Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025344.t1 | XP_013463628.1 | 97 | 565 | 17 | 0 | 1 | 565 | 1 | 565 | 0.00E+00 | 1134.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025344.t1 | Q8VZF1 | 71.2 | 562 | 161 | 1 | 5 | 565 | 7 | 568 | 9.4e-248 | 857.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025344.t1 | A0A072V8G6 | 97.0 | 565 | 17 | 0 | 1 | 565 | 1 | 565 | 0.0e+00 | 1134.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene025344 | MS.gene037813 | PPI |
MS.gene025344 | MS.gene27218 | PPI |
MS.gene025344 | MS.gene23782 | PPI |
MS.gene037817 | MS.gene025344 | PPI |
MS.gene025344 | MS.gene017279 | PPI |
MS.gene025344 | MS.gene017547 | PPI |
MS.gene025344 | MS.gene061578 | PPI |
MS.gene025344 | MS.gene024710 | PPI |
MS.gene017552 | MS.gene025344 | PPI |
MS.gene017545 | MS.gene025344 | PPI |
MS.gene037815 | MS.gene025344 | PPI |
MS.gene025344 | MS.gene024712 | PPI |
MS.gene025344 | MS.gene21689 | PPI |
MS.gene025344 | MS.gene05028 | PPI |
MS.gene025344 | MS.gene27213 | PPI |
MS.gene025344 | MS.gene049681 | PPI |
MS.gene025344 | MS.gene008350 | PPI |
MS.gene025344 | MS.gene26216 | PPI |
MS.gene025344 | MS.gene21937 | PPI |
MS.gene025344 | MS.gene22277 | PPI |
MS.gene025344 | MS.gene23788 | PPI |
MS.gene025344 | MS.gene21691 | PPI |
MS.gene025344 | MS.gene23786 | PPI |
MS.gene025344 | MS.gene009614 | PPI |
MS.gene025344 | MS.gene99100 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025344.t1 | MTR_2g044180 | 96.820 | 566 | 18 | 0 | 1 | 566 | 1 | 566 | 0.0 | 1149 |
MS.gene025344.t1 | MTR_4g121600 | 85.866 | 566 | 80 | 0 | 1 | 566 | 1 | 566 | 0.0 | 1030 |
MS.gene025344.t1 | MTR_2g044180 | 96.632 | 475 | 16 | 0 | 92 | 566 | 1 | 475 | 0.0 | 961 |
MS.gene025344.t1 | MTR_8g074040 | 50.727 | 550 | 260 | 4 | 15 | 564 | 51 | 589 | 0.0 | 600 |
MS.gene025344.t1 | MTR_5g008800 | 51.361 | 551 | 255 | 4 | 15 | 565 | 9 | 546 | 0.0 | 590 |
MS.gene025344.t1 | MTR_3g064420 | 51.075 | 558 | 258 | 7 | 7 | 556 | 1 | 551 | 0.0 | 573 |
MS.gene025344.t1 | MTR_5g008820 | 46.931 | 554 | 279 | 3 | 12 | 565 | 6 | 544 | 0.0 | 572 |
MS.gene025344.t1 | MTR_5g076240 | 48.759 | 564 | 268 | 8 | 7 | 562 | 1 | 551 | 0.0 | 552 |
MS.gene025344.t1 | MTR_8g074120 | 51.738 | 489 | 225 | 4 | 73 | 561 | 20 | 497 | 0.0 | 532 |
MS.gene025344.t1 | MTR_8g074040 | 50.207 | 482 | 229 | 4 | 83 | 564 | 1 | 471 | 0.0 | 525 |
MS.gene025344.t1 | MTR_5g076200 | 47.602 | 563 | 279 | 8 | 7 | 563 | 1 | 553 | 8.26e-179 | 518 |
MS.gene025344.t1 | MTR_5g076220 | 47.576 | 557 | 280 | 7 | 7 | 559 | 1 | 549 | 1.41e-174 | 507 |
MS.gene025344.t1 | MTR_0161s0050 | 47.880 | 566 | 275 | 9 | 7 | 563 | 1 | 555 | 6.81e-171 | 498 |
MS.gene025344.t1 | MTR_5g023730 | 40.747 | 562 | 310 | 10 | 3 | 559 | 1 | 544 | 7.66e-146 | 433 |
MS.gene025344.t1 | MTR_0803s0020 | 28.980 | 559 | 347 | 14 | 1 | 549 | 220 | 738 | 3.71e-58 | 211 |
MS.gene025344.t1 | MTR_4g057730 | 27.679 | 560 | 343 | 20 | 16 | 556 | 23 | 539 | 3.05e-43 | 163 |
MS.gene025344.t1 | MTR_2g095510 | 27.417 | 569 | 338 | 21 | 10 | 556 | 21 | 536 | 1.12e-41 | 158 |
MS.gene025344.t1 | MTR_8g039720 | 26.557 | 546 | 353 | 18 | 29 | 558 | 46 | 559 | 1.13e-41 | 159 |
MS.gene025344.t1 | MTR_1569s0010 | 30.939 | 362 | 225 | 11 | 199 | 553 | 186 | 529 | 3.10e-40 | 154 |
MS.gene025344.t1 | MTR_1g026310 | 25.646 | 542 | 361 | 17 | 29 | 558 | 49 | 560 | 1.74e-37 | 147 |
MS.gene025344.t1 | MTR_1g063110 | 26.692 | 517 | 335 | 16 | 47 | 551 | 57 | 541 | 7.23e-37 | 145 |
MS.gene025344.t1 | MTR_3g460770 | 25.655 | 534 | 323 | 15 | 47 | 557 | 57 | 539 | 9.47e-37 | 144 |
MS.gene025344.t1 | MTR_4g077900 | 30.978 | 368 | 215 | 10 | 201 | 552 | 127 | 471 | 1.83e-36 | 142 |
MS.gene025344.t1 | MTR_5g027500 | 27.701 | 509 | 326 | 14 | 58 | 552 | 81 | 561 | 2.45e-36 | 144 |
MS.gene025344.t1 | MTR_2g105570 | 27.580 | 533 | 320 | 19 | 46 | 554 | 54 | 544 | 1.75e-35 | 141 |
MS.gene025344.t1 | MTR_1g090737 | 28.084 | 381 | 236 | 11 | 190 | 556 | 207 | 563 | 1.51e-34 | 138 |
MS.gene025344.t1 | MTR_5g027480 | 27.921 | 505 | 318 | 16 | 58 | 552 | 80 | 548 | 1.53e-34 | 138 |
MS.gene025344.t1 | MTR_4g128337 | 27.799 | 536 | 339 | 17 | 35 | 557 | 46 | 546 | 1.15e-33 | 135 |
MS.gene025344.t1 | MTR_1g063120 | 28.610 | 367 | 237 | 9 | 201 | 558 | 201 | 551 | 1.39e-33 | 135 |
MS.gene025344.t1 | MTR_1g073180 | 29.275 | 386 | 247 | 14 | 173 | 551 | 161 | 527 | 2.31e-33 | 134 |
MS.gene025344.t1 | MTR_4g005750 | 27.048 | 525 | 327 | 17 | 46 | 554 | 53 | 537 | 2.77e-33 | 134 |
MS.gene025344.t1 | MTR_3g035130 | 27.548 | 363 | 226 | 11 | 201 | 551 | 170 | 507 | 1.58e-32 | 132 |
MS.gene025344.t1 | MTR_4g057730 | 26.749 | 486 | 300 | 18 | 16 | 483 | 23 | 470 | 4.12e-32 | 130 |
MS.gene025344.t1 | MTR_3g088880 | 27.366 | 391 | 257 | 12 | 182 | 563 | 188 | 560 | 3.39e-31 | 128 |
MS.gene025344.t1 | MTR_5g007640 | 26.792 | 530 | 323 | 21 | 46 | 554 | 97 | 582 | 1.03e-30 | 127 |
MS.gene025344.t1 | MTR_1g073180 | 27.717 | 368 | 242 | 12 | 173 | 535 | 183 | 531 | 9.90e-29 | 120 |
MS.gene025344.t1 | MTR_3g088870 | 26.804 | 388 | 243 | 12 | 193 | 563 | 199 | 562 | 1.58e-28 | 120 |
MS.gene025344.t1 | MTR_4g057730 | 25.800 | 469 | 292 | 18 | 16 | 466 | 23 | 453 | 1.09e-27 | 116 |
MS.gene025344.t1 | MTR_1586s0010 | 27.701 | 361 | 232 | 12 | 57 | 408 | 81 | 421 | 2.81e-27 | 115 |
MS.gene025344.t1 | MTR_4g011790 | 24.685 | 555 | 347 | 20 | 36 | 552 | 71 | 592 | 1.25e-26 | 115 |
MS.gene025344.t1 | MTR_4g011790 | 24.783 | 577 | 359 | 22 | 36 | 573 | 71 | 611 | 2.00e-25 | 111 |
MS.gene025344.t1 | MTR_3g035130 | 26.537 | 309 | 200 | 7 | 201 | 500 | 170 | 460 | 2.11e-25 | 110 |
MS.gene025344.t1 | MTR_2g095510 | 25.696 | 467 | 278 | 19 | 10 | 455 | 21 | 439 | 2.80e-25 | 109 |
MS.gene025344.t1 | MTR_2g030240 | 22.509 | 542 | 374 | 16 | 40 | 555 | 22 | 543 | 5.24e-25 | 109 |
MS.gene025344.t1 | MTR_4g011790 | 24.248 | 565 | 346 | 20 | 36 | 552 | 71 | 601 | 6.12e-25 | 109 |
MS.gene025344.t1 | MTR_2g030240 | 25.441 | 397 | 256 | 14 | 185 | 555 | 67 | 449 | 1.38e-23 | 104 |
MS.gene025344.t1 | MTR_1054s0020 | 25.430 | 523 | 310 | 20 | 57 | 558 | 308 | 771 | 1.73e-23 | 105 |
MS.gene025344.t1 | MTR_7g084850 | 23.593 | 551 | 345 | 15 | 47 | 555 | 204 | 720 | 4.57e-22 | 101 |
MS.gene025344.t1 | MTR_1g086600 | 23.028 | 634 | 382 | 22 | 8 | 558 | 54 | 664 | 2.12e-20 | 95.9 |
MS.gene025344.t1 | MTR_4g013210 | 27.013 | 385 | 227 | 14 | 201 | 552 | 76 | 439 | 1.37e-19 | 92.4 |
MS.gene025344.t1 | MTR_7g109830 | 23.296 | 631 | 371 | 22 | 8 | 549 | 32 | 638 | 1.06e-17 | 87.4 |
MS.gene025344.t1 | MTR_4g013210 | 22.820 | 539 | 314 | 21 | 46 | 552 | 82 | 550 | 3.94e-17 | 85.1 |
MS.gene025344.t1 | MTR_4g013210 | 23.327 | 523 | 325 | 18 | 46 | 529 | 82 | 567 | 4.20e-17 | 85.1 |
MS.gene025344.t1 | MTR_4g013210 | 32.075 | 159 | 100 | 5 | 402 | 552 | 240 | 398 | 1.19e-15 | 79.7 |
MS.gene025344.t1 | MTR_8g083170 | 22.796 | 465 | 236 | 18 | 199 | 557 | 270 | 717 | 6.18e-13 | 72.4 |
MS.gene025344.t1 | MTR_1g026470 | 23.936 | 376 | 254 | 12 | 29 | 395 | 49 | 401 | 2.04e-12 | 69.7 |
MS.gene025344.t1 | MTR_1g026430 | 23.670 | 376 | 255 | 12 | 29 | 395 | 49 | 401 | 2.33e-12 | 69.7 |
MS.gene025344.t1 | MTR_4g068670 | 23.922 | 255 | 181 | 5 | 47 | 296 | 79 | 325 | 2.34e-12 | 70.5 |
MS.gene025344.t1 | MTR_1g034360 | 22.509 | 271 | 193 | 6 | 35 | 296 | 65 | 327 | 8.38e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025344.t1 | AT3G16910 | 71.048 | 563 | 162 | 1 | 5 | 566 | 7 | 569 | 0.0 | 865 |
MS.gene025344.t1 | AT1G20560 | 53.249 | 554 | 248 | 5 | 12 | 565 | 8 | 550 | 0.0 | 603 |
MS.gene025344.t1 | AT2G17650 | 51.596 | 564 | 256 | 4 | 5 | 559 | 46 | 601 | 0.0 | 590 |
MS.gene025344.t1 | AT5G16340 | 48.663 | 561 | 274 | 7 | 7 | 564 | 1 | 550 | 0.0 | 541 |
MS.gene025344.t1 | AT5G16370 | 47.247 | 563 | 283 | 6 | 7 | 566 | 1 | 552 | 0.0 | 538 |
MS.gene025344.t1 | AT1G65890 | 47.247 | 563 | 274 | 8 | 7 | 556 | 1 | 553 | 0.0 | 526 |
MS.gene025344.t1 | AT1G20560 | 53.002 | 483 | 216 | 5 | 83 | 565 | 1 | 472 | 0.0 | 521 |
MS.gene025344.t1 | AT1G65880 | 45.811 | 561 | 286 | 6 | 7 | 556 | 1 | 554 | 5.32e-180 | 521 |
MS.gene025344.t1 | AT1G21530 | 47.455 | 550 | 273 | 8 | 15 | 558 | 9 | 548 | 6.72e-179 | 518 |
MS.gene025344.t1 | AT1G21540 | 46.909 | 550 | 277 | 8 | 15 | 558 | 9 | 549 | 6.89e-177 | 513 |
MS.gene025344.t1 | AT1G21530 | 47.273 | 550 | 272 | 8 | 15 | 558 | 9 | 546 | 1.07e-176 | 512 |
MS.gene025344.t1 | AT1G75960 | 47.387 | 555 | 278 | 7 | 7 | 558 | 1 | 544 | 1.40e-176 | 511 |
MS.gene025344.t1 | AT1G66120 | 45.714 | 560 | 284 | 7 | 7 | 558 | 1 | 548 | 2.76e-176 | 512 |
MS.gene025344.t1 | AT1G77240 | 46.558 | 552 | 271 | 8 | 15 | 558 | 9 | 544 | 1.87e-171 | 499 |
MS.gene025344.t1 | AT1G76290 | 44.746 | 552 | 284 | 6 | 15 | 563 | 9 | 542 | 6.01e-162 | 474 |
MS.gene025344.t1 | AT1G68270 | 40.142 | 563 | 284 | 8 | 7 | 556 | 1 | 523 | 1.02e-142 | 425 |
MS.gene025344.t1 | AT4G05160 | 27.223 | 551 | 341 | 19 | 25 | 556 | 32 | 541 | 3.42e-43 | 163 |
MS.gene025344.t1 | AT3G21240 | 26.981 | 530 | 322 | 17 | 46 | 554 | 64 | 549 | 2.20e-39 | 152 |
MS.gene025344.t1 | AT3G48990 | 26.816 | 537 | 344 | 16 | 25 | 551 | 9 | 506 | 1.09e-38 | 149 |
MS.gene025344.t1 | AT1G62940 | 28.302 | 530 | 309 | 17 | 47 | 554 | 55 | 535 | 1.81e-38 | 149 |
MS.gene025344.t1 | AT5G63380 | 30.579 | 363 | 223 | 12 | 198 | 551 | 208 | 550 | 5.30e-36 | 142 |
MS.gene025344.t1 | AT1G20510 | 25.981 | 535 | 350 | 16 | 29 | 552 | 39 | 538 | 1.09e-35 | 141 |
MS.gene025344.t1 | AT3G21230 | 28.355 | 529 | 326 | 17 | 46 | 558 | 76 | 567 | 4.35e-35 | 140 |
MS.gene025344.t1 | AT4G19010 | 29.650 | 371 | 222 | 10 | 198 | 552 | 208 | 555 | 6.39e-35 | 139 |
MS.gene025344.t1 | AT1G65060 | 27.542 | 541 | 327 | 20 | 35 | 554 | 63 | 559 | 7.19e-33 | 133 |
MS.gene025344.t1 | AT1G20500 | 27.224 | 371 | 233 | 10 | 201 | 558 | 204 | 550 | 3.10e-32 | 131 |
MS.gene025344.t1 | AT3G21240 | 26.362 | 459 | 279 | 15 | 46 | 484 | 64 | 483 | 2.84e-31 | 128 |
MS.gene025344.t1 | AT3G21240 | 26.362 | 459 | 279 | 15 | 46 | 484 | 64 | 483 | 2.84e-31 | 128 |
MS.gene025344.t1 | AT3G21230 | 28.330 | 473 | 292 | 14 | 46 | 503 | 76 | 516 | 1.09e-29 | 124 |
MS.gene025344.t1 | AT1G51680 | 26.554 | 531 | 328 | 17 | 46 | 554 | 66 | 556 | 6.36e-29 | 121 |
MS.gene025344.t1 | AT1G20480 | 24.213 | 508 | 336 | 12 | 57 | 551 | 86 | 557 | 1.00e-28 | 121 |
MS.gene025344.t1 | AT1G20510 | 25.000 | 464 | 309 | 12 | 29 | 483 | 39 | 472 | 5.98e-27 | 115 |
MS.gene025344.t1 | AT5G38120 | 27.072 | 362 | 235 | 13 | 199 | 552 | 204 | 544 | 3.00e-26 | 113 |
MS.gene025344.t1 | AT3G21230 | 27.753 | 454 | 281 | 15 | 46 | 484 | 76 | 497 | 9.54e-26 | 111 |
MS.gene025344.t1 | AT1G51680 | 25.896 | 502 | 311 | 16 | 46 | 526 | 66 | 527 | 4.95e-25 | 109 |
MS.gene025344.t1 | AT1G30520 | 22.423 | 553 | 388 | 15 | 26 | 554 | 13 | 548 | 9.52e-24 | 105 |
MS.gene025344.t1 | AT1G30520 | 22.423 | 553 | 388 | 15 | 26 | 554 | 13 | 548 | 9.52e-24 | 105 |
MS.gene025344.t1 | AT5G36880 | 24.596 | 557 | 332 | 20 | 47 | 555 | 199 | 715 | 2.62e-23 | 105 |
MS.gene025344.t1 | AT5G38120 | 27.187 | 320 | 211 | 10 | 199 | 512 | 204 | 507 | 3.48e-23 | 103 |
MS.gene025344.t1 | AT5G36880 | 24.596 | 557 | 332 | 20 | 47 | 555 | 149 | 665 | 4.29e-23 | 104 |
MS.gene025344.t1 | AT5G36880 | 24.596 | 557 | 332 | 20 | 47 | 555 | 149 | 665 | 4.29e-23 | 104 |
MS.gene025344.t1 | AT5G36880 | 24.596 | 557 | 332 | 20 | 47 | 555 | 149 | 665 | 4.29e-23 | 104 |
MS.gene025344.t1 | AT5G36880 | 24.596 | 557 | 332 | 20 | 47 | 555 | 149 | 665 | 4.29e-23 | 104 |
MS.gene025344.t1 | AT1G20510 | 24.771 | 436 | 289 | 12 | 29 | 455 | 39 | 444 | 1.28e-22 | 101 |
MS.gene025344.t1 | AT1G51680 | 25.652 | 460 | 286 | 15 | 46 | 484 | 66 | 490 | 2.98e-20 | 94.7 |
MS.gene025344.t1 | AT3G16170 | 25.789 | 380 | 235 | 13 | 201 | 552 | 241 | 601 | 3.21e-20 | 95.1 |
MS.gene025344.t1 | AT1G49430 | 21.923 | 520 | 310 | 13 | 21 | 470 | 46 | 539 | 1.41e-19 | 93.6 |
MS.gene025344.t1 | AT1G65060 | 26.106 | 452 | 274 | 19 | 24 | 455 | 53 | 464 | 6.05e-19 | 90.9 |
MS.gene025344.t1 | AT5G38120 | 26.804 | 291 | 191 | 10 | 199 | 483 | 204 | 478 | 7.18e-18 | 87.4 |
MS.gene025344.t1 | AT5G38120 | 26.804 | 291 | 191 | 10 | 199 | 483 | 204 | 478 | 7.18e-18 | 87.4 |
MS.gene025344.t1 | AT1G30520 | 21.019 | 471 | 338 | 12 | 26 | 482 | 13 | 463 | 9.29e-16 | 80.5 |
MS.gene025344.t1 | AT1G30520 | 21.019 | 471 | 338 | 12 | 26 | 482 | 13 | 463 | 9.29e-16 | 80.5 |
MS.gene025344.t1 | AT2G04350 | 22.807 | 513 | 304 | 19 | 45 | 486 | 126 | 617 | 7.36e-15 | 78.6 |
MS.gene025344.t1 | AT2G04350 | 22.807 | 513 | 304 | 19 | 45 | 486 | 126 | 617 | 7.36e-15 | 78.6 |
MS.gene025344.t1 | AT4G14070 | 26.996 | 263 | 157 | 9 | 316 | 557 | 472 | 720 | 5.74e-12 | 69.3 |
MS.gene025344.t1 | AT1G20490 | 24.029 | 412 | 268 | 16 | 45 | 444 | 63 | 441 | 4.88e-11 | 65.9 |
MS.gene025344.t1 | AT1G20490 | 24.029 | 412 | 268 | 16 | 45 | 444 | 63 | 441 | 4.88e-11 | 65.9 |
Find 137 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTCCAAACACAACTGATTT+TGG | 0.081295 | 2.2:+42810415 | None:intergenic |
ACACAGCCTTAACGCCTTTA+TGG | 0.132487 | 2.2:-42826538 | MS.gene025344:CDS |
CCTCCTCCTTCTCTTCTTTC+CGG | 0.155675 | 2.2:-42811042 | MS.gene025344:CDS |
TCACCGATCACAATTAAAAT+TGG | 0.217531 | 2.2:+42821486 | None:intergenic |
TCAAAAGATATCATTATTTC+AGG | 0.224235 | 2.2:-42810652 | MS.gene025344:CDS |
GCTCTTTATGAAGCTCATTT+TGG | 0.226650 | 2.2:-42821684 | MS.gene025344:CDS |
AAACTTTCTTCATTAGCTTT+AGG | 0.247875 | 2.2:+42810748 | None:intergenic |
GTACTCACATCGTGCAATAT+TGG | 0.297040 | 2.2:-42810590 | MS.gene025344:CDS |
ACCATCAAAGGAATTGATTC+AGG | 0.301640 | 2.2:+42808826 | None:intergenic |
GTGTAGTTTGCTTCGTTCTT+TGG | 0.303247 | 2.2:+42826557 | None:intergenic |
TGGAGCCGAGCTTTGGATTC+CGG | 0.305721 | 2.2:+42810916 | None:intergenic |
TGGACACTTGCAGCTCTCTT+TGG | 0.310580 | 2.2:-42821168 | MS.gene025344:CDS |
ACCTGAATCAATTCCTTTGA+TGG | 0.316260 | 2.2:-42808827 | MS.gene025344:CDS |
GGTAGCCATGGTGATGAAAA+AGG | 0.337681 | 2.2:-42826594 | None:intergenic |
GCAAATGGATGGTTTCATTC+TGG | 0.352806 | 2.2:-42810724 | MS.gene025344:CDS |
AATTACCAGATCTGCTATCT+TGG | 0.355989 | 2.2:+42808750 | None:intergenic |
TGAGTCCCACTCCGGTTTCC+AGG | 0.356736 | 2.2:+42810945 | None:intergenic |
ATTGCTTTGGGTTACACATC+TGG | 0.360202 | 2.2:-42821339 | MS.gene025344:CDS |
TCTTGCATGGAGCCGAGCTT+TGG | 0.379661 | 2.2:+42810909 | None:intergenic |
TCCAACTACTCCATTGGTCT+TGG | 0.379928 | 2.2:-42826401 | MS.gene025344:CDS |
TCATAAAGAGCTGGAACATT+AGG | 0.380081 | 2.2:+42821696 | None:intergenic |
ATCTTCCCTGTAGCTGTCTT+AGG | 0.396072 | 2.2:+42810388 | None:intergenic |
GACTCACCCCATTTCTCATC+TGG | 0.399784 | 2.2:+42810547 | None:intergenic |
AACGCATATCTATGTGCCTT+AGG | 0.400494 | 2.2:+42821450 | None:intergenic |
GTCTTACCATCAGGTGGAAC+AGG | 0.402567 | 2.2:+42810826 | None:intergenic |
GTCCCAAAATCAGTTGTGTT+TGG | 0.403182 | 2.2:-42810418 | MS.gene025344:CDS |
GGAAGTATGGTTTCCTCAGC+TGG | 0.403340 | 2.2:+42811105 | None:intergenic |
GCAATGGTTGGTGCTACATT+TGG | 0.412999 | 2.2:-42821188 | MS.gene025344:CDS |
CCTGTAGCTGTCTTAGGTAA+TGG | 0.413565 | 2.2:+42810394 | None:intergenic |
TGAATGGCAGAGCATTGCTT+TGG | 0.413800 | 2.2:-42821352 | MS.gene025344:CDS |
TGATGTAACACCACACCTTT+CGG | 0.414876 | 2.2:+42821303 | None:intergenic |
TTGCAAGGCCAGATGAGAAA+TGG | 0.419651 | 2.2:-42810555 | MS.gene025344:CDS |
GGCTAAGATGTCTTCTTATA+TGG | 0.421977 | 2.2:-42810440 | MS.gene025344:CDS |
AACAGAAAATCACTCATTCA+TGG | 0.427263 | 2.2:-42826485 | MS.gene025344:CDS |
GAAGAATTTGTTAAGGGCTA+AGG | 0.433320 | 2.2:-42810362 | MS.gene025344:CDS |
TCCAAGACCAATGGAGTAGT+TGG | 0.435750 | 2.2:+42826400 | None:intergenic |
AGTCACTTTGTACTTGTCAA+TGG | 0.438317 | 2.2:+42811173 | None:intergenic |
TGTCTATTGTGCCTGGAAAC+CGG | 0.439619 | 2.2:-42810956 | MS.gene025344:CDS |
GTCTCCCAAGATAGCAGATC+TGG | 0.441135 | 2.2:-42808755 | MS.gene025344:intron |
CCATTACCTAAGACAGCTAC+AGG | 0.441730 | 2.2:-42810394 | MS.gene025344:CDS |
GATACAGAAGAATTTGTTAA+GGG | 0.445806 | 2.2:-42810368 | MS.gene025344:CDS |
CTCTTAGTGCAGCACTTATG+TGG | 0.447373 | 2.2:-42821260 | MS.gene025344:CDS |
GTCCGTCTGTCTATTGTGCC+TGG | 0.447596 | 2.2:-42810963 | MS.gene025344:CDS |
GCTCTTTCCAACTACTCCAT+TGG | 0.447627 | 2.2:-42826407 | MS.gene025344:CDS |
AGATACAGAAGAATTTGTTA+AGG | 0.451352 | 2.2:-42810369 | MS.gene025344:CDS |
TACAACTTGCTCATCTTGAC+AGG | 0.451496 | 2.2:+42810325 | None:intergenic |
GAATGGCAGAGCATTGCTTT+GGG | 0.457157 | 2.2:-42821351 | MS.gene025344:CDS |
AAGGGCTAAGGCAAAGGAGA+TGG | 0.468718 | 2.2:-42810350 | MS.gene025344:CDS |
ATTACCAGATCTGCTATCTT+GGG | 0.469495 | 2.2:+42808751 | None:intergenic |
TGCAAGGCCAGATGAGAAAT+GGG | 0.476747 | 2.2:-42810554 | MS.gene025344:CDS |
CTACCTATGTTTCATTGCAA+TGG | 0.477367 | 2.2:-42821204 | MS.gene025344:CDS |
GAAAGAAGAGAAGGAGGAGG+AGG | 0.479137 | 2.2:+42811045 | None:intergenic |
CTATGTTTCATTGCAATGGT+TGG | 0.479731 | 2.2:-42821200 | MS.gene025344:CDS |
ATGCTCTGCCATTCATCCTC+AGG | 0.482394 | 2.2:+42821360 | None:intergenic |
GGCAACCTCCTGAGGATGAA+TGG | 0.485770 | 2.2:-42821368 | MS.gene025344:CDS |
CTTTCCGGCATGTCTCGACT+CGG | 0.487877 | 2.2:-42811027 | MS.gene025344:CDS |
TCATTACTACTATCCACTCC+TGG | 0.491444 | 2.2:+42810499 | None:intergenic |
CCGATCACAATTAAAATTGG+AGG | 0.494568 | 2.2:+42821489 | None:intergenic |
AGGGCTAAGGCAAAGGAGAT+GGG | 0.495432 | 2.2:-42810349 | MS.gene025344:CDS |
TCACCAATGGTCTTACCATC+AGG | 0.495785 | 2.2:+42810817 | None:intergenic |
TACGGTCTTTCAGAAACCTT+CGG | 0.498417 | 2.2:-42810985 | MS.gene025344:CDS |
CACATTGTACATGTGAATAC+AGG | 0.501586 | 2.2:-42811075 | MS.gene025344:CDS |
ATCAATAAGAAAAGCAATTG+TGG | 0.503100 | 2.2:+42821608 | None:intergenic |
AATGTGAGGTAGAGGAAGTA+TGG | 0.503521 | 2.2:+42811092 | None:intergenic |
ACGCATATCTATGTGCCTTA+GGG | 0.505754 | 2.2:+42821451 | None:intergenic |
TTGCTTTGGGTTACACATCT+GGG | 0.512874 | 2.2:-42821338 | MS.gene025344:CDS |
GGAGGTTGCCAATCGTACTC+AGG | 0.514346 | 2.2:+42821381 | None:intergenic |
TACGAAGACTTTCTTCAAAG+TGG | 0.527247 | 2.2:-42821408 | MS.gene025344:CDS |
TTTGTTAAGGGCTAAGGCAA+AGG | 0.528222 | 2.2:-42810356 | MS.gene025344:CDS |
ATTATAGAGTTAAGCACCAC+TGG | 0.529597 | 2.2:+42811135 | None:intergenic |
TTTCGCATCACACACCAATA+CGG | 0.530887 | 2.2:-42811003 | MS.gene025344:CDS |
ACATGTACAATGTGAGGTAG+AGG | 0.531174 | 2.2:+42811084 | None:intergenic |
CGTGGTAATGTCGTGATGAA+AGG | 0.532734 | 2.2:-42810784 | MS.gene025344:CDS |
TTCAAAACAGACCCTGCCAT+TGG | 0.533496 | 2.2:+42821657 | None:intergenic |
CACAAGCATATGCCTCCGCC+AGG | 0.535971 | 2.2:-42821145 | MS.gene025344:intron |
TCTTAGTGCAGCACTTATGT+GGG | 0.537194 | 2.2:-42821259 | MS.gene025344:CDS |
AAGGTGAATGTGACCATCAA+AGG | 0.542979 | 2.2:+42808814 | None:intergenic |
TGCAATATTGGAAGCATCAG+TGG | 0.546071 | 2.2:-42810578 | MS.gene025344:CDS |
ATCGAACACCTTGTCTTGCA+TGG | 0.546306 | 2.2:+42810896 | None:intergenic |
AAATGAGCTTCATAAAGAGC+TGG | 0.546390 | 2.2:+42821687 | None:intergenic |
CATAGATATGCGTTGAGCAA+AGG | 0.550713 | 2.2:-42821441 | MS.gene025344:CDS |
TACAGTGTTTCCAAGACCAA+TGG | 0.552668 | 2.2:+42826391 | None:intergenic |
AGACAAGGTGTTCGATACAT+TGG | 0.556287 | 2.2:-42810889 | MS.gene025344:CDS |
TGATGAAAACTGCGACCCTA+AGG | 0.559716 | 2.2:-42821466 | MS.gene025344:CDS |
CAACCATTGCAATGAAACAT+AGG | 0.561963 | 2.2:+42821201 | None:intergenic |
TGGAAGCATCAGTGGTTGCA+AGG | 0.564674 | 2.2:-42810570 | MS.gene025344:CDS |
ATGCAACCTGTTCCACCTGA+TGG | 0.565717 | 2.2:-42810832 | MS.gene025344:CDS |
TAATGAAAAGTGTTTAGTTG+AGG | 0.566255 | 2.2:-42810482 | MS.gene025344:CDS |
GAAGTATGGTTTCCTCAGCT+GGG | 0.567151 | 2.2:+42811106 | None:intergenic |
CCGGAAAGAAGAGAAGGAGG+AGG | 0.569779 | 2.2:+42811042 | None:intergenic |
AGGTTTCTGAAAGACCGTAT+TGG | 0.569812 | 2.2:+42810989 | None:intergenic |
GTGGTGACCCTGAGTACGAT+TGG | 0.569875 | 2.2:-42821389 | MS.gene025344:CDS |
GAATTGATTCAGGTTCTAAG+AGG | 0.569907 | 2.2:+42808836 | None:intergenic |
AAAGATATCATTATTTCAGG+TGG | 0.585855 | 2.2:-42810649 | MS.gene025344:CDS |
TCTTGATATTGAGACGGTGA+AGG | 0.587344 | 2.2:+42808795 | None:intergenic |
ATGCCGGAAAGAAGAGAAGG+AGG | 0.588207 | 2.2:+42811039 | None:intergenic |
AAGCAAATCGACAGCAACGT+TGG | 0.588367 | 2.2:+42826432 | None:intergenic |
CTTGCTGTAAAGCATGAAGA+TGG | 0.589333 | 2.2:-42810697 | MS.gene025344:CDS |
ATGGATCATGTCACTACACT+TGG | 0.590966 | 2.2:-42826466 | MS.gene025344:CDS |
AGGTGTTCGATACATTGGCT+TGG | 0.591861 | 2.2:-42810884 | MS.gene025344:CDS |
AAATCCGAGTCGAGACATGC+CGG | 0.591971 | 2.2:+42811023 | None:intergenic |
GGAGTGGGACTCACTTCCAC+CGG | 0.594288 | 2.2:-42810935 | MS.gene025344:CDS |
GACATGCCGGAAAGAAGAGA+AGG | 0.596321 | 2.2:+42811036 | None:intergenic |
GGGCTAAGGCAAAGGAGATG+GGG | 0.600244 | 2.2:-42810348 | MS.gene025344:CDS |
GCATTTGTGACATTAAAGCC+AGG | 0.604690 | 2.2:-42810517 | MS.gene025344:CDS |
CCACCTGATGGTAAGACCAT+TGG | 0.604984 | 2.2:-42810820 | MS.gene025344:CDS |
CTCTGCCATTCATCCTCAGG+AGG | 0.607046 | 2.2:+42821363 | None:intergenic |
GAGGTTGCCAATCGTACTCA+GGG | 0.610852 | 2.2:+42821382 | None:intergenic |
AGCCGAGCTTTGGATTCCGG+TGG | 0.611114 | 2.2:+42810919 | None:intergenic |
GCTTATGCAGGTATCAGCTA+AGG | 0.611193 | 2.2:-42811208 | MS.gene025344:intron |
GGTGGAAGTGAGTCCCACTC+CGG | 0.616571 | 2.2:+42810937 | None:intergenic |
TTGTGCCTGGAAACCGGAGT+GGG | 0.618512 | 2.2:-42810950 | MS.gene025344:CDS |
GTGGTAATGTCGTGATGAAA+GGG | 0.622727 | 2.2:-42810783 | MS.gene025344:CDS |
ACGCATCACGATCTCACCAA+TGG | 0.623510 | 2.2:+42810804 | None:intergenic |
TGTGACATTAAAGCCAGGAG+TGG | 0.623603 | 2.2:-42810512 | MS.gene025344:CDS |
TTCCACCGGAATCCAAAGCT+CGG | 0.624804 | 2.2:-42810921 | MS.gene025344:CDS |
GCTCGGCTCCATGCAAGACA+AGG | 0.625579 | 2.2:-42810904 | MS.gene025344:CDS |
TATAATGAATGCCCCAGCTG+AGG | 0.633403 | 2.2:-42811118 | MS.gene025344:CDS |
GGGACGACTTCTAGTCCGAA+AGG | 0.639697 | 2.2:-42821318 | MS.gene025344:CDS |
ACAATAGACAGACGGACCGA+AGG | 0.639902 | 2.2:+42810969 | None:intergenic |
TTCCAGGCACAATAGACAGA+CGG | 0.641271 | 2.2:+42810961 | None:intergenic |
GACTTCTAGTCCGAAAGGTG+TGG | 0.641617 | 2.2:-42821313 | MS.gene025344:CDS |
CCAATGGTCTTACCATCAGG+TGG | 0.642243 | 2.2:+42810820 | None:intergenic |
GTACGATTGGCAACCTCCTG+AGG | 0.643191 | 2.2:-42821376 | MS.gene025344:CDS |
AAGTATGGTTTCCTCAGCTG+GGG | 0.651095 | 2.2:+42811107 | None:intergenic |
AATCGTTCTTGATATTGAGA+CGG | 0.652651 | 2.2:+42808789 | None:intergenic |
ATTGTGCCTGGAAACCGGAG+TGG | 0.661961 | 2.2:-42810951 | MS.gene025344:CDS |
CTTAGTGCAGCACTTATGTG+GGG | 0.674840 | 2.2:-42821258 | MS.gene025344:CDS |
GAGACATGAGATATGCTCCA+CGG | 0.688596 | 2.2:+42821280 | None:intergenic |
CTTATGTGGGGAATGAACGA+AGG | 0.695830 | 2.2:-42821246 | MS.gene025344:CDS |
GTATTCACATGTACAATGTG+AGG | 0.701175 | 2.2:+42811078 | None:intergenic |
GCAAGGCCAGATGAGAAATG+GGG | 0.703932 | 2.2:-42810553 | MS.gene025344:CDS |
CATTACCTAAGACAGCTACA+GGG | 0.705860 | 2.2:-42810393 | MS.gene025344:CDS |
ATTGGTGAGATCGTGATGCG+TGG | 0.717122 | 2.2:-42810802 | MS.gene025344:CDS |
TTTAATGTCACAAATGCACA+TGG | 0.723561 | 2.2:+42810523 | None:intergenic |
ATTGTACATGTGAATACAGG+TGG | 0.737775 | 2.2:-42811072 | MS.gene025344:CDS |
GGTGTGGTGTTACATCACCG+TGG | 0.765409 | 2.2:-42821297 | MS.gene025344:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 42808578 | 42826609 | 42808578 | ID=MS.gene025344 |
chr2.2 | mRNA | 42808578 | 42826609 | 42808578 | ID=MS.gene025344.t1;Parent=MS.gene025344 |
chr2.2 | exon | 42826394 | 42826609 | 42826394 | ID=MS.gene025344.t1.exon1;Parent=MS.gene025344.t1 |
chr2.2 | CDS | 42826394 | 42826609 | 42826394 | ID=cds.MS.gene025344.t1;Parent=MS.gene025344.t1 |
chr2.2 | exon | 42821146 | 42821733 | 42821146 | ID=MS.gene025344.t1.exon2;Parent=MS.gene025344.t1 |
chr2.2 | CDS | 42821146 | 42821733 | 42821146 | ID=cds.MS.gene025344.t1;Parent=MS.gene025344.t1 |
chr2.2 | exon | 42810328 | 42811220 | 42810328 | ID=MS.gene025344.t1.exon3;Parent=MS.gene025344.t1 |
chr2.2 | CDS | 42810328 | 42811220 | 42810328 | ID=cds.MS.gene025344.t1;Parent=MS.gene025344.t1 |
chr2.2 | exon | 42808756 | 42808870 | 42808756 | ID=MS.gene025344.t1.exon4;Parent=MS.gene025344.t1 |
chr2.2 | CDS | 42808756 | 42808870 | 42808756 | ID=cds.MS.gene025344.t1;Parent=MS.gene025344.t1 |
chr2.2 | exon | 42808578 | 42808589 | 42808578 | ID=MS.gene025344.t1.exon5;Parent=MS.gene025344.t1 |
chr2.2 | CDS | 42808578 | 42808589 | 42808578 | ID=cds.MS.gene025344.t1;Parent=MS.gene025344.t1 |
Gene Sequence |
Protein sequence |