AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061175


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061175.t1 MTR_4g121600 98.233 566 10 0 2 567 1 566 0.0 1154
MS.gene061175.t1 MTR_2g044180 85.866 566 80 0 2 567 1 566 0.0 1031
MS.gene061175.t1 MTR_2g044180 86.105 475 66 0 93 567 1 475 0.0 863
MS.gene061175.t1 MTR_8g074040 50.622 563 267 4 3 565 38 589 0.0 606
MS.gene061175.t1 MTR_5g008800 52.269 551 250 4 16 566 9 546 0.0 596
MS.gene061175.t1 MTR_5g008820 47.292 554 277 3 13 566 6 544 0.0 575
MS.gene061175.t1 MTR_3g064420 51.434 558 256 8 8 557 1 551 0.0 571
MS.gene061175.t1 MTR_5g076240 48.404 564 270 8 8 563 1 551 0.0 543
MS.gene061175.t1 MTR_8g074120 51.318 493 221 5 74 562 20 497 0.0 535
MS.gene061175.t1 MTR_8g074040 51.452 482 223 4 84 565 1 471 0.0 534
MS.gene061175.t1 MTR_5g076200 46.691 559 286 7 8 562 1 551 5.34e-173 501
MS.gene061175.t1 MTR_5g076220 46.869 559 281 8 8 560 1 549 1.58e-172 500
MS.gene061175.t1 MTR_0161s0050 47.331 562 276 9 8 560 1 551 4.56e-168 489
MS.gene061175.t1 MTR_5g023730 42.143 560 301 10 6 560 3 544 4.32e-149 440
MS.gene061175.t1 MTR_0803s0020 27.955 533 338 12 26 548 240 736 6.33e-55 201
MS.gene061175.t1 MTR_8g039720 26.493 536 340 19 46 567 64 559 5.50e-39 150
MS.gene061175.t1 MTR_4g057730 25.939 559 354 20 17 557 23 539 5.14e-37 144
MS.gene061175.t1 MTR_2g095510 26.538 569 343 21 11 557 21 536 1.22e-36 143
MS.gene061175.t1 MTR_1g026310 24.151 530 358 12 46 567 67 560 1.29e-34 138
MS.gene061175.t1 MTR_1569s0010 29.282 362 231 11 200 554 186 529 1.90e-34 137
MS.gene061175.t1 MTR_3g460770 26.046 526 331 16 48 558 57 539 5.40e-34 136
MS.gene061175.t1 MTR_1g063110 30.370 405 250 16 175 567 167 551 4.50e-33 133
MS.gene061175.t1 MTR_4g005750 26.515 528 326 17 47 555 53 537 6.70e-33 132
MS.gene061175.t1 MTR_3g035130 23.389 543 369 14 19 552 3 507 1.89e-32 131
MS.gene061175.t1 MTR_5g027500 26.975 519 323 17 56 553 78 561 2.22e-32 131
MS.gene061175.t1 MTR_2g105570 26.226 530 331 19 47 555 54 544 6.72e-32 130
MS.gene061175.t1 MTR_5g027480 26.744 516 332 16 48 553 69 548 9.56e-32 129
MS.gene061175.t1 MTR_3g088880 25.237 527 319 20 46 552 77 548 3.86e-31 127
MS.gene061175.t1 MTR_4g077900 26.019 515 315 17 60 553 2 471 4.62e-31 126
MS.gene061175.t1 MTR_1g090737 26.790 377 246 11 191 557 207 563 3.28e-30 125
MS.gene061175.t1 MTR_3g088870 24.859 531 319 21 46 552 76 550 7.28e-29 121
MS.gene061175.t1 MTR_1g073180 25.806 527 313 18 46 552 59 527 7.52e-29 120
MS.gene061175.t1 MTR_5g007640 25.688 545 310 20 47 555 97 582 9.38e-29 120
MS.gene061175.t1 MTR_4g128337 26.071 537 345 17 37 558 47 546 5.56e-28 118
MS.gene061175.t1 MTR_1g063120 28.000 375 241 12 202 567 201 555 1.28e-27 117
MS.gene061175.t1 MTR_1586s0010 27.548 363 234 12 56 409 79 421 1.30e-27 115
MS.gene061175.t1 MTR_1054s0020 25.458 546 321 17 38 559 288 771 8.57e-27 115
MS.gene061175.t1 MTR_4g057730 24.742 485 311 18 17 484 23 470 4.71e-26 112
MS.gene061175.t1 MTR_3g035130 22.904 489 338 11 19 501 5 460 3.17e-25 109
MS.gene061175.t1 MTR_2g030240 22.140 542 376 13 41 556 22 543 7.78e-25 108
MS.gene061175.t1 MTR_1g073180 25.000 476 286 14 46 503 81 503 1.00e-24 108
MS.gene061175.t1 MTR_4g011790 27.368 380 228 16 202 553 233 592 2.00e-23 104
MS.gene061175.t1 MTR_4g068670 24.280 486 290 14 48 478 79 541 8.79e-23 103
MS.gene061175.t1 MTR_4g011790 27.297 381 229 16 202 554 233 593 1.91e-22 102
MS.gene061175.t1 MTR_2g030240 24.873 394 262 11 186 556 67 449 2.06e-22 100
MS.gene061175.t1 MTR_4g011790 26.509 381 239 13 202 553 233 601 4.93e-22 100
MS.gene061175.t1 MTR_4g057730 24.449 454 295 18 17 456 23 442 9.06e-22 98.6
MS.gene061175.t1 MTR_1g034360 23.156 488 294 12 48 478 80 543 2.02e-21 99.0
MS.gene061175.t1 MTR_2g095510 24.839 467 282 19 11 456 21 439 1.05e-20 95.5
MS.gene061175.t1 MTR_1g086600 22.833 600 340 19 48 559 100 664 1.23e-19 93.2
MS.gene061175.t1 MTR_7g109830 24.593 492 283 16 48 478 78 542 1.96e-18 89.4
MS.gene061175.t1 MTR_7g084850 25.871 402 253 14 187 564 352 732 3.07e-18 89.0
MS.gene061175.t1 MTR_4g013210 25.389 386 232 15 202 553 76 439 7.99e-18 86.7
MS.gene061175.t1 MTR_4g013210 29.560 159 104 4 403 553 240 398 9.67e-15 76.6
MS.gene061175.t1 MTR_4g013210 21.756 524 332 19 47 530 82 567 1.01e-14 77.4
MS.gene061175.t1 MTR_4g013210 29.560 159 104 4 403 553 392 550 1.17e-14 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061175.t1 AT3G16910 74.341 569 144 2 1 567 1 569 0.0 911
MS.gene061175.t1 AT2G17650 52.398 563 257 3 6 562 46 603 0.0 598
MS.gene061175.t1 AT1G20560 53.382 547 246 4 13 559 8 545 0.0 595
MS.gene061175.t1 AT5G16340 49.101 556 269 7 8 560 1 545 0.0 535
MS.gene061175.t1 AT5G16370 48.654 557 270 7 15 567 8 552 0.0 534
MS.gene061175.t1 AT1G65890 47.163 564 273 9 8 557 1 553 0.0 524
MS.gene061175.t1 AT1G20560 53.151 476 214 4 84 559 1 467 2.91e-179 514
MS.gene061175.t1 AT1G65880 45.633 561 287 6 8 557 1 554 3.55e-179 518
MS.gene061175.t1 AT1G21530 47.091 550 275 8 16 559 9 548 1.36e-178 515
MS.gene061175.t1 AT1G66120 46.536 563 275 8 8 559 1 548 2.12e-178 516
MS.gene061175.t1 AT1G21530 46.909 550 274 8 16 559 9 546 1.70e-176 510
MS.gene061175.t1 AT1G75960 47.387 555 278 6 8 559 1 544 3.32e-176 509
MS.gene061175.t1 AT1G21540 46.727 550 278 8 16 559 9 549 4.17e-174 504
MS.gene061175.t1 AT1G77240 46.545 550 278 7 14 559 7 544 5.48e-172 498
MS.gene061175.t1 AT1G76290 45.009 551 282 8 13 560 6 538 2.66e-162 474
MS.gene061175.t1 AT1G68270 40.320 563 283 9 8 557 1 523 2.54e-141 420
MS.gene061175.t1 AT3G48990 27.154 534 346 14 26 552 9 506 7.87e-40 152
MS.gene061175.t1 AT3G21240 26.376 527 329 18 47 555 64 549 4.87e-37 145
MS.gene061175.t1 AT1G62940 28.544 522 318 18 48 555 55 535 6.47e-37 144
MS.gene061175.t1 AT4G05160 26.344 558 363 18 11 557 21 541 2.10e-36 143
MS.gene061175.t1 AT1G20510 25.326 537 351 16 30 553 39 538 3.70e-35 139
MS.gene061175.t1 AT5G63380 25.819 519 328 16 46 552 77 550 7.16e-34 136
MS.gene061175.t1 AT3G21230 27.788 529 329 16 48 559 75 567 4.37e-31 127
MS.gene061175.t1 AT4G19010 25.752 532 316 18 50 553 75 555 7.02e-30 124
MS.gene061175.t1 AT1G20500 24.482 531 345 17 48 567 65 550 2.68e-29 122
MS.gene061175.t1 AT1G65060 25.430 523 337 15 47 555 76 559 3.62e-29 122
MS.gene061175.t1 AT3G21240 25.275 455 289 15 47 485 64 483 9.93e-29 120
MS.gene061175.t1 AT3G21240 25.275 455 289 15 47 485 64 483 9.93e-29 120
MS.gene061175.t1 AT1G51680 25.824 546 337 18 36 555 53 556 6.97e-28 118
MS.gene061175.t1 AT1G20510 24.893 466 307 13 30 484 39 472 1.90e-27 116
MS.gene061175.t1 AT1G20480 23.473 524 343 12 58 567 86 565 2.12e-27 117
MS.gene061175.t1 AT3G21230 27.869 488 299 15 48 519 75 525 8.82e-27 114
MS.gene061175.t1 AT1G51680 25.737 509 310 17 36 519 53 518 6.69e-24 105
MS.gene061175.t1 AT1G20510 24.886 438 286 13 30 456 39 444 1.93e-23 103
MS.gene061175.t1 AT5G38120 25.641 507 313 22 66 553 83 544 2.14e-23 104
MS.gene061175.t1 AT3G21230 27.093 454 284 14 48 485 75 497 1.54e-22 101
MS.gene061175.t1 AT5G38120 25.636 472 291 20 66 519 83 512 8.29e-21 96.3
MS.gene061175.t1 AT5G36880 23.077 559 358 17 48 564 149 677 6.54e-20 94.4
MS.gene061175.t1 AT5G36880 23.077 559 358 17 48 564 149 677 6.54e-20 94.4
MS.gene061175.t1 AT5G36880 23.077 559 358 17 48 564 149 677 6.54e-20 94.4
MS.gene061175.t1 AT5G36880 23.077 559 358 17 48 564 149 677 6.54e-20 94.4
MS.gene061175.t1 AT5G36880 23.077 559 358 17 48 564 199 727 9.80e-20 94.0
MS.gene061175.t1 AT1G51680 25.053 475 294 16 36 485 53 490 2.54e-19 91.7
MS.gene061175.t1 AT1G65060 24.466 421 275 12 47 456 76 464 1.11e-17 86.7
MS.gene061175.t1 AT3G16170 23.684 380 243 12 202 553 241 601 2.99e-17 85.5
MS.gene061175.t1 AT5G38120 24.828 435 272 18 66 484 83 478 1.32e-15 80.1
MS.gene061175.t1 AT5G38120 24.828 435 272 18 66 484 83 478 1.32e-15 80.1

Find 0 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTCTTAAATTATTAA+CGG - 32462:2352-2371 None:intergenic 10.0%
!! ATTATATTAATCAATGCATT+AGG - 32462:3391-3410 None:intergenic 15.0%
!! AAAAAATTCATCATCTACTA+CGG - 32462:2152-2171 None:intergenic 20.0%
!! TTAATTTCTATATATCCATC+TGG - 32462:4232-4251 None:intergenic 20.0%
!!! ATAATGTAATTTTCTTATGC+AGG + 32462:2531-2550 MS.gene061175:intron 20.0%
!!! TGATTAGAGAAAACATTTTT+CGG - 32462:1964-1983 None:intergenic 20.0%
! AGAAATTAAAGACAGATCAA+AGG + 32462:4243-4262 MS.gene061175:CDS 25.0%
! TAACTCAATAATTAATGCTC+CGG + 32462:3787-3806 MS.gene061175:CDS 25.0%
! TATTTAATTGCAATCAACCA+AGG + 32462:2089-2108 MS.gene061175:intron 25.0%
! TCACCAATGACAATTAAAAT+TGG - 32462:2781-2800 None:intergenic 25.0%
!! AAATGTTTTCTCTAATCAGA+TGG + 32462:1966-1985 MS.gene061175:intron 25.0%
!!! GTTTTTTTTCTTCCTTCATT+CGG + 32462:1919-1938 MS.gene061175:intron 25.0%
!!! TCTCCAATTTTAATTGTCAT+TGG + 32462:2775-2794 MS.gene061175:CDS 25.0%
AATCTGATTAAGAGAGATGA+TGG - 32462:2002-2021 None:intergenic 30.0%
AGGTAAAACTAATGTCTGAT+GGG + 32462:3139-3158 MS.gene061175:intron 30.0%
ATCTGATTAAGAGAGATGAT+GGG - 32462:2001-2020 None:intergenic 30.0%
GACAAAAAATCTATGAAGCA+CGG + 32462:2286-2305 MS.gene061175:intron 30.0%
GCATTTAGTCTAATATTCAC+AGG - 32462:2634-2653 None:intergenic 30.0%
TCTCTCATGAAACAATGATT+GGG + 32462:3494-3513 MS.gene061175:intron 30.0%
! AATTGGAGACTTGAATGTTT+TGG - 32462:2764-2783 None:intergenic 30.0%
! AGTCACTTTGTACTTAACAA+TGG - 32462:3741-3760 None:intergenic 30.0%
!! ATCTTTAGGTAGTTTGTTGT+TGG + 32462:3590-3609 MS.gene061175:intron 30.0%
!! CAGAAGAAGCATTGAAAATA+TGG + 32462:2728-2747 MS.gene061175:CDS 30.0%
!! TAAGAACCATAAAGGTGTTA+AGG - 32462:1742-1761 None:intergenic 30.0%
!! TTTGCTTGATGTTTTTATGC+AGG + 32462:3691-3710 MS.gene061175:intron 30.0%
AAAGATGACAGGATTAATCC+TGG - 32462:3576-3595 None:intergenic 35.0%
AAATCTATGAAGCACGGATA+CGG + 32462:2292-2311 MS.gene061175:intron 35.0%
AAGCGTTCAAATAAACGCAT+AGG - 32462:3178-3197 None:intergenic 35.0%
AATCACATCCCAGAAAATAG+TGG - 32462:3355-3374 None:intergenic 35.0%
AATGAAGAGAGCTTTGCAAA+TGG + 32462:4172-4191 MS.gene061175:CDS 35.0%
AATGCATATCGAAGTGACTT+AGG - 32462:2817-2836 None:intergenic 35.0%
ACAAACTACCTAAAGATGAC+AGG - 32462:3587-3606 None:intergenic 35.0%
ACACATCCTTAACACCTTTA+TGG + 32462:1733-1752 MS.gene061175:CDS 35.0%
ACCAAGAAGAAATGCTATTG+TGG - 32462:2659-2678 None:intergenic 35.0%
ATGAAGGAGCTGTATATCTT+TGG + 32462:3034-3053 MS.gene061175:CDS 35.0%
ATGCATATCGAAGTGACTTA+GGG - 32462:2816-2835 None:intergenic 35.0%
ATTATTGAGTTAAGCACCAC+TGG - 32462:3779-3798 None:intergenic 35.0%
CAACCATTGCAATGAAACAT+GGG - 32462:3066-3085 None:intergenic 35.0%
CAGGTAAAACTAATGTCTGA+TGG + 32462:3138-3157 MS.gene061175:intron 35.0%
CTCTCATGAAACAATGATTG+GGG + 32462:3495-3514 MS.gene061175:intron 35.0%
CTTATTTGGGGAATGAATGA+AGG + 32462:3018-3037 MS.gene061175:CDS 35.0%
GGATTAATCCTGTCATCTTT+AGG + 32462:3576-3595 MS.gene061175:intron 35.0%
GTATTCACATGTACAACATG+AGG - 32462:3836-3855 None:intergenic 35.0%
GTCTCTCATGAAACAATGAT+TGG + 32462:3493-3512 MS.gene061175:intron 35.0%
TCATAGAGAGCTGGAATATT+GGG - 32462:2571-2590 None:intergenic 35.0%
TCCACAATAGCATTTCTTCT+TGG + 32462:2655-2674 MS.gene061175:CDS 35.0%
TCTTAGTGGTGCACTTATTT+GGG + 32462:3005-3024 MS.gene061175:CDS 35.0%
TGAAAATATCAGCAGTGTAG+AGG + 32462:4285-4304 MS.gene061175:CDS 35.0%
TTCATAGAGAGCTGGAATAT+TGG - 32462:2572-2591 None:intergenic 35.0%
TTCGATATGCATTGAGCAAA+GGG + 32462:2824-2843 MS.gene061175:CDS 35.0%
! CGAACAAACCACTATTTTCT+GGG + 32462:3344-3363 MS.gene061175:intron 35.0%
! GCTCTTTCTAAGAACCATAA+AGG - 32462:1750-1769 None:intergenic 35.0%
! TCGAACAAACCACTATTTTC+TGG + 32462:3343-3362 MS.gene061175:intron 35.0%
! TTTTCTTCCTTCATTCGGTT+GGG + 32462:1924-1943 MS.gene061175:intron 35.0%
! TTTTTCTTCCTTCATTCGGT+TGG + 32462:1923-1942 MS.gene061175:intron 35.0%
!! AAACTAATGTCTGATGGGTT+TGG + 32462:3144-3163 MS.gene061175:intron 35.0%
!! AAGCTCTCTTCATTAGCTTT+AGG - 32462:4166-4185 None:intergenic 35.0%
!! AGCTCTCTTCATTAGCTTTA+GGG - 32462:4165-4184 None:intergenic 35.0%
!! TGACTTGTTATGCTTATCCA+GGG + 32462:3213-3232 MS.gene061175:intron 35.0%
!! TTGACTTGTTATGCTTATCC+AGG + 32462:3212-3231 MS.gene061175:intron 35.0%
!!! CATCAGACATTAGTTTTACC+TGG - 32462:3140-3159 None:intergenic 35.0%
AAATGAGCTTCATAGAGAGC+TGG - 32462:2580-2599 None:intergenic 40.0%
AACATGAGGTAGAGGAAGTA+TGG - 32462:3822-3841 None:intergenic 40.0%
AAGAGAGCTTTGCAAATGGA+TGG + 32462:4176-4195 MS.gene061175:CDS 40.0%
AATAATTAATGCTCCGGCTG+AGG + 32462:3793-3812 MS.gene061175:CDS 40.0%
AATTATATCGTGTCCGACAC+CGG + 32462:2385-2404 MS.gene061175:intron 40.0%
ACATGTACAACATGAGGTAG+AGG - 32462:3830-3849 None:intergenic 40.0%
ACCAGAAAATCCATCATCCA+TGG + 32462:1786-1805 MS.gene061175:CDS 40.0%
AGGATATACTGAAGTTCTGC+AGG + 32462:4449-4468 MS.gene061175:CDS 40.0%
AGGTACAGAAACATCTGTTG+AGG + 32462:4542-4561 MS.gene061175:CDS 40.0%
CACTGCATCAGTTGTAATTG+TGG + 32462:2684-2703 MS.gene061175:CDS 40.0%
CCAACCATTGCAATGAAACA+TGG - 32462:3067-3086 None:intergenic 40.0%
CCATGTTTCATTGCAATGGT+TGG + 32462:3064-3083 MS.gene061175:CDS 40.0%
CTACCCATGTTTCATTGCAA+TGG + 32462:3060-3079 MS.gene061175:CDS 40.0%
CTCTCTATGAAGCTCATTTC+GGG + 32462:2581-2600 MS.gene061175:CDS 40.0%
CTCTTAGTGGTGCACTTATT+TGG + 32462:3004-3023 MS.gene061175:CDS 40.0%
CTTAGTGGTGCACTTATTTG+GGG + 32462:3006-3025 MS.gene061175:CDS 40.0%
CTTCGATATGCATTGAGCAA+AGG + 32462:2823-2842 MS.gene061175:CDS 40.0%
GCAAATGGATGGTATCATTC+CGG + 32462:4187-4206 MS.gene061175:CDS 40.0%
GCATATCTCATGTCTCTTAG+TGG + 32462:2991-3010 MS.gene061175:CDS 40.0%
GCTCTCTATGAAGCTCATTT+CGG + 32462:2580-2599 MS.gene061175:CDS 40.0%
GGATATACTGAAGTTCTGCA+GGG + 32462:4450-4469 MS.gene061175:CDS 40.0%
GGATCAAGAGTTCTTTCCAT+TGG + 32462:2705-2724 MS.gene061175:CDS 40.0%
GGTACAGAAACATCTGTTGA+GGG + 32462:4543-4562 MS.gene061175:CDS 40.0%
GTGGCTTCCAATCGTATTTA+GGG - 32462:2885-2904 None:intergenic 40.0%
GTTAAGTACATTGCCTTGGA+AGG + 32462:4031-4050 MS.gene061175:CDS 40.0%
GTTGTACATGTGAATACTGC+TGG + 32462:3839-3858 MS.gene061175:CDS 40.0%
TACGAAGACTTTCTTCGAAG+TGG + 32462:2856-2875 MS.gene061175:CDS 40.0%
TCAAAGGACATCATCATCTC+AGG + 32462:4259-4278 MS.gene061175:CDS 40.0%
TCCTGCTATACTTGAGACAT+CGG + 32462:4330-4349 MS.gene061175:CDS 40.0%
TCGATATGCATTGAGCAAAG+GGG + 32462:2825-2844 MS.gene061175:CDS 40.0%
TTCAATGCTTCTTCTGCCAA+TGG - 32462:2724-2743 None:intergenic 40.0%
TTTCGTGTCACACACACTTA+CGG + 32462:3908-3927 MS.gene061175:CDS 40.0%
! CACTTGTGATACTTTTGACC+AGG + 32462:3555-3574 MS.gene061175:intron 40.0%
! TGATGCAAAACCACACCTTT+TGG - 32462:2964-2983 None:intergenic 40.0%
!! TGCTTATTGGGTACCGAAAT+CGG + 32462:4483-4502 MS.gene061175:CDS 40.0%
!!! CAGACATTAGTTTTACCTGG+CGG - 32462:3137-3156 None:intergenic 40.0%
!!! TCCATGGATGATGGATTTTC+TGG - 32462:1790-1809 None:intergenic 40.0%
!!! TGGATGATGGATTTTCTGGT+TGG - 32462:1786-1805 None:intergenic 40.0%
AAATCCTCGTTCAGACATGC+CGG - 32462:3891-3910 None:intergenic 45.0%
ACCGATGTCTCAAGTATAGC+AGG - 32462:4334-4353 None:intergenic 45.0%
ACTTAACCCCTTGTCTTGCA+TGG - 32462:4018-4037 None:intergenic 45.0%
AGCTCATTTCGGGATTCCAA+TGG + 32462:2591-2610 MS.gene061175:CDS 45.0%
AGGGGTTAAGTACATTGCCT+TGG + 32462:4027-4046 MS.gene061175:CDS 45.0%
ATGCTTTACCGCAAGATCAC+CGG - 32462:4209-4228 None:intergenic 45.0%
ATTATATCGTGTCCGACACC+GGG + 32462:2386-2405 MS.gene061175:intron 45.0%
ATTTCGGGATTCCAATGGCA+GGG + 32462:2596-2615 MS.gene061175:CDS 45.0%
CAATCAACCAAGGATGCTGA+CGG + 32462:2099-2118 MS.gene061175:intron 45.0%
CACACACACTTACGGTCTTT+CGG + 32462:3916-3935 MS.gene061175:CDS 45.0%
CCAGTAGCTGTCTTAGGTAA+CGG - 32462:4520-4539 None:intergenic 45.0%
CGTTACCTAAGACAGCTACT+GGG + 32462:4518-4537 MS.gene061175:CDS 45.0%
CTACTAACCCAACCGAATGA+AGG - 32462:1934-1953 None:intergenic 45.0%
GAAACATCTGTTGAGGGCTA+AGG + 32462:4549-4568 MS.gene061175:CDS 45.0%
GAGACATGAGATATGCTCCA+CGG - 32462:2987-3006 None:intergenic 45.0%
GATTTCGGTACCCAATAAGC+AGG - 32462:4484-4503 None:intergenic 45.0%
GGTGGCTTCCAATCGTATTT+AGG - 32462:2886-2905 None:intergenic 45.0%
GTACCGAAATCGGTTGTCTT+TGG + 32462:4493-4512 MS.gene061175:CDS 45.0%
GTATCATTCCGGTGATCTTG+CGG + 32462:4198-4217 MS.gene061175:CDS 45.0%
GTGGTGACCCTAAATACGAT+TGG + 32462:2875-2894 MS.gene061175:CDS 45.0%
GTTCTTAGAAAGAGCAGCTC+AGG + 32462:1755-1774 MS.gene061175:CDS 45.0%
TACCCAATAAGCAGGCATCT+TGG - 32462:4476-4495 None:intergenic 45.0%
TACGGTCTTTCGGAAACCTA+TGG + 32462:3926-3945 MS.gene061175:CDS 45.0%
TCGTTACTACTATCCACTCC+TGG - 32462:4415-4434 None:intergenic 45.0%
TCTTCGAATAAGCCATGTCC+CGG - 32462:2407-2426 None:intergenic 45.0%
TGCTATACTTGAGACATCGG+TGG + 32462:4333-4352 MS.gene061175:CDS 45.0%
TGGTTTCCAGGCACAATAGA+CGG - 32462:3957-3976 None:intergenic 45.0%
TTGATGCCAGGTGTAGTGAA+GGG - 32462:1814-1833 None:intergenic 45.0%
TTTAACGTCACGAACGCACA+CGG - 32462:4391-4410 None:intergenic 45.0%
TTTGATGCCAGGTGTAGTGA+AGG - 32462:1815-1834 None:intergenic 45.0%
! ATTGCTCTGGGTTACACATC+TGG + 32462:2925-2944 MS.gene061175:CDS 45.0%
! CGTGGTAATGCTGTCATGAA+AGG + 32462:4127-4146 MS.gene061175:CDS 45.0%
! GATCAAATTTTGCTACGCCC+TGG - 32462:3233-3252 None:intergenic 45.0%
! GCGTTGATAAGTTTGATGCC+AGG - 32462:1826-1845 None:intergenic 45.0%
! GGTCCAAAGACAACCGATTT+CGG - 32462:4499-4518 None:intergenic 45.0%
! TACAACTTGCTCGTCTTGAG+AGG - 32462:4589-4608 None:intergenic 45.0%
! TTTTCATCCGTCAGCATCCT+TGG - 32462:2109-2128 None:intergenic 45.0%
!! CTTCATTCGGTTGGGTTAGT+AGG + 32462:1932-1951 MS.gene061175:intron 45.0%
!! GCAATGGTTGGTGCTATACT+TGG + 32462:3076-3095 MS.gene061175:CDS 45.0%
!! TCATTTTTGTGCAGCACCAG+TGG + 32462:3760-3779 MS.gene061175:CDS 45.0%
!!! ACATTAGTTTTACCTGGCGG+AGG - 32462:3134-3153 None:intergenic 45.0%
AAAGAGCGGAAGCGAAACGA+CGG - 32462:1851-1870 None:intergenic 50.0%
AATAAGCCATGTCCCGGTGT+CGG - 32462:2401-2420 None:intergenic 50.0%
ACAATAGACGGATGGGCCAT+AGG - 32462:3945-3964 None:intergenic 50.0%
ACCTAAGACAGCTACTGGGA+AGG + 32462:4522-4541 MS.gene061175:CDS 50.0%
ACCTTCCCAGTAGCTGTCTT+AGG - 32462:4526-4545 None:intergenic 50.0%
AGACGACCTTCCAAAGAACG+CGG + 32462:1704-1723 MS.gene061175:CDS 50.0%
AGGGCTAAGGCAAAGGAGAT+GGG + 32462:4562-4581 MS.gene061175:CDS 50.0%
AGGTGTAGTGAAGGGATCCA+TGG - 32462:1806-1825 None:intergenic 50.0%
AGTTTGCCGCGTTCTTTGGA+AGG - 32462:1713-1732 None:intergenic 50.0%
ATACGATTGGAAGCCACCAG+AGG + 32462:2888-2907 MS.gene061175:CDS 50.0%
ATGCAACCTGTACCTGCTGA+CGG + 32462:4079-4098 MS.gene061175:CDS 50.0%
ATGCCGGAAAGAACAGAAGG+AGG - 32462:3875-3894 None:intergenic 50.0%
ATGGATCCCTTCACTACACC+TGG + 32462:1805-1824 MS.gene061175:CDS 50.0%
ATTGTGCCTGGAAACCAGAG+TGG + 32462:3960-3979 MS.gene061175:CDS 50.0%
CACAACATCCAAGCCTTCCA+AGG - 32462:4047-4066 None:intergenic 50.0%
CACTGCTAGTCCAAAAGGTG+TGG + 32462:2951-2970 MS.gene061175:CDS 50.0%
CATTTCGGGATTCCAATGGC+AGG + 32462:2595-2614 MS.gene061175:CDS 50.0%
CCGTTACCTAAGACAGCTAC+TGG + 32462:4517-4536 MS.gene061175:CDS 50.0%
CCTCCTCCTTCTGTTCTTTC+CGG + 32462:3869-3888 MS.gene061175:CDS 50.0%
CCTGCTGACGGTAAAACTGT+TGG + 32462:4091-4110 MS.gene061175:CDS 50.0%
CGCTAGACCAGACGAGAAAT+GGG + 32462:4357-4376 MS.gene061175:CDS 50.0%
GACATGCCGGAAAGAACAGA+AGG - 32462:3878-3897 None:intergenic 50.0%
GATGGAGTGGTTGGAAAGAG+CGG - 32462:1865-1884 None:intergenic 50.0%
GCTAGACCAGACGAGAAATG+GGG + 32462:4358-4377 MS.gene061175:CDS 50.0%
GCTCTTTCCAACCACTCCAT+CGG + 32462:1864-1883 MS.gene061175:CDS 50.0%
GGAACCACTGCTAGTCCAAA+AGG + 32462:2946-2965 MS.gene061175:CDS 50.0%
GGCCAAGATGCCTGCTTATT+GGG + 32462:4471-4490 MS.gene061175:CDS 50.0%
GTACATTGCCTTGGAAGGCT+TGG + 32462:4036-4055 MS.gene061175:CDS 50.0%
GTGAAGGGATCCATGGATGA+TGG - 32462:1799-1818 None:intergenic 50.0%
TACAGTGTTTCCGAGACCGA+TGG - 32462:1883-1902 None:intergenic 50.0%
TCCAGGCACAATAGACGGAT+GGG - 32462:3952-3971 None:intergenic 50.0%
TCGCTAGACCAGACGAGAAA+TGG + 32462:4356-4375 MS.gene061175:CDS 50.0%
TCTGTTGAGGGCTAAGGCAA+AGG + 32462:4555-4574 MS.gene061175:CDS 50.0%
TGGACACTTGCAGCTCTCTT+TGG + 32462:3096-3115 MS.gene061175:CDS 50.0%
TTCCAGGCACAATAGACGGA+TGG - 32462:3953-3972 None:intergenic 50.0%
TTGTGCCTGGAAACCAGAGT+GGG + 32462:3961-3980 MS.gene061175:CDS 50.0%
TTTATCACTGCCCCTGCCAT+TGG - 32462:2610-2629 None:intergenic 50.0%
TTTCGGGATTCCAATGGCAG+GGG + 32462:2597-2616 MS.gene061175:CDS 50.0%
! CCAACAGTTTTACCGTCAGC+AGG - 32462:4094-4113 None:intergenic 50.0%
! CTTGCGGTAAAGCATCCAGA+TGG + 32462:4214-4233 MS.gene061175:CDS 50.0%
! GGAAGTATGGTTTCCTCAGC+CGG - 32462:3809-3828 None:intergenic 50.0%
! GTGTAGTTTGCCGCGTTCTT+TGG - 32462:1717-1736 None:intergenic 50.0%
! GTTTTACCGTCAGCAGGTAC+AGG - 32462:4088-4107 None:intergenic 50.0%
!!! CACACCTTTTGGACTAGCAG+TGG - 32462:2953-2972 None:intergenic 50.0%
ATGCTCTGCCACTCATCCTC+TGG - 32462:2907-2926 None:intergenic 55.0%
CACAAACATATGCCTCCGCC+AGG + 32462:3119-3138 MS.gene061175:CDS 55.0%
CCGGAAAGAACAGAAGGAGG+AGG - 32462:3872-3891 None:intergenic 55.0%
CGTGACGTTAAAGCCAGGAG+TGG + 32462:4399-4418 MS.gene061175:CDS 55.0%
CTTTCCGGCATGTCTGAACG+AGG + 32462:3884-3903 MS.gene061175:CDS 55.0%
GAGGGCTAAGGCAAAGGAGA+TGG + 32462:4561-4580 MS.gene061175:CDS 55.0%
GCGTTCGTGACGTTAAAGCC+AGG + 32462:4394-4413 MS.gene061175:CDS 55.0%
GGGCCAAGATGCCTGCTTAT+TGG + 32462:4470-4489 MS.gene061175:CDS 55.0%
GGGCTAAGGCAAAGGAGATG+GGG + 32462:4563-4582 MS.gene061175:CDS 55.0%
GTTGGCGAAATCGTGATGCG+TGG + 32462:4109-4128 MS.gene061175:CDS 55.0%
TAACGAGCAGCGTCTAGTCG+AGG + 32462:4429-4448 MS.gene061175:CDS 55.0%
TCCAACCACTCCATCGGTCT+CGG + 32462:1870-1889 MS.gene061175:CDS 55.0%
TGTTTCCGAGACCGATGGAG+TGG - 32462:1878-1897 None:intergenic 55.0%
TTCCACCAGAATCTCGTGCC+CGG + 32462:3990-4009 MS.gene061175:CDS 55.0%
! TGAGTCCCACTCTGGTTTCC+AGG - 32462:3969-3988 None:intergenic 55.0%
!! GAGTGGCAGAGCATTGCTCT+GGG + 32462:2913-2932 MS.gene061175:CDS 55.0%
!! GGTGTGGTTTTGCATCACCG+TGG + 32462:2967-2986 MS.gene061175:CDS 55.0%
!! TGAGTGGCAGAGCATTGCTC+TGG + 32462:2912-2931 MS.gene061175:CDS 55.0%
CCCCTTGTCTTGCATGGAGC+CGG - 32462:4012-4031 None:intergenic 60.0%
CCCGGCTCCATGCAAGACAA+GGG + 32462:4008-4027 MS.gene061175:CDS 60.0%
CCCTTGTCTTGCATGGAGCC+GGG - 32462:4011-4030 None:intergenic 60.0%
CCGGCTCCATGCAAGACAAG+GGG + 32462:4009-4028 MS.gene061175:CDS 60.0%
CTCTGCCACTCATCCTCTGG+TGG - 32462:2904-2923 None:intergenic 60.0%
GACTCGCCCCATTTCTCGTC+TGG - 32462:4367-4386 None:intergenic 60.0%
GCCCATCCGTCTATTGTGCC+TGG + 32462:3948-3967 MS.gene061175:CDS 60.0%
GGAAGCCACCAGAGGATGAG+TGG + 32462:2896-2915 MS.gene061175:CDS 60.0%
GGTGGAAGTGAGTCCCACTC+TGG - 32462:3977-3996 None:intergenic 60.0%
TCCGAGACCGATGGAGTGGT+TGG - 32462:1874-1893 None:intergenic 60.0%
AGCCGGGCACGAGATTCTGG+TGG - 32462:3995-4014 None:intergenic 65.0%
GCCCGGCTCCATGCAAGACA+AGG + 32462:4007-4026 MS.gene061175:CDS 65.0%
TCGTGTCCGACACCGGGACA+TGG + 32462:2392-2411 MS.gene061175:intron 65.0%
TGGAGCCGGGCACGAGATTC+TGG - 32462:3998-4017 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
32462 gene 1681 4609 1681 ID=MS.gene061175
32462 mRNA 1681 4609 1681 ID=MS.gene061175.t1;Parent=MS.gene061175
32462 exon 1681 1899 1681 ID=MS.gene061175.t1.exon1;Parent=MS.gene061175.t1
32462 CDS 1681 1899 1681 ID=cds.MS.gene061175.t1;Parent=MS.gene061175.t1
32462 exon 2553 3140 2553 ID=MS.gene061175.t1.exon2;Parent=MS.gene061175.t1
32462 CDS 2553 3140 2553 ID=cds.MS.gene061175.t1;Parent=MS.gene061175.t1
32462 exon 3713 4609 3713 ID=MS.gene061175.t1.exon3;Parent=MS.gene061175.t1
32462 CDS 3713 4609 3713 ID=cds.MS.gene061175.t1;Parent=MS.gene061175.t1
Gene Sequence

>MS.gene061175

ATGATGGGTACGAAACAAGATATAGACGACCTTCCAAAGAACGCGGCAAACTACACATCCTTAACACCTTTATGGTTCTTAGAAAGAGCAGCTCAGGTTCATCCAACCAGAAAATCCATCATCCATGGATCCCTTCACTACACCTGGCATCAAACTTATCAACGCTGCCGTCGTTTCGCTTCCGCTCTTTCCAACCACTCCATCGGTCTCGGAAACACTGTAAGAACTTCGTATTTGAGTTTTTTTTCTTCCTTCATTCGGTTGGGTTAGTAGGATTGCTCCGAAAAATGTTTTCTCTAATCAGATGGATTATTGTTCCCATCATCTCTCTTAATCAGATTTGACTTATGTTTAATCGCTAATCTTAATTTGTCTTTTTTTAATAATAACGTTATTTCATGATAACTTTATTTAATTGCAATCAACCAAGGATGCTGACGGATGAAAATGAATGAACTTTTCTTTTTACCGTAGTAGATGATGAATTTTTTTAAGACACAGACAGTTTTTTATTTGAATTATTATTTTCGTCATCTAAAATTATACTATAAACTATATTCTGAAGTTTTTTAATTTTATAAACATTTTTATGTATGATACAAAATGACAAAAAATCTATGAAGCACGGATACGGACACGACACAGACACTAACACTAACACGCTGACACCGTTAATAATTTAAGAAAATCATATAATTCAATGTAATTATATCGTGTCCGACACCGGGACATGGCTTATTCGAAGAGTGTCTGTGCTTCATAGCAAAAAATAGTTTTCAATCATTCTCTACTCTAATTATGCGTTTAGCTTAATCATGTTCACTCTAATTCAGTTTTCAAGTACTAATTTATAATGTAATTTTCTTATGCAGGTAGCTGTTATTGCACCCAATATTCCAGCTCTCTATGAAGCTCATTTCGGGATTCCAATGGCAGGGGCAGTGATAAATCCTGTGAATATTAGACTAAATGCATCCACAATAGCATTTCTTCTTGGTCATTGCACTGCATCAGTTGTAATTGTGGATCAAGAGTTCTTTCCATTGGCAGAAGAAGCATTGAAAATATGGTCTGAGAAAACCAAAACATTCAAGTCTCCAATTTTAATTGTCATTGGTGATGAAAATTGCGACCCTAAGTCACTTCGATATGCATTGAGCAAAGGGGCAGTTGAATACGAAGACTTTCTTCGAAGTGGTGACCCTAAATACGATTGGAAGCCACCAGAGGATGAGTGGCAGAGCATTGCTCTGGGTTACACATCTGGAACCACTGCTAGTCCAAAAGGTGTGGTTTTGCATCACCGTGGAGCATATCTCATGTCTCTTAGTGGTGCACTTATTTGGGGAATGAATGAAGGAGCTGTATATCTTTGGACTCTACCCATGTTTCATTGCAATGGTTGGTGCTATACTTGGACACTTGCAGCTCTCTTTGGCACAAACATATGCCTCCGCCAGGTAAAACTAATGTCTGATGGGTTTGGTTTCTTTTCCTATGCGTTTATTTGAACGCTTTAAACAAATAGTTGTTGACTTGTTATGCTTATCCAGGGCGTAGCAAAATTTGATCAAACTACTATTGATTCGTGATACATGATTTAATACAAAGTGTTGTTAAATAGTTGTTGTAGCGTAGTAGAATTTGAAATGTGATATTGATTCGAACAAACCACTATTTTCTGGGATGTGATTGACAACATTGATACCTAATGCATTGATTAATATAATATTCTGCAAGTCTTGTTGATGATTTGTAATACATTAGCTTCAAGTTTGATGCTATTGTTAATGCTAATGCAATTTGTTGAATGTCTCTCATGAAACAATGATTGGGGTCTGTTTTAAAACAAATTGTTGCACGATTCAAACATACACTTGTGATACTTTTGACCAGGATTAATCCTGTCATCTTTAGGTAGTTTGTTGTTGGTTAACTAGTAATAACATGCTCTCTTGTTAACTAATATTGTTGTCTACTTTGTTGAGAGTTGTTTTCTTTAATAACTAGTTTGCTTGATGTTTTTATGCAGGTATCAGCAAAAGCAGTATATGAAGCCATTGTTAAGTACAAAGTGACTCATTTTTGTGCAGCACCAGTGGTGCTTAACTCAATAATTAATGCTCCGGCTGAGGAAACCATACTTCCTCTACCTCATGTTGTACATGTGAATACTGCTGGTGCTGCTCCTCCTCCTTCTGTTCTTTCCGGCATGTCTGAACGAGGATTTCGTGTCACACACACTTACGGTCTTTCGGAAACCTATGGCCCATCCGTCTATTGTGCCTGGAAACCAGAGTGGGACTCACTTCCACCAGAATCTCGTGCCCGGCTCCATGCAAGACAAGGGGTTAAGTACATTGCCTTGGAAGGCTTGGATGTTGTGAACACAAAAACTATGCAACCTGTACCTGCTGACGGTAAAACTGTTGGCGAAATCGTGATGCGTGGTAATGCTGTCATGAAAGGCTACTTAAAGAACCCTAAAGCTAATGAAGAGAGCTTTGCAAATGGATGGTATCATTCCGGTGATCTTGCGGTAAAGCATCCAGATGGATATATAGAAATTAAAGACAGATCAAAGGACATCATCATCTCAGGTGCTGAAAATATCAGCAGTGTAGAGGTAGAGAATGCTCTGTACTCGCATCCTGCTATACTTGAGACATCGGTGGTCGCTAGACCAGACGAGAAATGGGGCGAGTCTCCGTGTGCGTTCGTGACGTTAAAGCCAGGAGTGGATAGTAGTAACGAGCAGCGTCTAGTCGAGGATATACTGAAGTTCTGCAGGGCCAAGATGCCTGCTTATTGGGTACCGAAATCGGTTGTCTTTGGACCGTTACCTAAGACAGCTACTGGGAAGGTACAGAAACATCTGTTGAGGGCTAAGGCAAAGGAGATGGGGCCTCTCAAGACGAGCAAGTTGTAA

Protein sequence

>MS.gene061175.t1

MMGTKQDIDDLPKNAANYTSLTPLWFLERAAQVHPTRKSIIHGSLHYTWHQTYQRCRRFASALSNHSIGLGNTVAVIAPNIPALYEAHFGIPMAGAVINPVNIRLNASTIAFLLGHCTASVVIVDQEFFPLAEEALKIWSEKTKTFKSPILIVIGDENCDPKSLRYALSKGAVEYEDFLRSGDPKYDWKPPEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMNEGAVYLWTLPMFHCNGWCYTWTLAALFGTNICLRQVSAKAVYEAIVKYKVTHFCAAPVVLNSIINAPAEETILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWDSLPPESRARLHARQGVKYIALEGLDVVNTKTMQPVPADGKTVGEIVMRGNAVMKGYLKNPKANEESFANGWYHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEVENALYSHPAILETSVVARPDEKWGESPCAFVTLKPGVDSSNEQRLVEDILKFCRAKMPAYWVPKSVVFGPLPKTATGKVQKHLLRAKAKEMGPLKTSKL