AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041843


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041843.t1 MTR_4g121600 98.230 565 10 0 2 566 1 565 0.0 1152
MS.gene041843.t1 MTR_2g044180 85.841 565 80 0 2 566 1 565 0.0 1029
MS.gene041843.t1 MTR_2g044180 86.076 474 66 0 93 566 1 474 0.0 861
MS.gene041843.t1 MTR_8g074040 50.622 563 267 4 3 565 38 589 0.0 606
MS.gene041843.t1 MTR_5g008800 52.269 551 250 4 16 566 9 546 0.0 596
MS.gene041843.t1 MTR_5g008820 47.292 554 277 3 13 566 6 544 0.0 575
MS.gene041843.t1 MTR_3g064420 51.434 558 256 8 8 557 1 551 0.0 571
MS.gene041843.t1 MTR_5g076240 48.404 564 270 8 8 563 1 551 0.0 543
MS.gene041843.t1 MTR_8g074120 51.318 493 221 5 74 562 20 497 0.0 535
MS.gene041843.t1 MTR_8g074040 51.452 482 223 4 84 565 1 471 0.0 533
MS.gene041843.t1 MTR_5g076200 46.691 559 286 7 8 562 1 551 5.33e-173 501
MS.gene041843.t1 MTR_5g076220 46.869 559 281 8 8 560 1 549 1.24e-172 501
MS.gene041843.t1 MTR_0161s0050 47.331 562 276 9 8 560 1 551 6.24e-168 489
MS.gene041843.t1 MTR_5g023730 42.143 560 301 10 6 560 3 544 4.22e-149 440
MS.gene041843.t1 MTR_0803s0020 27.955 533 338 12 26 548 240 736 7.21e-55 200
MS.gene041843.t1 MTR_8g039720 26.488 521 336 18 46 552 64 551 1.46e-38 149
MS.gene041843.t1 MTR_4g057730 25.939 559 354 20 17 557 23 539 4.75e-37 145
MS.gene041843.t1 MTR_2g095510 26.538 569 343 21 11 557 21 536 1.06e-36 144
MS.gene041843.t1 MTR_1569s0010 29.282 362 231 11 200 554 186 529 1.99e-34 137
MS.gene041843.t1 MTR_1g026310 24.008 529 358 12 46 566 67 559 4.05e-34 136
MS.gene041843.t1 MTR_3g460770 26.046 526 331 16 48 558 57 539 5.14e-34 136
MS.gene041843.t1 MTR_4g005750 26.515 528 326 17 47 555 53 537 7.64e-33 132
MS.gene041843.t1 MTR_1g063110 30.256 390 244 15 175 552 167 540 7.70e-33 132
MS.gene041843.t1 MTR_3g035130 23.389 543 369 14 19 552 3 507 1.80e-32 131
MS.gene041843.t1 MTR_5g027500 26.975 519 323 17 56 553 78 561 1.84e-32 132
MS.gene041843.t1 MTR_2g105570 26.226 530 331 19 47 555 54 544 6.35e-32 130
MS.gene041843.t1 MTR_5g027480 26.744 516 332 16 48 553 69 548 7.63e-32 130
MS.gene041843.t1 MTR_3g088880 25.237 527 319 20 46 552 77 548 3.83e-31 127
MS.gene041843.t1 MTR_4g077900 26.019 515 315 17 60 553 2 471 4.37e-31 126
MS.gene041843.t1 MTR_1g090737 26.790 377 246 11 191 557 207 563 3.16e-30 125
MS.gene041843.t1 MTR_1g073180 25.806 527 313 18 46 552 59 527 7.46e-29 120
MS.gene041843.t1 MTR_3g088870 24.859 531 319 21 46 552 76 550 7.71e-29 121
MS.gene041843.t1 MTR_5g007640 25.688 545 310 20 47 555 97 582 8.97e-29 121
MS.gene041843.t1 MTR_4g128337 26.071 537 345 17 37 558 47 546 6.10e-28 118
MS.gene041843.t1 MTR_1586s0010 27.548 363 234 12 56 409 79 421 1.23e-27 115
MS.gene041843.t1 MTR_1g063120 27.520 367 241 11 202 559 201 551 2.32e-27 116
MS.gene041843.t1 MTR_1054s0020 25.458 546 321 17 38 559 288 771 1.08e-26 115
MS.gene041843.t1 MTR_4g057730 24.742 485 311 18 17 484 23 470 4.90e-26 111
MS.gene041843.t1 MTR_3g035130 22.904 489 338 11 19 501 5 460 2.52e-25 109
MS.gene041843.t1 MTR_1g073180 25.000 476 286 14 46 503 81 503 7.88e-25 108
MS.gene041843.t1 MTR_2g030240 22.140 542 376 13 41 556 22 543 8.16e-25 108
MS.gene041843.t1 MTR_4g011790 27.368 380 228 16 202 553 233 592 1.93e-23 104
MS.gene041843.t1 MTR_4g068670 24.280 486 290 14 48 478 79 541 8.58e-23 103
MS.gene041843.t1 MTR_2g030240 24.873 394 262 11 186 556 67 449 2.00e-22 100
MS.gene041843.t1 MTR_4g011790 27.297 381 229 16 202 554 233 593 2.10e-22 101
MS.gene041843.t1 MTR_4g011790 26.923 390 226 15 202 553 233 601 5.55e-22 100
MS.gene041843.t1 MTR_4g057730 24.449 454 295 18 17 456 23 442 9.18e-22 98.6
MS.gene041843.t1 MTR_1g034360 23.156 488 294 12 48 478 80 543 2.07e-21 99.0
MS.gene041843.t1 MTR_2g095510 24.839 467 282 19 11 456 21 439 9.52e-21 95.5
MS.gene041843.t1 MTR_1g086600 22.833 600 340 19 48 559 100 664 1.30e-19 93.2
MS.gene041843.t1 MTR_7g109830 24.593 492 283 16 48 478 78 542 2.02e-18 89.4
MS.gene041843.t1 MTR_7g084850 25.871 402 253 14 187 564 352 732 3.11e-18 89.0
MS.gene041843.t1 MTR_4g013210 25.389 386 232 15 202 553 76 439 7.34e-18 86.7
MS.gene041843.t1 MTR_4g013210 29.560 159 104 4 403 553 240 398 9.72e-15 76.6
MS.gene041843.t1 MTR_4g013210 21.756 524 332 19 47 530 82 567 9.94e-15 77.4
MS.gene041843.t1 MTR_4g013210 29.560 159 104 4 403 553 392 550 1.16e-14 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041843.t1 AT3G16910 74.296 568 144 2 1 566 1 568 0.0 910
MS.gene041843.t1 AT2G17650 52.398 563 257 3 6 562 46 603 0.0 598
MS.gene041843.t1 AT1G20560 53.382 547 246 4 13 559 8 545 0.0 595
MS.gene041843.t1 AT5G16340 49.101 556 269 7 8 560 1 545 0.0 535
MS.gene041843.t1 AT5G16370 48.741 556 269 7 15 566 8 551 0.0 533
MS.gene041843.t1 AT1G65890 47.163 564 273 9 8 557 1 553 0.0 524
MS.gene041843.t1 AT1G20560 53.151 476 214 4 84 559 1 467 3.27e-179 514
MS.gene041843.t1 AT1G65880 45.633 561 287 6 8 557 1 554 3.42e-179 518
MS.gene041843.t1 AT1G21530 47.091 550 275 8 16 559 9 548 1.10e-178 516
MS.gene041843.t1 AT1G66120 46.536 563 275 8 8 559 1 548 1.28e-178 516
MS.gene041843.t1 AT1G21530 46.909 550 274 8 16 559 9 546 1.52e-176 510
MS.gene041843.t1 AT1G75960 47.387 555 278 6 8 559 1 544 3.50e-176 509
MS.gene041843.t1 AT1G21540 46.727 550 278 8 16 559 9 549 3.69e-174 504
MS.gene041843.t1 AT1G77240 46.545 550 278 7 14 559 7 544 6.23e-172 498
MS.gene041843.t1 AT1G76290 45.009 551 282 8 13 560 6 538 2.65e-162 474
MS.gene041843.t1 AT1G68270 40.320 563 283 9 8 557 1 523 2.25e-141 420
MS.gene041843.t1 AT3G48990 27.154 534 346 14 26 552 9 506 8.48e-40 152
MS.gene041843.t1 AT3G21240 26.376 527 329 18 47 555 64 549 5.00e-37 145
MS.gene041843.t1 AT1G62940 28.544 522 318 18 48 555 55 535 5.53e-37 144
MS.gene041843.t1 AT4G05160 26.344 558 363 18 11 557 21 541 2.04e-36 143
MS.gene041843.t1 AT1G20510 25.326 537 351 16 30 553 39 538 3.23e-35 139
MS.gene041843.t1 AT5G63380 25.819 519 328 16 46 552 77 550 7.28e-34 135
MS.gene041843.t1 AT3G21230 27.788 529 329 16 48 559 75 567 4.33e-31 127
MS.gene041843.t1 AT4G19010 25.752 532 316 18 50 553 75 555 5.94e-30 124
MS.gene041843.t1 AT1G65060 25.430 523 337 15 47 555 76 559 3.73e-29 122
MS.gene041843.t1 AT1G20500 24.046 524 348 17 48 559 65 550 8.87e-29 120
MS.gene041843.t1 AT3G21240 25.275 455 289 15 47 485 64 483 1.09e-28 120
MS.gene041843.t1 AT3G21240 25.275 455 289 15 47 485 64 483 1.09e-28 120
MS.gene041843.t1 AT1G51680 25.824 546 337 18 36 555 53 556 5.91e-28 118
MS.gene041843.t1 AT1G20510 24.893 466 307 13 30 484 39 472 1.69e-27 116
MS.gene041843.t1 AT1G20480 23.327 523 343 12 58 566 86 564 8.23e-27 115
MS.gene041843.t1 AT3G21230 27.869 488 299 15 48 519 75 525 9.00e-27 114
MS.gene041843.t1 AT1G51680 25.737 509 310 17 36 519 53 518 5.96e-24 106
MS.gene041843.t1 AT5G38120 25.641 507 313 22 66 553 83 544 1.89e-23 104
MS.gene041843.t1 AT1G20510 24.886 438 286 13 30 456 39 444 2.21e-23 103
MS.gene041843.t1 AT3G21230 27.093 454 284 14 48 485 75 497 1.43e-22 101
MS.gene041843.t1 AT5G38120 25.636 472 291 20 66 519 83 512 8.63e-21 96.3
MS.gene041843.t1 AT5G36880 23.077 559 358 17 48 564 149 677 5.75e-20 94.4
MS.gene041843.t1 AT5G36880 23.077 559 358 17 48 564 149 677 5.75e-20 94.4
MS.gene041843.t1 AT5G36880 23.077 559 358 17 48 564 149 677 5.75e-20 94.4
MS.gene041843.t1 AT5G36880 23.077 559 358 17 48 564 149 677 5.75e-20 94.4
MS.gene041843.t1 AT5G36880 23.077 559 358 17 48 564 199 727 5.95e-20 94.4
MS.gene041843.t1 AT1G51680 25.053 475 294 16 36 485 53 490 2.69e-19 91.7
MS.gene041843.t1 AT1G65060 24.466 421 275 12 47 456 76 464 1.13e-17 86.7
MS.gene041843.t1 AT3G16170 23.684 380 243 12 202 553 241 601 2.82e-17 85.9
MS.gene041843.t1 AT5G38120 24.828 435 272 18 66 484 83 478 1.18e-15 80.1
MS.gene041843.t1 AT5G38120 24.828 435 272 18 66 484 83 478 1.18e-15 80.1

Find 0 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTCTTAAATTATTAA+CGG - 32459:10276-10295 None:intergenic 10.0%
!! ATTATATTAATCAATGCATT+AGG - 32459:11315-11334 None:intergenic 15.0%
!! AAAAAATTCATCATCTACTA+CGG - 32459:10076-10095 None:intergenic 20.0%
!! TTAATTTCTATATATCCATC+TGG - 32459:12156-12175 None:intergenic 20.0%
!!! ATAATGTAATTTTCTTATGC+AGG + 32459:10455-10474 MS.gene041843:intron 20.0%
!!! TGATTAGAGAAAACATTTTT+CGG - 32459:9888-9907 None:intergenic 20.0%
! AGAAATTAAAGACAGATCAA+AGG + 32459:12167-12186 MS.gene041843:CDS 25.0%
! TAACTCAATAATTAATGCTC+CGG + 32459:11711-11730 MS.gene041843:CDS 25.0%
! TATTTAATTGCAATCAACCA+AGG + 32459:10013-10032 MS.gene041843:intron 25.0%
! TCACCAATGACAATTAAAAT+TGG - 32459:10705-10724 None:intergenic 25.0%
!! AAATGTTTTCTCTAATCAGA+TGG + 32459:9890-9909 MS.gene041843:intron 25.0%
!!! GTTTTTTTTCTTCCTTCATT+CGG + 32459:9843-9862 MS.gene041843:intron 25.0%
!!! TCTCCAATTTTAATTGTCAT+TGG + 32459:10699-10718 MS.gene041843:CDS 25.0%
AATCTGATTAAGAGAGATGA+TGG - 32459:9926-9945 None:intergenic 30.0%
AGGTAAAACTAATGTCTGAT+GGG + 32459:11063-11082 MS.gene041843:intron 30.0%
ATCTGATTAAGAGAGATGAT+GGG - 32459:9925-9944 None:intergenic 30.0%
GACAAAAAATCTATGAAGCA+CGG + 32459:10210-10229 MS.gene041843:intron 30.0%
GCATTTAGTCTAATATTCAC+AGG - 32459:10558-10577 None:intergenic 30.0%
TCTCTCATGAAACAATGATT+GGG + 32459:11418-11437 MS.gene041843:intron 30.0%
! AATTGGAGACTTGAATGTTT+TGG - 32459:10688-10707 None:intergenic 30.0%
! AGTCACTTTGTACTTAACAA+TGG - 32459:11665-11684 None:intergenic 30.0%
!! ATCTTTAGGTAGTTTGTTGT+TGG + 32459:11514-11533 MS.gene041843:intron 30.0%
!! CAGAAGAAGCATTGAAAATA+TGG + 32459:10652-10671 MS.gene041843:CDS 30.0%
!! TAAGAACCATAAAGGTGTTA+AGG - 32459:9666-9685 None:intergenic 30.0%
!! TTTGCTTGATGTTTTTATGC+AGG + 32459:11615-11634 MS.gene041843:intron 30.0%
AAAGATGACAGGATTAATCC+TGG - 32459:11500-11519 None:intergenic 35.0%
AAATCTATGAAGCACGGATA+CGG + 32459:10216-10235 MS.gene041843:intron 35.0%
AAGCGTTCAAATAAACGCAT+AGG - 32459:11102-11121 None:intergenic 35.0%
AATCACATCCCAGAAAATAG+TGG - 32459:11279-11298 None:intergenic 35.0%
AATGAAGAGAGCTTTGCAAA+TGG + 32459:12096-12115 MS.gene041843:CDS 35.0%
AATGCATATCGAAGTGACTT+AGG - 32459:10741-10760 None:intergenic 35.0%
ACAAACTACCTAAAGATGAC+AGG - 32459:11511-11530 None:intergenic 35.0%
ACACATCCTTAACACCTTTA+TGG + 32459:9657-9676 MS.gene041843:CDS 35.0%
ACCAAGAAGAAATGCTATTG+TGG - 32459:10583-10602 None:intergenic 35.0%
ATGAAGGAGCTGTATATCTT+TGG + 32459:10958-10977 MS.gene041843:CDS 35.0%
ATGCATATCGAAGTGACTTA+GGG - 32459:10740-10759 None:intergenic 35.0%
ATTATTGAGTTAAGCACCAC+TGG - 32459:11703-11722 None:intergenic 35.0%
CAACCATTGCAATGAAACAT+GGG - 32459:10990-11009 None:intergenic 35.0%
CAGGTAAAACTAATGTCTGA+TGG + 32459:11062-11081 MS.gene041843:intron 35.0%
CTCTCATGAAACAATGATTG+GGG + 32459:11419-11438 MS.gene041843:intron 35.0%
CTTATTTGGGGAATGAATGA+AGG + 32459:10942-10961 MS.gene041843:CDS 35.0%
GGATTAATCCTGTCATCTTT+AGG + 32459:11500-11519 MS.gene041843:intron 35.0%
GTATTCACATGTACAACATG+AGG - 32459:11760-11779 None:intergenic 35.0%
GTCTCTCATGAAACAATGAT+TGG + 32459:11417-11436 MS.gene041843:intron 35.0%
TCATAGAGAGCTGGAATATT+GGG - 32459:10495-10514 None:intergenic 35.0%
TCCACAATAGCATTTCTTCT+TGG + 32459:10579-10598 MS.gene041843:CDS 35.0%
TCTTAGTGGTGCACTTATTT+GGG + 32459:10929-10948 MS.gene041843:CDS 35.0%
TGAAAATATCAGCAGTGTAG+AGG + 32459:12209-12228 MS.gene041843:CDS 35.0%
TTCATAGAGAGCTGGAATAT+TGG - 32459:10496-10515 None:intergenic 35.0%
TTCGATATGCATTGAGCAAA+GGG + 32459:10748-10767 MS.gene041843:CDS 35.0%
! CGAACAAACCACTATTTTCT+GGG + 32459:11268-11287 MS.gene041843:intron 35.0%
! GCTCTTTCTAAGAACCATAA+AGG - 32459:9674-9693 None:intergenic 35.0%
! TCGAACAAACCACTATTTTC+TGG + 32459:11267-11286 MS.gene041843:intron 35.0%
! TTTTCTTCCTTCATTCGGTT+GGG + 32459:9848-9867 MS.gene041843:intron 35.0%
! TTTTTCTTCCTTCATTCGGT+TGG + 32459:9847-9866 MS.gene041843:intron 35.0%
!! AAACTAATGTCTGATGGGTT+TGG + 32459:11068-11087 MS.gene041843:intron 35.0%
!! AAGCTCTCTTCATTAGCTTT+AGG - 32459:12090-12109 None:intergenic 35.0%
!! AGCTCTCTTCATTAGCTTTA+GGG - 32459:12089-12108 None:intergenic 35.0%
!! TGACTTGTTATGCTTATCCA+GGG + 32459:11137-11156 MS.gene041843:intron 35.0%
!! TTGACTTGTTATGCTTATCC+AGG + 32459:11136-11155 MS.gene041843:intron 35.0%
!!! CATCAGACATTAGTTTTACC+TGG - 32459:11064-11083 None:intergenic 35.0%
AAATGAGCTTCATAGAGAGC+TGG - 32459:10504-10523 None:intergenic 40.0%
AACATGAGGTAGAGGAAGTA+TGG - 32459:11746-11765 None:intergenic 40.0%
AAGAGAGCTTTGCAAATGGA+TGG + 32459:12100-12119 MS.gene041843:CDS 40.0%
AATAATTAATGCTCCGGCTG+AGG + 32459:11717-11736 MS.gene041843:CDS 40.0%
AATTATATCGTGTCCGACAC+CGG + 32459:10309-10328 MS.gene041843:intron 40.0%
ACATGTACAACATGAGGTAG+AGG - 32459:11754-11773 None:intergenic 40.0%
ACCAGAAAATCCATCATCCA+TGG + 32459:9710-9729 MS.gene041843:CDS 40.0%
AGGATATACTGAAGTTCTGC+AGG + 32459:12373-12392 MS.gene041843:CDS 40.0%
AGGTACAGAAACATCTGTTG+AGG + 32459:12466-12485 MS.gene041843:CDS 40.0%
CACTGCATCAGTTGTAATTG+TGG + 32459:10608-10627 MS.gene041843:CDS 40.0%
CCAACCATTGCAATGAAACA+TGG - 32459:10991-11010 None:intergenic 40.0%
CCATGTTTCATTGCAATGGT+TGG + 32459:10988-11007 MS.gene041843:CDS 40.0%
CTACCCATGTTTCATTGCAA+TGG + 32459:10984-11003 MS.gene041843:CDS 40.0%
CTCTCTATGAAGCTCATTTC+GGG + 32459:10505-10524 MS.gene041843:CDS 40.0%
CTCTTAGTGGTGCACTTATT+TGG + 32459:10928-10947 MS.gene041843:CDS 40.0%
CTTAGTGGTGCACTTATTTG+GGG + 32459:10930-10949 MS.gene041843:CDS 40.0%
CTTCGATATGCATTGAGCAA+AGG + 32459:10747-10766 MS.gene041843:CDS 40.0%
GCAAATGGATGGTATCATTC+CGG + 32459:12111-12130 MS.gene041843:CDS 40.0%
GCATATCTCATGTCTCTTAG+TGG + 32459:10915-10934 MS.gene041843:CDS 40.0%
GCTCTCTATGAAGCTCATTT+CGG + 32459:10504-10523 MS.gene041843:CDS 40.0%
GGATATACTGAAGTTCTGCA+GGG + 32459:12374-12393 MS.gene041843:CDS 40.0%
GGATCAAGAGTTCTTTCCAT+TGG + 32459:10629-10648 MS.gene041843:CDS 40.0%
GGTACAGAAACATCTGTTGA+GGG + 32459:12467-12486 MS.gene041843:CDS 40.0%
GTGGCTTCCAATCGTATTTA+GGG - 32459:10809-10828 None:intergenic 40.0%
GTTAAGTACATTGCCTTGGA+AGG + 32459:11955-11974 MS.gene041843:CDS 40.0%
GTTGTACATGTGAATACTGC+TGG + 32459:11763-11782 MS.gene041843:CDS 40.0%
TACGAAGACTTTCTTCGAAG+TGG + 32459:10780-10799 MS.gene041843:CDS 40.0%
TCAAAGGACATCATCATCTC+AGG + 32459:12183-12202 MS.gene041843:CDS 40.0%
TCCTGCTATACTTGAGACAT+CGG + 32459:12254-12273 MS.gene041843:CDS 40.0%
TCGATATGCATTGAGCAAAG+GGG + 32459:10749-10768 MS.gene041843:CDS 40.0%
TTCAATGCTTCTTCTGCCAA+TGG - 32459:10648-10667 None:intergenic 40.0%
TTTCGTGTCACACACACTTA+CGG + 32459:11832-11851 MS.gene041843:CDS 40.0%
! CACTTGTGATACTTTTGACC+AGG + 32459:11479-11498 MS.gene041843:intron 40.0%
! TGATGCAAAACCACACCTTT+TGG - 32459:10888-10907 None:intergenic 40.0%
!! TGCTTATTGGGTACCGAAAT+CGG + 32459:12407-12426 MS.gene041843:CDS 40.0%
!!! CAGACATTAGTTTTACCTGG+CGG - 32459:11061-11080 None:intergenic 40.0%
!!! TCCATGGATGATGGATTTTC+TGG - 32459:9714-9733 None:intergenic 40.0%
!!! TGGATGATGGATTTTCTGGT+TGG - 32459:9710-9729 None:intergenic 40.0%
AAATCCTCGTTCAGACATGC+CGG - 32459:11815-11834 None:intergenic 45.0%
ACCGATGTCTCAAGTATAGC+AGG - 32459:12258-12277 None:intergenic 45.0%
ACTTAACCCCTTGTCTTGCA+TGG - 32459:11942-11961 None:intergenic 45.0%
AGCTCATTTCGGGATTCCAA+TGG + 32459:10515-10534 MS.gene041843:CDS 45.0%
AGGGGTTAAGTACATTGCCT+TGG + 32459:11951-11970 MS.gene041843:CDS 45.0%
ATGCTTTACCGCAAGATCAC+CGG - 32459:12133-12152 None:intergenic 45.0%
ATTATATCGTGTCCGACACC+GGG + 32459:10310-10329 MS.gene041843:intron 45.0%
ATTTCGGGATTCCAATGGCA+GGG + 32459:10520-10539 MS.gene041843:CDS 45.0%
CAATCAACCAAGGATGCTGA+CGG + 32459:10023-10042 MS.gene041843:intron 45.0%
CACACACACTTACGGTCTTT+CGG + 32459:11840-11859 MS.gene041843:CDS 45.0%
CCAGTAGCTGTCTTAGGTAA+CGG - 32459:12444-12463 None:intergenic 45.0%
CGTTACCTAAGACAGCTACT+GGG + 32459:12442-12461 MS.gene041843:CDS 45.0%
CTACTAACCCAACCGAATGA+AGG - 32459:9858-9877 None:intergenic 45.0%
GAAACATCTGTTGAGGGCTA+AGG + 32459:12473-12492 MS.gene041843:CDS 45.0%
GAGACATGAGATATGCTCCA+CGG - 32459:10911-10930 None:intergenic 45.0%
GATTTCGGTACCCAATAAGC+AGG - 32459:12408-12427 None:intergenic 45.0%
GGTGGCTTCCAATCGTATTT+AGG - 32459:10810-10829 None:intergenic 45.0%
GTACCGAAATCGGTTGTCTT+TGG + 32459:12417-12436 MS.gene041843:CDS 45.0%
GTATCATTCCGGTGATCTTG+CGG + 32459:12122-12141 MS.gene041843:CDS 45.0%
GTGGTGACCCTAAATACGAT+TGG + 32459:10799-10818 MS.gene041843:CDS 45.0%
GTTCTTAGAAAGAGCAGCTC+AGG + 32459:9679-9698 MS.gene041843:CDS 45.0%
TACCCAATAAGCAGGCATCT+TGG - 32459:12400-12419 None:intergenic 45.0%
TACGGTCTTTCGGAAACCTA+TGG + 32459:11850-11869 MS.gene041843:CDS 45.0%
TCGTTACTACTATCCACTCC+TGG - 32459:12339-12358 None:intergenic 45.0%
TCTTCGAATAAGCCATGTCC+CGG - 32459:10331-10350 None:intergenic 45.0%
TGCTATACTTGAGACATCGG+TGG + 32459:12257-12276 MS.gene041843:CDS 45.0%
TGGTTTCCAGGCACAATAGA+CGG - 32459:11881-11900 None:intergenic 45.0%
TTGATGCCAGGTGTAGTGAA+GGG - 32459:9738-9757 None:intergenic 45.0%
TTTAACGTCACGAACGCACA+CGG - 32459:12315-12334 None:intergenic 45.0%
TTTGATGCCAGGTGTAGTGA+AGG - 32459:9739-9758 None:intergenic 45.0%
! ATTGCTCTGGGTTACACATC+TGG + 32459:10849-10868 MS.gene041843:CDS 45.0%
! CGTGGTAATGCTGTCATGAA+AGG + 32459:12051-12070 MS.gene041843:CDS 45.0%
! GATCAAATTTTGCTACGCCC+TGG - 32459:11157-11176 None:intergenic 45.0%
! GCGTTGATAAGTTTGATGCC+AGG - 32459:9750-9769 None:intergenic 45.0%
! GGTCCAAAGACAACCGATTT+CGG - 32459:12423-12442 None:intergenic 45.0%
! TTTTCATCCGTCAGCATCCT+TGG - 32459:10033-10052 None:intergenic 45.0%
!! CTTCATTCGGTTGGGTTAGT+AGG + 32459:9856-9875 MS.gene041843:intron 45.0%
!! GCAATGGTTGGTGCTATACT+TGG + 32459:11000-11019 MS.gene041843:CDS 45.0%
!! TCATTTTTGTGCAGCACCAG+TGG + 32459:11684-11703 MS.gene041843:CDS 45.0%
!!! ACATTAGTTTTACCTGGCGG+AGG - 32459:11058-11077 None:intergenic 45.0%
AAAGAGCGGAAGCGAAACGA+CGG - 32459:9775-9794 None:intergenic 50.0%
AATAAGCCATGTCCCGGTGT+CGG - 32459:10325-10344 None:intergenic 50.0%
ACAATAGACGGATGGGCCAT+AGG - 32459:11869-11888 None:intergenic 50.0%
ACCTAAGACAGCTACTGGGA+AGG + 32459:12446-12465 MS.gene041843:CDS 50.0%
ACCTTCCCAGTAGCTGTCTT+AGG - 32459:12450-12469 None:intergenic 50.0%
AGACGACCTTCCAAAGAACG+CGG + 32459:9628-9647 MS.gene041843:CDS 50.0%
AGGGCTAAGGCAAAGGAGAT+GGG + 32459:12486-12505 MS.gene041843:CDS 50.0%
AGGTGTAGTGAAGGGATCCA+TGG - 32459:9730-9749 None:intergenic 50.0%
AGTTTGCCGCGTTCTTTGGA+AGG - 32459:9637-9656 None:intergenic 50.0%
ATACGATTGGAAGCCACCAG+AGG + 32459:10812-10831 MS.gene041843:CDS 50.0%
ATGCAACCTGTACCTGCTGA+CGG + 32459:12003-12022 MS.gene041843:CDS 50.0%
ATGCCGGAAAGAACAGAAGG+AGG - 32459:11799-11818 None:intergenic 50.0%
ATGGATCCCTTCACTACACC+TGG + 32459:9729-9748 MS.gene041843:CDS 50.0%
ATTGTGCCTGGAAACCAGAG+TGG + 32459:11884-11903 MS.gene041843:CDS 50.0%
CACAACATCCAAGCCTTCCA+AGG - 32459:11971-11990 None:intergenic 50.0%
CACTGCTAGTCCAAAAGGTG+TGG + 32459:10875-10894 MS.gene041843:CDS 50.0%
CATTTCGGGATTCCAATGGC+AGG + 32459:10519-10538 MS.gene041843:CDS 50.0%
CCGTTACCTAAGACAGCTAC+TGG + 32459:12441-12460 MS.gene041843:CDS 50.0%
CCTCCTCCTTCTGTTCTTTC+CGG + 32459:11793-11812 MS.gene041843:CDS 50.0%
CCTGCTGACGGTAAAACTGT+TGG + 32459:12015-12034 MS.gene041843:CDS 50.0%
CGCTAGACCAGACGAGAAAT+GGG + 32459:12281-12300 MS.gene041843:CDS 50.0%
GACATGCCGGAAAGAACAGA+AGG - 32459:11802-11821 None:intergenic 50.0%
GATGGAGTGGTTGGAAAGAG+CGG - 32459:9789-9808 None:intergenic 50.0%
GCTAGACCAGACGAGAAATG+GGG + 32459:12282-12301 MS.gene041843:CDS 50.0%
GCTCTTTCCAACCACTCCAT+CGG + 32459:9788-9807 MS.gene041843:CDS 50.0%
GGAACCACTGCTAGTCCAAA+AGG + 32459:10870-10889 MS.gene041843:CDS 50.0%
GGCCAAGATGCCTGCTTATT+GGG + 32459:12395-12414 MS.gene041843:CDS 50.0%
GTACATTGCCTTGGAAGGCT+TGG + 32459:11960-11979 MS.gene041843:CDS 50.0%
GTGAAGGGATCCATGGATGA+TGG - 32459:9723-9742 None:intergenic 50.0%
TACAGTGTTTCCGAGACCGA+TGG - 32459:9807-9826 None:intergenic 50.0%
TCCAGGCACAATAGACGGAT+GGG - 32459:11876-11895 None:intergenic 50.0%
TCGCTAGACCAGACGAGAAA+TGG + 32459:12280-12299 MS.gene041843:CDS 50.0%
TCTGTTGAGGGCTAAGGCAA+AGG + 32459:12479-12498 MS.gene041843:CDS 50.0%
TGGACACTTGCAGCTCTCTT+TGG + 32459:11020-11039 MS.gene041843:CDS 50.0%
TTCCAGGCACAATAGACGGA+TGG - 32459:11877-11896 None:intergenic 50.0%
TTGTGCCTGGAAACCAGAGT+GGG + 32459:11885-11904 MS.gene041843:CDS 50.0%
TTTATCACTGCCCCTGCCAT+TGG - 32459:10534-10553 None:intergenic 50.0%
TTTCGGGATTCCAATGGCAG+GGG + 32459:10521-10540 MS.gene041843:CDS 50.0%
! CCAACAGTTTTACCGTCAGC+AGG - 32459:12018-12037 None:intergenic 50.0%
! CTTGCGGTAAAGCATCCAGA+TGG + 32459:12138-12157 MS.gene041843:CDS 50.0%
! GGAAGTATGGTTTCCTCAGC+CGG - 32459:11733-11752 None:intergenic 50.0%
! GTGTAGTTTGCCGCGTTCTT+TGG - 32459:9641-9660 None:intergenic 50.0%
! GTTTTACCGTCAGCAGGTAC+AGG - 32459:12012-12031 None:intergenic 50.0%
!!! CACACCTTTTGGACTAGCAG+TGG - 32459:10877-10896 None:intergenic 50.0%
ATGCTCTGCCACTCATCCTC+TGG - 32459:10831-10850 None:intergenic 55.0%
CACAAACATATGCCTCCGCC+AGG + 32459:11043-11062 MS.gene041843:CDS 55.0%
CCGGAAAGAACAGAAGGAGG+AGG - 32459:11796-11815 None:intergenic 55.0%
CGTGACGTTAAAGCCAGGAG+TGG + 32459:12323-12342 MS.gene041843:CDS 55.0%
CTTTCCGGCATGTCTGAACG+AGG + 32459:11808-11827 MS.gene041843:CDS 55.0%
GAGGGCTAAGGCAAAGGAGA+TGG + 32459:12485-12504 MS.gene041843:CDS 55.0%
GCGTTCGTGACGTTAAAGCC+AGG + 32459:12318-12337 MS.gene041843:CDS 55.0%
GGGCCAAGATGCCTGCTTAT+TGG + 32459:12394-12413 MS.gene041843:CDS 55.0%
GGGCTAAGGCAAAGGAGATG+GGG + 32459:12487-12506 MS.gene041843:CDS 55.0%
GTTGGCGAAATCGTGATGCG+TGG + 32459:12033-12052 MS.gene041843:CDS 55.0%
TAACGAGCAGCGTCTAGTCG+AGG + 32459:12353-12372 MS.gene041843:CDS 55.0%
TCCAACCACTCCATCGGTCT+CGG + 32459:9794-9813 MS.gene041843:CDS 55.0%
TGTTTCCGAGACCGATGGAG+TGG - 32459:9802-9821 None:intergenic 55.0%
TTCCACCAGAATCTCGTGCC+CGG + 32459:11914-11933 MS.gene041843:CDS 55.0%
! TGAGTCCCACTCTGGTTTCC+AGG - 32459:11893-11912 None:intergenic 55.0%
!! GAGTGGCAGAGCATTGCTCT+GGG + 32459:10837-10856 MS.gene041843:CDS 55.0%
!! GGTGTGGTTTTGCATCACCG+TGG + 32459:10891-10910 MS.gene041843:CDS 55.0%
!! TGAGTGGCAGAGCATTGCTC+TGG + 32459:10836-10855 MS.gene041843:CDS 55.0%
CCCCTTGTCTTGCATGGAGC+CGG - 32459:11936-11955 None:intergenic 60.0%
CCCGGCTCCATGCAAGACAA+GGG + 32459:11932-11951 MS.gene041843:CDS 60.0%
CCCTTGTCTTGCATGGAGCC+GGG - 32459:11935-11954 None:intergenic 60.0%
CCGGCTCCATGCAAGACAAG+GGG + 32459:11933-11952 MS.gene041843:CDS 60.0%
CTCTGCCACTCATCCTCTGG+TGG - 32459:10828-10847 None:intergenic 60.0%
GACTCGCCCCATTTCTCGTC+TGG - 32459:12291-12310 None:intergenic 60.0%
GCCCATCCGTCTATTGTGCC+TGG + 32459:11872-11891 MS.gene041843:CDS 60.0%
GGAAGCCACCAGAGGATGAG+TGG + 32459:10820-10839 MS.gene041843:CDS 60.0%
GGTGGAAGTGAGTCCCACTC+TGG - 32459:11901-11920 None:intergenic 60.0%
TCCGAGACCGATGGAGTGGT+TGG - 32459:9798-9817 None:intergenic 60.0%
AGCCGGGCACGAGATTCTGG+TGG - 32459:11919-11938 None:intergenic 65.0%
GCCCGGCTCCATGCAAGACA+AGG + 32459:11931-11950 MS.gene041843:CDS 65.0%
TCGTGTCCGACACCGGGACA+TGG + 32459:10316-10335 MS.gene041843:intron 65.0%
TGGAGCCGGGCACGAGATTC+TGG - 32459:11922-11941 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
32459 gene 9605 12529 9605 ID=MS.gene041843
32459 mRNA 9605 12529 9605 ID=MS.gene041843.t1;Parent=MS.gene041843
32459 exon 9605 9823 9605 ID=MS.gene041843.t1.exon1;Parent=MS.gene041843.t1
32459 CDS 9605 9823 9605 ID=cds.MS.gene041843.t1;Parent=MS.gene041843.t1
32459 exon 10477 11064 10477 ID=MS.gene041843.t1.exon2;Parent=MS.gene041843.t1
32459 CDS 10477 11064 10477 ID=cds.MS.gene041843.t1;Parent=MS.gene041843.t1
32459 exon 11637 12529 11637 ID=MS.gene041843.t1.exon3;Parent=MS.gene041843.t1
32459 CDS 11637 12529 11637 ID=cds.MS.gene041843.t1;Parent=MS.gene041843.t1
Gene Sequence

>MS.gene041843

ATGATGGGTACGAAACAAGATATAGACGACCTTCCAAAGAACGCGGCAAACTACACATCCTTAACACCTTTATGGTTCTTAGAAAGAGCAGCTCAGGTTCATCCAACCAGAAAATCCATCATCCATGGATCCCTTCACTACACCTGGCATCAAACTTATCAACGCTGCCGTCGTTTCGCTTCCGCTCTTTCCAACCACTCCATCGGTCTCGGAAACACTGTAAGAACTTCGTATTTGAGTTTTTTTTCTTCCTTCATTCGGTTGGGTTAGTAGGATTGCTCCGAAAAATGTTTTCTCTAATCAGATGGATTATTGTTCCCATCATCTCTCTTAATCAGATTTGACTTATGTTTAATCGCTAATCTTAATTTGTCTTTTTTTAATAATAACGTTATTTCATGATAACTTTATTTAATTGCAATCAACCAAGGATGCTGACGGATGAAAATGAATGAACTTTTCTTTTTACCGTAGTAGATGATGAATTTTTTTAAGACACAGACAGTTTTTTATTTGAATTATTATTTTCGTCATCTAAAATTATACTATAAACTATATTCTGAAGTTTTTTAATTTTATAAACATTTTTATGTATGATACAAAATGACAAAAAATCTATGAAGCACGGATACGGACACGACACAGACACTAACACTAACACGCTGACACCGTTAATAATTTAAGAAAATCATATAATTCAATGTAATTATATCGTGTCCGACACCGGGACATGGCTTATTCGAAGAGTGTCTGTGCTTCATAGCAAAAAATAGTTTTCAATCATTCTCTACTCTAATTATGCGTTTAGCTTAATCATGTTCACTCTAATTCAGTTTTCAAGTACTAATTTATAATGTAATTTTCTTATGCAGGTAGCTGTTATTGCACCCAATATTCCAGCTCTCTATGAAGCTCATTTCGGGATTCCAATGGCAGGGGCAGTGATAAATCCTGTGAATATTAGACTAAATGCATCCACAATAGCATTTCTTCTTGGTCATTGCACTGCATCAGTTGTAATTGTGGATCAAGAGTTCTTTCCATTGGCAGAAGAAGCATTGAAAATATGGTCTGAGAAAACCAAAACATTCAAGTCTCCAATTTTAATTGTCATTGGTGATGAAAATTGCGACCCTAAGTCACTTCGATATGCATTGAGCAAAGGGGCAGTTGAATACGAAGACTTTCTTCGAAGTGGTGACCCTAAATACGATTGGAAGCCACCAGAGGATGAGTGGCAGAGCATTGCTCTGGGTTACACATCTGGAACCACTGCTAGTCCAAAAGGTGTGGTTTTGCATCACCGTGGAGCATATCTCATGTCTCTTAGTGGTGCACTTATTTGGGGAATGAATGAAGGAGCTGTATATCTTTGGACTCTACCCATGTTTCATTGCAATGGTTGGTGCTATACTTGGACACTTGCAGCTCTCTTTGGCACAAACATATGCCTCCGCCAGGTAAAACTAATGTCTGATGGGTTTGGTTTCTTTTCCTATGCGTTTATTTGAACGCTTTAAACAAATAGTTGTTGACTTGTTATGCTTATCCAGGGCGTAGCAAAATTTGATCAAACTACTATTGATTCGTGATACATGATTTAATACAAAGTGTTGTTAAATAGTTGTTGTAGCGTAGTAGAATTTGAAATGTGATATTGATTCGAACAAACCACTATTTTCTGGGATGTGATTGACAACATTGATACCTAATGCATTGATTAATATAATATTCTGCAAGTCTTGTTGATGATTTGTAATACATTAGCTTCAAGTTTGATGCTATTGTTAATGCTAATGCAATTTGTTGAATGTCTCTCATGAAACAATGATTGGGGTCTGTTTTAAAACAAATTGTTGCACGATTCAAACATACACTTGTGATACTTTTGACCAGGATTAATCCTGTCATCTTTAGGTAGTTTGTTGTTGGTTAACTAGTAATAACATGCTCTCTTGTTAACTAATATTGTTGTCTACTTTGTTGAGAGTTGTTTTCTTTAATAACTAGTTTGCTTGATGTTTTTATGCAGGTATCAGCAAAAGCAGTATATGAAGCCATTGTTAAGTACAAAGTGACTCATTTTTGTGCAGCACCAGTGGTGCTTAACTCAATAATTAATGCTCCGGCTGAGGAAACCATACTTCCTCTACCTCATGTTGTACATGTGAATACTGCTGGTGCTGCTCCTCCTCCTTCTGTTCTTTCCGGCATGTCTGAACGAGGATTTCGTGTCACACACACTTACGGTCTTTCGGAAACCTATGGCCCATCCGTCTATTGTGCCTGGAAACCAGAGTGGGACTCACTTCCACCAGAATCTCGTGCCCGGCTCCATGCAAGACAAGGGGTTAAGTACATTGCCTTGGAAGGCTTGGATGTTGTGAACACAAAAACTATGCAACCTGTACCTGCTGACGGTAAAACTGTTGGCGAAATCGTGATGCGTGGTAATGCTGTCATGAAAGGCTACTTAAAGAACCCTAAAGCTAATGAAGAGAGCTTTGCAAATGGATGGTATCATTCCGGTGATCTTGCGGTAAAGCATCCAGATGGATATATAGAAATTAAAGACAGATCAAAGGACATCATCATCTCAGGTGCTGAAAATATCAGCAGTGTAGAGGTAGAGAATGCTCTGTACTCGCATCCTGCTATACTTGAGACATCGGTGGTCGCTAGACCAGACGAGAAATGGGGCGAGTCTCCGTGTGCGTTCGTGACGTTAAAGCCAGGAGTGGATAGTAGTAACGAGCAGCGTCTAGTCGAGGATATACTGAAGTTCTGCAGGGCCAAGATGCCTGCTTATTGGGTACCGAAATCGGTTGTCTTTGGACCGTTACCTAAGACAGCTACTGGGAAGGTACAGAAACATCTGTTGAGGGCTAAGGCAAAGGAGATGGGGCCTCTCAAGACGAGCAAGTT

Protein sequence

>MS.gene041843.t1

MMGTKQDIDDLPKNAANYTSLTPLWFLERAAQVHPTRKSIIHGSLHYTWHQTYQRCRRFASALSNHSIGLGNTVAVIAPNIPALYEAHFGIPMAGAVINPVNIRLNASTIAFLLGHCTASVVIVDQEFFPLAEEALKIWSEKTKTFKSPILIVIGDENCDPKSLRYALSKGAVEYEDFLRSGDPKYDWKPPEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMNEGAVYLWTLPMFHCNGWCYTWTLAALFGTNICLRQVSAKAVYEAIVKYKVTHFCAAPVVLNSIINAPAEETILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWDSLPPESRARLHARQGVKYIALEGLDVVNTKTMQPVPADGKTVGEIVMRGNAVMKGYLKNPKANEESFANGWYHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEVENALYSHPAILETSVVARPDEKWGESPCAFVTLKPGVDSSNEQRLVEDILKFCRAKMPAYWVPKSVVFGPLPKTATGKVQKHLLRAKAKEMGPLKTSK