Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21689.t1 | XP_003610948.1 | 96.5 | 488 | 16 | 1 | 1 | 487 | 1 | 488 | 3.20E-269 | 937.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21689.t1 | F4HUK6 | 60.0 | 493 | 190 | 2 | 1 | 486 | 3 | 495 | 7.3e-182 | 638.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21689.t1 | G7K981 | 96.5 | 488 | 16 | 1 | 1 | 487 | 1 | 488 | 2.3e-269 | 937.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene037815 | MS.gene21689 | PPI |
MS.gene34290 | MS.gene21689 | PPI |
MS.gene05028 | MS.gene21689 | PPI |
MS.gene009614 | MS.gene21689 | PPI |
MS.gene99857 | MS.gene21689 | PPI |
MS.gene21689 | MS.gene26216 | PPI |
MS.gene21689 | MS.gene27213 | PPI |
MS.gene008350 | MS.gene21689 | PPI |
MS.gene025344 | MS.gene21689 | PPI |
MS.gene21689 | MS.gene049681 | PPI |
MS.gene061175 | MS.gene21689 | PPI |
MS.gene037817 | MS.gene21689 | PPI |
MS.gene27218 | MS.gene21689 | PPI |
MS.gene99100 | MS.gene21689 | PPI |
MS.gene83513 | MS.gene21689 | PPI |
MS.gene017552 | MS.gene21689 | PPI |
MS.gene21689 | MS.gene061174 | PPI |
MS.gene21689 | MS.gene037813 | PPI |
MS.gene23788 | MS.gene21689 | PPI |
MS.gene041843 | MS.gene21689 | PPI |
MS.gene21689 | MS.gene017279 | PPI |
MS.gene23786 | MS.gene21689 | PPI |
MS.gene041844 | MS.gene21689 | PPI |
MS.gene21689 | MS.gene034275 | PPI |
MS.gene21689 | MS.gene98148 | PPI |
MS.gene21689 | MS.gene061578 | PPI |
MS.gene017547 | MS.gene21689 | PPI |
MS.gene23782 | MS.gene21689 | PPI |
MS.gene017545 | MS.gene21689 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21689.t1 | MTR_5g008820 | 96.926 | 488 | 14 | 1 | 1 | 487 | 1 | 488 | 0.0 | 988 |
MS.gene21689.t1 | MTR_5g008800 | 80.816 | 490 | 91 | 2 | 1 | 487 | 1 | 490 | 0.0 | 837 |
MS.gene21689.t1 | MTR_8g074040 | 60.606 | 495 | 188 | 3 | 1 | 489 | 43 | 536 | 0.0 | 670 |
MS.gene21689.t1 | MTR_8g074040 | 60.766 | 418 | 157 | 3 | 78 | 489 | 2 | 418 | 0.0 | 569 |
MS.gene21689.t1 | MTR_8g074120 | 60.563 | 426 | 163 | 2 | 67 | 487 | 20 | 445 | 0.0 | 566 |
MS.gene21689.t1 | MTR_2g044180 | 48.163 | 490 | 243 | 3 | 6 | 484 | 12 | 501 | 0.0 | 520 |
MS.gene21689.t1 | MTR_4g121600 | 48.577 | 492 | 242 | 3 | 6 | 486 | 12 | 503 | 0.0 | 519 |
MS.gene21689.t1 | MTR_5g076240 | 49.692 | 487 | 235 | 4 | 8 | 486 | 8 | 492 | 5.88e-173 | 499 |
MS.gene21689.t1 | MTR_3g064420 | 47.189 | 498 | 246 | 5 | 1 | 485 | 1 | 494 | 5.08e-170 | 492 |
MS.gene21689.t1 | MTR_5g023730 | 47.967 | 492 | 242 | 8 | 5 | 486 | 6 | 493 | 3.35e-160 | 466 |
MS.gene21689.t1 | MTR_5g076220 | 47.571 | 494 | 248 | 5 | 1 | 485 | 1 | 492 | 6.30e-155 | 452 |
MS.gene21689.t1 | MTR_5g076200 | 47.166 | 494 | 250 | 5 | 1 | 485 | 1 | 492 | 5.58e-154 | 450 |
MS.gene21689.t1 | MTR_0161s0050 | 48.185 | 496 | 244 | 4 | 1 | 485 | 1 | 494 | 5.67e-152 | 445 |
MS.gene21689.t1 | MTR_2g044180 | 48.049 | 410 | 202 | 3 | 86 | 484 | 1 | 410 | 3.30e-150 | 437 |
MS.gene21689.t1 | MTR_0803s0020 | 29.916 | 478 | 313 | 8 | 14 | 486 | 235 | 695 | 1.78e-54 | 197 |
MS.gene21689.t1 | MTR_2g095510 | 28.481 | 474 | 285 | 14 | 29 | 481 | 42 | 482 | 8.61e-39 | 148 |
MS.gene21689.t1 | MTR_2g105570 | 28.092 | 477 | 297 | 16 | 40 | 495 | 54 | 505 | 3.11e-38 | 147 |
MS.gene21689.t1 | MTR_5g007640 | 28.427 | 496 | 311 | 18 | 9 | 486 | 66 | 535 | 4.34e-38 | 147 |
MS.gene21689.t1 | MTR_8g039720 | 26.850 | 473 | 294 | 14 | 40 | 486 | 65 | 511 | 1.70e-36 | 142 |
MS.gene21689.t1 | MTR_1g026310 | 25.934 | 455 | 305 | 11 | 40 | 481 | 68 | 503 | 1.64e-33 | 134 |
MS.gene21689.t1 | MTR_4g057730 | 26.994 | 489 | 306 | 15 | 14 | 481 | 27 | 485 | 2.82e-33 | 132 |
MS.gene21689.t1 | MTR_3g460770 | 26.078 | 487 | 311 | 12 | 19 | 486 | 33 | 489 | 2.68e-32 | 130 |
MS.gene21689.t1 | MTR_4g077900 | 29.590 | 463 | 261 | 17 | 52 | 486 | 1 | 426 | 5.47e-32 | 128 |
MS.gene21689.t1 | MTR_1569s0010 | 25.304 | 494 | 323 | 11 | 22 | 484 | 3 | 481 | 6.72e-32 | 129 |
MS.gene21689.t1 | MTR_1g063110 | 26.749 | 486 | 316 | 14 | 14 | 481 | 28 | 491 | 9.20e-32 | 128 |
MS.gene21689.t1 | MTR_4g005750 | 28.355 | 462 | 291 | 15 | 40 | 486 | 53 | 489 | 1.51e-31 | 127 |
MS.gene21689.t1 | MTR_3g088880 | 29.201 | 363 | 219 | 10 | 138 | 486 | 166 | 504 | 5.61e-31 | 126 |
MS.gene21689.t1 | MTR_4g128337 | 26.639 | 488 | 295 | 18 | 27 | 486 | 44 | 496 | 1.11e-29 | 122 |
MS.gene21689.t1 | MTR_3g035130 | 26.471 | 476 | 295 | 14 | 28 | 483 | 20 | 460 | 6.50e-29 | 119 |
MS.gene21689.t1 | MTR_4g057730 | 26.371 | 474 | 298 | 15 | 14 | 466 | 27 | 470 | 6.82e-29 | 119 |
MS.gene21689.t1 | MTR_3g088870 | 28.972 | 321 | 202 | 8 | 179 | 486 | 199 | 506 | 8.11e-29 | 120 |
MS.gene21689.t1 | MTR_1g063120 | 26.061 | 495 | 312 | 18 | 14 | 481 | 28 | 495 | 2.67e-28 | 118 |
MS.gene21689.t1 | MTR_2g030240 | 25.956 | 497 | 317 | 13 | 20 | 487 | 8 | 482 | 5.71e-28 | 117 |
MS.gene21689.t1 | MTR_2g095510 | 27.610 | 431 | 258 | 14 | 29 | 438 | 42 | 439 | 1.16e-27 | 115 |
MS.gene21689.t1 | MTR_3g035130 | 26.458 | 480 | 296 | 16 | 28 | 486 | 20 | 463 | 7.23e-27 | 114 |
MS.gene21689.t1 | MTR_1g090737 | 26.638 | 473 | 303 | 17 | 37 | 495 | 80 | 522 | 1.47e-26 | 113 |
MS.gene21689.t1 | MTR_5g027480 | 27.473 | 455 | 279 | 14 | 52 | 486 | 80 | 503 | 2.32e-26 | 112 |
MS.gene21689.t1 | MTR_5g027500 | 27.802 | 464 | 278 | 17 | 52 | 486 | 81 | 516 | 1.77e-25 | 110 |
MS.gene21689.t1 | MTR_1586s0010 | 25.445 | 393 | 269 | 13 | 13 | 391 | 39 | 421 | 3.80e-25 | 107 |
MS.gene21689.t1 | MTR_1g073180 | 27.373 | 453 | 280 | 12 | 41 | 481 | 84 | 499 | 4.45e-25 | 108 |
MS.gene21689.t1 | MTR_1g073180 | 27.373 | 453 | 280 | 12 | 41 | 481 | 62 | 477 | 4.53e-25 | 108 |
MS.gene21689.t1 | MTR_4g057730 | 25.602 | 457 | 289 | 15 | 14 | 449 | 27 | 453 | 7.59e-24 | 104 |
MS.gene21689.t1 | MTR_2g030240 | 27.607 | 326 | 203 | 8 | 183 | 487 | 75 | 388 | 3.62e-22 | 99.4 |
MS.gene21689.t1 | MTR_1g086600 | 23.108 | 489 | 299 | 16 | 41 | 467 | 100 | 573 | 1.60e-21 | 98.6 |
MS.gene21689.t1 | MTR_7g109830 | 22.290 | 489 | 301 | 13 | 41 | 467 | 78 | 549 | 1.47e-20 | 95.5 |
MS.gene21689.t1 | MTR_4g011790 | 25.150 | 334 | 201 | 9 | 181 | 485 | 227 | 540 | 1.19e-15 | 80.1 |
MS.gene21689.t1 | MTR_4g011790 | 25.150 | 334 | 201 | 9 | 181 | 485 | 227 | 540 | 1.38e-15 | 79.7 |
MS.gene21689.t1 | MTR_8g099420 | 21.800 | 500 | 302 | 19 | 41 | 473 | 81 | 558 | 2.32e-15 | 79.3 |
MS.gene21689.t1 | MTR_5g009360 | 22.244 | 499 | 297 | 16 | 41 | 471 | 80 | 555 | 1.99e-14 | 76.3 |
MS.gene21689.t1 | MTR_1g026430 | 25.083 | 303 | 208 | 7 | 40 | 330 | 68 | 363 | 2.24e-14 | 75.5 |
MS.gene21689.t1 | MTR_5g009360 | 24.672 | 381 | 193 | 16 | 169 | 475 | 88 | 448 | 2.31e-14 | 75.9 |
MS.gene21689.t1 | MTR_5g009350 | 21.374 | 524 | 316 | 17 | 41 | 492 | 80 | 579 | 2.45e-14 | 75.9 |
MS.gene21689.t1 | MTR_1054s0020 | 38.235 | 102 | 63 | 0 | 385 | 486 | 616 | 717 | 3.00e-14 | 75.9 |
MS.gene21689.t1 | MTR_5g009350 | 21.643 | 499 | 300 | 16 | 41 | 471 | 80 | 555 | 5.29e-14 | 75.1 |
MS.gene21689.t1 | MTR_5g009350 | 21.643 | 499 | 300 | 16 | 41 | 471 | 80 | 555 | 6.24e-14 | 74.7 |
MS.gene21689.t1 | MTR_5g009350 | 21.311 | 488 | 293 | 15 | 41 | 460 | 80 | 544 | 9.30e-14 | 73.9 |
MS.gene21689.t1 | MTR_1g026470 | 25.083 | 303 | 208 | 7 | 40 | 330 | 68 | 363 | 1.05e-13 | 73.2 |
MS.gene21689.t1 | MTR_7g084850 | 24.554 | 505 | 291 | 21 | 37 | 486 | 200 | 669 | 2.52e-13 | 72.8 |
MS.gene21689.t1 | MTR_4g011790 | 36.893 | 103 | 63 | 2 | 385 | 485 | 447 | 549 | 1.18e-12 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21689.t1 | AT1G20560 | 62.677 | 493 | 177 | 2 | 1 | 486 | 3 | 495 | 0.0 | 684 |
MS.gene21689.t1 | AT2G17650 | 57.256 | 503 | 199 | 3 | 1 | 487 | 48 | 550 | 0.0 | 615 |
MS.gene21689.t1 | AT1G20560 | 61.928 | 415 | 151 | 2 | 79 | 486 | 3 | 417 | 0.0 | 571 |
MS.gene21689.t1 | AT1G76290 | 51.230 | 488 | 232 | 4 | 1 | 486 | 1 | 484 | 0.0 | 534 |
MS.gene21689.t1 | AT3G16910 | 47.976 | 494 | 245 | 3 | 6 | 487 | 14 | 507 | 0.0 | 519 |
MS.gene21689.t1 | AT5G16370 | 48.692 | 497 | 244 | 3 | 1 | 489 | 1 | 494 | 6.19e-173 | 498 |
MS.gene21689.t1 | AT5G16340 | 48.283 | 495 | 245 | 3 | 1 | 487 | 1 | 492 | 4.01e-170 | 491 |
MS.gene21689.t1 | AT1G65880 | 48.049 | 487 | 245 | 3 | 7 | 485 | 7 | 493 | 3.53e-169 | 489 |
MS.gene21689.t1 | AT1G66120 | 46.761 | 494 | 255 | 4 | 1 | 486 | 1 | 494 | 1.79e-166 | 483 |
MS.gene21689.t1 | AT1G65890 | 46.964 | 494 | 254 | 3 | 1 | 486 | 1 | 494 | 7.78e-165 | 479 |
MS.gene21689.t1 | AT1G75960 | 47.677 | 495 | 246 | 4 | 1 | 486 | 1 | 491 | 2.51e-164 | 476 |
MS.gene21689.t1 | AT1G77240 | 46.951 | 492 | 251 | 4 | 1 | 484 | 1 | 490 | 1.26e-162 | 472 |
MS.gene21689.t1 | AT1G21530 | 45.621 | 491 | 258 | 5 | 1 | 484 | 1 | 489 | 2.90e-157 | 458 |
MS.gene21689.t1 | AT1G21530 | 45.621 | 491 | 256 | 6 | 1 | 484 | 1 | 487 | 4.43e-155 | 452 |
MS.gene21689.t1 | AT1G21540 | 46.667 | 495 | 250 | 7 | 1 | 484 | 1 | 492 | 3.00e-154 | 451 |
MS.gene21689.t1 | AT1G68270 | 43.788 | 491 | 232 | 7 | 7 | 486 | 7 | 464 | 9.79e-138 | 408 |
MS.gene21689.t1 | AT4G05160 | 29.615 | 493 | 284 | 16 | 17 | 481 | 30 | 487 | 4.25e-42 | 157 |
MS.gene21689.t1 | AT1G65060 | 28.629 | 496 | 306 | 16 | 10 | 486 | 46 | 512 | 1.05e-38 | 148 |
MS.gene21689.t1 | AT1G20500 | 26.174 | 447 | 277 | 9 | 58 | 484 | 83 | 496 | 4.58e-35 | 138 |
MS.gene21689.t1 | AT1G20510 | 26.139 | 505 | 325 | 14 | 7 | 486 | 11 | 492 | 4.84e-35 | 138 |
MS.gene21689.t1 | AT3G21240 | 27.926 | 487 | 313 | 15 | 10 | 481 | 34 | 497 | 6.94e-34 | 135 |
MS.gene21689.t1 | AT5G63380 | 30.745 | 322 | 193 | 10 | 178 | 486 | 202 | 506 | 6.41e-32 | 129 |
MS.gene21689.t1 | AT1G20510 | 25.567 | 485 | 313 | 14 | 7 | 466 | 11 | 472 | 6.94e-31 | 125 |
MS.gene21689.t1 | AT3G21240 | 27.273 | 473 | 306 | 15 | 10 | 467 | 34 | 483 | 9.54e-30 | 122 |
MS.gene21689.t1 | AT3G21240 | 27.273 | 473 | 306 | 15 | 10 | 467 | 34 | 483 | 9.54e-30 | 122 |
MS.gene21689.t1 | AT1G65060 | 27.902 | 448 | 275 | 16 | 10 | 438 | 46 | 464 | 2.86e-29 | 120 |
MS.gene21689.t1 | AT1G30520 | 26.172 | 512 | 325 | 11 | 20 | 495 | 13 | 507 | 1.76e-28 | 119 |
MS.gene21689.t1 | AT1G30520 | 26.172 | 512 | 325 | 11 | 20 | 495 | 13 | 507 | 1.76e-28 | 119 |
MS.gene21689.t1 | AT4G19010 | 26.932 | 453 | 269 | 15 | 59 | 485 | 93 | 509 | 3.63e-28 | 118 |
MS.gene21689.t1 | AT3G21230 | 28.175 | 504 | 308 | 19 | 10 | 486 | 40 | 516 | 5.70e-28 | 117 |
MS.gene21689.t1 | AT3G21230 | 28.571 | 504 | 306 | 20 | 10 | 486 | 40 | 516 | 6.13e-28 | 117 |
MS.gene21689.t1 | AT3G48990 | 26.250 | 480 | 316 | 12 | 19 | 486 | 9 | 462 | 4.11e-26 | 111 |
MS.gene21689.t1 | AT1G20480 | 24.835 | 455 | 296 | 11 | 51 | 486 | 86 | 513 | 4.32e-26 | 112 |
MS.gene21689.t1 | AT1G51680 | 26.154 | 455 | 307 | 11 | 40 | 481 | 66 | 504 | 1.55e-25 | 110 |
MS.gene21689.t1 | AT1G51680 | 26.154 | 455 | 307 | 11 | 40 | 481 | 66 | 504 | 1.90e-25 | 110 |
MS.gene21689.t1 | AT1G20510 | 25.383 | 457 | 293 | 14 | 7 | 438 | 11 | 444 | 8.97e-25 | 107 |
MS.gene21689.t1 | AT1G62940 | 26.180 | 466 | 293 | 15 | 32 | 481 | 53 | 483 | 9.26e-24 | 105 |
MS.gene21689.t1 | AT3G21230 | 27.629 | 485 | 297 | 19 | 10 | 467 | 40 | 497 | 2.14e-23 | 103 |
MS.gene21689.t1 | AT1G64400 | 25.510 | 490 | 275 | 21 | 41 | 463 | 81 | 547 | 4.19e-23 | 103 |
MS.gene21689.t1 | AT2G47240 | 22.379 | 496 | 292 | 16 | 41 | 467 | 19 | 490 | 3.26e-22 | 100 |
MS.gene21689.t1 | AT2G47240 | 22.379 | 496 | 292 | 16 | 41 | 467 | 78 | 549 | 4.46e-22 | 100 |
MS.gene21689.t1 | AT2G47240 | 22.379 | 496 | 292 | 16 | 41 | 467 | 78 | 549 | 4.46e-22 | 100 |
MS.gene21689.t1 | AT2G47240 | 22.379 | 496 | 292 | 16 | 41 | 467 | 78 | 549 | 4.46e-22 | 100 |
MS.gene21689.t1 | AT5G38120 | 26.087 | 437 | 287 | 12 | 59 | 484 | 85 | 496 | 9.95e-22 | 98.6 |
MS.gene21689.t1 | AT5G38120 | 26.087 | 437 | 287 | 12 | 59 | 484 | 85 | 496 | 1.30e-21 | 98.6 |
MS.gene21689.t1 | AT1G51680 | 25.397 | 441 | 300 | 11 | 40 | 467 | 66 | 490 | 3.15e-21 | 97.1 |
MS.gene21689.t1 | AT1G30520 | 25.000 | 468 | 306 | 11 | 20 | 462 | 13 | 460 | 6.61e-21 | 95.9 |
MS.gene21689.t1 | AT1G30520 | 25.000 | 468 | 306 | 11 | 20 | 462 | 13 | 460 | 6.61e-21 | 95.9 |
MS.gene21689.t1 | AT5G38120 | 25.537 | 419 | 276 | 12 | 59 | 466 | 85 | 478 | 9.87e-18 | 86.3 |
MS.gene21689.t1 | AT5G38120 | 25.537 | 419 | 276 | 12 | 59 | 466 | 85 | 478 | 9.87e-18 | 86.3 |
MS.gene21689.t1 | AT4G23850 | 24.111 | 506 | 284 | 23 | 40 | 471 | 77 | 556 | 4.53e-17 | 84.7 |
MS.gene21689.t1 | AT3G16170 | 23.349 | 424 | 240 | 16 | 103 | 481 | 158 | 541 | 3.30e-16 | 82.0 |
MS.gene21689.t1 | AT1G20490 | 25.266 | 376 | 234 | 11 | 58 | 415 | 83 | 429 | 5.92e-16 | 80.5 |
MS.gene21689.t1 | AT1G20490 | 25.266 | 376 | 234 | 11 | 58 | 415 | 83 | 429 | 5.92e-16 | 80.5 |
MS.gene21689.t1 | AT4G11030 | 22.645 | 499 | 278 | 20 | 41 | 463 | 81 | 547 | 1.12e-15 | 80.5 |
MS.gene21689.t1 | AT5G36880 | 25.253 | 495 | 300 | 20 | 37 | 486 | 145 | 614 | 1.50e-15 | 80.1 |
MS.gene21689.t1 | AT5G36880 | 25.253 | 495 | 300 | 20 | 37 | 486 | 145 | 614 | 1.50e-15 | 80.1 |
MS.gene21689.t1 | AT5G36880 | 25.253 | 495 | 300 | 20 | 37 | 486 | 145 | 614 | 1.50e-15 | 80.1 |
MS.gene21689.t1 | AT5G36880 | 25.253 | 495 | 300 | 20 | 37 | 486 | 145 | 614 | 1.50e-15 | 80.1 |
MS.gene21689.t1 | AT5G36880 | 25.253 | 495 | 300 | 20 | 37 | 486 | 195 | 664 | 2.95e-15 | 79.0 |
MS.gene21689.t1 | AT3G05970 | 26.087 | 345 | 188 | 13 | 160 | 453 | 241 | 569 | 1.01e-14 | 77.4 |
MS.gene21689.t1 | AT5G36880 | 24.580 | 476 | 289 | 20 | 37 | 467 | 145 | 595 | 6.45e-13 | 71.6 |
MS.gene21689.t1 | AT2G04350 | 24.484 | 339 | 176 | 16 | 185 | 456 | 279 | 604 | 1.16e-11 | 67.8 |
MS.gene21689.t1 | AT2G04350 | 24.484 | 339 | 176 | 16 | 185 | 456 | 279 | 604 | 1.16e-11 | 67.8 |
Find 108 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCAATCTTGGTCTTAATTT+TGG | 0.071934 | 5.2:-2633613 | MS.gene21689:CDS |
AATCCACATCAGTGTATTTA+TGG | 0.185752 | 5.2:-2633374 | MS.gene21689:CDS |
CCAATTAGGAAGCCGCTTTC+CGG | 0.218229 | 5.2:-2633174 | MS.gene21689:CDS |
GCAACGGATGTCATCATATC+TGG | 0.261165 | 5.2:-2632730 | MS.gene21689:CDS |
CCGGAAAGCGGCTTCCTAAT+TGG | 0.277263 | 5.2:+2633174 | None:intergenic |
CCATTGGCGAGGTGATGTTT+AGG | 0.298783 | 5.2:-2632882 | MS.gene21689:CDS |
AGGTGCCTATCTTAATTCTT+TGG | 0.309813 | 5.2:-2633421 | MS.gene21689:CDS |
CATTTGAAGGTGGATGGTTT+AGG | 0.319117 | 5.2:-2632807 | MS.gene21689:CDS |
CTTTATCAGTTACATTTCTT+AGG | 0.319480 | 5.2:+2633277 | None:intergenic |
ATTTCAATAAGTTACACTTC+TGG | 0.328412 | 5.2:-2633483 | MS.gene21689:CDS |
CAATTAGGAAGCCGCTTTCC+GGG | 0.336345 | 5.2:-2633173 | MS.gene21689:CDS |
GGAGGCAGACTAGCCCATTC+TGG | 0.341215 | 5.2:+2633015 | None:intergenic |
CATTGGCGAGGTGATGTTTA+GGG | 0.346565 | 5.2:-2632881 | MS.gene21689:CDS |
TGGAAGACCAGATGAATATT+GGG | 0.347702 | 5.2:-2632632 | MS.gene21689:CDS |
ATTGTATCACATTCATCCTT+TGG | 0.349053 | 5.2:+2633504 | None:intergenic |
TGTTAATAAACTCACCAATT+AGG | 0.350899 | 5.2:-2633188 | MS.gene21689:CDS |
TCCAAAATTAAGACCAAGAT+TGG | 0.352456 | 5.2:+2633612 | None:intergenic |
TTGGAAGACCAGATGAATAT+TGG | 0.366717 | 5.2:-2632633 | MS.gene21689:CDS |
AACCACCAAGCTTCCAATCT+TGG | 0.367121 | 5.2:-2633625 | MS.gene21689:CDS |
CAGGATTTCAAGTGCTCCCT+TGG | 0.394701 | 5.2:+2633656 | None:intergenic |
GGTACACTCTTCATTGTAAC+AGG | 0.403802 | 5.2:+2632919 | None:intergenic |
AATTAAGATAGGCACCTCTA+TGG | 0.404175 | 5.2:+2633427 | None:intergenic |
GTCTCTCCCCAATATTCATC+TGG | 0.416068 | 5.2:+2632625 | None:intergenic |
ACTCATCACTACCACCTTCC+CGG | 0.421445 | 5.2:+2633155 | None:intergenic |
CAATTTGCTGTTCCAATGTC+AGG | 0.422908 | 5.2:-2633789 | MS.gene21689:CDS |
TAAGACCAAGATTGGAAGCT+TGG | 0.427579 | 5.2:+2633620 | None:intergenic |
GCTTCTTCAATTTCTCAACT+TGG | 0.437322 | 5.2:-2634463 | MS.gene21689:CDS |
CGTCAAGGAGTACAACATAT+TGG | 0.445906 | 5.2:-2632967 | MS.gene21689:CDS |
ATGAAATCATTGATGAATCT+TGG | 0.453430 | 5.2:+2633739 | None:intergenic |
ATTAACATGTTCAGAAGTGC+TGG | 0.458189 | 5.2:+2633204 | None:intergenic |
TATGGTATGACTGAAACTTA+TGG | 0.458394 | 5.2:-2633063 | MS.gene21689:CDS |
TGTAGCCAAAGAATTAAGAT+AGG | 0.462749 | 5.2:+2633416 | None:intergenic |
TTTGCACATGGAAGCCAGAA+TGG | 0.463902 | 5.2:-2633029 | MS.gene21689:CDS |
GAAGGTGGATGGTTTAGGAC+AGG | 0.472943 | 5.2:-2632802 | MS.gene21689:CDS |
CAACGGATGTCATCATATCT+GGG | 0.479486 | 5.2:-2632729 | MS.gene21689:CDS |
TTTGATGTAACCCATGCATA+TGG | 0.489151 | 5.2:-2633081 | MS.gene21689:CDS |
GTAACTTCTATGTAACCATC+AGG | 0.492554 | 5.2:+2632760 | None:intergenic |
TGGCTAAAGATTACACCCTT+AGG | 0.492741 | 5.2:+2633447 | None:intergenic |
CAGACGCGCAGGCGAAAATG+AGG | 0.493227 | 5.2:-2632993 | MS.gene21689:CDS |
AAACATTAGCACAATTCAGT+TGG | 0.497841 | 5.2:-2632701 | MS.gene21689:CDS |
TGGAACCACATCAACTCCTA+AGG | 0.502131 | 5.2:-2633463 | MS.gene21689:CDS |
TCATAGATCAATGTGTTATG+AGG | 0.509991 | 5.2:+2633570 | None:intergenic |
TATGAGAATCTTATAGCTGA+AGG | 0.512203 | 5.2:-2633552 | MS.gene21689:CDS |
AGGGGAAACAATGTGATGAA+TGG | 0.512604 | 5.2:-2632862 | MS.gene21689:CDS |
TGAATCTTGGTGAGTATTGA+GGG | 0.512848 | 5.2:+2633752 | None:intergenic |
GACCAAGATTGGAAGCTTGG+TGG | 0.518025 | 5.2:+2633623 | None:intergenic |
ATGAATCTTGGTGAGTATTG+AGG | 0.525920 | 5.2:+2633751 | None:intergenic |
CATCCATTGCAATGATACAT+TGG | 0.526775 | 5.2:+2633345 | None:intergenic |
TTCCATGTGCAAATTGAAGC+AGG | 0.527389 | 5.2:+2633039 | None:intergenic |
TTTCAGTCATACCATATGCA+TGG | 0.528602 | 5.2:+2633070 | None:intergenic |
GCAATGGATGGTGTGTCCCT+TGG | 0.532019 | 5.2:-2633332 | MS.gene21689:CDS |
TGGTGTTTCTCCTAATGATG+TGG | 0.533233 | 5.2:-2634443 | MS.gene21689:intron |
TTGCACATGGAAGCCAGAAT+GGG | 0.537134 | 5.2:-2633028 | MS.gene21689:CDS |
AAGATGCATTTGAAGGTGGA+TGG | 0.537805 | 5.2:-2632813 | MS.gene21689:CDS |
TTCAGTCATACCATATGCAT+GGG | 0.540222 | 5.2:+2633071 | None:intergenic |
TGGAGTTAGAGGAACATAGT+TGG | 0.543642 | 5.2:+2634594 | None:intergenic |
GCAACACAAGATGCATTTGA+AGG | 0.544220 | 5.2:-2632820 | MS.gene21689:CDS |
CAGAGAACAGCTCCTGACAT+TGG | 0.547240 | 5.2:+2633777 | None:intergenic |
AATTGTAGCTCATATGTGGC+TGG | 0.552082 | 5.2:+2633807 | None:intergenic |
ATTGGCGAGGTGATGTTTAG+GGG | 0.552478 | 5.2:-2632880 | MS.gene21689:CDS |
ATGGTTTAGGACAGGTGACA+TGG | 0.552609 | 5.2:-2632794 | MS.gene21689:CDS |
TCAATTACTTGATGTTGCCA+AGG | 0.554779 | 5.2:-2633673 | MS.gene21689:CDS |
TAGTCTGCCTCCAGACGCGC+AGG | 0.561404 | 5.2:-2633004 | MS.gene21689:CDS |
AGCAAATTGTAGCTCATATG+TGG | 0.563337 | 5.2:+2633803 | None:intergenic |
TAGGAAGCCGCTTTCCGGGA+AGG | 0.563903 | 5.2:-2633169 | MS.gene21689:CDS |
TACACCCTTAGGAGTTGATG+TGG | 0.571642 | 5.2:+2633458 | None:intergenic |
GACAAAGTCTCTATCATCTA+CGG | 0.573975 | 5.2:-2634535 | MS.gene21689:CDS |
CCTAAACATCACCTCGCCAA+TGG | 0.576396 | 5.2:+2632882 | None:intergenic |
ATCAATGTGTTATGAGGTGA+TGG | 0.579367 | 5.2:+2633576 | None:intergenic |
CAATTACTTGATGTTGCCAA+GGG | 0.580755 | 5.2:-2633672 | MS.gene21689:CDS |
ATTAGCACAATTCAGTTGGA+AGG | 0.582149 | 5.2:-2632697 | MS.gene21689:CDS |
CCTTGGAGTATTGCTGCTCA+AGG | 0.583323 | 5.2:-2633315 | MS.gene21689:CDS |
CAATGTATCATTGCAATGGA+TGG | 0.587801 | 5.2:-2633344 | MS.gene21689:CDS |
ATGAGAATCTTATAGCTGAA+GGG | 0.591680 | 5.2:-2633551 | MS.gene21689:CDS |
GCGAAAATGAGGGTGCGTCA+AGG | 0.597302 | 5.2:-2632982 | MS.gene21689:CDS |
TGTGATGAATGGATATCTCA+AGG | 0.600627 | 5.2:-2632851 | MS.gene21689:CDS |
ACAAGTTGAAAATATATGGA+GGG | 0.603759 | 5.2:-2634634 | None:intergenic |
ACACCATAAATACACTGATG+TGG | 0.604692 | 5.2:+2633371 | None:intergenic |
AACGGATGTCATCATATCTG+GGG | 0.608239 | 5.2:-2632728 | MS.gene21689:CDS |
GGAACCACATCAACTCCTAA+GGG | 0.608503 | 5.2:-2633462 | MS.gene21689:CDS |
GTTCCAATGTATCATTGCAA+TGG | 0.609007 | 5.2:-2633348 | MS.gene21689:CDS |
TGTTACAATGAAGAGTGTAC+CGG | 0.610654 | 5.2:-2632917 | MS.gene21689:CDS |
AGGAGTACAACATATTGGAA+TGG | 0.610916 | 5.2:-2632962 | MS.gene21689:CDS |
TTCAGTTTCACAAATGCACA+AGG | 0.613163 | 5.2:+2632601 | None:intergenic |
GACTTTGTCGCTGTAAACAA+TGG | 0.613223 | 5.2:+2634549 | None:intergenic |
AGACGCGCAGGCGAAAATGA+GGG | 0.616393 | 5.2:-2632992 | MS.gene21689:CDS |
TAAGCACAATGTAACTCACA+TGG | 0.621921 | 5.2:-2633235 | MS.gene21689:CDS |
GGGAAGGTGGTAGTGATGAG+TGG | 0.622183 | 5.2:-2633153 | MS.gene21689:CDS |
AGAAGTTACTGATCGCGCAA+CGG | 0.624290 | 5.2:-2632746 | MS.gene21689:CDS |
TGGAGTATTGCTGCTCAAGG+TGG | 0.625763 | 5.2:-2633312 | MS.gene21689:CDS |
GAAGCCGCTTTCCGGGAAGG+TGG | 0.630874 | 5.2:-2633166 | MS.gene21689:CDS |
CCTTGAGCAGCAATACTCCA+AGG | 0.631338 | 5.2:+2633315 | None:intergenic |
GTCCTGCTTCAATTTGCACA+TGG | 0.633701 | 5.2:-2633041 | MS.gene21689:CDS |
ACTACCACCTTCCCGGAAAG+CGG | 0.640622 | 5.2:+2633162 | None:intergenic |
TGGTTTAGGACAGGTGACAT+GGG | 0.643048 | 5.2:-2632793 | MS.gene21689:CDS |
GGTGTAATCTTTAGCCATAG+AGG | 0.646758 | 5.2:-2633441 | MS.gene21689:CDS |
GGAAGACCAGATGAATATTG+GGG | 0.647828 | 5.2:-2632631 | MS.gene21689:CDS |
ATGGGAGTAAAGCATCCTGA+TGG | 0.648448 | 5.2:-2632775 | MS.gene21689:CDS |
GCATTTGTGAAACTGAAGGA+AGG | 0.653226 | 5.2:-2632595 | MS.gene21689:CDS |
ACACAAGATGCATTTGAAGG+TGG | 0.655564 | 5.2:-2632817 | MS.gene21689:CDS |
TTGTGCATTTGTGAAACTGA+AGG | 0.665096 | 5.2:-2632599 | MS.gene21689:CDS |
AAGGTGGTAGTGATGAGTGG+CGG | 0.677642 | 5.2:-2633150 | MS.gene21689:CDS |
CTTGAGCAGCAATACTCCAA+GGG | 0.678894 | 5.2:+2633316 | None:intergenic |
ACGGATGTCATCATATCTGG+GGG | 0.679713 | 5.2:-2632727 | MS.gene21689:CDS |
CATTTGTGAAACTGAAGGAA+GGG | 0.680166 | 5.2:-2632594 | MS.gene21689:intron |
CACAATGTAACTCACATGGG+AGG | 0.687273 | 5.2:-2633231 | MS.gene21689:CDS |
AAGCACAATGTAACTCACAT+GGG | 0.688323 | 5.2:-2633234 | MS.gene21689:CDS |
ACGGTGATGTGACTTACACG+TGG | 0.742450 | 5.2:-2634516 | MS.gene21689:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGAAAATATTTAAGAAAA+TGG | + | chr5.2:2632513-2632532 | None:intergenic | 10.0% |
!!! | AGAATAATTTTGTTAATAAA+TGG | - | chr5.2:2632835-2632854 | MS.gene21689:CDS | 10.0% |
!!! | ATCTTTATTGTTTTTTTTAA+AGG | + | chr5.2:2632750-2632769 | None:intergenic | 10.0% |
!!! | CAAAAAATTTAAAACTTCAA+TGG | - | chr5.2:2632785-2632804 | MS.gene21689:CDS | 15.0% |
!!! | CATTGAAGTTTTAAATTTTT+TGG | + | chr5.2:2632787-2632806 | None:intergenic | 15.0% |
!! | AAAGAATTTCACTAAACTAA+TGG | - | chr5.2:2632871-2632890 | MS.gene21689:CDS | 20.0% |
!! | AACCTTGATAAATAAAAACA+TGG | + | chr5.2:2632573-2632592 | None:intergenic | 20.0% |
!! | AATTGATAGATTAGATGAAT+TGG | + | chr5.2:2632917-2632936 | None:intergenic | 20.0% |
!! | TTATGTGATTTCATGTTAAT+AGG | - | chr5.2:2634589-2634608 | MS.gene21689:CDS | 20.0% |
!!! | ATGATCAACAAAAAGAATTT+TGG | + | chr5.2:2633224-2633243 | None:intergenic | 20.0% |
!!! | GAAGTTTTAAATTTTTTGGA+TGG | + | chr5.2:2632783-2632802 | None:intergenic | 20.0% |
! | AAAAAACAAACCACATCATT+AGG | + | chr5.2:2632486-2632505 | None:intergenic | 25.0% |
! | ATGAAATCATTGATGAATCT+TGG | + | chr5.2:2633180-2633199 | None:intergenic | 25.0% |
! | ATTAGATGAATTGGAATTGA+TGG | + | chr5.2:2632908-2632927 | None:intergenic | 25.0% |
! | ATTTAATACATAGCTACATG+TGG | + | chr5.2:2632943-2632962 | None:intergenic | 25.0% |
! | ATTTCAATAAGTTACACTTC+TGG | - | chr5.2:2633433-2633452 | MS.gene21689:CDS | 25.0% |
! | CTTTATCAGTTACATTTCTT+AGG | + | chr5.2:2633642-2633661 | None:intergenic | 25.0% |
! | TGTTAATAAACTCACCAATT+AGG | - | chr5.2:2633728-2633747 | MS.gene21689:CDS | 25.0% |
! | TTTGCACTAGAAAAAATATC+TGG | + | chr5.2:2633805-2633824 | None:intergenic | 25.0% |
!!! | CAATAAACTTGCTAATAGAT+TGG | - | chr5.2:2632695-2632714 | MS.gene21689:CDS | 25.0% |
!!! | CTCCATGTTTTTATTTATCA+AGG | - | chr5.2:2632568-2632587 | MS.gene21689:intron | 25.0% |
AAACATTAGCACAATTCAGT+TGG | - | chr5.2:2634215-2634234 | MS.gene21689:intron | 30.0% | |
AATCCACATCAGTGTATTTA+TGG | - | chr5.2:2633542-2633561 | MS.gene21689:CDS | 30.0% | |
ACAAACACAAATCATCAACA+AGG | + | chr5.2:2633040-2633059 | None:intergenic | 30.0% | |
ATGAGAATCTTATAGCTGAA+GGG | - | chr5.2:2633365-2633384 | MS.gene21689:CDS | 30.0% | |
ATTGTATCACATTCATCCTT+TGG | + | chr5.2:2633415-2633434 | None:intergenic | 30.0% | |
TATGAGAATCTTATAGCTGA+AGG | - | chr5.2:2633364-2633383 | MS.gene21689:CDS | 30.0% | |
TATGGTATGACTGAAACTTA+TGG | - | chr5.2:2633853-2633872 | MS.gene21689:intron | 30.0% | |
TCATAGATCAATGTGTTATG+AGG | + | chr5.2:2633349-2633368 | None:intergenic | 30.0% | |
TCCAAAATTAAGACCAAGAT+TGG | + | chr5.2:2633307-2633326 | None:intergenic | 30.0% | |
TCCTAGAAATGCATTACAAT+CGG | + | chr5.2:2634526-2634545 | None:intergenic | 30.0% | |
TGTAGCCAAAGAATTAAGAT+AGG | + | chr5.2:2633503-2633522 | None:intergenic | 30.0% | |
TTAGCAAGTTTATTGCATGA+TGG | + | chr5.2:2632690-2632709 | None:intergenic | 30.0% | |
!! | TTTTCTAGTGCAAAAGAACT+AGG | - | chr5.2:2633811-2633830 | MS.gene21689:CDS | 30.0% |
!!! | GAAACATTTGCCTAGTTTTA+TGG | - | chr5.2:2634383-2634402 | MS.gene21689:intron | 30.0% |
!!! | TCCAATCTTGGTCTTAATTT+TGG | - | chr5.2:2633303-2633322 | MS.gene21689:CDS | 30.0% |
AAAAAGCTGATTGGAGTTAG+AGG | + | chr5.2:2632336-2632355 | None:intergenic | 35.0% | |
AAGCACAATGTAACTCACAT+GGG | - | chr5.2:2633682-2633701 | MS.gene21689:CDS | 35.0% | |
AATTAAGATAGGCACCTCTA+TGG | + | chr5.2:2633492-2633511 | None:intergenic | 35.0% | |
ACACCATAAATACACTGATG+TGG | + | chr5.2:2633548-2633567 | None:intergenic | 35.0% | |
AGCAAATTGTAGCTCATATG+TGG | + | chr5.2:2633116-2633135 | None:intergenic | 35.0% | |
AGGTGCCTATCTTAATTCTT+TGG | - | chr5.2:2633495-2633514 | MS.gene21689:CDS | 35.0% | |
ATCAATGTGTTATGAGGTGA+TGG | + | chr5.2:2633343-2633362 | None:intergenic | 35.0% | |
ATTAGCACAATTCAGTTGGA+AGG | - | chr5.2:2634219-2634238 | MS.gene21689:intron | 35.0% | |
CAATGTATCATTGCAATGGA+TGG | - | chr5.2:2633572-2633591 | MS.gene21689:CDS | 35.0% | |
CAATTACTTGATGTTGCCAA+GGG | - | chr5.2:2633244-2633263 | MS.gene21689:CDS | 35.0% | |
CATCCATTGCAATGATACAT+TGG | + | chr5.2:2633574-2633593 | None:intergenic | 35.0% | |
CATTTGTGAAACTGAAGGAA+GGG | - | chr5.2:2634322-2634341 | MS.gene21689:intron | 35.0% | |
CTAGAAAAAATATCTGGTGG+CGG | + | chr5.2:2633799-2633818 | None:intergenic | 35.0% | |
GACAAAGTCTCTATCATCTA+CGG | - | chr5.2:2632381-2632400 | MS.gene21689:intron | 35.0% | |
GCACTAGAAAAAATATCTGG+TGG | + | chr5.2:2633802-2633821 | None:intergenic | 35.0% | |
GCTTCTTCAATTTCTCAACT+TGG | - | chr5.2:2632453-2632472 | MS.gene21689:intron | 35.0% | |
GTAACTTCTATGTAACCATC+AGG | + | chr5.2:2634159-2634178 | None:intergenic | 35.0% | |
GTTCCAATGTATCATTGCAA+TGG | - | chr5.2:2633568-2633587 | MS.gene21689:CDS | 35.0% | |
TAAGCACAATGTAACTCACA+TGG | - | chr5.2:2633681-2633700 | MS.gene21689:CDS | 35.0% | |
TCAATTACTTGATGTTGCCA+AGG | - | chr5.2:2633243-2633262 | MS.gene21689:CDS | 35.0% | |
TGGAAGACCAGATGAATATT+GGG | - | chr5.2:2634284-2634303 | MS.gene21689:intron | 35.0% | |
TGTGATGAATGGATATCTCA+AGG | - | chr5.2:2634065-2634084 | MS.gene21689:intron | 35.0% | |
TTCAGTCATACCATATGCAT+GGG | + | chr5.2:2633848-2633867 | None:intergenic | 35.0% | |
TTCAGTTTCACAAATGCACA+AGG | + | chr5.2:2634318-2634337 | None:intergenic | 35.0% | |
TTGGAAGACCAGATGAATAT+TGG | - | chr5.2:2634283-2634302 | MS.gene21689:intron | 35.0% | |
TTGTGCATTTGTGAAACTGA+AGG | - | chr5.2:2634317-2634336 | MS.gene21689:intron | 35.0% | |
TTTCAGTCATACCATATGCA+TGG | + | chr5.2:2633849-2633868 | None:intergenic | 35.0% | |
TTTGATGTAACCCATGCATA+TGG | - | chr5.2:2633835-2633854 | MS.gene21689:intron | 35.0% | |
! | AGGAGTACAACATATTGGAA+TGG | - | chr5.2:2633954-2633973 | MS.gene21689:intron | 35.0% |
! | ATGAATCTTGGTGAGTATTG+AGG | + | chr5.2:2633168-2633187 | None:intergenic | 35.0% |
! | ATTAACATGTTCAGAAGTGC+TGG | + | chr5.2:2633715-2633734 | None:intergenic | 35.0% |
! | TCTAACTCCAATCAGCTTTT+TGG | - | chr5.2:2632335-2632354 | MS.gene21689:intron | 35.0% |
! | TGAAGGGAAACTTGATTTTG+AGG | - | chr5.2:2633381-2633400 | MS.gene21689:CDS | 35.0% |
! | TGTTACAATGAAGAGTGTAC+CGG | - | chr5.2:2633999-2634018 | MS.gene21689:intron | 35.0% |
!! | CACAGAAATATGTTCTGAGA+AGG | - | chr5.2:2634457-2634476 | MS.gene21689:CDS | 35.0% |
!! | GAAATATGTTCTGAGAAGGA+AGG | - | chr5.2:2634461-2634480 | MS.gene21689:CDS | 35.0% |
!! | TGAATCTTGGTGAGTATTGA+GGG | + | chr5.2:2633167-2633186 | None:intergenic | 35.0% |
!!! | GAATTTGCACTTGTTTTGTC+AGG | - | chr5.2:2633063-2633082 | MS.gene21689:CDS | 35.0% |
AACGGATGTCATCATATCTG+GGG | - | chr5.2:2634188-2634207 | MS.gene21689:intron | 40.0% | |
AAGATGCATTTGAAGGTGGA+TGG | - | chr5.2:2634103-2634122 | MS.gene21689:intron | 40.0% | |
AATTGTAGCTCATATGTGGC+TGG | + | chr5.2:2633112-2633131 | None:intergenic | 40.0% | |
ACACAAGATGCATTTGAAGG+TGG | - | chr5.2:2634099-2634118 | MS.gene21689:intron | 40.0% | |
AGGGGAAACAATGTGATGAA+TGG | - | chr5.2:2634054-2634073 | MS.gene21689:intron | 40.0% | |
AGTATGTGATGTAGCTGCAT+GGG | - | chr5.2:2632607-2632626 | MS.gene21689:CDS | 40.0% | |
CAACGGATGTCATCATATCT+GGG | - | chr5.2:2634187-2634206 | MS.gene21689:intron | 40.0% | |
CATTTGAAGGTGGATGGTTT+AGG | - | chr5.2:2634109-2634128 | MS.gene21689:intron | 40.0% | |
GACTTTGTCGCTGTAAACAA+TGG | + | chr5.2:2632370-2632389 | None:intergenic | 40.0% | |
GATCTACCAAAGACATCAAC+TGG | - | chr5.2:2634429-2634448 | MS.gene21689:intron | 40.0% | |
GCAACACAAGATGCATTTGA+AGG | - | chr5.2:2634096-2634115 | MS.gene21689:intron | 40.0% | |
GCATTTGTGAAACTGAAGGA+AGG | - | chr5.2:2634321-2634340 | MS.gene21689:intron | 40.0% | |
GCCGATTGTAATGCATTTCT+AGG | - | chr5.2:2634522-2634541 | MS.gene21689:CDS | 40.0% | |
GGAAGACCAGATGAATATTG+GGG | - | chr5.2:2634285-2634304 | MS.gene21689:intron | 40.0% | |
GGTACACTCTTCATTGTAAC+AGG | + | chr5.2:2634000-2634019 | None:intergenic | 40.0% | |
GGTGTAATCTTTAGCCATAG+AGG | - | chr5.2:2633475-2633494 | MS.gene21689:CDS | 40.0% | |
GTTTGAGGAGCCATAAAACT+AGG | + | chr5.2:2634396-2634415 | None:intergenic | 40.0% | |
TAAGACCAAGATTGGAAGCT+TGG | + | chr5.2:2633299-2633318 | None:intergenic | 40.0% | |
TATCCTAGTGCTCTCTCTAT+TGG | - | chr5.2:2632965-2632984 | MS.gene21689:CDS | 40.0% | |
TCACCAAACACAACAGTTTG+AGG | + | chr5.2:2634411-2634430 | None:intergenic | 40.0% | |
TGGAGTTAGAGGAACATAGT+TGG | + | chr5.2:2632325-2632344 | None:intergenic | 40.0% | |
TGGCTAAAGATTACACCCTT+AGG | + | chr5.2:2633472-2633491 | None:intergenic | 40.0% | |
TGGTGTTTCTCCTAATGATG+TGG | - | chr5.2:2632473-2632492 | MS.gene21689:intron | 40.0% | |
TTCCATGTGCAAATTGAAGC+AGG | + | chr5.2:2633880-2633899 | None:intergenic | 40.0% | |
! | CGTCAAGGAGTACAACATAT+TGG | - | chr5.2:2633949-2633968 | MS.gene21689:intron | 40.0% |
! | GTCTTTCCAGTTGATGTCTT+TGG | + | chr5.2:2634438-2634457 | None:intergenic | 40.0% |
! | TAGTCATCCAGCAGTTTTTG+AGG | - | chr5.2:2634251-2634270 | MS.gene21689:intron | 40.0% |
!! | AATCCAATAGAGAGAGCACT+AGG | + | chr5.2:2632971-2632990 | None:intergenic | 40.0% |
!! | CAATTTGCTGTTCCAATGTC+AGG | - | chr5.2:2633127-2633146 | MS.gene21689:CDS | 40.0% |
!!! | GGAAACTTGATTTTGAGGTG+AGG | - | chr5.2:2633386-2633405 | MS.gene21689:CDS | 40.0% |
AACCACCAAGCTTCCAATCT+TGG | - | chr5.2:2633291-2633310 | MS.gene21689:CDS | 45.0% | |
ACGGATGTCATCATATCTGG+GGG | - | chr5.2:2634189-2634208 | MS.gene21689:intron | 45.0% | |
AGAAGTTACTGATCGCGCAA+CGG | - | chr5.2:2634170-2634189 | MS.gene21689:intron | 45.0% | |
AGGGTACAATGCTACAGAAG+AGG | - | chr5.2:2634341-2634360 | MS.gene21689:intron | 45.0% | |
ATTGGCGAGGTGATGTTTAG+GGG | - | chr5.2:2634036-2634055 | MS.gene21689:intron | 45.0% | |
CACAATGTAACTCACATGGG+AGG | - | chr5.2:2633685-2633704 | MS.gene21689:CDS | 45.0% | |
CATTGGCGAGGTGATGTTTA+GGG | - | chr5.2:2634035-2634054 | MS.gene21689:intron | 45.0% | |
CTTGAGCAGCAATACTCCAA+GGG | + | chr5.2:2633603-2633622 | None:intergenic | 45.0% | |
GAACGCTCCAAAAAGCTGAT+TGG | + | chr5.2:2632345-2632364 | None:intergenic | 45.0% | |
GAGTATGTGATGTAGCTGCA+TGG | - | chr5.2:2632606-2632625 | MS.gene21689:CDS | 45.0% | |
GCAACGGATGTCATCATATC+TGG | - | chr5.2:2634186-2634205 | MS.gene21689:intron | 45.0% | |
GCTCCTCAAACTGTTGTGTT+TGG | - | chr5.2:2634405-2634424 | MS.gene21689:intron | 45.0% | |
GGAACCACATCAACTCCTAA+GGG | - | chr5.2:2633454-2633473 | MS.gene21689:CDS | 45.0% | |
GTCCTGCTTCAATTTGCACA+TGG | - | chr5.2:2633875-2633894 | MS.gene21689:intron | 45.0% | |
GTCTCTCCCCAATATTCATC+TGG | + | chr5.2:2634294-2634313 | None:intergenic | 45.0% | |
TGATGCAAAAACCATTGGCG+AGG | - | chr5.2:2634023-2634042 | MS.gene21689:intron | 45.0% | |
TGGAACCACATCAACTCCTA+AGG | - | chr5.2:2633453-2633472 | MS.gene21689:CDS | 45.0% | |
TTGCACATGGAAGCCAGAAT+GGG | - | chr5.2:2633888-2633907 | MS.gene21689:intron | 45.0% | |
TTTGCACATGGAAGCCAGAA+TGG | - | chr5.2:2633887-2633906 | MS.gene21689:intron | 45.0% | |
! | ATGGGAGTAAAGCATCCTGA+TGG | - | chr5.2:2634141-2634160 | MS.gene21689:intron | 45.0% |
! | ATGGTTTAGGACAGGTGACA+TGG | - | chr5.2:2634122-2634141 | MS.gene21689:intron | 45.0% |
! | CCAATGGTTTTTGCATCAGC+CGG | + | chr5.2:2634021-2634040 | None:intergenic | 45.0% |
! | TGGTTTAGGACAGGTGACAT+GGG | - | chr5.2:2634123-2634142 | MS.gene21689:intron | 45.0% |
!! | GAAAAAATATCTGGTGGCGG+TGG | + | chr5.2:2633796-2633815 | None:intergenic | 45.0% |
!! | GCTTGGTGGTTGATTTTGAC+AGG | + | chr5.2:2633282-2633301 | None:intergenic | 45.0% |
!! | TACACCCTTAGGAGTTGATG+TGG | + | chr5.2:2633461-2633480 | None:intergenic | 45.0% |
!!! | TTTTGAGGTGAGGAGACCAA+AGG | - | chr5.2:2633396-2633415 | MS.gene21689:CDS | 45.0% |
!! | AAATCATTATAATTATAATT+TGG | - | chr5.2:2633005-2633024 | MS.gene21689:CDS | 5.0% |
ACAGCAGCCTCAAAAACTGC+TGG | + | chr5.2:2634261-2634280 | None:intergenic | 50.0% | |
ACGGTGATGTGACTTACACG+TGG | - | chr5.2:2632400-2632419 | MS.gene21689:intron | 50.0% | |
ACTCATCACTACCACCTTCC+CGG | + | chr5.2:2633764-2633783 | None:intergenic | 50.0% | |
AGAAGGAAGGCGAAGGCTAT+GGG | - | chr5.2:2634474-2634493 | MS.gene21689:CDS | 50.0% | |
CAGAGAACAGCTCCTGACAT+TGG | + | chr5.2:2633142-2633161 | None:intergenic | 50.0% | |
CCATTGGCGAGGTGATGTTT+AGG | - | chr5.2:2634034-2634053 | MS.gene21689:intron | 50.0% | |
CCGGCTGATGCAAAAACCAT+TGG | - | chr5.2:2634018-2634037 | MS.gene21689:intron | 50.0% | |
CCTAAACATCACCTCGCCAA+TGG | + | chr5.2:2634037-2634056 | None:intergenic | 50.0% | |
CCTTGAGCAGCAATACTCCA+AGG | + | chr5.2:2633604-2633623 | None:intergenic | 50.0% | |
GACCAAGATTGGAAGCTTGG+TGG | + | chr5.2:2633296-2633315 | None:intergenic | 50.0% | |
! | AAGGTGGTAGTGATGAGTGG+CGG | - | chr5.2:2633766-2633785 | MS.gene21689:CDS | 50.0% |
! | CAATTAGGAAGCCGCTTTCC+GGG | - | chr5.2:2633743-2633762 | MS.gene21689:CDS | 50.0% |
! | CAGGATTTCAAGTGCTCCCT+TGG | + | chr5.2:2633263-2633282 | None:intergenic | 50.0% |
! | CCAATTAGGAAGCCGCTTTC+CGG | - | chr5.2:2633742-2633761 | MS.gene21689:CDS | 50.0% |
! | GAAGGTGGATGGTTTAGGAC+AGG | - | chr5.2:2634114-2634133 | MS.gene21689:intron | 50.0% |
!! | CCTTGGAGTATTGCTGCTCA+AGG | - | chr5.2:2633601-2633620 | MS.gene21689:CDS | 50.0% |
!! | TGGAGTATTGCTGCTCAAGG+TGG | - | chr5.2:2633604-2633623 | MS.gene21689:CDS | 50.0% |
!! | TGTTCTGAGAAGGAAGGCGA+AGG | - | chr5.2:2634467-2634486 | MS.gene21689:CDS | 50.0% |
!!! | AGCAGTTTTTGAGGCTGCTG+TGG | - | chr5.2:2634260-2634279 | MS.gene21689:intron | 50.0% |
!!! | GTTTTTGAGGCTGCTGTGGT+TGG | - | chr5.2:2634264-2634283 | MS.gene21689:intron | 50.0% |
ACTACCACCTTCCCGGAAAG+CGG | + | chr5.2:2633757-2633776 | None:intergenic | 55.0% | |
AGACGCGCAGGCGAAAATGA+GGG | - | chr5.2:2633924-2633943 | MS.gene21689:intron | 55.0% | |
CCGGAAAGCGGCTTCCTAAT+TGG | + | chr5.2:2633745-2633764 | None:intergenic | 55.0% | |
GAGAAGGAAGGCGAAGGCTA+TGG | - | chr5.2:2634473-2634492 | MS.gene21689:CDS | 55.0% | |
GCAATGGATGGTGTGTCCCT+TGG | - | chr5.2:2633584-2633603 | MS.gene21689:CDS | 55.0% | |
! | GCGAAAATGAGGGTGCGTCA+AGG | - | chr5.2:2633934-2633953 | MS.gene21689:intron | 55.0% |
! | GGGAAGGTGGTAGTGATGAG+TGG | - | chr5.2:2633763-2633782 | MS.gene21689:CDS | 55.0% |
CAGACGCGCAGGCGAAAATG+AGG | - | chr5.2:2633923-2633942 | MS.gene21689:intron | 60.0% | |
! | ATTTTCGCCTGCGCGTCTGG+AGG | + | chr5.2:2633922-2633941 | None:intergenic | 60.0% |
! | CTCATTTTCGCCTGCGCGTC+TGG | + | chr5.2:2633925-2633944 | None:intergenic | 60.0% |
! | GGAGGCAGACTAGCCCATTC+TGG | + | chr5.2:2633904-2633923 | None:intergenic | 60.0% |
! | TAGGAAGCCGCTTTCCGGGA+AGG | - | chr5.2:2633747-2633766 | MS.gene21689:CDS | 60.0% |
TAGTCTGCCTCCAGACGCGC+AGG | - | chr5.2:2633912-2633931 | MS.gene21689:intron | 65.0% | |
! | GAAGCCGCTTTCCGGGAAGG+TGG | - | chr5.2:2633750-2633769 | MS.gene21689:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 2632297 | 2634641 | 2632297 | ID=MS.gene21689 |
chr5.2 | mRNA | 2632297 | 2634641 | 2632297 | ID=MS.gene21689.t1;Parent=MS.gene21689 |
chr5.2 | exon | 2634444 | 2634641 | 2634444 | ID=MS.gene21689.t1.exon1;Parent=MS.gene21689.t1 |
chr5.2 | CDS | 2634444 | 2634641 | 2634444 | ID=cds.MS.gene21689.t1;Parent=MS.gene21689.t1 |
chr5.2 | exon | 2632595 | 2633853 | 2632595 | ID=MS.gene21689.t1.exon2;Parent=MS.gene21689.t1 |
chr5.2 | CDS | 2632595 | 2633853 | 2632595 | ID=cds.MS.gene21689.t1;Parent=MS.gene21689.t1 |
chr5.2 | exon | 2632297 | 2632327 | 2632297 | ID=MS.gene21689.t1.exon3;Parent=MS.gene21689.t1 |
chr5.2 | CDS | 2632297 | 2632327 | 2632297 | ID=cds.MS.gene21689.t1;Parent=MS.gene21689.t1 |
Gene Sequence |
Protein sequence |