AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024712

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024712.t1 MTR_5g008800 98.185 551 10 0 1 551 1 551 0.0 1120
MS.gene024712.t1 MTR_5g008820 80.952 546 102 1 1 546 1 544 0.0 936
MS.gene024712.t1 MTR_8g074040 63.787 544 195 2 1 542 43 586 0.0 769
MS.gene024712.t1 MTR_8g074040 64.530 468 164 2 77 542 1 468 0.0 667
MS.gene024712.t1 MTR_8g074120 64.509 479 168 1 67 543 20 498 0.0 666
MS.gene024712.t1 MTR_4g121600 52.269 551 250 4 9 546 15 565 0.0 596
MS.gene024712.t1 MTR_2g044180 52.087 551 251 4 9 546 15 565 0.0 596
MS.gene024712.t1 MTR_3g064420 50.452 553 260 3 1 539 1 553 0.0 587
MS.gene024712.t1 MTR_5g076240 53.370 549 240 7 8 544 8 552 0.0 585
MS.gene024712.t1 MTR_5g076220 50.722 554 256 8 1 541 1 550 0.0 533
MS.gene024712.t1 MTR_5g023730 49.726 547 262 9 2 540 3 544 0.0 530
MS.gene024712.t1 MTR_5g076200 50.360 556 259 8 1 543 1 552 0.0 528
MS.gene024712.t1 MTR_0161s0050 50.000 560 257 8 1 543 1 554 3.26e-178 514
MS.gene024712.t1 MTR_2g044180 51.899 474 215 4 86 546 1 474 5.98e-176 505
MS.gene024712.t1 MTR_0803s0020 30.843 522 334 11 14 528 235 736 6.45e-63 223
MS.gene024712.t1 MTR_2g095510 29.323 532 318 16 29 538 42 537 1.65e-47 174
MS.gene024712.t1 MTR_8g039720 28.516 512 310 16 40 526 65 545 1.12e-45 169
MS.gene024712.t1 MTR_4g057730 28.257 545 340 14 14 538 27 540 3.15e-42 159
MS.gene024712.t1 MTR_1569s0010 26.497 551 341 12 22 533 3 528 2.21e-41 156
MS.gene024712.t1 MTR_1g026310 26.453 499 335 12 40 526 68 546 3.20e-41 157
MS.gene024712.t1 MTR_3g035130 28.679 530 326 20 19 534 18 509 8.54e-40 152
MS.gene024712.t1 MTR_2g105570 27.734 512 341 14 39 538 53 547 1.15e-39 152
MS.gene024712.t1 MTR_5g007640 27.878 556 339 17 9 538 66 585 1.95e-39 152
MS.gene024712.t1 MTR_3g460770 26.266 533 348 16 19 535 33 536 5.06e-39 150
MS.gene024712.t1 MTR_4g005750 28.963 511 328 14 40 538 53 540 1.44e-38 149
MS.gene024712.t1 MTR_3g088880 28.571 406 261 11 152 541 165 557 7.07e-37 144
MS.gene024712.t1 MTR_3g088870 28.610 374 242 8 180 541 199 559 3.70e-36 142
MS.gene024712.t1 MTR_1g090737 26.565 527 332 15 36 542 79 570 9.49e-36 141
MS.gene024712.t1 MTR_4g077900 27.856 499 315 14 52 533 1 471 4.78e-34 135
MS.gene024712.t1 MTR_1g063110 26.418 564 349 16 14 551 28 551 1.42e-33 134
MS.gene024712.t1 MTR_4g128337 26.448 518 336 16 27 526 44 534 1.48e-33 134
MS.gene024712.t1 MTR_1g073180 27.879 495 312 12 41 526 62 520 3.21e-33 133
MS.gene024712.t1 MTR_1g063120 27.308 509 320 15 41 526 57 538 7.29e-33 132
MS.gene024712.t1 MTR_5g027480 28.864 537 322 18 14 534 57 549 7.36e-33 132
MS.gene024712.t1 MTR_5g027500 28.715 498 314 14 52 529 81 557 7.77e-33 132
MS.gene024712.t1 MTR_3g035130 27.917 480 297 17 19 486 18 460 2.43e-31 127
MS.gene024712.t1 MTR_4g057730 27.637 474 295 13 14 469 27 470 5.04e-31 126
MS.gene024712.t1 MTR_1g073180 27.066 484 309 11 41 516 84 531 2.03e-29 122
MS.gene024712.t1 MTR_2g030240 25.194 516 339 15 47 529 35 536 2.64e-29 122
MS.gene024712.t1 MTR_2g095510 28.111 434 255 15 29 441 42 439 7.89e-28 116
MS.gene024712.t1 MTR_1586s0010 26.396 394 267 11 13 394 39 421 6.88e-26 110
MS.gene024712.t1 MTR_4g057730 26.696 457 287 13 14 452 27 453 1.22e-25 110
MS.gene024712.t1 MTR_2g030240 26.000 400 258 13 163 529 48 442 3.56e-24 105
MS.gene024712.t1 MTR_1054s0020 23.902 569 341 20 6 539 260 771 1.89e-22 102
MS.gene024712.t1 MTR_4g011790 26.753 385 232 13 182 534 227 593 6.42e-22 100
MS.gene024712.t1 MTR_4g011790 26.632 383 231 13 182 532 227 591 1.02e-21 99.4
MS.gene024712.t1 MTR_4g011790 26.142 394 232 13 182 534 227 602 9.02e-21 96.7
MS.gene024712.t1 MTR_4g013210 26.781 407 240 14 168 534 52 440 3.40e-20 94.0
MS.gene024712.t1 MTR_7g109830 23.636 495 290 18 41 470 78 549 2.36e-19 92.4
MS.gene024712.t1 MTR_1g086600 21.881 489 308 12 41 470 100 573 1.29e-18 90.1
MS.gene024712.t1 MTR_7g084850 25.323 541 343 20 37 536 200 720 2.65e-17 85.9
MS.gene024712.t1 MTR_4g013210 27.168 346 205 11 168 484 204 531 3.53e-17 85.1
MS.gene024712.t1 MTR_4g068670 22.835 508 291 23 39 474 74 552 3.67e-17 85.5
MS.gene024712.t1 MTR_4g013210 26.835 395 214 16 168 534 52 399 4.01e-17 84.0
MS.gene024712.t1 MTR_4g013210 26.835 395 214 16 168 534 204 551 8.02e-17 84.0
MS.gene024712.t1 MTR_1g026430 24.363 353 239 9 40 382 68 402 2.89e-14 75.5
MS.gene024712.t1 MTR_1g026470 24.011 354 241 9 40 383 68 403 2.61e-13 72.4
MS.gene024712.t1 MTR_3g087980 26.513 347 177 14 182 463 248 581 5.74e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024712.t1 AT1G20560 68.488 549 169 1 1 545 3 551 0.0 808
MS.gene024712.t1 AT2G17650 60.612 556 205 2 1 542 48 603 0.0 716
MS.gene024712.t1 AT1G20560 68.710 473 144 1 77 545 1 473 0.0 694
MS.gene024712.t1 AT3G16910 51.449 552 254 4 9 546 17 568 0.0 603
MS.gene024712.t1 AT1G76290 53.223 543 246 4 1 540 1 538 0.0 596
MS.gene024712.t1 AT5G16370 51.543 551 252 7 1 541 1 546 0.0 570
MS.gene024712.t1 AT5G16340 50.909 550 255 6 1 540 1 545 0.0 560
MS.gene024712.t1 AT1G66120 49.635 548 267 4 1 539 1 548 0.0 550
MS.gene024712.t1 AT1G75960 51.002 549 254 6 1 539 1 544 0.0 548
MS.gene024712.t1 AT1G65880 48.561 556 269 4 1 539 1 556 0.0 543
MS.gene024712.t1 AT1G65890 48.649 555 269 4 1 539 1 555 0.0 538
MS.gene024712.t1 AT1G77240 48.723 548 268 7 1 539 1 544 0.0 535
MS.gene024712.t1 AT1G21530 47.645 552 272 8 1 539 1 548 0.0 525
MS.gene024712.t1 AT1G21540 48.282 553 268 8 1 539 1 549 1.37e-180 520
MS.gene024712.t1 AT1G21530 47.645 552 270 9 1 539 1 546 1.44e-180 520
MS.gene024712.t1 AT1G68270 43.964 555 265 8 1 539 1 525 7.01e-155 454
MS.gene024712.t1 AT4G05160 29.670 546 327 15 17 538 30 542 2.34e-50 182
MS.gene024712.t1 AT1G20510 27.022 544 349 16 7 526 11 530 6.94e-44 164
MS.gene024712.t1 AT1G20500 27.686 484 311 12 58 529 83 539 7.24e-43 161
MS.gene024712.t1 AT1G65060 27.239 547 344 15 10 535 46 559 1.18e-40 155
MS.gene024712.t1 AT5G63380 31.755 359 218 11 179 526 202 544 2.61e-40 154
MS.gene024712.t1 AT3G21240 28.070 513 327 15 39 535 63 549 8.87e-40 152
MS.gene024712.t1 AT1G20480 27.607 489 318 13 51 526 86 551 2.33e-39 151
MS.gene024712.t1 AT3G48990 28.220 528 331 13 19 534 17 508 3.73e-38 147
MS.gene024712.t1 AT3G21230 28.872 523 326 16 38 541 74 569 2.04e-35 140
MS.gene024712.t1 AT4G19010 30.081 369 225 10 182 534 205 556 4.50e-34 136
MS.gene024712.t1 AT1G20510 26.543 486 310 15 7 469 11 472 1.01e-33 134
MS.gene024712.t1 AT5G38120 27.216 485 315 13 56 529 82 539 5.05e-33 133
MS.gene024712.t1 AT3G21230 28.831 496 305 16 38 512 74 542 2.24e-31 128
MS.gene024712.t1 AT1G62940 27.132 516 320 19 41 535 55 535 2.62e-30 125
MS.gene024712.t1 AT3G21240 27.578 446 282 14 40 470 64 483 4.28e-29 120
MS.gene024712.t1 AT3G21240 27.578 446 282 14 40 470 64 483 4.28e-29 120
MS.gene024712.t1 AT5G38120 26.739 460 300 12 56 505 82 514 6.25e-29 120
MS.gene024712.t1 AT1G51680 26.820 522 327 15 39 535 65 556 7.68e-29 120
MS.gene024712.t1 AT1G20510 26.201 458 291 15 7 441 11 444 2.41e-27 115
MS.gene024712.t1 AT1G51680 26.884 491 305 14 39 505 65 525 1.49e-26 114
MS.gene024712.t1 AT1G30520 23.679 549 361 13 20 529 13 542 1.09e-24 108
MS.gene024712.t1 AT1G30520 23.679 549 361 13 20 529 13 542 1.09e-24 108
MS.gene024712.t1 AT3G21230 28.381 451 278 15 38 470 74 497 7.01e-24 105
MS.gene024712.t1 AT1G65060 25.664 452 283 14 10 441 46 464 2.72e-23 103
MS.gene024712.t1 AT3G16170 25.700 393 227 12 182 534 235 602 1.02e-22 102
MS.gene024712.t1 AT5G38120 26.179 424 276 12 56 469 82 478 5.67e-22 99.8
MS.gene024712.t1 AT5G38120 26.179 424 276 12 56 469 82 478 5.67e-22 99.8
MS.gene024712.t1 AT2G47240 23.673 490 296 16 41 470 78 549 5.78e-21 97.4
MS.gene024712.t1 AT2G47240 23.673 490 296 16 41 470 78 549 5.78e-21 97.4
MS.gene024712.t1 AT2G47240 23.673 490 296 16 41 470 78 549 5.78e-21 97.4
MS.gene024712.t1 AT2G47240 23.673 490 296 16 41 470 19 490 6.44e-21 97.1
MS.gene024712.t1 AT1G51680 26.316 456 282 14 39 470 65 490 1.49e-19 92.4
MS.gene024712.t1 AT1G20490 25.806 372 240 11 58 418 83 429 1.03e-18 89.4
MS.gene024712.t1 AT1G20490 25.806 372 240 11 58 418 83 429 1.03e-18 89.4
MS.gene024712.t1 AT1G49430 23.952 501 295 19 40 474 77 557 1.89e-17 86.3
MS.gene024712.t1 AT5G36880 24.182 550 338 22 37 536 145 665 2.13e-17 86.3
MS.gene024712.t1 AT5G36880 24.182 550 338 22 37 536 145 665 2.13e-17 86.3
MS.gene024712.t1 AT5G36880 24.182 550 338 22 37 536 145 665 2.13e-17 86.3
MS.gene024712.t1 AT5G36880 24.182 550 338 22 37 536 145 665 2.13e-17 86.3
MS.gene024712.t1 AT5G36880 23.818 550 340 21 37 536 195 715 3.07e-17 85.9
MS.gene024712.t1 AT1G64400 25.971 489 277 19 41 466 81 547 6.02e-17 84.7
MS.gene024712.t1 AT1G30520 22.128 470 320 11 20 465 13 460 1.67e-14 76.6
MS.gene024712.t1 AT1G30520 22.128 470 320 11 20 465 13 460 1.67e-14 76.6
MS.gene024712.t1 AT4G11030 23.108 502 275 21 41 466 81 547 8.57e-13 71.6

Find 137 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAGGATATTATCATATC+TGG 0.228485 5.4:-3620739 MS.gene024712:CDS
TCTCACTCCAATCAGCTTCT+TGG 0.231430 5.4:-3622387 MS.gene024712:CDS
TCATACATTGCTGGAATATT+AGG 0.253425 5.4:+3621834 None:intergenic
ATTGGATCCCATTCATCTTT+TGG 0.275746 5.4:+3621519 None:intergenic
CTTTAGCAGTTACATTTCTT+TGG 0.277220 5.4:+3621292 None:intergenic
GAAGTGTAATTCAAAGAAAT+TGG 0.280408 5.4:+3621501 None:intergenic
AACTACCAATCTTCCACTTT+TGG 0.288627 5.4:-3621643 MS.gene024712:CDS
AGTCTATGCCGGTGTATTTA+TGG 0.290959 5.4:-3621389 MS.gene024712:CDS
CCATGGGTGAGGTGATGTTT+AGG 0.293811 5.4:-3620891 MS.gene024712:CDS
CATTTAAAGGTGGATGGTTT+AGG 0.293868 5.4:-3620816 MS.gene024712:CDS
GCAACACAAGAGTCATTTAA+AGG 0.314268 5.4:-3620829 MS.gene024712:CDS
AGGTGCTTATCTTAATTCTT+TGG 0.316766 5.4:-3621436 MS.gene024712:CDS
CGAGACAGGCTACTCCATTC+TGG 0.326334 5.4:+3621024 None:intergenic
TATGGTTTGACAGAAACTTA+TGG 0.346969 5.4:-3621072 MS.gene024712:CDS
TGGGAGACCTGATGAGTATT+GGG 0.357069 5.4:-3620641 MS.gene024712:CDS
TACTCGTCATGATTCGTTGA+TGG 0.363124 5.4:-3621763 MS.gene024712:CDS
TTTGATTTAGTTCATTCATA+TGG 0.364655 5.4:-3621090 MS.gene024712:CDS
GTAATTCATGATCTACAAAA+AGG 0.367573 5.4:+3621706 None:intergenic
GATATCAGAAAGCCACTTCC+GGG 0.373117 5.4:-3621183 MS.gene024712:CDS
GCAATGTATGAGCTGCATTT+TGG 0.374424 5.4:-3621822 MS.gene024712:CDS
TGATATCAGAAAGCCACTTC+CGG 0.382311 5.4:-3621184 MS.gene024712:CDS
AATTAAGATAAGCACCTCTA+TGG 0.382407 5.4:+3621442 None:intergenic
CATGGGTGAGGTGATGTTTA+GGG 0.382589 5.4:-3620890 MS.gene024712:CDS
GTCTTGCCGGTTGATGTCTT+TGG 0.393924 5.4:+3620490 None:intergenic
TGGCTATATACTACACCTTT+AGG 0.394178 5.4:+3621462 None:intergenic
CAAAGAAATGTAACTGCTAA+AGG 0.396156 5.4:-3621291 MS.gene024712:CDS
ATTCTCGTAGATCAATGTTC+CGG 0.401852 5.4:+3621581 None:intergenic
ATTTCTTTGAATTACACTTC+AGG 0.409528 5.4:-3621498 MS.gene024712:CDS
TGACGGTTACATAGAACTTA+AGG 0.410660 5.4:-3620767 MS.gene024712:CDS
ATGGTTTAGGACTGGTGACT+TGG 0.411295 5.4:-3620803 MS.gene024712:CDS
TCCAAAATTAAGACCAAAAG+TGG 0.416587 5.4:+3621630 None:intergenic
GGAAGTGGCTTTCTGATATC+AGG 0.427800 5.4:+3621186 None:intergenic
TTCTCGTAGATCAATGTTCC+GGG 0.430851 5.4:+3621582 None:intergenic
GTTGTTGAGGCAGCTGTTGT+TGG 0.430997 5.4:-3620661 MS.gene024712:CDS
TGAAAAGACCAAAAGATGAA+TGG 0.437562 5.4:-3621527 MS.gene024712:CDS
CGAATCATGACGAGTATTCA+AGG 0.441411 5.4:+3621770 None:intergenic
AAATGCAGCTCATACATTGC+TGG 0.444160 5.4:+3621825 None:intergenic
TCGCCTGCTCCTCTCGAGAC+AGG 0.444470 5.4:+3621010 None:intergenic
CTCAAAATCAAGTTTCCCTT+CGG 0.445425 5.4:+3621551 None:intergenic
GAAGGAGAAGGCAAAGGCTA+TGG 0.446378 5.4:-3620452 MS.gene024712:CDS
GAAAAGACCAAAAGATGAAT+GGG 0.450929 5.4:-3621526 MS.gene024712:CDS
GAGCGCTCCAAGAAGCTGAT+TGG 0.451334 5.4:+3622380 None:intergenic
TAGCCTGTCTCGAGAGGAGC+AGG 0.452101 5.4:-3621013 MS.gene024712:CDS
CCATGTTTCATTGCAATGGA+TGG 0.452299 5.4:-3621359 MS.gene024712:CDS
GTCTCTCCCCAATACTCATC+AGG 0.454603 5.4:+3620634 None:intergenic
TAAGACCAAAAGTGGAAGAT+TGG 0.454652 5.4:+3621638 None:intergenic
CGAAGGATATTATCATATCT+GGG 0.456932 5.4:-3620738 MS.gene024712:CDS
AAAGAAATGTAACTGCTAAA+GGG 0.463695 5.4:-3621290 MS.gene024712:CDS
ATTTGTGTAGGTTGCTGTGT+TGG 0.466354 5.4:-3621859 MS.gene024712:intron
TTGTTGAGGCAGCTGTTGTT+GGG 0.470119 5.4:-3620660 MS.gene024712:CDS
ACAGCTGCCTCAACAACTGC+TGG 0.470476 5.4:+3620667 None:intergenic
CGTCAAGGAGTACAACATAT+TGG 0.470912 5.4:-3620976 MS.gene024712:CDS
GTTCCCATGTTTCATTGCAA+TGG 0.474688 5.4:-3621363 MS.gene024712:CDS
ATTAATGAGTTCAGAACTGT+TGG 0.476604 5.4:+3621219 None:intergenic
AGAAACACCGAGTTGAGAAA+TGG 0.477163 5.4:+3622262 None:intergenic
GATCTGCCAAAGACATCAAC+CGG 0.477410 5.4:-3620496 MS.gene024712:CDS
TTGACAGAAACTTATGGTCC+TGG 0.482770 5.4:-3621066 MS.gene024712:CDS
AAAGGTGGATGGTTTAGGAC+TGG 0.483012 5.4:-3620811 MS.gene024712:CDS
CGGTGTTTCTCCTCATGATG+TGG 0.485617 5.4:-3622249 MS.gene024712:intron
TTGGGAGACCTGATGAGTAT+TGG 0.488351 5.4:-3620642 MS.gene024712:CDS
TTCCATGTGCAAATTGATCC+AGG 0.491293 5.4:+3621048 None:intergenic
CCATCCATTGCAATGAAACA+TGG 0.496766 5.4:+3621359 None:intergenic
GAACGTAGTTAGCGTTGCAT+TGG 0.497591 5.4:+3622411 None:intergenic
TGAATTACTTGATATTGCTA+AGG 0.502727 5.4:-3621691 MS.gene024712:CDS
ACTACTACCTTCCCCGGAAG+TGG 0.505110 5.4:+3621171 None:intergenic
TGGTTTAGGACTGGTGACTT+GGG 0.510160 5.4:-3620802 MS.gene024712:CDS
AAACATTAGCACCATTGAGT+TGG 0.513653 5.4:-3620710 MS.gene024712:CDS
GCAATGGATGGTGTCTCCCT+TGG 0.517996 5.4:-3621347 MS.gene024712:CDS
TGTGATGAATGGATATCTAA+AGG 0.519167 5.4:-3620860 MS.gene024712:CDS
AGGCGGTGCTCCACCGCCAC+CGG 0.520554 5.4:-3621142 MS.gene024712:CDS
GCTTCTTCCATTTCTCAACT+CGG 0.522221 5.4:-3622269 MS.gene024712:CDS
AATAACACCTTCCAACTCAA+TGG 0.523579 5.4:+3620699 None:intergenic
GGAACAACATCAAGTCCTAA+AGG 0.525359 5.4:-3621477 MS.gene024712:CDS
TTTGCACATGGAAACCAGAA+TGG 0.525741 5.4:-3621038 MS.gene024712:CDS
AGGGGAAACACTGTGATGAA+TGG 0.526822 5.4:-3620871 MS.gene024712:CDS
CATAGAACAGCCCCTGACAT+TGG 0.528095 5.4:+3621795 None:intergenic
CTTTAGAAATGTATTACAGT+CGG 0.538466 5.4:+3620401 None:intergenic
GGTGACATCGTTGTAGATGA+TGG 0.539544 5.4:+3622331 None:intergenic
GCTCATCCATCAGTCTCTCC+CGG 0.539601 5.4:-3621600 MS.gene024712:CDS
CAGAAAGCCACTTCCGGGGA+AGG 0.540398 5.4:-3621178 MS.gene024712:CDS
TACGAGAATCTTATATCCGA+AGG 0.540923 5.4:-3621567 MS.gene024712:CDS
GTCATCACTACTACCTTCCC+CGG 0.545022 5.4:+3621165 None:intergenic
AAGAGTCATTTAAAGGTGGA+TGG 0.546163 5.4:-3620822 MS.gene024712:CDS
GAATTACTTGATATTGCTAA+GGG 0.549278 5.4:-3621690 MS.gene024712:CDS
AATGTTCCGGGAGAGACTGA+TGG 0.553323 5.4:+3621594 None:intergenic
GGTACACTCTTCATTGTGAC+AGG 0.562785 5.4:+3620928 None:intergenic
TTGTGCGTTTGTGAAGTTGA+AGG 0.563096 5.4:-3620608 MS.gene024712:CDS
AAGGAGAAGGCAAAGGCTAT+GGG 0.567730 5.4:-3620451 MS.gene024712:CDS
CCTTGGAGTATTGCTGCTCA+AGG 0.568786 5.4:-3621330 MS.gene024712:CDS
AGTTAGAAGGTGACGATGGA+AGG 0.571786 5.4:-3622440 None:intergenic
AACTTTGTTACTGTAAACAA+TGG 0.574621 5.4:+3622355 None:intergenic
CAATGAGATGAAGTCTATGC+CGG 0.575034 5.4:-3621400 MS.gene024712:CDS
CCTAAACATCACCTCACCCA+TGG 0.581531 5.4:+3620891 None:intergenic
GAAGGGAGGGCACAATGCTA+CGG 0.582366 5.4:-3620590 MS.gene024712:CDS
GGGAAGGTAGTAGTGATGAC+AGG 0.592219 5.4:-3621162 MS.gene024712:CDS
AGGAGTACAACATATTGGAC+TGG 0.595988 5.4:-3620971 MS.gene024712:CDS
TGTGCGTTTGTGAAGTTGAA+GGG 0.597382 5.4:-3620607 MS.gene024712:CDS
AAGAAGCTGATTGGAGTGAG+AGG 0.599442 5.4:+3622389 None:intergenic
GTACAACATATTGGACTGGA+AGG 0.601901 5.4:-3620967 MS.gene024712:CDS
TAGTCATCCAGCAGTTGTTG+AGG 0.610515 5.4:-3620674 MS.gene024712:CDS
AAGCACAAAGTAACACACAC+GGG 0.611637 5.4:-3621249 MS.gene024712:CDS
ATTAGCACCATTGAGTTGGA+AGG 0.615739 5.4:-3620706 MS.gene024712:CDS
CATCCATTGCAATGAAACAT+GGG 0.616932 5.4:+3621360 None:intergenic
AAGGAACAAACCACATCATG+AGG 0.618013 5.4:+3622239 None:intergenic
ATGGAGTAGCCTGTCTCGAG+AGG 0.618262 5.4:-3621019 MS.gene024712:CDS
CCTTGAGCAGCAATACTCCA+AGG 0.618919 5.4:+3621330 None:intergenic
TTCAACTTCACAAACGCACA+AGG 0.624923 5.4:+3620610 None:intergenic
TGGAGTATTGCTGCTCAAGG+TGG 0.625763 5.4:-3621327 MS.gene024712:CDS
GAAGGATATTATCATATCTG+GGG 0.626950 5.4:-3620737 MS.gene024712:CDS
ACGAGAATCTTATATCCGAA+GGG 0.627897 5.4:-3621566 MS.gene024712:CDS
ATGGGTGAGGTGATGTTTAG+GGG 0.630548 5.4:-3620889 MS.gene024712:CDS
TGTCACAATGAAGAGTGTAC+CGG 0.633282 5.4:-3620926 MS.gene024712:CDS
AGAACTTAAGGATCGGTCGA+AGG 0.636389 5.4:-3620755 MS.gene024712:CDS
CGTTTGTGAAGTTGAAGGGA+GGG 0.637801 5.4:-3620603 MS.gene024712:CDS
TTGGGAGTAAAGCATTCTGA+CGG 0.644221 5.4:-3620784 MS.gene024712:CDS
CCGGCTGATGCGAAAACCAT+GGG 0.646339 5.4:-3620907 MS.gene024712:CDS
TTTGTTACTGTAAACAATGG+CGG 0.648949 5.4:+3622358 None:intergenic
ACACAAGAGTCATTTAAAGG+TGG 0.651781 5.4:-3620826 MS.gene024712:CDS
GGAACACACCATAAATACAC+CGG 0.652672 5.4:+3621381 None:intergenic
GTCCTGGATCAATTTGCACA+TGG 0.656520 5.4:-3621050 MS.gene024712:CDS
TAAGCACAAAGTAACACACA+CGG 0.660502 5.4:-3621250 MS.gene024712:CDS
CTTGAGCAGCAATACTCCAA+GGG 0.661249 5.4:+3621331 None:intergenic
AGTGGCTTTCTGATATCAGG+TGG 0.661622 5.4:+3621189 None:intergenic
GGTGTAGTATATAGCCATAG+AGG 0.662140 5.4:-3621456 MS.gene024712:CDS
TGATGCGAAAACCATGGGTG+AGG 0.664777 5.4:-3620902 MS.gene024712:CDS
GTTACATAGAACTTAAGGAT+CGG 0.668885 5.4:-3620762 MS.gene024712:CDS
AAGGATATTATCATATCTGG+GGG 0.669368 5.4:-3620736 MS.gene024712:CDS
ATATCAGAAAGCCACTTCCG+GGG 0.673117 5.4:-3621182 MS.gene024712:CDS
ACCGGCTGATGCGAAAACCA+TGG 0.679532 5.4:-3620908 MS.gene024712:CDS
GCGTTTGTGAAGTTGAAGGG+AGG 0.681440 5.4:-3620604 MS.gene024712:CDS
ACAACGATGTCACCTACACA+TGG 0.682235 5.4:-3622322 MS.gene024712:CDS
AGCACAAAGTAACACACACG+GGG 0.696294 5.4:-3621248 MS.gene024712:CDS
GGGAGACCTGATGAGTATTG+GGG 0.710890 5.4:-3620640 MS.gene024712:CDS
AAGGTAGTAGTGATGACAGG+CGG 0.720822 5.4:-3621159 MS.gene024712:CDS
ATGAGTCTGAGACCATGTGT+AGG 0.729803 5.4:+3622310 None:intergenic
CACAAAGTAACACACACGGG+GGG 0.730025 5.4:-3621246 MS.gene024712:CDS
GCACAAAGTAACACACACGG+GGG 0.764468 5.4:-3621247 MS.gene024712:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTCTGTTAATTT+TGG - chr5.4:3620700-3620719 MS.gene024712:CDS 10.0%
!!! AATTTGAATTTGTTTGAAAA+AGG + chr5.4:3620622-3620641 None:intergenic 15.0%
!!! TTTGATTTAGTTCATTCATA+TGG - chr5.4:3621749-3621768 MS.gene024712:CDS 20.0%
! AAAGAAATGTAACTGCTAAA+GGG - chr5.4:3621549-3621568 MS.gene024712:CDS 25.0%
! AACTTTGTTACTGTAAACAA+TGG + chr5.4:3620487-3620506 None:intergenic 25.0%
! ATTTCTTTGAATTACACTTC+AGG - chr5.4:3621341-3621360 MS.gene024712:CDS 25.0%
! GAAGAAATATGATTACAAGT+TGG - chr5.4:3620910-3620929 MS.gene024712:CDS 25.0%
! GAAGTGTAATTCAAAGAAAT+TGG + chr5.4:3621341-3621360 None:intergenic 25.0%
! GAATTACTTGATATTGCTAA+GGG - chr5.4:3621149-3621168 MS.gene024712:CDS 25.0%
! GTAATTCATGATCTACAAAA+AGG + chr5.4:3621136-3621155 None:intergenic 25.0%
! TCGCTAGATTATAGATTTAA+AGG + chr5.4:3620662-3620681 None:intergenic 25.0%
! TGAATTACTTGATATTGCTA+AGG - chr5.4:3621148-3621167 MS.gene024712:CDS 25.0%
!! AAACTACTTAGAATTTTGCA+TGG - chr5.4:3620854-3620873 MS.gene024712:CDS 25.0%
!!! AAAATTTGTTTTGAAGGAGA+AGG - chr5.4:3622375-3622394 MS.gene024712:CDS 25.0%
!!! GACACAAAAATTTGTTTTGA+AGG - chr5.4:3622369-3622388 MS.gene024712:CDS 25.0%
!!! TAATCTAGCGATTTTTCAAT+TGG - chr5.4:3620671-3620690 MS.gene024712:CDS 25.0%
!!! TTAATTTTGGTTTTGATCGA+AGG - chr5.4:3620713-3620732 MS.gene024712:CDS 25.0%
AAGGATATTATCATATCTGG+GGG - chr5.4:3622103-3622122 MS.gene024712:intron 30.0%
AATTAAGATAAGCACCTCTA+TGG + chr5.4:3621400-3621419 None:intergenic 30.0%
AGGTGCTTATCTTAATTCTT+TGG - chr5.4:3621403-3621422 MS.gene024712:CDS 30.0%
ATTAATGAGTTCAGAACTGT+TGG + chr5.4:3621623-3621642 None:intergenic 30.0%
CAAAGAAATGTAACTGCTAA+AGG - chr5.4:3621548-3621567 MS.gene024712:CDS 30.0%
CGAAGGATATTATCATATCT+GGG - chr5.4:3622101-3622120 MS.gene024712:intron 30.0%
CTTTAGCAGTTACATTTCTT+TGG + chr5.4:3621550-3621569 None:intergenic 30.0%
GAAAAGACCAAAAGATGAAT+GGG - chr5.4:3621313-3621332 MS.gene024712:CDS 30.0%
GAAGGATATTATCATATCTG+GGG - chr5.4:3622102-3622121 MS.gene024712:intron 30.0%
GAATTTGCACTTATTTGTGT+AGG - chr5.4:3620968-3620987 MS.gene024712:CDS 30.0%
GATATTATAAAGCACAGACT+CGG + chr5.4:3620830-3620849 None:intergenic 30.0%
GTTACATAGAACTTAAGGAT+CGG - chr5.4:3622077-3622096 MS.gene024712:intron 30.0%
TATGGTTTGACAGAAACTTA+TGG - chr5.4:3621767-3621786 MS.gene024712:CDS 30.0%
TCATACATTGCTGGAATATT+AGG + chr5.4:3621008-3621027 None:intergenic 30.0%
TCCAAAATTAAGACCAAAAG+TGG + chr5.4:3621212-3621231 None:intergenic 30.0%
TCGAAGGATATTATCATATC+TGG - chr5.4:3622100-3622119 MS.gene024712:intron 30.0%
TGAAAAGACCAAAAGATGAA+TGG - chr5.4:3621312-3621331 MS.gene024712:CDS 30.0%
TGTGATGAATGGATATCTAA+AGG - chr5.4:3621979-3621998 MS.gene024712:intron 30.0%
TTTGTTACTGTAAACAATGG+CGG + chr5.4:3620484-3620503 None:intergenic 30.0%
! AACAAATTTTTGTGTCTTGC+CGG + chr5.4:3622365-3622384 None:intergenic 30.0%
!!! ACTTTTGGTCTTAATTTTGG+AGG - chr5.4:3621211-3621230 MS.gene024712:CDS 30.0%
!!! ATTTTTTAGGATGGAAGAAC+TGG - chr5.4:3621724-3621743 MS.gene024712:CDS 30.0%
!!! CTTTTGGTCTTAATTTTGGA+GGG - chr5.4:3621212-3621231 MS.gene024712:CDS 30.0%
!!! TCCACTTTTGGTCTTAATTT+TGG - chr5.4:3621208-3621227 MS.gene024712:CDS 30.0%
!!! TTTTTTAGGATGGAAGAACT+GGG - chr5.4:3621725-3621744 MS.gene024712:CDS 30.0%
AAACATTAGCACCATTGAGT+TGG - chr5.4:3622129-3622148 MS.gene024712:intron 35.0%
AAGAGTCATTTAAAGGTGGA+TGG - chr5.4:3622017-3622036 MS.gene024712:intron 35.0%
AATAACACCTTCCAACTCAA+TGG + chr5.4:3622143-3622162 None:intergenic 35.0%
ACACAAGAGTCATTTAAAGG+TGG - chr5.4:3622013-3622032 MS.gene024712:intron 35.0%
ACGAGAATCTTATATCCGAA+GGG - chr5.4:3621273-3621292 MS.gene024712:CDS 35.0%
ATTCTCGTAGATCAATGTTC+CGG + chr5.4:3621261-3621280 None:intergenic 35.0%
CATCCATTGCAATGAAACAT+GGG + chr5.4:3621482-3621501 None:intergenic 35.0%
CATTTAAAGGTGGATGGTTT+AGG - chr5.4:3622023-3622042 MS.gene024712:intron 35.0%
CTCAAAATCAAGTTTCCCTT+CGG + chr5.4:3621291-3621310 None:intergenic 35.0%
GCAACACAAGAGTCATTTAA+AGG - chr5.4:3622010-3622029 MS.gene024712:intron 35.0%
TAAGACCAAAAGTGGAAGAT+TGG + chr5.4:3621204-3621223 None:intergenic 35.0%
TAAGCACAAAGTAACACACA+CGG - chr5.4:3621589-3621608 MS.gene024712:CDS 35.0%
TACGAGAATCTTATATCCGA+AGG - chr5.4:3621272-3621291 MS.gene024712:CDS 35.0%
TCCATCCTAAAAAATACGTC+CGG + chr5.4:3621719-3621738 None:intergenic 35.0%
TGACGGTTACATAGAACTTA+AGG - chr5.4:3622072-3622091 MS.gene024712:intron 35.0%
TGGCTATATACTACACCTTT+AGG + chr5.4:3621380-3621399 None:intergenic 35.0%
! AACTACCAATCTTCCACTTT+TGG - chr5.4:3621196-3621215 MS.gene024712:CDS 35.0%
! ATTGGATCCCATTCATCTTT+TGG + chr5.4:3621323-3621342 None:intergenic 35.0%
! TACAAAAAGGATTTTCGCGT+CGG + chr5.4:3621123-3621142 None:intergenic 35.0%
!!! ATTTTGGTGTTCCAATGTCA+GGG - chr5.4:3621033-3621052 MS.gene024712:CDS 35.0%
AAATGCAGCTCATACATTGC+TGG + chr5.4:3621017-3621036 None:intergenic 40.0%
AAGCACAAAGTAACACACAC+GGG - chr5.4:3621590-3621609 MS.gene024712:CDS 40.0%
AAGGAACAAACCACATCATG+AGG + chr5.4:3620603-3620622 None:intergenic 40.0%
AGTCTATGCCGGTGTATTTA+TGG - chr5.4:3621450-3621469 MS.gene024712:CDS 40.0%
ATCCTAAAAAATACGTCCGG+TGG + chr5.4:3621716-3621735 None:intergenic 40.0%
ATTTGTGTAGGTTGCTGTGT+TGG - chr5.4:3620980-3620999 MS.gene024712:CDS 40.0%
CAATGAGATGAAGTCTATGC+CGG - chr5.4:3621439-3621458 MS.gene024712:CDS 40.0%
CCATCCATTGCAATGAAACA+TGG + chr5.4:3621483-3621502 None:intergenic 40.0%
CCATGTTTCATTGCAATGGA+TGG - chr5.4:3621480-3621499 MS.gene024712:CDS 40.0%
CGAATCATGACGAGTATTCA+AGG + chr5.4:3621072-3621091 None:intergenic 40.0%
GCTTCTTCCATTTCTCAACT+CGG - chr5.4:3620570-3620589 MS.gene024712:CDS 40.0%
GGAACAACATCAAGTCCTAA+AGG - chr5.4:3621362-3621381 MS.gene024712:CDS 40.0%
GGAACACACCATAAATACAC+CGG + chr5.4:3621461-3621480 None:intergenic 40.0%
GGTGTAGTATATAGCCATAG+AGG - chr5.4:3621383-3621402 MS.gene024712:CDS 40.0%
GTGTGATACATCATGTGTCT+AGG + chr5.4:3620770-3620789 None:intergenic 40.0%
GTTCCCATGTTTCATTGCAA+TGG - chr5.4:3621476-3621495 MS.gene024712:CDS 40.0%
TACTCGTCATGATTCGTTGA+TGG - chr5.4:3621076-3621095 MS.gene024712:CDS 40.0%
TGATATCAGAAAGCCACTTC+CGG - chr5.4:3621655-3621674 MS.gene024712:CDS 40.0%
TGTGCGTTTGTGAAGTTGAA+GGG - chr5.4:3622232-3622251 MS.gene024712:intron 40.0%
TTCAACTTCACAAACGCACA+AGG + chr5.4:3622232-3622251 None:intergenic 40.0%
TTCCATGTGCAAATTGATCC+AGG + chr5.4:3621794-3621813 None:intergenic 40.0%
TTCTCGTAGATCAATGTTCC+GGG + chr5.4:3621260-3621279 None:intergenic 40.0%
TTGACAGAAACTTATGGTCC+TGG - chr5.4:3621773-3621792 MS.gene024712:CDS 40.0%
TTGTGCGTTTGTGAAGTTGA+AGG - chr5.4:3622231-3622250 MS.gene024712:intron 40.0%
TTTGCACATGGAAACCAGAA+TGG - chr5.4:3621801-3621820 MS.gene024712:CDS 40.0%
! AGAAACACCGAGTTGAGAAA+TGG + chr5.4:3620580-3620599 None:intergenic 40.0%
! AGGAGTACAACATATTGGAC+TGG - chr5.4:3621868-3621887 MS.gene024712:intron 40.0%
! CGAAGGGAAACTTGATTTTG+AGG - chr5.4:3621289-3621308 MS.gene024712:CDS 40.0%
! CGTCAAGGAGTACAACATAT+TGG - chr5.4:3621863-3621882 MS.gene024712:intron 40.0%
! GCAATGTATGAGCTGCATTT+TGG - chr5.4:3621017-3621036 MS.gene024712:CDS 40.0%
! GTACAACATATTGGACTGGA+AGG - chr5.4:3621872-3621891 MS.gene024712:intron 40.0%
! TCAGCAAACACGACAGTTTT+TGG + chr5.4:3622325-3622344 None:intergenic 40.0%
! TGTCACAATGAAGAGTGTAC+CGG - chr5.4:3621913-3621932 MS.gene024712:intron 40.0%
! TTGGGAGTAAAGCATTCTGA+CGG - chr5.4:3622055-3622074 MS.gene024712:intron 40.0%
!! AAAGCGTTTGCCTCGTTTTA+TGG - chr5.4:3622297-3622316 MS.gene024712:CDS 40.0%
!! ATTAGCACCATTGAGTTGGA+AGG - chr5.4:3622133-3622152 MS.gene024712:intron 40.0%
!!! ACCGGACGTATTTTTTAGGA+TGG - chr5.4:3621715-3621734 MS.gene024712:CDS 40.0%
!!! CATTTTGGTGTTCCAATGTC+AGG - chr5.4:3621032-3621051 MS.gene024712:CDS 40.0%
!!! GTTTTTGGAGCCATAAAACG+AGG + chr5.4:3622310-3622329 None:intergenic 40.0%
!!! TGTTTTGAAGGAGAAGGCAA+AGG - chr5.4:3622381-3622400 MS.gene024712:CDS 40.0%
!!! TTTTGGTGTTCCAATGTCAG+GGG - chr5.4:3621034-3621053 MS.gene024712:CDS 40.0%
AAGAAGCTGATTGGAGTGAG+AGG + chr5.4:3620453-3620472 None:intergenic 45.0%
AAGGAGAAGGCAAAGGCTAT+GGG - chr5.4:3622388-3622407 MS.gene024712:CDS 45.0%
AAGGTAGTAGTGATGACAGG+CGG - chr5.4:3621680-3621699 MS.gene024712:CDS 45.0%
ACAACGATGTCACCTACACA+TGG - chr5.4:3620517-3620536 MS.gene024712:CDS 45.0%
AGAACTTAAGGATCGGTCGA+AGG - chr5.4:3622084-3622103 MS.gene024712:intron 45.0%
AGCACAAAGTAACACACACG+GGG - chr5.4:3621591-3621610 MS.gene024712:CDS 45.0%
AGGGGAAACACTGTGATGAA+TGG - chr5.4:3621968-3621987 MS.gene024712:intron 45.0%
AGTGGCTTTCTGATATCAGG+TGG + chr5.4:3621653-3621672 None:intergenic 45.0%
ATATCAGAAAGCCACTTCCG+GGG - chr5.4:3621657-3621676 MS.gene024712:CDS 45.0%
ATGGGTGAGGTGATGTTTAG+GGG - chr5.4:3621950-3621969 MS.gene024712:intron 45.0%
CATGGGTGAGGTGATGTTTA+GGG - chr5.4:3621949-3621968 MS.gene024712:intron 45.0%
CGTTTGTGAAGTTGAAGGGA+GGG - chr5.4:3622236-3622255 MS.gene024712:intron 45.0%
CTAAAAAATACGTCCGGTGG+CGG + chr5.4:3621713-3621732 None:intergenic 45.0%
CTTGAGCAGCAATACTCCAA+GGG + chr5.4:3621511-3621530 None:intergenic 45.0%
GAACGTAGTTAGCGTTGCAT+TGG + chr5.4:3620431-3620450 None:intergenic 45.0%
GATATCAGAAAGCCACTTCC+GGG - chr5.4:3621656-3621675 MS.gene024712:CDS 45.0%
GATCTGCCAAAGACATCAAC+CGG - chr5.4:3622343-3622362 MS.gene024712:CDS 45.0%
GCGAAAAAGAAGTCACGTCA+AGG - chr5.4:3621848-3621867 MS.gene024712:CDS 45.0%
GGAAGTGGCTTTCTGATATC+AGG + chr5.4:3621656-3621675 None:intergenic 45.0%
GGTACACTCTTCATTGTGAC+AGG + chr5.4:3621914-3621933 None:intergenic 45.0%
GGTGACATCGTTGTAGATGA+TGG + chr5.4:3620511-3620530 None:intergenic 45.0%
GTCCTGGATCAATTTGCACA+TGG - chr5.4:3621789-3621808 MS.gene024712:CDS 45.0%
TAGTCATCCAGCAGTTGTTG+AGG - chr5.4:3622165-3622184 MS.gene024712:intron 45.0%
TCTCACTCCAATCAGCTTCT+TGG - chr5.4:3620452-3620471 MS.gene024712:CDS 45.0%
TGGGAGACCTGATGAGTATT+GGG - chr5.4:3622198-3622217 MS.gene024712:intron 45.0%
TTGGGAGACCTGATGAGTAT+TGG - chr5.4:3622197-3622216 MS.gene024712:intron 45.0%
TTGTTGAGGCAGCTGTTGTT+GGG - chr5.4:3622179-3622198 MS.gene024712:intron 45.0%
! AAAGGTGGATGGTTTAGGAC+TGG - chr5.4:3622028-3622047 MS.gene024712:intron 45.0%
! ATGAGTCTGAGACCATGTGT+AGG + chr5.4:3620532-3620551 None:intergenic 45.0%
! ATGGTTTAGGACTGGTGACT+TGG - chr5.4:3622036-3622055 MS.gene024712:intron 45.0%
! TGGTTTAGGACTGGTGACTT+GGG - chr5.4:3622037-3622056 MS.gene024712:intron 45.0%
AATGTTCCGGGAGAGACTGA+TGG + chr5.4:3621248-3621267 None:intergenic 50.0%
CACAAAGTAACACACACGGG+GGG - chr5.4:3621593-3621612 MS.gene024712:CDS 50.0%
CATAGAACAGCCCCTGACAT+TGG + chr5.4:3621047-3621066 None:intergenic 50.0%
CCATGGGTGAGGTGATGTTT+AGG - chr5.4:3621948-3621967 MS.gene024712:intron 50.0%
CCTAAACATCACCTCACCCA+TGG + chr5.4:3621951-3621970 None:intergenic 50.0%
CCTTGAGCAGCAATACTCCA+AGG + chr5.4:3621512-3621531 None:intergenic 50.0%
CGGTGTTTCTCCTCATGATG+TGG - chr5.4:3620590-3620609 MS.gene024712:CDS 50.0%
GAAGGAGAAGGCAAAGGCTA+TGG - chr5.4:3622387-3622406 MS.gene024712:CDS 50.0%
GCACAAAGTAACACACACGG+GGG - chr5.4:3621592-3621611 MS.gene024712:CDS 50.0%
GCGTTTGTGAAGTTGAAGGG+AGG - chr5.4:3622235-3622254 MS.gene024712:intron 50.0%
GGGAAGGTAGTAGTGATGAC+AGG - chr5.4:3621677-3621696 MS.gene024712:CDS 50.0%
GTATCCGACATGTGTCTGTC+TGG - chr5.4:3620744-3620763 MS.gene024712:CDS 50.0%
GTCATCACTACTACCTTCCC+CGG + chr5.4:3621677-3621696 None:intergenic 50.0%
GTCTCTCCCCAATACTCATC+AGG + chr5.4:3622208-3622227 None:intergenic 50.0%
GTTGTTGAGGCAGCTGTTGT+TGG - chr5.4:3622178-3622197 MS.gene024712:intron 50.0%
TAGGCCAGACAGACACATGT+CGG + chr5.4:3620751-3620770 None:intergenic 50.0%
TGATGCGAAAACCATGGGTG+AGG - chr5.4:3621937-3621956 MS.gene024712:intron 50.0%
! GGGAGACCTGATGAGTATTG+GGG - chr5.4:3622199-3622218 MS.gene024712:intron 50.0%
! GTCTTGCCGGTTGATGTCTT+TGG + chr5.4:3622352-3622371 None:intergenic 50.0%
!! CCTTGGAGTATTGCTGCTCA+AGG - chr5.4:3621509-3621528 MS.gene024712:CDS 50.0%
!! TGGAGTATTGCTGCTCAAGG+TGG - chr5.4:3621512-3621531 MS.gene024712:CDS 50.0%
!!! CGCCACCGGACGTATTTTTT+AGG - chr5.4:3621711-3621730 MS.gene024712:CDS 50.0%
ACAGCTGCCTCAACAACTGC+TGG + chr5.4:3622175-3622194 None:intergenic 55.0%
ACCGGCTGATGCGAAAACCA+TGG - chr5.4:3621931-3621950 MS.gene024712:intron 55.0%
ACTACTACCTTCCCCGGAAG+TGG + chr5.4:3621671-3621690 None:intergenic 55.0%
ATGGAGTAGCCTGTCTCGAG+AGG - chr5.4:3621820-3621839 MS.gene024712:CDS 55.0%
CCGGCTGATGCGAAAACCAT+GGG - chr5.4:3621932-3621951 MS.gene024712:intron 55.0%
CGAGACAGGCTACTCCATTC+TGG + chr5.4:3621818-3621837 None:intergenic 55.0%
GAGCGCTCCAAGAAGCTGAT+TGG + chr5.4:3620462-3620481 None:intergenic 55.0%
GCAATGGATGGTGTCTCCCT+TGG - chr5.4:3621492-3621511 MS.gene024712:CDS 55.0%
GCTCATCCATCAGTCTCTCC+CGG - chr5.4:3621239-3621258 MS.gene024712:CDS 55.0%
! AAAAATACGTCCGGTGGCGG+TGG + chr5.4:3621710-3621729 None:intergenic 55.0%
! CCCATGGTTTTCGCATCAGC+CGG + chr5.4:3621935-3621954 None:intergenic 55.0%
! GAAGGGAGGGCACAATGCTA+CGG - chr5.4:3622249-3622268 MS.gene024712:intron 55.0%
CAGAAAGCCACTTCCGGGGA+AGG - chr5.4:3621661-3621680 MS.gene024712:CDS 60.0%
TAGCCTGTCTCGAGAGGAGC+AGG - chr5.4:3621826-3621845 MS.gene024712:CDS 60.0%
TCGCCTGCTCCTCTCGAGAC+AGG + chr5.4:3621832-3621851 None:intergenic 65.0%
AGGCGGTGCTCCACCGCCAC+CGG - chr5.4:3621697-3621716 MS.gene024712:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 3620414 3622447 3620414 ID=MS.gene024712
chr5.4 mRNA 3620414 3622447 3620414 ID=MS.gene024712.t1;Parent=MS.gene024712
chr5.4 exon 3622250 3622447 3622250 ID=MS.gene024712.t1.exon1;Parent=MS.gene024712.t1
chr5.4 CDS 3622250 3622447 3622250 ID=cds.MS.gene024712.t1;Parent=MS.gene024712.t1
chr5.4 exon 3620414 3621871 3620414 ID=MS.gene024712.t1.exon2;Parent=MS.gene024712.t1
chr5.4 CDS 3620414 3621871 3620414 ID=cds.MS.gene024712.t1;Parent=MS.gene024712.t1
Gene Sequence

>MS.gene024712

ATGGAAGGTACTATCCAATGCAACGCTAACTACGTTCCTCTCACTCCAATCAGCTTCTTGGAGCGCTCCGCCATTGTTTACAGTAACAAAGTTTCCATCATCTACAACGATGTCACCTACACATGGTCTCAGACTCATCAACGATGTATCAAACTCGCTTCTTCCATTTCTCAACTCGGTGTTTCTCCTCATGATGTGGTTTGTTCCTTTTTCAAACAAATTCAAATTCAACATAGTTTAATTCTCCTTTAAATCTATAATCTAGCGATTTTTCAATTGGATTTGATTTTTTTTTTCTGTTAATTTTGGTTTTGATCGAAGGCGTGTTCAGTATCCGACATGTGTCTGTCTGGCCTAGACACATGATGTATCACACTAAATTATGTCATTTTTTAAAATAATTATTGATGTGTCCGAGTCTGTGCTTTATAATATCAATCAAACTACTTAGAATTTTGCATGGAACATGTAAATATGATTATAATTTTTGATTTTAGAAGAAATATGATTACAAGTTGGTTTGAAATTTCTTGTTGATGATTTGTGCTTGTTGTGAATTTGCACTTATTTGTGTAGGTTGCTGTGTTGGCTCCTAATATTCCAGCAATGTATGAGCTGCATTTTGGTGTTCCAATGTCAGGGGCTGTTCTATGTACCTTGAATACTCGTCATGATTCGTTGATGGTTTCGTTGTTGTTAAAGCATTCCGACGCGAAAATCCTTTTTGTAGATCATGAATTACTTGATATTGCTAAGGGAGCACTTGAAATTTTGTCGAAATCAACTACCAATCTTCCACTTTTGGTCTTAATTTTGGAGGGTGATGCTCATCCATCAGTCTCTCCCGGAACATTGATCTACGAGAATCTTATATCCGAAGGGAAACTTGATTTTGAGGTGAAAAGACCAAAAGATGAATGGGATCCAATTTCTTTGAATTACACTTCAGGAACAACATCAAGTCCTAAAGGTGTAGTATATAGCCATAGAGGTGCTTATCTTAATTCTTTGGCTACAATTCTTCTCAATGAGATGAAGTCTATGCCGGTGTATTTATGGTGTGTTCCCATGTTTCATTGCAATGGATGGTGTCTCCCTTGGAGTATTGCTGCTCAAGGTGGCACAAATGTTTGCCAAAGAAATGTAACTGCTAAAGGGATATTTGACAATATTTTTAAGCACAAAGTAACACACACGGGGGGTGCACCAACAGTTCTGAACTCATTAATAAATGCACCACCTGATATCAGAAAGCCACTTCCGGGGAAGGTAGTAGTGATGACAGGCGGTGCTCCACCGCCACCGGACGTATTTTTTAGGATGGAAGAACTGGGATTTGATTTAGTTCATTCATATGGTTTGACAGAAACTTATGGTCCTGGATCAATTTGCACATGGAAACCAGAATGGAGTAGCCTGTCTCGAGAGGAGCAGGCGAAAAAGAAGTCACGTCAAGGAGTACAACATATTGGACTGGAAGGACTTGACATAAAAGATCCTGTCACAATGAAGAGTGTACCGGCTGATGCGAAAACCATGGGTGAGGTGATGTTTAGGGGAAACACTGTGATGAATGGATATCTAAAGGATTTAAAAGCAACACAAGAGTCATTTAAAGGTGGATGGTTTAGGACTGGTGACTTGGGAGTAAAGCATTCTGACGGTTACATAGAACTTAAGGATCGGTCGAAGGATATTATCATATCTGGGGGAGAAAACATTAGCACCATTGAGTTGGAAGGTGTTATTTATAGTCATCCAGCAGTTGTTGAGGCAGCTGTTGTTGGGAGACCTGATGAGTATTGGGGAGAGACACCTTGTGCGTTTGTGAAGTTGAAGGGAGGGCACAATGCTACGGAAGAAGATATAATACAATTCTGTCAAAAGCGTTTGCCTCGTTTTATGGCTCCAAAAACTGTCGTGTTTGCTGATCTGCCAAAGACATCAACCGGCAAGACACAAAAATTTGTTTTGAAGGAGAAGGCAAAGGCTATGGGAAGCTTGTCTAAGAAAAAGAATACAAGCCGACTGTAA
Protein sequence

>MS.gene024712.t1

MEGTIQCNANYVPLTPISFLERSAIVYSNKVSIIYNDVTYTWSQTHQRCIKLASSISQLGVSPHDVVAVLAPNIPAMYELHFGVPMSGAVLCTLNTRHDSLMVSLLLKHSDAKILFVDHELLDIAKGALEILSKSTTNLPLLVLILEGDAHPSVSPGTLIYENLISEGKLDFEVKRPKDEWDPISLNYTSGTTSSPKGVVYSHRGAYLNSLATILLNEMKSMPVYLWCVPMFHCNGWCLPWSIAAQGGTNVCQRNVTAKGIFDNIFKHKVTHTGGAPTVLNSLINAPPDIRKPLPGKVVVMTGGAPPPPDVFFRMEELGFDLVHSYGLTETYGPGSICTWKPEWSSLSREEQAKKKSRQGVQHIGLEGLDIKDPVTMKSVPADAKTMGEVMFRGNTVMNGYLKDLKATQESFKGGWFRTGDLGVKHSDGYIELKDRSKDIIISGGENISTIELEGVIYSHPAVVEAAVVGRPDEYWGETPCAFVKLKGGHNATEEDIIQFCQKRLPRFMAPKTVVFADLPKTSTGKTQKFVLKEKAKAMGSLSKKKNTSRL