28649738 | MS.gene017552:CDS |
| ACAGAAGAAGCATTTAAAGA+TGG | 0.493385 | 8.3:+28650036 | MS.gene017552:CDS |
| CGATGTTGCTCGAGGAGCAT+TGG | 0.495739 | 8.3:+28649174 | MS.gene017552:CDS |
| CTCACAGAAACATGTGGTGC+AGG | 0.497007 | 8.3:+28649796 | MS.gene017552:CDS |
| GAAAGGATCTGTGGCGGTGG+AGG | 0.498372 | 8.3:-28649730 | None:intergenic |
| CTTCTTGGAGAGAGCAGCAA+AGG | 0.504058 | 8.3:+28647834 | MS.gene017552:CDS |
| CAGAGAATGGCTCCAGCCAT+TGG | 0.516988 | 8.3:-28649061 | None:intergenic |
| CATTTCGCAGTACCAATGGC+TGG | 0.521714 | 8.3:+28649049 | MS.gene017552:CDS |
| TCCAGCGGTCTTAGAGGCTG+CGG | 0.522604 | 8.3:+28650194 | MS.gene017552:CDS |
| ATTCGCAATCATATTCAAAA+CGG | 0.524788 | 8.3:-28649647 | None:intergenic |
| GGCACTACATCTAGGCCTAA+AGG | 0.526937 | 8.3:+28649385 | MS.gene017552:CDS |
| ATACTATTATGTCCTTCAAC+CGG | 0.531022 | 8.3:-28650119 | None:intergenic |
| TATGATTGCGAATTCTACAT+TGG | 0.538281 | 8.3:+28649657 | MS.gene017552:CDS |
| ATCGAAAGGATCTGTGGCGG+TGG | 0.540215 | 8.3:-28649733 | None:intergenic |
| AAAGATGGTTGGTTTCATAG+TGG | 0.540389 | 8.3:+28650051 | MS.gene017552:CDS |
| TGAAGGACATAATAGTATCC+GGG | 0.542556 | 8.3:+28650124 | MS.gene017552:CDS |
| TGAATTAAGAGTACAGAGAA+TGG | 0.548168 | 8.3:-28649074 | None:intergenic |
| TTGTGCTTGGAGACCTGAGT+GGG | 0.556554 | 8.3:+28649825 | MS.gene017552:CDS |
| CTGAAACCATATTTGCATCA+AGG | 0.559164 | 8.3:-28649099 | None:intergenic |
| ACCGCAGCCTCTAAGACCGC+TGG | 0.562499 | 8.3:-28650195 | None:intergenic |
| CGAAATCAAAGACCGGTTGA+AGG | 0.562728 | 8.3:+28650107 | MS.gene017552:CDS |
| TGTCAAAGATCCTTCAACAA+TGG | 0.563228 | 8.3:+28649924 | MS.gene017552:CDS |
| TTGGTGCTTAGCTTGGGGAG+TGG | 0.567534 | 8.3:+28649522 | MS.gene017552:intron |
| GGCAAGGTGTACCACATGTA+GGG | 0.573061 | 8.3:+28649887 | MS.gene017552:CDS |
| TTGGTGAGGTAATGTTTAGA+GGG | 0.575529 | 8.3:+28649974 | MS.gene017552:CDS |
| GCATATTTGAAATTGAAAGA+CGG | 0.576277 | 8.3:+28650258 | MS.gene017552:CDS |
| AGGCAAGGTGTACCACATGT+AGG | 0.576963 | 8.3:+28649886 | MS.gene017552:CDS |
| TTCAATTTCAAATATGCACA+AGG | 0.580423 | 8.3:-28650252 | None:intergenic |
| TGTACCACATGTAGGGTTGG+AGG | 0.582743 | 8.3:+28649894 | MS.gene017552:CDS |
| TGGCGGTGGAGGAGAACCTC+CGG | 0.583239 | 8.3:-28649719 | None:intergenic |
| TAAGCATAAAGTAACATACA+TGG | 0.584854 | 8.3:+28649612 | MS.gene017552:CDS |
| GGATCATGGGAATCAATGGA+AGG | 0.598769 | 8.3:+28647766 | None:intergenic |
| GCTGCATTTCGCAGTACCAA+TGG | 0.599815 | 8.3:+28649045 | MS.gene017552:CDS |
| TCCCAGTTAGGGATTTCTCG+TGG | 0.600719 | 8.3:+28647949 | MS.gene017552:CDS |
| GGTTCTTTGAAGTATAATTG+GGG | 0.604503 | 8.3:+28647886 | MS.gene017552:CDS |
| AATGCAGCTCATACATTGCA+GGG | 0.604689 | 8.3:-28649030 | None:intergenic |
| ACAAAGGAACGGAATTTGCA+TGG | 0.607245 | 8.3:-28647801 | None:intergenic |
| GGAGGTAACATGTCCCACTC+AGG | 0.607903 | 8.3:-28649838 | None:intergenic |
| TCACAGAAACATGTGGTGCA+GGG | 0.609788 | 8.3:+28649797 | MS.gene017552:CDS |
| CAGCCTCTAAGACCGCTGGA+TGG | 0.610850 | 8.3:-28650191 | None:intergenic |
| AAGCATAAAGTAACATACAT+GGG | 0.612839 | 8.3:+28649613 | MS.gene017552:CDS |
| AGGGACATTAGGTGCTAGTG+TGG | 0.615984 | 8.3:-28649011 | None:intergenic |
| AGGTGTACCACATGTAGGGT+TGG | 0.618177 | 8.3:+28649891 | MS.gene017552:CDS |
| CTTGCTGTGAAACATTCTGA+TGG | 0.618855 | 8.3:+28650078 | MS.gene017552:CDS |
| TCCACGAGAAATCCCTAACT+GGG | 0.623064 | 8.3:-28647950 | None:intergenic |
| GAAGGACATAATAGTATCCG+GGG | 0.624035 | 8.3:+28650125 | MS.gene017552:CDS |
| AGAGGGAATACAATGATGAG+TGG | 0.624606 | 8.3:+28649991 | MS.gene017552:CDS |
| GGAACACTATCCATTGTTGA+AGG | 0.629347 | 8.3:-28649934 | None:intergenic |
| TTTGTGCTTGGAGACCTGAG+TGG | 0.630741 | 8.3:+28649824 | MS.gene017552:CDS |
| TCCATCATCGAAAGGATCTG+TGG | 0.631677 | 8.3:-28649739 | None:intergenic |
| GGGTCCAGAAATGCTTCCCA+AGG | 0.631850 | 8.3:-28650427 | None:intergenic |
| GTTGATAGGTGACAAAGGAA+CGG | 0.634958 | 8.3:-28647812 | None:intergenic |
| GTTACATCGAAATCAAAGAC+CGG | 0.638764 | 8.3:+28650100 | MS.gene017552:CDS |
| TAGAAAACTGCTCAATCACA+AGG | 0.640133 | 8.3:+28649684 | MS.gene017552:CDS |
| AAGAAGTTGATAGGTGACAA+AGG | 0.641447 | 8.3:-28647817 | None:intergenic |
| GCAATCATATTCAAAACGGT+AGG | 0.641843 | 8.3:-28649643 | None:intergenic |
| GATCATGGGAATCAATGGAA+GGG | 0.644377 | 8.3:+28647767 | None:intergenic |
| TCAAAGATAAAAGCTAGGCA+AGG | 0.649836 | 8.3:+28649871 | MS.gene017552:CDS |
| CAACTACTCGATGTTGCTCG+AGG | 0.650856 | 8.3:+28649166 | MS.gene017552:CDS |
| AGAAAACATCAGCTCAATCG+AGG | 0.662335 | 8.3:+28650149 | MS.gene017552:CDS |
| CTGCACCACATGTTTCTGTG+AGG | 0.679321 | 8.3:-28649795 | None:intergenic |
| ATCATCGAAAGGATCTGTGG+CGG | 0.687585 | 8.3:-28649736 | None:intergenic |
| CATAAAGTAACATACATGGG+AGG | 0.691585 | 8.3:+28649616 | MS.gene017552:CDS |
| AGTTCCTCCAACCCTACATG+TGG | 0.698807 | 8.3:-28649898 | None:intergenic |
| AAGGTATCAGTGATAACCGG+AGG | 0.715611 | 8.3:+28649703 | MS.gene017552:CDS |
| ATAGGATCTAATTCACTGTG+TGG | 0.721604 | 8.3:-28649343 | None:intergenic |
| GGAGTTGTCTTCAGTCACAG+AGG | 0.728325 | 8.3:+28649406 | MS.gene017552:CDS |
| GCTAGACCTGATGATCTATG+GGG | 0.730274 | 8.3:+28650222 | MS.gene017552:CDS |
| AAGGACATAATAGTATCCGG+GGG | 0.748378 | 8.3:+28650126 | MS.gene017552:CDS |
| TATGGCCTCACAGAAACATG+TGG | 0.762816 | 8.3:+28649790 | MS.gene017552:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACAATAAAAAAAATTAATA+TGG | - | chr8.3:28648146-28648165 | None:intergenic | 10.0% |
| !! | AAAATGTAACATAAATATGA+AGG | - | chr8.3:28648068-28648087 | None:intergenic | 15.0% |
| !! | TTTAATATTACTCATATGTA+TGG | + | chr8.3:28649772-28649791 | MS.gene017552:CDS | 15.0% |
| !!! | ACTTTATCTTTAATTTATGT+GGG | + | chr8.3:28648228-28648247 | MS.gene017552:intron | 15.0% |
| !!! | TACTTTATCTTTAATTTATG+TGG | + | chr8.3:28648227-28648246 | MS.gene017552:intron | 15.0% |
| !!! | TTTATCTTTGATTTTTCATT+AGG | - | chr8.3:28649862-28649881 | None:intergenic | 15.0% |
| !! | AAAAATCAAAGATAAAAGCT+AGG | + | chr8.3:28649866-28649885 | MS.gene017552:CDS | 20.0% |
| !! | AATGATAACTTGATCAATTA+TGG | - | chr8.3:28648754-28648773 | None:intergenic | 20.0% |
| !! | ATAAGTATAAATTACACTTC+TGG | + | chr8.3:28649364-28649383 | MS.gene017552:CDS | 20.0% |
| !! | ATAGTACAAAAGAAAAATAG+TGG | - | chr8.3:28648868-28648887 | None:intergenic | 20.0% |
| !! | ATATTGTCAAATATGTTCTT+TGG | - | chr8.3:28649589-28649608 | None:intergenic | 20.0% |
| !! | ATTGATCAAGTTATCATTTA+AGG | + | chr8.3:28648756-28648775 | MS.gene017552:intron | 20.0% |
| !! | GAAGTGTAATTTATACTTAT+AGG | - | chr8.3:28649364-28649383 | None:intergenic | 20.0% |
| !! | GTTAAAATCATATCTATACA+TGG | + | chr8.3:28648294-28648313 | MS.gene017552:intron | 20.0% |
| !! | TATGAAAAACTTATAGCTAT+TGG | + | chr8.3:28649295-28649314 | MS.gene017552:CDS | 20.0% |
| !!! | AACAATTATGCACATATTTT+TGG | - | chr8.3:28648571-28648590 | None:intergenic | 20.0% |
| !!! | AATAATGAAAAGATTTTCAC+TGG | + | chr8.3:28648531-28648550 | MS.gene017552:intron | 20.0% |
| !!! | ATAATGATTTTGATATTGTG+AGG | + | chr8.3:28649320-28649339 | MS.gene017552:CDS | 20.0% |
| !!! | ATTTTTCTTTTACAATCTAG+GGG | - | chr8.3:28650450-28650469 | None:intergenic | 20.0% |
| !!! | CATTTTTCTTTTACAATCTA+GGG | - | chr8.3:28650451-28650470 | None:intergenic | 20.0% |
| ! | AAGCATAAAGTAACATACAT+GGG | + | chr8.3:28649613-28649632 | MS.gene017552:CDS | 25.0% |
| ! | AGAGAGATAAAATGATAGTT+AGG | + | chr8.3:28648487-28648506 | MS.gene017552:intron | 25.0% |
| ! | ATAAGAATCATTCCAACTTT+AGG | - | chr8.3:28648331-28648350 | None:intergenic | 25.0% |
| ! | ATGAGTCTCTATTTATACAT+AGG | - | chr8.3:28648727-28648746 | None:intergenic | 25.0% |
| ! | ATTCGCAATCATATTCAAAA+CGG | - | chr8.3:28649650-28649669 | None:intergenic | 25.0% |
| ! | CCTAGATTGTAAAAGAAAAA+TGG | + | chr8.3:28650449-28650468 | MS.gene017552:CDS | 25.0% |
| ! | GAGAGATAAAATGATAGTTA+GGG | + | chr8.3:28648488-28648507 | MS.gene017552:intron | 25.0% |
| ! | TAAGCATAAAGTAACATACA+TGG | + | chr8.3:28649612-28649631 | MS.gene017552:CDS | 25.0% |
| ! | TCAATGATCATGACTAAAAT+CGG | - | chr8.3:28649229-28649248 | None:intergenic | 25.0% |
| ! | TGAAAATGAAGAAGATAACA+AGG | - | chr8.3:28648696-28648715 | None:intergenic | 25.0% |
| ! | TTAAGGTCATTTGTCTAATT+AGG | + | chr8.3:28648773-28648792 | MS.gene017552:intron | 25.0% |
| ! | TTCAATTTCAAATATGCACA+AGG | - | chr8.3:28650255-28650274 | None:intergenic | 25.0% |
| ! | TTGGAACTAATATTTGTCTA+AGG | + | chr8.3:28649554-28649573 | MS.gene017552:CDS | 25.0% |
| !! | CATATTTGAAATTGAAAGAC+GGG | + | chr8.3:28650259-28650278 | MS.gene017552:CDS | 25.0% |
| !! | GCATATTTGAAATTGAAAGA+CGG | + | chr8.3:28650258-28650277 | MS.gene017552:CDS | 25.0% |
| !! | TCTTGAAAAATGACTGTTTT+AGG | - | chr8.3:28650348-28650367 | None:intergenic | 25.0% |
| !!! | AGATACAAAAGTTTGTTTTG+AGG | + | chr8.3:28650391-28650410 | MS.gene017552:CDS | 25.0% |
| !!! | ATCTTTGATTTTTCATTAGG+AGG | - | chr8.3:28649859-28649878 | None:intergenic | 25.0% |
| !!! | ATGGTTCTTTGAAGTATAAT+TGG | + | chr8.3:28647884-28647903 | MS.gene017552:CDS | 25.0% |
| !!! | CCATTTTTCTTTTACAATCT+AGG | - | chr8.3:28650452-28650471 | None:intergenic | 25.0% |
| !!! | GATACAAAAGTTTGTTTTGA+GGG | + | chr8.3:28650392-28650411 | MS.gene017552:CDS | 25.0% |
| !!! | TCTTTTTTCACTATTGTGTT+TGG | + | chr8.3:28648095-28648114 | MS.gene017552:intron | 25.0% |
| !!! | TGGTTCTTTGAAGTATAATT+GGG | + | chr8.3:28647885-28647904 | MS.gene017552:CDS | 25.0% |
| AAAATCAGTTTGTAAGTGAG+AGG | + | chr8.3:28648179-28648198 | MS.gene017552:intron | 30.0% | |
| AAAATGATAGTTAGGGTCTT+AGG | + | chr8.3:28648495-28648514 | MS.gene017552:intron | 30.0% | |
| AAATATGGTTTCAGTCCTAT+TGG | + | chr8.3:28649108-28649127 | MS.gene017552:CDS | 30.0% | |
| AAATGATAGTTAGGGTCTTA+GGG | + | chr8.3:28648496-28648515 | MS.gene017552:intron | 30.0% | |
| AAGAAGATAACAAGGATAGT+AGG | - | chr8.3:28648688-28648707 | None:intergenic | 30.0% | |
| ATACTATTATGTCCTTCAAC+CGG | - | chr8.3:28650122-28650141 | None:intergenic | 30.0% | |
| CAACCATTAGCATGAAATAA+TGG | - | chr8.3:28649505-28649524 | None:intergenic | 30.0% | |
| CATTATTTCATGCTAATGGT+TGG | + | chr8.3:28649503-28649522 | MS.gene017552:intron | 30.0% | |
| GTTCCATTATTTCATGCTAA+TGG | + | chr8.3:28649499-28649518 | MS.gene017552:intron | 30.0% | |
| TATGATTGCGAATTCTACAT+TGG | + | chr8.3:28649657-28649676 | MS.gene017552:CDS | 30.0% | |
| TTGAAGGACATAATAGTATC+CGG | + | chr8.3:28650123-28650142 | MS.gene017552:CDS | 30.0% | |
| TTTATCTCTCTTCTTGACAA+TGG | - | chr8.3:28648478-28648497 | None:intergenic | 30.0% | |
| ! | ATCTTACCTGTTGAAGTTTT+CGG | - | chr8.3:28650375-28650394 | None:intergenic | 30.0% |
| ! | GGTGTTAAGTTTTCAGAAAT+TGG | + | chr8.3:28648818-28648837 | MS.gene017552:intron | 30.0% |
| ! | GTTTCATGTTGATTGTAAAC+AGG | + | chr8.3:28648985-28649004 | MS.gene017552:intron | 30.0% |
| ! | TAGGGTGATAGTAATGTTTT+AGG | + | chr8.3:28648034-28648053 | MS.gene017552:intron | 30.0% |
| ! | TGAATTAAGAGTACAGAGAA+TGG | - | chr8.3:28649077-28649096 | None:intergenic | 30.0% |
| ! | TTTTTCACTATTGTGTTTGG+TGG | + | chr8.3:28648098-28648117 | MS.gene017552:intron | 30.0% |
| !! | AAGAAGCATTTAAAGATGGT+TGG | + | chr8.3:28650040-28650059 | MS.gene017552:CDS | 30.0% |
| !! | ACAGAAGAAGCATTTAAAGA+TGG | + | chr8.3:28650036-28650055 | MS.gene017552:CDS | 30.0% |
| !! | GGTTCTTTGAAGTATAATTG+GGG | + | chr8.3:28647886-28647905 | MS.gene017552:CDS | 30.0% |
| !!! | GCACATATTTTTGGAAACAA+TGG | - | chr8.3:28648562-28648581 | None:intergenic | 30.0% |
| AGGTCATTTGTCTAATTAGG+TGG | + | chr8.3:28648776-28648795 | MS.gene017552:intron | 35.0% | |
| ATAGGATCTAATTCACTGTG+TGG | - | chr8.3:28649346-28649365 | None:intergenic | 35.0% | |
| CATAAAGTAACATACATGGG+AGG | + | chr8.3:28649616-28649635 | MS.gene017552:CDS | 35.0% | |
| CCAAAGATAAACAGGAAAGA+GGG | - | chr8.3:28649476-28649495 | None:intergenic | 35.0% | |
| CTATCACTGTTCTCACTTTA+GGG | + | chr8.3:28648016-28648035 | MS.gene017552:intron | 35.0% | |
| CTGAAACCATATTTGCATCA+AGG | - | chr8.3:28649102-28649121 | None:intergenic | 35.0% | |
| GACAGAACATCACTTGTTTA+TGG | + | chr8.3:28647865-28647884 | MS.gene017552:CDS | 35.0% | |
| GCAATCATATTCAAAACGGT+AGG | - | chr8.3:28649646-28649665 | None:intergenic | 35.0% | |
| GGAACATTCCAAAGATAAAC+AGG | - | chr8.3:28649484-28649503 | None:intergenic | 35.0% | |
| GTTACATCGAAATCAAAGAC+CGG | + | chr8.3:28650100-28650119 | MS.gene017552:CDS | 35.0% | |
| GTTCATGCAATTCCTAAAGT+TGG | + | chr8.3:28648316-28648335 | MS.gene017552:intron | 35.0% | |
| TAGAAAACTGCTCAATCACA+AGG | + | chr8.3:28649684-28649703 | MS.gene017552:CDS | 35.0% | |
| TCAAAGATAAAAGCTAGGCA+AGG | + | chr8.3:28649871-28649890 | MS.gene017552:CDS | 35.0% | |
| TCAAATATGCACAAGGAGTT+TGG | - | chr8.3:28650248-28650267 | None:intergenic | 35.0% | |
| TCATTTGTCTAATTAGGTGG+TGG | + | chr8.3:28648779-28648798 | MS.gene017552:intron | 35.0% | |
| TCCAAAGATAAACAGGAAAG+AGG | - | chr8.3:28649477-28649496 | None:intergenic | 35.0% | |
| TCTATCACTGTTCTCACTTT+AGG | + | chr8.3:28648015-28648034 | MS.gene017552:intron | 35.0% | |
| TGAAGGACATAATAGTATCC+GGG | + | chr8.3:28650124-28650143 | MS.gene017552:CDS | 35.0% | |
| TGTCAAAGATCCTTCAACAA+TGG | + | chr8.3:28649924-28649943 | MS.gene017552:CDS | 35.0% | |
| TTATCTAAACTCTCTCGCAA+CGG | + | chr8.3:28649432-28649451 | MS.gene017552:intron | 35.0% | |
| TTCAACAATGGATAGTGTTC+CGG | + | chr8.3:28649936-28649955 | MS.gene017552:CDS | 35.0% | |
| TTGGTGAGGTAATGTTTAGA+GGG | + | chr8.3:28649974-28649993 | MS.gene017552:CDS | 35.0% | |
| TTTGTCACCTATCAACTTCT+TGG | + | chr8.3:28647819-28647838 | MS.gene017552:CDS | 35.0% | |
| ! | CATTTTCTTCCATCATCGAA+AGG | - | chr8.3:28649750-28649769 | None:intergenic | 35.0% |
| ! | GTGATTGAGCAGTTTTCTAT+CGG | - | chr8.3:28649683-28649702 | None:intergenic | 35.0% |
| !! | AAAGATGGTTGGTTTCATAG+TGG | + | chr8.3:28650051-28650070 | MS.gene017552:CDS | 35.0% |
| !! | AAGAAGTTGATAGGTGACAA+AGG | - | chr8.3:28647820-28647839 | None:intergenic | 35.0% |
| !! | CTTTCGATGATGGAAGAAAA+TGG | + | chr8.3:28649748-28649767 | MS.gene017552:CDS | 35.0% |
| AAATGCAGCTCATACATTGC+AGG | - | chr8.3:28649034-28649053 | None:intergenic | 40.0% | |
| AAGGACATAATAGTATCCGG+GGG | + | chr8.3:28650126-28650145 | MS.gene017552:CDS | 40.0% | |
| AATGCAGCTCATACATTGCA+GGG | - | chr8.3:28649033-28649052 | None:intergenic | 40.0% | |
| ACAAAGGAACGGAATTTGCA+TGG | - | chr8.3:28647804-28647823 | None:intergenic | 40.0% | |
| AGAAAACATCAGCTCAATCG+AGG | + | chr8.3:28650149-28650168 | MS.gene017552:CDS | 40.0% | |
| AGAGGGAATACAATGATGAG+TGG | + | chr8.3:28649991-28650010 | MS.gene017552:CDS | 40.0% | |
| CCCTCTTTCCTGTTTATCTT+TGG | + | chr8.3:28649473-28649492 | MS.gene017552:intron | 40.0% | |
| GAAGGACATAATAGTATCCG+GGG | + | chr8.3:28650125-28650144 | MS.gene017552:CDS | 40.0% | |
| GATATGCCGAAAACTTCAAC+AGG | + | chr8.3:28650366-28650385 | MS.gene017552:CDS | 40.0% | |
| GGAACACTATCCATTGTTGA+AGG | - | chr8.3:28649937-28649956 | None:intergenic | 40.0% | |
| TCATACATTGCAGGGACATT+AGG | - | chr8.3:28649025-28649044 | None:intergenic | 40.0% | |
| TGACTGAAGACAACTCCTTT+AGG | - | chr8.3:28649403-28649422 | None:intergenic | 40.0% | |
| TGCTAGACCTGATGATCTAT+GGG | + | chr8.3:28650221-28650240 | MS.gene017552:CDS | 40.0% | |
| TTCACGCCTTGATGCAAATA+TGG | + | chr8.3:28649093-28649112 | MS.gene017552:CDS | 40.0% | |
| TTGCTAGACCTGATGATCTA+TGG | + | chr8.3:28650220-28650239 | MS.gene017552:CDS | 40.0% | |
| TTGCTTGTGAATGCTCCAAT+AGG | - | chr8.3:28649126-28649145 | None:intergenic | 40.0% | |
| ! | CACAAGGTATCAGTGATAAC+CGG | + | chr8.3:28649700-28649719 | MS.gene017552:CDS | 40.0% |
| ! | CTTGCTGTGAAACATTCTGA+TGG | + | chr8.3:28650078-28650097 | MS.gene017552:CDS | 40.0% |
| ! | GTTGATAGGTGACAAAGGAA+CGG | - | chr8.3:28647815-28647834 | None:intergenic | 40.0% |
| ! | GTTGGTGAGGTAATGTTTAG+AGG | + | chr8.3:28649973-28649992 | MS.gene017552:CDS | 40.0% |
| ! | TAATGGTTGGTGCTTAGCTT+GGG | + | chr8.3:28649516-28649535 | MS.gene017552:intron | 40.0% |
| !! | AGTTTTGTATAGCCATCCAG+CGG | + | chr8.3:28650179-28650198 | MS.gene017552:CDS | 40.0% |
| !! | GGTGGTGATTGATTTTGCTA+GGG | + | chr8.3:28648797-28648816 | MS.gene017552:intron | 40.0% |
| !! | TGGTGGTGATTGATTTTGCT+AGG | + | chr8.3:28648796-28648815 | MS.gene017552:intron | 40.0% |
| !! | TTCTTTTCGCTCTTTTGGCT+AGG | - | chr8.3:28649204-28649223 | None:intergenic | 40.0% |
| !!! | GTTTTAGGAGCCATGAAATG+CGG | - | chr8.3:28650333-28650352 | None:intergenic | 40.0% |
| ACACTTCTGGCACTACATCT+AGG | + | chr8.3:28649377-28649396 | MS.gene017552:CDS | 45.0% | |
| AGATCGTTTGCCGCATTTCA+TGG | + | chr8.3:28650320-28650339 | MS.gene017552:CDS | 45.0% | |
| AGGGATTTCTCGTGGAGATA+TGG | + | chr8.3:28647957-28647976 | MS.gene017552:CDS | 45.0% | |
| ATCATCGAAAGGATCTGTGG+CGG | - | chr8.3:28649739-28649758 | None:intergenic | 45.0% | |
| CGAAATCAAAGACCGGTTGA+AGG | + | chr8.3:28650107-28650126 | MS.gene017552:CDS | 45.0% | |
| CTTCTTCTCTCTCCCAGTTA+GGG | + | chr8.3:28647938-28647957 | MS.gene017552:CDS | 45.0% | |
| GCTAGACCTGATGATCTATG+GGG | + | chr8.3:28650222-28650241 | MS.gene017552:CDS | 45.0% | |
| TATGGCCTCACAGAAACATG+TGG | + | chr8.3:28649790-28649809 | MS.gene017552:CDS | 45.0% | |
| TCACAGAAACATGTGGTGCA+GGG | + | chr8.3:28649797-28649816 | MS.gene017552:CDS | 45.0% | |
| TCCACGAGAAATCCCTAACT+GGG | - | chr8.3:28647953-28647972 | None:intergenic | 45.0% | |
| TCCATCATCGAAAGGATCTG+TGG | - | chr8.3:28649742-28649761 | None:intergenic | 45.0% | |
| TGTTCCGGCTGATGGAAAAA+CGG | + | chr8.3:28649951-28649970 | MS.gene017552:CDS | 45.0% | |
| ! | AAGGTATCAGTGATAACCGG+AGG | + | chr8.3:28649703-28649722 | MS.gene017552:CDS | 45.0% |
| ! | AATGGTTGGTGCTTAGCTTG+GGG | + | chr8.3:28649517-28649536 | MS.gene017552:intron | 45.0% |
| ! | CGGCTTTCTTTTCGCTCTTT+TGG | - | chr8.3:28649209-28649228 | None:intergenic | 45.0% |
| ! | CTAATGGTTGGTGCTTAGCT+TGG | + | chr8.3:28649515-28649534 | MS.gene017552:intron | 45.0% |
| ! | GCTCTCTCCAAGAAGTTGAT+AGG | - | chr8.3:28647829-28647848 | None:intergenic | 45.0% |
| ! | GGTATCAGAGCCTATCGATT+CGG | - | chr8.3:28648125-28648144 | None:intergenic | 45.0% |
| ! | TGATGGAAAAACGGTTGGTG+AGG | + | chr8.3:28649960-28649979 | MS.gene017552:CDS | 45.0% |
| !! | TTTTCGCTCTTTTGGCTAGG+AGG | - | chr8.3:28649201-28649220 | None:intergenic | 45.0% |
| !!! | TGTTTTGAGGGAGAAAGCCA+AGG | + | chr8.3:28650404-28650423 | MS.gene017552:CDS | 45.0% |
| AGAAATGCTTCCCAAGGCCT+TGG | - | chr8.3:28650424-28650443 | None:intergenic | 50.0% | |
| AGGCAAGGTGTACCACATGT+AGG | + | chr8.3:28649886-28649905 | MS.gene017552:CDS | 50.0% | |
| AGGGACATTAGGTGCTAGTG+TGG | - | chr8.3:28649014-28649033 | None:intergenic | 50.0% | |
| AGGTGTACCACATGTAGGGT+TGG | + | chr8.3:28649891-28649910 | MS.gene017552:CDS | 50.0% | |
| AGTGGCATCTCGAAACTGAG+CGG | - | chr8.3:28648850-28648869 | None:intergenic | 50.0% | |
| AGTTCCTCCAACCCTACATG+TGG | - | chr8.3:28649901-28649920 | None:intergenic | 50.0% | |
| ATGGATAGTGTTCCGGCTGA+TGG | + | chr8.3:28649943-28649962 | MS.gene017552:CDS | 50.0% | |
| CAACTACTCGATGTTGCTCG+AGG | + | chr8.3:28649166-28649185 | MS.gene017552:CDS | 50.0% | |
| CATTTCGCAGTACCAATGGC+TGG | + | chr8.3:28649049-28649068 | MS.gene017552:CDS | 50.0% | |
| CTCACAGAAACATGTGGTGC+AGG | + | chr8.3:28649796-28649815 | MS.gene017552:CDS | 50.0% | |
| CTCCACGAGAAATCCCTAAC+TGG | - | chr8.3:28647954-28647973 | None:intergenic | 50.0% | |
| CTTCTTGGAGAGAGCAGCAA+AGG | + | chr8.3:28647834-28647853 | MS.gene017552:CDS | 50.0% | |
| GCACTGTGAACTGTGCTTGT+TGG | + | chr8.3:28648922-28648941 | MS.gene017552:intron | 50.0% | |
| GCCACAGATCCTTTCGATGA+TGG | + | chr8.3:28649738-28649757 | MS.gene017552:CDS | 50.0% | |
| GCTGCATTTCGCAGTACCAA+TGG | + | chr8.3:28649045-28649064 | MS.gene017552:CDS | 50.0% | |
| GCTTCTTCTCTCTCCCAGTT+AGG | + | chr8.3:28647937-28647956 | MS.gene017552:CDS | 50.0% | |
| GGAGTTGTCTTCAGTCACAG+AGG | + | chr8.3:28649406-28649425 | MS.gene017552:CDS | 50.0% | |
| GGCAAGGTGTACCACATGTA+GGG | + | chr8.3:28649887-28649906 | MS.gene017552:CDS | 50.0% | |
| GGCACTACATCTAGGCCTAA+AGG | + | chr8.3:28649385-28649404 | MS.gene017552:CDS | 50.0% | |
| GTTTGGCCCCATAGATCATC+AGG | - | chr8.3:28650231-28650250 | None:intergenic | 50.0% | |
| TCCCAGTTAGGGATTTCTCG+TGG | + | chr8.3:28647949-28647968 | MS.gene017552:CDS | 50.0% | |
| TGTACCACATGTAGGGTTGG+AGG | + | chr8.3:28649894-28649913 | MS.gene017552:CDS | 50.0% | |
| TTGTGCTTGGAGACCTGAGT+GGG | + | chr8.3:28649825-28649844 | MS.gene017552:CDS | 50.0% | |
| TTTGTGCTTGGAGACCTGAG+TGG | + | chr8.3:28649824-28649843 | MS.gene017552:CDS | 50.0% | |
| ! | CTGCACCACATGTTTCTGTG+AGG | - | chr8.3:28649798-28649817 | None:intergenic | 50.0% |
| ! | GTGCAGGGACTTTTTGTGCT+TGG | + | chr8.3:28649812-28649831 | MS.gene017552:CDS | 50.0% |
| ! | GTTTGGTGGTCCGAATCGAT+AGG | + | chr8.3:28648112-28648131 | MS.gene017552:intron | 50.0% |
| ! | TGAGCTGATGTTTTCTCCCC+CGG | - | chr8.3:28650145-28650164 | None:intergenic | 50.0% |
| !! | AAGGCCTTGGGAAGCATTTC+TGG | + | chr8.3:28650423-28650442 | MS.gene017552:CDS | 50.0% |
| !! | CCAACCGTTTTTCCATCAGC+CGG | - | chr8.3:28649958-28649977 | None:intergenic | 50.0% |
| !! | GTTGGCTTTGATGCTCAGCA+AGG | + | chr8.3:28648940-28648959 | MS.gene017552:intron | 50.0% |
| AGGGAGAAAGCCAAGGCCTT+GGG | + | chr8.3:28650411-28650430 | MS.gene017552:CDS | 55.0% | |
| ATCGAAAGGATCTGTGGCGG+TGG | - | chr8.3:28649736-28649755 | None:intergenic | 55.0% | |
| CAGAGAATGGCTCCAGCCAT+TGG | - | chr8.3:28649064-28649083 | None:intergenic | 55.0% | |
| CCGGCTGATGGAAAAACGGT+TGG | + | chr8.3:28649955-28649974 | MS.gene017552:CDS | 55.0% | |
| GGAGGTAACATGTCCCACTC+AGG | - | chr8.3:28649841-28649860 | None:intergenic | 55.0% | |
| GGGTCCAGAAATGCTTCCCA+AGG | - | chr8.3:28650430-28650449 | None:intergenic | 55.0% | |
| TAGCCATCCAGCGGTCTTAG+AGG | + | chr8.3:28650188-28650207 | MS.gene017552:CDS | 55.0% | |
| ! | CGATGTTGCTCGAGGAGCAT+TGG | + | chr8.3:28649174-28649193 | MS.gene017552:CDS | 55.0% |
| ! | TTGGTGCTTAGCTTGGGGAG+TGG | + | chr8.3:28649522-28649541 | MS.gene017552:intron | 55.0% |
| GAAAGGATCTGTGGCGGTGG+AGG | - | chr8.3:28649733-28649752 | None:intergenic | 60.0% | |
| GAGGGAGAAAGCCAAGGCCT+TGG | + | chr8.3:28650410-28650429 | MS.gene017552:CDS | 60.0% | |
| TCCAGCGGTCTTAGAGGCTG+CGG | + | chr8.3:28650194-28650213 | MS.gene017552:CDS | 60.0% | |
| TGGGGAGTGGCAGCACAGTT+TGG | + | chr8.3:28649535-28649554 | MS.gene017552:CDS | 60.0% | |
| !! | CAGCCTCTAAGACCGCTGGA+TGG | - | chr8.3:28650194-28650213 | None:intergenic | 60.0% |
| TGGCGGTGGAGGAGAACCTC+CGG | - | chr8.3:28649722-28649741 | None:intergenic | 65.0% | |
| !! | ACCGCAGCCTCTAAGACCGC+TGG | - | chr8.3:28650198-28650217 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 28647781 | 28650500 | 28647781 | ID=MS.gene017552 |
| chr8.3 | mRNA | 28647781 | 28650500 | 28647781 | ID=MS.gene017552.t1;Parent=MS.gene017552 |
| chr8.3 | exon | 28647781 | 28647978 | 28647781 | ID=MS.gene017552.t1.exon1;Parent=MS.gene017552.t1 |
| chr8.3 | CDS | 28647781 | 28647978 | 28647781 | ID=cds.MS.gene017552.t1;Parent=MS.gene017552.t1 |
| chr8.3 | exon | 28649007 | 28649427 | 28649007 | ID=MS.gene017552.t1.exon2;Parent=MS.gene017552.t1 |
| chr8.3 | CDS | 28649007 | 28649427 | 28649007 | ID=cds.MS.gene017552.t1;Parent=MS.gene017552.t1 |
| chr8.3 | exon | 28649533 | 28650500 | 28649533 | ID=MS.gene017552.t1.exon3;Parent=MS.gene017552.t1 |
| chr8.3 | CDS | 28649533 | 28650500 | 28649533 | ID=cds.MS.gene017552.t1;Parent=MS.gene017552.t1 |
| Gene Sequence |
| Protein sequence |
