AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05028

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05028.t1 MTR_3g064420 92.096 582 8 2 1 544 1 582 0.0 1097
MS.gene05028.t1 MTR_8g074040 48.288 555 234 7 1 516 43 583 0.0 549
MS.gene05028.t1 MTR_5g008800 48.282 553 235 5 1 516 1 539 0.0 544
MS.gene05028.t1 MTR_5g076240 50.712 562 212 8 1 514 1 545 0.0 539
MS.gene05028.t1 MTR_4g121600 48.474 557 237 8 1 514 7 556 1.78e-180 520
MS.gene05028.t1 MTR_2g044180 47.935 557 240 7 1 514 7 556 3.14e-179 517
MS.gene05028.t1 MTR_5g008820 45.355 549 251 5 1 514 1 535 4.34e-176 508
MS.gene05028.t1 MTR_5g076220 49.281 556 230 8 1 514 1 546 9.51e-176 508
MS.gene05028.t1 MTR_5g076200 47.662 556 239 8 1 514 1 546 1.08e-170 495
MS.gene05028.t1 MTR_0161s0050 46.085 562 241 6 1 514 1 548 1.19e-164 479
MS.gene05028.t1 MTR_8g074040 48.643 479 193 7 77 516 1 465 1.05e-163 474
MS.gene05028.t1 MTR_8g074120 47.035 489 206 6 67 516 20 494 6.38e-159 463
MS.gene05028.t1 MTR_2g044180 46.822 472 201 7 86 514 1 465 2.15e-142 419
MS.gene05028.t1 MTR_5g023730 38.267 554 284 11 3 514 4 541 8.57e-123 372
MS.gene05028.t1 MTR_0803s0020 30.037 536 305 11 14 509 235 740 6.71e-56 203
MS.gene05028.t1 MTR_2g105570 27.829 539 307 16 25 512 37 544 3.23e-42 159
MS.gene05028.t1 MTR_5g007640 27.390 544 312 14 18 512 73 582 6.11e-40 153
MS.gene05028.t1 MTR_4g057730 25.777 547 326 13 14 514 27 539 6.35e-40 152
MS.gene05028.t1 MTR_2g095510 27.848 553 306 18 14 515 27 537 9.28e-39 149
MS.gene05028.t1 MTR_3g460770 25.641 546 312 16 19 512 33 536 8.47e-36 141
MS.gene05028.t1 MTR_1g063110 26.825 548 314 18 14 509 28 540 6.72e-35 138
MS.gene05028.t1 MTR_1569s0010 32.249 369 176 12 192 511 186 529 8.78e-35 137
MS.gene05028.t1 MTR_3g035130 28.007 557 298 17 15 517 5 512 2.55e-34 136
MS.gene05028.t1 MTR_4g005750 27.687 549 303 18 25 519 36 544 2.98e-34 136
MS.gene05028.t1 MTR_1g026310 24.857 523 308 13 37 509 65 552 2.96e-32 130
MS.gene05028.t1 MTR_4g128337 25.636 550 313 16 18 512 35 543 3.31e-32 130
MS.gene05028.t1 MTR_8g039720 24.299 535 298 15 37 509 62 551 4.54e-32 130
MS.gene05028.t1 MTR_1g063120 25.405 555 317 16 14 509 28 544 2.15e-30 125
MS.gene05028.t1 MTR_1g090737 26.255 518 310 17 43 519 82 568 1.85e-28 119
MS.gene05028.t1 MTR_4g057730 24.841 471 281 12 14 438 27 470 4.23e-28 117
MS.gene05028.t1 MTR_1054s0020 25.996 527 313 18 27 514 281 769 2.42e-27 117
MS.gene05028.t1 MTR_1g073180 24.277 519 299 12 39 512 60 529 2.53e-27 116
MS.gene05028.t1 MTR_4g011790 26.531 392 212 13 179 510 217 592 1.70e-25 110
MS.gene05028.t1 MTR_3g035130 27.328 494 268 14 15 455 5 460 1.98e-25 109
MS.gene05028.t1 MTR_2g030240 24.170 542 313 18 39 510 27 540 2.08e-25 110
MS.gene05028.t1 MTR_4g011790 26.463 393 213 13 179 511 217 593 2.34e-25 110
MS.gene05028.t1 MTR_5g027480 25.568 528 297 19 36 510 64 548 6.24e-24 105
MS.gene05028.t1 MTR_4g013210 26.836 354 201 13 189 510 71 398 8.01e-24 104
MS.gene05028.t1 MTR_4g013210 26.410 390 198 13 189 510 71 439 1.55e-23 103
MS.gene05028.t1 MTR_4g013210 26.836 354 201 13 189 510 223 550 1.99e-23 104
MS.gene05028.t1 MTR_3g088870 26.849 365 197 10 194 509 207 550 2.73e-23 103
MS.gene05028.t1 MTR_2g030240 26.396 394 218 15 180 510 62 446 4.89e-23 102
MS.gene05028.t1 MTR_3g088880 27.446 368 188 12 194 509 208 548 1.03e-22 102
MS.gene05028.t1 MTR_4g011790 28.980 245 155 7 269 510 373 601 2.51e-22 101
MS.gene05028.t1 MTR_4g077900 34.839 155 93 2 357 510 324 471 3.41e-22 100
MS.gene05028.t1 MTR_5g027500 36.774 155 90 2 357 510 414 561 4.19e-22 100
MS.gene05028.t1 MTR_4g057730 23.789 454 273 12 14 421 27 453 6.86e-22 99.0
MS.gene05028.t1 MTR_1g073180 23.566 488 279 12 39 481 82 520 8.01e-22 99.4
MS.gene05028.t1 MTR_1586s0010 24.194 372 216 11 39 363 69 421 2.90e-21 96.7
MS.gene05028.t1 MTR_2g095510 27.009 448 241 17 14 410 27 439 1.50e-20 95.1
MS.gene05028.t1 MTR_4g013210 26.230 366 181 13 189 486 223 567 2.03e-17 85.9
MS.gene05028.t1 MTR_7g084850 33.918 171 96 4 352 513 558 720 2.32e-14 76.6
MS.gene05028.t1 MTR_7g109830 31.633 196 117 6 239 432 362 542 1.08e-13 74.3
MS.gene05028.t1 MTR_3g087980 33.000 200 100 8 269 447 422 608 4.99e-13 72.4
MS.gene05028.t1 MTR_1g030290 32.948 173 94 6 269 432 424 583 6.91e-12 68.6
MS.gene05028.t1 MTR_1g086600 31.737 167 99 6 269 432 412 566 1.75e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05028.t1 AT1G65880 58.596 570 182 6 1 523 1 563 0.0 653
MS.gene05028.t1 AT1G65890 57.785 578 194 6 1 533 1 573 0.0 652
MS.gene05028.t1 AT1G66120 56.282 581 202 6 1 538 1 572 0.0 646
MS.gene05028.t1 AT1G68270 56.506 538 213 6 1 523 1 532 0.0 592
MS.gene05028.t1 AT1G20560 47.090 567 245 5 1 526 3 555 0.0 525
MS.gene05028.t1 AT3G16910 49.372 557 233 8 1 514 9 559 1.83e-177 512
MS.gene05028.t1 AT5G16340 46.043 556 244 6 1 514 1 542 1.68e-175 506
MS.gene05028.t1 AT1G21530 47.263 548 241 7 9 516 9 548 7.08e-174 503
MS.gene05028.t1 AT5G16370 45.863 556 245 6 1 514 1 542 8.35e-174 502
MS.gene05028.t1 AT2G17650 46.964 560 240 6 1 513 48 597 2.88e-172 500
MS.gene05028.t1 AT1G21530 47.263 548 239 8 9 516 9 546 1.81e-171 496
MS.gene05028.t1 AT1G21540 46.196 552 242 7 9 516 9 549 8.82e-169 489
MS.gene05028.t1 AT1G75960 45.683 556 246 5 1 514 1 542 1.50e-166 484
MS.gene05028.t1 AT1G77240 44.727 550 248 7 9 516 9 544 1.04e-164 479
MS.gene05028.t1 AT1G20560 46.436 491 208 5 77 526 1 477 9.98e-151 441
MS.gene05028.t1 AT1G76290 43.525 556 251 9 1 514 1 535 1.16e-142 422
MS.gene05028.t1 AT3G21240 27.357 541 314 13 19 512 41 549 5.29e-45 167
MS.gene05028.t1 AT3G21230 28.000 525 297 11 37 512 71 563 3.77e-41 156
MS.gene05028.t1 AT1G51680 27.839 546 310 15 19 512 43 556 9.36e-39 149
MS.gene05028.t1 AT1G65060 27.239 547 307 18 18 512 52 559 2.92e-37 145
MS.gene05028.t1 AT4G05160 26.715 554 310 17 17 515 30 542 3.81e-37 145
MS.gene05028.t1 AT1G20510 26.047 549 301 20 18 509 36 536 8.00e-36 141
MS.gene05028.t1 AT1G20480 26.718 524 295 16 37 509 72 557 1.28e-35 140
MS.gene05028.t1 AT1G20500 23.941 543 320 15 18 509 42 542 1.60e-34 137
MS.gene05028.t1 AT3G21240 26.709 468 271 12 19 439 41 483 2.39e-33 133
MS.gene05028.t1 AT3G21240 26.709 468 271 12 19 439 41 483 2.39e-33 133
MS.gene05028.t1 AT3G48990 27.395 522 275 17 40 506 31 503 5.96e-33 132
MS.gene05028.t1 AT4G19010 25.328 533 306 14 31 510 62 555 1.09e-32 132
MS.gene05028.t1 AT1G51680 27.184 515 291 15 19 481 43 525 1.31e-32 131
MS.gene05028.t1 AT3G21230 26.721 494 281 11 37 481 71 532 1.34e-31 129
MS.gene05028.t1 AT5G38120 26.335 543 306 17 18 509 43 542 1.78e-31 128
MS.gene05028.t1 AT5G63380 25.641 546 292 19 17 509 66 550 2.10e-30 125
MS.gene05028.t1 AT1G62940 25.408 551 318 15 14 512 26 535 1.80e-29 122
MS.gene05028.t1 AT1G30520 25.271 554 335 16 20 512 13 548 1.09e-28 120
MS.gene05028.t1 AT1G30520 25.271 554 335 16 20 512 13 548 1.09e-28 120
MS.gene05028.t1 AT1G20510 26.151 478 255 18 18 438 36 472 3.38e-28 118
MS.gene05028.t1 AT1G51680 27.061 473 268 14 19 439 43 490 5.25e-27 114
MS.gene05028.t1 AT5G38120 25.825 515 288 16 18 481 43 514 6.30e-27 114
MS.gene05028.t1 AT3G21230 26.549 452 258 10 37 439 71 497 2.12e-26 113
MS.gene05028.t1 AT1G65060 26.742 445 242 17 18 410 52 464 1.41e-23 104
MS.gene05028.t1 AT5G38120 25.424 472 265 13 18 438 43 478 1.24e-22 101
MS.gene05028.t1 AT5G38120 25.424 472 265 13 18 438 43 478 1.24e-22 101
MS.gene05028.t1 AT1G20510 25.778 450 236 18 18 410 36 444 4.85e-22 99.8
MS.gene05028.t1 AT3G16170 31.098 164 108 3 352 510 438 601 6.19e-19 90.9
MS.gene05028.t1 AT1G64400 33.721 172 94 8 269 435 391 547 5.03e-14 75.5
MS.gene05028.t1 AT5G36880 32.941 170 99 4 352 513 503 665 4.42e-13 72.4
MS.gene05028.t1 AT5G36880 32.941 170 99 4 352 513 503 665 4.42e-13 72.4
MS.gene05028.t1 AT5G36880 32.941 170 99 4 352 513 503 665 4.42e-13 72.4
MS.gene05028.t1 AT5G36880 32.941 170 99 4 352 513 503 665 4.42e-13 72.4
MS.gene05028.t1 AT5G36880 31.737 167 105 3 352 513 553 715 4.75e-13 72.4
MS.gene05028.t1 AT4G23850 29.082 196 116 7 260 443 381 565 4.76e-12 69.3
MS.gene05028.t1 AT1G77590 32.558 172 96 6 269 432 274 433 1.02e-11 67.8
MS.gene05028.t1 AT1G77590 32.558 172 96 6 269 432 420 579 1.27e-11 67.8
MS.gene05028.t1 AT2G04350 29.658 263 140 12 269 514 449 683 2.09e-11 67.0
MS.gene05028.t1 AT2G04350 29.658 263 140 12 269 514 449 683 2.09e-11 67.0
MS.gene05028.t1 AT4G11030 31.868 182 103 9 260 435 381 547 3.19e-11 66.6
MS.gene05028.t1 AT2G47240 25.291 344 214 14 100 426 160 477 6.03e-11 65.5
MS.gene05028.t1 AT2G47240 26.857 350 201 16 100 426 219 536 8.04e-11 65.1
MS.gene05028.t1 AT2G47240 26.857 350 201 16 100 426 219 536 8.04e-11 65.1
MS.gene05028.t1 AT2G47240 26.857 350 201 16 100 426 219 536 8.04e-11 65.1

Find 133 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAATTTACCACACTTTA+TGG 0.126746 3.4:-66145260 MS.gene05028:CDS
TCTAAAGATGTGATTATTTC+AGG 0.185792 3.4:-66145478 MS.gene05028:CDS
CAAGGACTTTCACCCCATTT+TGG 0.195490 3.4:+66145367 None:intergenic
TATACATAAAGATGGTTATT+TGG 0.207931 3.4:-66145515 MS.gene05028:CDS
ATTTCTTCAGGAAGGTAATT+TGG 0.214710 3.4:+66146279 None:intergenic
ATCTTACCTGTTAAAGTCTT+TGG 0.233560 3.4:+66145205 None:intergenic
TTATGATTGACTTGATTATT+AGG 0.237452 3.4:+66145115 None:intergenic
GCTCTCATCAAGAAAGTTAA+AGG 0.239728 3.4:+66147138 None:intergenic
GAAGCGACGGCGAAAGCTTT+TGG 0.270816 3.4:-66145571 MS.gene05028:CDS
GATTTACCAAAGACTTTAAC+AGG 0.288395 3.4:-66145211 MS.gene05028:CDS
TTGCAATGCCACATCCAAAA+TGG 0.293682 3.4:-66145381 MS.gene05028:CDS
AATAAAACAGGTATCAGTTT+TGG 0.306205 3.4:-66146616 MS.gene05028:intron
TGACTATAAACAACACCTTT+TGG 0.314032 3.4:+66146201 None:intergenic
TCATAATAATGACCAGATTA+TGG 0.314754 3.4:-66145098 MS.gene05028:CDS
TTTCATGTAACACATGCTTA+TGG 0.320342 3.4:-66145829 MS.gene05028:CDS
GTATAGTTTGCTCGACATTT+TGG 0.327519 3.4:+66147171 None:intergenic
GAAAGTTAAAGGAGTGAGTA+TGG 0.331539 3.4:+66147149 None:intergenic
CATTCATCTTGAATTTCTTC+AGG 0.339619 3.4:+66146267 None:intergenic
TTTAATCCTTGGTTGGGAAA+TGG 0.345052 3.4:-66146151 MS.gene05028:CDS
GGTAATGTCCATAGATAAAC+TGG 0.364652 3.4:+66146120 None:intergenic
TTCCTCCATGAGTAATCTTA+AGG 0.365260 3.4:+66146422 None:intergenic
GGGGATGGTTGGTTTAGAAC+TGG 0.384146 3.4:-66145550 MS.gene05028:CDS
CGCATTGAGACGGTGGTTGA+TGG 0.387285 3.4:+66146527 None:intergenic
TCATACATTGCTGGAATGTT+TGG 0.387598 3.4:+66146591 None:intergenic
AAGTGAAACGGGTTCCTTCA+TGG 0.397922 3.4:+66147082 None:intergenic
TACCACAAAACACTTAGCTT+TGG 0.397967 3.4:+66145162 None:intergenic
TATGGTCTGACTGAGGCAAC+AGG 0.406278 3.4:-66145811 MS.gene05028:CDS
TGGTAAATTCTTCCTACAAT+AGG 0.411253 3.4:+66145270 None:intergenic
GTAAGAGATGGGAAAACAAT+GGG 0.423096 3.4:-66145646 MS.gene05028:CDS
GATGTGTAATTCAATGTAAT+TGG 0.423792 3.4:+66146240 None:intergenic
TTTGAGTTTAATCCTTGGTT+GGG 0.424831 3.4:-66146157 MS.gene05028:CDS
TTAATCCTTGGTTGGGAAAT+GGG 0.425386 3.4:-66146150 MS.gene05028:CDS
TTTGTGAGTGGCAGAAGAAA+TGG 0.427336 3.4:-66145777 MS.gene05028:CDS
TTACCTATGTTCCATTGTAA+TGG 0.427373 3.4:-66146102 MS.gene05028:CDS
GAGCTCGCCTAGCCGGATTC+CGG 0.428306 3.4:+66146332 None:intergenic
CTTCATGGATGACTGAGGTT+CGG 0.429624 3.4:+66147097 None:intergenic
AAATGCATCTCATACATTGC+TGG 0.433221 3.4:+66146582 None:intergenic
GTTATTTGGAAATTAAAGAT+AGG 0.433555 3.4:-66145501 MS.gene05028:CDS
GACGGTGGTTGATGGTGTTT+AGG 0.435440 3.4:+66146535 None:intergenic
GACGAGATAGAGCCATAATC+TGG 0.444504 3.4:+66145086 None:intergenic
GTAGTGAACCAGTTTATCTA+TGG 0.450766 3.4:-66146128 MS.gene05028:CDS
TGCAATGCCACATCCAAAAT+GGG 0.459922 3.4:-66145380 MS.gene05028:CDS
ACACTTTATGGTACCTAAGA+TGG 0.462947 3.4:-66145248 MS.gene05028:CDS
GAGATTATGTTGAAGGGAAG+TGG 0.465461 3.4:-66145622 MS.gene05028:CDS
AGTTTGTGACCAAGTGAAAC+GGG 0.471117 3.4:+66147071 None:intergenic
CTGAAGAAATTCAAGATGAA+TGG 0.471358 3.4:-66146266 MS.gene05028:CDS
ATGGAGAGTGTGGTAAGAGA+TGG 0.472523 3.4:-66145658 MS.gene05028:CDS
TAAACACTCCCACCGGAATC+CGG 0.473541 3.4:-66146344 MS.gene05028:CDS
CTATGTTCCATTGTAATGGT+TGG 0.477230 3.4:-66146098 MS.gene05028:CDS
CTTTGAGTTTAATCCTTGGT+TGG 0.482972 3.4:-66146158 MS.gene05028:CDS
CGCCTCAGAGTGTCGAAGAA+TGG 0.487931 3.4:+66146491 None:intergenic
ACAGCAGCTTCTAAAACCTT+AGG 0.490308 3.4:+66145406 None:intergenic
AAGTTTGTGACCAAGTGAAA+CGG 0.494196 3.4:+66147070 None:intergenic
TGCCACTCACAAACAAGTGC+TGG 0.499001 3.4:+66145787 None:intergenic
TGGTTTAGAACTGGTGATGT+TGG 0.499794 3.4:-66145541 MS.gene05028:CDS
TCTCCGGTGAATATACTAAC+CGG 0.501022 3.4:-66145901 MS.gene05028:CDS
ATGAGATAATTACCTATTGT+AGG 0.504104 3.4:-66145282 MS.gene05028:CDS
TGGAGAGTGTGGTAAGAGAT+GGG 0.505965 3.4:-66145657 MS.gene05028:CDS
ATTCGTATCAAAAGCAAAAG+AGG 0.506420 3.4:-66146445 MS.gene05028:CDS
AAGGGAAGTGGAATCATGAT+GGG 0.506638 3.4:-66145610 MS.gene05028:CDS
TGCAATATTGAGAGCACGGA+GGG 0.514867 3.4:+66147020 None:intergenic
CATCTTGAATTTCTTCAGGA+AGG 0.517226 3.4:+66146271 None:intergenic
AGGAAGCGAGGCGGCGACAC+CGG 0.518047 3.4:+66147043 None:intergenic
CGTATTCGAGCTCGCCTAGC+CGG 0.519450 3.4:+66146325 None:intergenic
CTTGAGAAAATCGAGCCACT+TGG 0.519790 3.4:-66145853 MS.gene05028:CDS
ATGAAGGAACCCGTTTCACT+TGG 0.520277 3.4:-66147080 MS.gene05028:CDS
AGTACTTTGAGTTTAATCCT+TGG 0.521867 3.4:-66146162 MS.gene05028:CDS
CTCGCCTAGCCGGATTCCGG+TGG 0.524552 3.4:+66146335 None:intergenic
AGAGGCCTTAAGATTACTCA+TGG 0.524889 3.4:-66146427 MS.gene05028:CDS
ATTACATTGAATTACACATC+AGG 0.525480 3.4:-66146237 MS.gene05028:CDS
CGAGCTCGAATACGAGCAAA+TGG 0.527362 3.4:-66146316 MS.gene05028:CDS
TGTTCTTTATAGTCATCCTA+AGG 0.533616 3.4:-66145422 MS.gene05028:CDS
AACCGGTGGAGCACCACCCC+CGG 0.538649 3.4:-66145884 MS.gene05028:CDS
TGTGACACTAAGGAAGAATG+AGG 0.538924 3.4:-66145338 MS.gene05028:CDS
GAAGGGAAGTGGAATCATGA+TGG 0.539328 3.4:-66145611 MS.gene05028:CDS
GTTGGTGTTATACATAAAGA+TGG 0.545404 3.4:-66145523 MS.gene05028:CDS
AAAGAGAGTCATAAAATCTC+CGG 0.548039 3.4:-66145917 MS.gene05028:CDS
TCGAAGAATGGTGGCTATGT+TGG 0.554863 3.4:+66146503 None:intergenic
CAACCATTACAATGGAACAT+AGG 0.559310 3.4:+66146099 None:intergenic
CACTACCCATTTCCCAACCA+AGG 0.560736 3.4:+66146145 None:intergenic
CACGGAGGGAGGAAGCGAGG+CGG 0.564152 3.4:+66147034 None:intergenic
GGTACAACTTCAGAACCAAA+AGG 0.565976 3.4:-66146216 MS.gene05028:CDS
TCTTTGCAATATTGAGAGCA+CGG 0.566149 3.4:+66147016 None:intergenic
CGATGCTGAAAGCGCGACAA+GGG 0.572970 3.4:-66145729 MS.gene05028:CDS
TACGAGCAAATGGTTCATCA+TGG 0.574224 3.4:-66146306 MS.gene05028:CDS
GTAATGGTTGGACATTCACT+TGG 0.575202 3.4:-66146086 MS.gene05028:CDS
CTTGGTCACAAACTTATGAC+CGG 0.576665 3.4:-66147062 MS.gene05028:CDS
CATCTATCACAATCACTAGT+GGG 0.580127 3.4:+66146370 None:intergenic
TCGATGCTGAAAGCGCGACA+AGG 0.582751 3.4:-66145730 MS.gene05028:CDS
GATGGTGTTTAGGACAGCAC+CGG 0.583797 3.4:+66146545 None:intergenic
TAATGGTTGGACATTCACTT+GGG 0.583819 3.4:-66146085 MS.gene05028:CDS
TTTAGGACAGCACCGGCCAT+AGG 0.587665 3.4:+66146552 None:intergenic
GAGCACGGAGGGAGGAAGCG+AGG 0.588763 3.4:+66147031 None:intergenic
TCTTGAAACAATGGAGAGTG+TGG 0.595422 3.4:-66145668 MS.gene05028:CDS
GGCCAGCACTTGTTTGTGAG+TGG 0.595693 3.4:-66145789 MS.gene05028:CDS
GGTGTTGTTTATAGTCATAG+AGG 0.595730 3.4:-66146195 MS.gene05028:CDS
TCATCTATCACAATCACTAG+TGG 0.596057 3.4:+66146369 None:intergenic
TGTGAAGAATCTTGAAACAA+TGG 0.596126 3.4:-66145677 MS.gene05028:CDS
ACTCCCACCGGAATCCGGCT+AGG 0.597247 3.4:-66146339 MS.gene05028:CDS
CGAACCTCAGTCATCCATGA+AGG 0.598539 3.4:-66147096 MS.gene05028:CDS
AAGAGATGGGAAAACAATGG+GGG 0.600740 3.4:-66145644 MS.gene05028:CDS
TTTCTCAAGTAGGGACGCCG+GGG 0.601501 3.4:+66145867 None:intergenic
CTATGTTGGCCGCATTGAGA+CGG 0.602111 3.4:+66146517 None:intergenic
CTCAGAGTGTCGAAGAATGG+TGG 0.608683 3.4:+66146494 None:intergenic
TGAATGTCCAACCATTACAA+TGG 0.613092 3.4:+66146091 None:intergenic
CCACCGGTTAGTATATTCAC+CGG 0.615355 3.4:+66145898 None:intergenic
GGTAAGAGATGGGAAAACAA+TGG 0.619269 3.4:-66145647 MS.gene05028:CDS
ACTTGGGGTGTAGCTGCAAG+AGG 0.619778 3.4:-66146069 MS.gene05028:CDS
TAAGAGATGGGAAAACAATG+GGG 0.626561 3.4:-66145645 MS.gene05028:CDS
GATGCTGAAAGCGCGACAAG+GGG 0.626984 3.4:-66145728 MS.gene05028:CDS
TCGCCTAGCCGGATTCCGGT+GGG 0.628633 3.4:+66146336 None:intergenic
AATATTGAGAGCACGGAGGG+AGG 0.632194 3.4:+66147023 None:intergenic
GATGACATAAACACTCCCAC+CGG 0.634917 3.4:-66146351 MS.gene05028:CDS
CTTAGTGTCACAAAAGCACA+AGG 0.636960 3.4:+66145349 None:intergenic
TTCTCAAGTAGGGACGCCGG+GGG 0.637975 3.4:+66145868 None:intergenic
TGTTGGCCGCATTGAGACGG+TGG 0.638475 3.4:+66146520 None:intergenic
CACCATTCTTCGACACTCTG+AGG 0.640216 3.4:-66146493 MS.gene05028:CDS
AATGGTTGGACATTCACTTG+GGG 0.644019 3.4:-66146084 MS.gene05028:CDS
AAAGATGTGATTATTTCAGG+AGG 0.649768 3.4:-66145475 MS.gene05028:CDS
ATGGTCTGACTGAGGCAACA+GGG 0.656587 3.4:-66145810 MS.gene05028:CDS
TGATTCTTGTTGTGTTACTG+AGG 0.660637 3.4:-66145305 MS.gene05028:CDS
ATCTTAGGTACCATAAAGTG+TGG 0.661614 3.4:+66145250 None:intergenic
GGCCTTAAGATTACTCATGG+AGG 0.667273 3.4:-66146424 MS.gene05028:CDS
CCGGTGAATATACTAACCGG+TGG 0.668788 3.4:-66145898 MS.gene05028:CDS
AGGGAAGTGGAATCATGATG+GGG 0.670807 3.4:-66145609 MS.gene05028:CDS
GACACTAAGGAAGAATGAGG+AGG 0.677688 3.4:-66145335 MS.gene05028:CDS
TGGGGTGTAGCTGCAAGAGG+AGG 0.680125 3.4:-66146066 MS.gene05028:intron
GGTTCCTTCATGGATGACTG+AGG 0.686748 3.4:+66147092 None:intergenic
TGTGTTACATGAAAACCAAG+TGG 0.709272 3.4:+66145838 None:intergenic
ACATGCTTATGGTCTGACTG+AGG 0.729298 3.4:-66145818 MS.gene05028:CDS
TTGCAATATTGAGAGCACGG+AGG 0.733139 3.4:+66147019 None:intergenic
CATCAACCACCGTCTCAATG+CGG 0.733801 3.4:-66146526 MS.gene05028:CDS
GCAATGCCACATCCAAAATG+GGG 0.748056 3.4:-66145379 MS.gene05028:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATGTTGAAAATAAT+GGG + chr3.4:66146309-66146328 None:intergenic 10.0%
!! TAAAATAATGTTGAAAATAA+TGG + chr3.4:66146310-66146329 None:intergenic 10.0%
!!! ATTATTTTCAACATTATTTT+AGG - chr3.4:66146309-66146328 MS.gene05028:CDS 10.0%
!! GAGATTTATAAAAACTAAAT+TGG - chr3.4:66145616-66145635 MS.gene05028:CDS 15.0%
!! GTTATTTGGAAATTAAAGAT+AGG - chr3.4:66146763-66146782 MS.gene05028:intron 20.0%
!! TATACATAAAGATGGTTATT+TGG - chr3.4:66146749-66146768 MS.gene05028:intron 20.0%
!! TATTACAATATTTGATACTG+CGG + chr3.4:66145535-66145554 None:intergenic 20.0%
!!! TGGTTTTTGTTTAATAAAAC+AGG - chr3.4:66145636-66145655 MS.gene05028:CDS 20.0%
!!! TTATGATTGACTTGATTATT+AGG + chr3.4:66147152-66147171 None:intergenic 20.0%
! ATGAGATAATTACCTATTGT+AGG - chr3.4:66146982-66147001 MS.gene05028:intron 25.0%
! ATTACATTGAATTACACATC+AGG - chr3.4:66146027-66146046 MS.gene05028:intron 25.0%
! CAAAATGCAGTATCAAATAT+TGG + chr3.4:66145511-66145530 None:intergenic 25.0%
! GATGTGTAATTCAATGTAAT+TGG + chr3.4:66146027-66146046 None:intergenic 25.0%
! TCATAATAATGACCAGATTA+TGG - chr3.4:66147166-66147185 MS.gene05028:CDS 25.0%
! TCTAAAGATGTGATTATTTC+AGG - chr3.4:66146786-66146805 MS.gene05028:intron 25.0%
! TGTCACATTATAGAGATTTA+TGG + chr3.4:66146271-66146290 None:intergenic 25.0%
!! AATAAAACAGGTATCAGTTT+TGG - chr3.4:66145648-66145667 MS.gene05028:CDS 25.0%
!!! TTTTAAAGATAAAGAAGCGA+CGG - chr3.4:66146680-66146699 MS.gene05028:intron 25.0%
AAAGAGAGTCATAAAATCTC+CGG - chr3.4:66146347-66146366 MS.gene05028:CDS 30.0%
AAAGATGTGATTATTTCAGG+AGG - chr3.4:66146789-66146808 MS.gene05028:intron 30.0%
ATCTTACCTGTTAAAGTCTT+TGG + chr3.4:66147062-66147081 None:intergenic 30.0%
ATTCGTATCAAAAGCAAAAG+AGG - chr3.4:66145819-66145838 MS.gene05028:CDS 30.0%
ATTTCTTCAGGAAGGTAATT+TGG + chr3.4:66145988-66146007 None:intergenic 30.0%
CATTCATCTTGAATTTCTTC+AGG + chr3.4:66146000-66146019 None:intergenic 30.0%
CTGAAGAAATTCAAGATGAA+TGG - chr3.4:66145998-66146017 MS.gene05028:intron 30.0%
GAAGAATTTACCACACTTTA+TGG - chr3.4:66147004-66147023 MS.gene05028:intron 30.0%
GATTTACCAAAGACTTTAAC+AGG - chr3.4:66147053-66147072 MS.gene05028:CDS 30.0%
TCCATAAAAACAACCATCTT+AGG + chr3.4:66147032-66147051 None:intergenic 30.0%
TGATATCATTTCCTAGATTG+CGG + chr3.4:66145473-66145492 None:intergenic 30.0%
TGGTAAATTCTTCCTACAAT+AGG + chr3.4:66146997-66147016 None:intergenic 30.0%
TGTGAAGAATCTTGAAACAA+TGG - chr3.4:66146587-66146606 MS.gene05028:CDS 30.0%
TGTTCTTTATAGTCATCCTA+AGG - chr3.4:66146842-66146861 MS.gene05028:intron 30.0%
TTACCTATGTTCCATTGTAA+TGG - chr3.4:66146162-66146181 MS.gene05028:CDS 30.0%
TTTCATGTAACACATGCTTA+TGG - chr3.4:66146435-66146454 MS.gene05028:CDS 30.0%
! AGTACTTTGAGTTTAATCCT+TGG - chr3.4:66146102-66146121 MS.gene05028:CDS 30.0%
! TGACTATAAACAACACCTTT+TGG + chr3.4:66146066-66146085 None:intergenic 30.0%
! TTTGAGTTTAATCCTTGGTT+GGG - chr3.4:66146107-66146126 MS.gene05028:CDS 30.0%
!! GTTGGTGTTATACATAAAGA+TGG - chr3.4:66146741-66146760 MS.gene05028:intron 30.0%
!!! ACCTAAGATGGTTGTTTTTA+TGG - chr3.4:66147028-66147047 MS.gene05028:CDS 30.0%
!!! TAAGATGGTTGTTTTTATGG+AGG - chr3.4:66147031-66147050 MS.gene05028:CDS 30.0%
AAATGCATCTCATACATTGC+TGG + chr3.4:66145685-66145704 None:intergenic 35.0%
AAGTTTGTGACCAAGTGAAA+CGG + chr3.4:66145197-66145216 None:intergenic 35.0%
ACACTTTATGGTACCTAAGA+TGG - chr3.4:66147016-66147035 MS.gene05028:CDS 35.0%
ATCTTAGGTACCATAAAGTG+TGG + chr3.4:66147017-66147036 None:intergenic 35.0%
CAACCATTACAATGGAACAT+AGG + chr3.4:66146168-66146187 None:intergenic 35.0%
CATCTATCACAATCACTAGT+GGG + chr3.4:66145897-66145916 None:intergenic 35.0%
CATCTTGAATTTCTTCAGGA+AGG + chr3.4:66145996-66146015 None:intergenic 35.0%
CTATGTTCCATTGTAATGGT+TGG - chr3.4:66146166-66146185 MS.gene05028:CDS 35.0%
GAAAGTTAAAGGAGTGAGTA+TGG + chr3.4:66145118-66145137 None:intergenic 35.0%
GCTCTCATCAAGAAAGTTAA+AGG + chr3.4:66145129-66145148 None:intergenic 35.0%
GGTAATGTCCATAGATAAAC+TGG + chr3.4:66146147-66146166 None:intergenic 35.0%
GTAAGAGATGGGAAAACAAT+GGG - chr3.4:66146618-66146637 MS.gene05028:intron 35.0%
GTAGTGAACCAGTTTATCTA+TGG - chr3.4:66146136-66146155 MS.gene05028:CDS 35.0%
TAAGAGATGGGAAAACAATG+GGG - chr3.4:66146619-66146638 MS.gene05028:intron 35.0%
TAATGGTTGGACATTCACTT+GGG - chr3.4:66146179-66146198 MS.gene05028:CDS 35.0%
TACCACAAAACACTTAGCTT+TGG + chr3.4:66147105-66147124 None:intergenic 35.0%
TCATACATTGCTGGAATGTT+TGG + chr3.4:66145676-66145695 None:intergenic 35.0%
TCATCTATCACAATCACTAG+TGG + chr3.4:66145898-66145917 None:intergenic 35.0%
TCTTTGCAATATTGAGAGCA+CGG + chr3.4:66145251-66145270 None:intergenic 35.0%
TGAATGTCCAACCATTACAA+TGG + chr3.4:66146176-66146195 None:intergenic 35.0%
TGTGTTACATGAAAACCAAG+TGG + chr3.4:66146429-66146448 None:intergenic 35.0%
TTAATCCTTGGTTGGGAAAT+GGG - chr3.4:66146114-66146133 MS.gene05028:CDS 35.0%
TTCCTCCATGAGTAATCTTA+AGG + chr3.4:66145845-66145864 None:intergenic 35.0%
TTTAATCCTTGGTTGGGAAA+TGG - chr3.4:66146113-66146132 MS.gene05028:CDS 35.0%
! CTTTGAGTTTAATCCTTGGT+TGG - chr3.4:66146106-66146125 MS.gene05028:CDS 35.0%
! TGATTCTTGTTGTGTTACTG+AGG - chr3.4:66146959-66146978 MS.gene05028:intron 35.0%
! TTTATGACTCTCTTTTCGCT+TGG + chr3.4:66146342-66146361 None:intergenic 35.0%
!! GGTGTTGTTTATAGTCATAG+AGG - chr3.4:66146069-66146088 MS.gene05028:CDS 35.0%
!!! GTATAGTTTGCTCGACATTT+TGG + chr3.4:66145096-66145115 None:intergenic 35.0%
AAGAGATGGGAAAACAATGG+GGG - chr3.4:66146620-66146639 MS.gene05028:intron 40.0%
AAGGGAAGTGGAATCATGAT+GGG - chr3.4:66146654-66146673 MS.gene05028:intron 40.0%
AATGGGGGAGATTATGTTGA+AGG - chr3.4:66146635-66146654 MS.gene05028:intron 40.0%
AATGGTTGGACATTCACTTG+GGG - chr3.4:66146180-66146199 MS.gene05028:CDS 40.0%
AGAGGCCTTAAGATTACTCA+TGG - chr3.4:66145837-66145856 MS.gene05028:CDS 40.0%
AGTTTGTGACCAAGTGAAAC+GGG + chr3.4:66145196-66145215 None:intergenic 40.0%
ATGGGGGAGATTATGTTGAA+GGG - chr3.4:66146636-66146655 MS.gene05028:intron 40.0%
CTTGGTCACAAACTTATGAC+CGG - chr3.4:66145202-66145221 MS.gene05028:CDS 40.0%
GAGATTATGTTGAAGGGAAG+TGG - chr3.4:66146642-66146661 MS.gene05028:intron 40.0%
GGTAAGAGATGGGAAAACAA+TGG - chr3.4:66146617-66146636 MS.gene05028:intron 40.0%
GGTACAACTTCAGAACCAAA+AGG - chr3.4:66146048-66146067 MS.gene05028:intron 40.0%
GTAATGGTTGGACATTCACT+TGG - chr3.4:66146178-66146197 MS.gene05028:CDS 40.0%
TACGAGCAAATGGTTCATCA+TGG - chr3.4:66145958-66145977 MS.gene05028:intron 40.0%
TCTCCGGTGAATATACTAAC+CGG - chr3.4:66146363-66146382 MS.gene05028:CDS 40.0%
TCTTGAAACAATGGAGAGTG+TGG - chr3.4:66146596-66146615 MS.gene05028:CDS 40.0%
TGCAATGCCACATCCAAAAT+GGG - chr3.4:66146884-66146903 MS.gene05028:intron 40.0%
TGTGACACTAAGGAAGAATG+AGG - chr3.4:66146926-66146945 MS.gene05028:intron 40.0%
TTGCAATGCCACATCCAAAA+TGG - chr3.4:66146883-66146902 MS.gene05028:intron 40.0%
TTTGTGAGTGGCAGAAGAAA+TGG - chr3.4:66146487-66146506 MS.gene05028:CDS 40.0%
! AGCCAAAGCTAAGTGTTTTG+TGG - chr3.4:66147100-66147119 MS.gene05028:CDS 40.0%
! CTTAGTGTCACAAAAGCACA+AGG + chr3.4:66146918-66146937 None:intergenic 40.0%
! CTTGTGCTTTTGTGACACTA+AGG - chr3.4:66146916-66146935 MS.gene05028:intron 40.0%
! GATGCATTTTGCAGTACCTA+TGG - chr3.4:66145696-66145715 MS.gene05028:CDS 40.0%
! TGGCTCGATTTTCTCAAGTA+GGG + chr3.4:66146409-66146428 None:intergenic 40.0%
! TGGTTTAGAACTGGTGATGT+TGG - chr3.4:66146723-66146742 MS.gene05028:intron 40.0%
!! ACAGCAGCTTCTAAAACCTT+AGG + chr3.4:66146861-66146880 None:intergenic 40.0%
!! AGTTTGCTCGACATTTTGGT+AGG + chr3.4:66145092-66145111 None:intergenic 40.0%
!!! AGCATCGATTGCTCTCTTTT+CGG + chr3.4:66146522-66146541 None:intergenic 40.0%
ACATGCTTATGGTCTGACTG+AGG - chr3.4:66146446-66146465 MS.gene05028:CDS 45.0%
AGGGAAGTGGAATCATGATG+GGG - chr3.4:66146655-66146674 MS.gene05028:intron 45.0%
ATGAAGGAACCCGTTTCACT+TGG - chr3.4:66145184-66145203 MS.gene05028:CDS 45.0%
CTTCATGGATGACTGAGGTT+CGG + chr3.4:66145170-66145189 None:intergenic 45.0%
CTTGAGAAAATCGAGCCACT+TGG - chr3.4:66146411-66146430 MS.gene05028:CDS 45.0%
GAAGGGAAGTGGAATCATGA+TGG - chr3.4:66146653-66146672 MS.gene05028:intron 45.0%
GACACTAAGGAAGAATGAGG+AGG - chr3.4:66146929-66146948 MS.gene05028:intron 45.0%
GACGAGATAGAGCCATAATC+TGG + chr3.4:66147181-66147200 None:intergenic 45.0%
GATGACATAAACACTCCCAC+CGG - chr3.4:66145913-66145932 MS.gene05028:CDS 45.0%
GCAATGCCACATCCAAAATG+GGG - chr3.4:66146885-66146904 MS.gene05028:intron 45.0%
GGCCTTAAGATTACTCATGG+AGG - chr3.4:66145840-66145859 MS.gene05028:CDS 45.0%
TCGAAGAATGGTGGCTATGT+TGG + chr3.4:66145764-66145783 None:intergenic 45.0%
! AAGTGAAACGGGTTCCTTCA+TGG + chr3.4:66145185-66145204 None:intergenic 45.0%
! ATGGAGAGTGTGGTAAGAGA+TGG - chr3.4:66146606-66146625 MS.gene05028:CDS 45.0%
! ATTTTCTCAAGTAGGGACGC+CGG + chr3.4:66146402-66146421 None:intergenic 45.0%
! CAAGGACTTTCACCCCATTT+TGG + chr3.4:66146900-66146919 None:intergenic 45.0%
! CATTTTGCAGTACCTATGGC+CGG - chr3.4:66145700-66145719 MS.gene05028:CDS 45.0%
! CCACCGGTTAGTATATTCAC+CGG + chr3.4:66146369-66146388 None:intergenic 45.0%
! CTTTCACCCCATTTTGGATG+TGG + chr3.4:66146894-66146913 None:intergenic 45.0%
! GTGGCTCGATTTTCTCAAGT+AGG + chr3.4:66146410-66146429 None:intergenic 45.0%
! TGCAATATTGAGAGCACGGA+GGG + chr3.4:66145247-66145266 None:intergenic 45.0%
! TGGAGAGTGTGGTAAGAGAT+GGG - chr3.4:66146607-66146626 MS.gene05028:CDS 45.0%
! TTGCAATATTGAGAGCACGG+AGG + chr3.4:66145248-66145267 None:intergenic 45.0%
ATGGTCTGACTGAGGCAACA+GGG - chr3.4:66146454-66146473 MS.gene05028:CDS 50.0%
CACCATTCTTCGACACTCTG+AGG - chr3.4:66145771-66145790 MS.gene05028:CDS 50.0%
CACTACCCATTTCCCAACCA+AGG + chr3.4:66146122-66146141 None:intergenic 50.0%
CATCAACCACCGTCTCAATG+CGG - chr3.4:66145738-66145757 MS.gene05028:CDS 50.0%
CCGGTGAATATACTAACCGG+TGG - chr3.4:66146366-66146385 MS.gene05028:CDS 50.0%
CGAACCTCAGTCATCCATGA+AGG - chr3.4:66145168-66145187 MS.gene05028:CDS 50.0%
CGAGCTCGAATACGAGCAAA+TGG - chr3.4:66145948-66145967 MS.gene05028:intron 50.0%
CTATGTTGGCCGCATTGAGA+CGG + chr3.4:66145750-66145769 None:intergenic 50.0%
GGTTCCTTCATGGATGACTG+AGG + chr3.4:66145175-66145194 None:intergenic 50.0%
TAAACACTCCCACCGGAATC+CGG - chr3.4:66145920-66145939 MS.gene05028:CDS 50.0%
TAGATCAGCGACCGCAATCT+AGG - chr3.4:66145459-66145478 MS.gene05028:CDS 50.0%
TAGATTGCGGTCGCTGATCT+AGG + chr3.4:66145460-66145479 None:intergenic 50.0%
TATGGTCTGACTGAGGCAAC+AGG - chr3.4:66146453-66146472 MS.gene05028:CDS 50.0%
TGCCACTCACAAACAAGTGC+TGG + chr3.4:66146480-66146499 None:intergenic 50.0%
! AAGCGACGGCGAAAGCTTTT+GGG - chr3.4:66146694-66146713 MS.gene05028:intron 50.0%
! AATATTGAGAGCACGGAGGG+AGG + chr3.4:66145244-66145263 None:intergenic 50.0%
! GATGGTGTTTAGGACAGCAC+CGG + chr3.4:66145722-66145741 None:intergenic 50.0%
! TTTTCTCAAGTAGGGACGCC+GGG + chr3.4:66146401-66146420 None:intergenic 50.0%
!! CGAAAGCTTTTGGGGATGGT+TGG - chr3.4:66146703-66146722 MS.gene05028:intron 50.0%
!! CTCAGAGTGTCGAAGAATGG+TGG + chr3.4:66145773-66145792 None:intergenic 50.0%
!! GACGGTGGTTGATGGTGTTT+AGG + chr3.4:66145732-66145751 None:intergenic 50.0%
!! GGGGATGGTTGGTTTAGAAC+TGG - chr3.4:66146714-66146733 MS.gene05028:intron 50.0%
ACTTGGGGTGTAGCTGCAAG+AGG - chr3.4:66146195-66146214 MS.gene05028:CDS 55.0%
CGCATTGAGACGGTGGTTGA+TGG + chr3.4:66145740-66145759 None:intergenic 55.0%
GGCCAGCACTTGTTTGTGAG+TGG - chr3.4:66146475-66146494 MS.gene05028:CDS 55.0%
TTTCTCAAGTAGGGACGCCG+GGG + chr3.4:66146400-66146419 None:intergenic 55.0%
! AGCGACGGCGAAAGCTTTTG+GGG - chr3.4:66146695-66146714 MS.gene05028:intron 55.0%
! CGATGCTGAAAGCGCGACAA+GGG - chr3.4:66146535-66146554 MS.gene05028:CDS 55.0%
! GAAGCGACGGCGAAAGCTTT+TGG - chr3.4:66146693-66146712 MS.gene05028:intron 55.0%
! GATGCTGAAAGCGCGACAAG+GGG - chr3.4:66146536-66146555 MS.gene05028:CDS 55.0%
! TCGATGCTGAAAGCGCGACA+AGG - chr3.4:66146534-66146553 MS.gene05028:CDS 55.0%
!! ACGGCGAAAGCTTTTGGGGA+TGG - chr3.4:66146699-66146718 MS.gene05028:intron 55.0%
!! CGCCTCAGAGTGTCGAAGAA+TGG + chr3.4:66145776-66145795 None:intergenic 55.0%
!! TTTAGGACAGCACCGGCCAT+AGG + chr3.4:66145715-66145734 None:intergenic 55.0%
CGTATTCGAGCTCGCCTAGC+CGG + chr3.4:66145942-66145961 None:intergenic 60.0%
TGGGGTGTAGCTGCAAGAGG+AGG - chr3.4:66146198-66146217 MS.gene05028:CDS 60.0%
TGTTGGCCGCATTGAGACGG+TGG + chr3.4:66145747-66145766 None:intergenic 60.0%
TTCTCAAGTAGGGACGCCGG+GGG + chr3.4:66146399-66146418 None:intergenic 60.0%
ACTCCCACCGGAATCCGGCT+AGG - chr3.4:66145925-66145944 MS.gene05028:CDS 65.0%
GAGCTCGCCTAGCCGGATTC+CGG + chr3.4:66145935-66145954 None:intergenic 65.0%
TCGCCTAGCCGGATTCCGGT+GGG + chr3.4:66145931-66145950 None:intergenic 65.0%
AGGAAGCGAGGCGGCGACAC+CGG + chr3.4:66145224-66145243 None:intergenic 70.0%
CACGGAGGGAGGAAGCGAGG+CGG + chr3.4:66145233-66145252 None:intergenic 70.0%
CTCGCCTAGCCGGATTCCGG+TGG + chr3.4:66145932-66145951 None:intergenic 70.0%
GAGCACGGAGGGAGGAAGCG+AGG + chr3.4:66145236-66145255 None:intergenic 70.0%
TCAAGTAGGGACGCCGGGGG+TGG + chr3.4:66146396-66146415 None:intergenic 70.0%
! AACCGGTGGAGCACCACCCC+CGG - chr3.4:66146380-66146399 MS.gene05028:CDS 70.0%
! CGCCGGGGGTGGTGCTCCAC+CGG + chr3.4:66146385-66146404 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 66145081 66147205 66145081 ID=MS.gene05028
chr3.4 mRNA 66145081 66147205 66145081 ID=MS.gene05028.t1;Parent=MS.gene05028
chr3.4 exon 66147008 66147205 66147008 ID=MS.gene05028.t1.exon1;Parent=MS.gene05028.t1
chr3.4 CDS 66147008 66147205 66147008 ID=cds.MS.gene05028.t1;Parent=MS.gene05028.t1
chr3.4 exon 66146067 66146628 66146067 ID=MS.gene05028.t1.exon2;Parent=MS.gene05028.t1
chr3.4 CDS 66146067 66146628 66146067 ID=cds.MS.gene05028.t1;Parent=MS.gene05028.t1
chr3.4 exon 66145081 66145955 66145081 ID=MS.gene05028.t1.exon3;Parent=MS.gene05028.t1
chr3.4 CDS 66145081 66145955 66145081 ID=cds.MS.gene05028.t1;Parent=MS.gene05028.t1
Gene Sequence

>MS.gene05028

ATGGATAACCTACCAAAATGTCGAGCAAACTATACCATACTCACTCCTTTAACTTTCTTGATGAGAGCTTCTGCATCTTATGCAAACCGAACCTCAGTCATCCATGAAGGAACCCGTTTCACTTGGTCACAAACTTATGACCGGTGTCGCCGCCTCGCTTCCTCCCTCCGTGCTCTCAATATTGCAAAGAATGATGTTGTAAGTTCGTCACTAAATCGTGTTTTTCAAGTAGTACACAAACATCAAAGTATATAAGTATTCAAATCTCAATAAAAATTCATGCATTCATATATATTGTATTTGATTGCAATTTTTTTGCATTATCGAGTATTGTGACTTAAATGAGATTGCAATTTAAAACGTTACATGTTCATTTCCTAGATCAGCGACCGCAATCTAGGAAATGATATCAAGTAAAATTGTATTACCAATATTTGATACTGCATTTTGTCCGCAGTATCAAATATTGTAATAATACACTAACTCAACGTGACTACAATTCAAAATGTTACATACTATTATGATTAAGATTCGCGAGATTTATAAAAACTAAATTGGTTTTTGTTTAATAAAACAGGTATCAGTTTTGGCACCAAACATTCCAGCAATGTATGAGATGCATTTTGCAGTACCTATGGCCGGTGCTGTCCTAAACACCATCAACCACCGTCTCAATGCGGCCAACATAGCCACCATTCTTCGACACTCTGAGGCGAAAGTCTTCTTCGTAGACTACGAATTCGTATCAAAAGCAAAAGAGGCCTTAAGATTACTCATGGAGGAAAAAGATCAAAAAGAACAATACTCATCACTCCCACTAGTGATTGTGATAGATGACATAAACACTCCCACCGGAATCCGGCTAGGCGAGCTCGAATACGAGCAAATGGTTCATCATGGTAATCCAAATTACCTTCCTGAAGAAATTCAAGATGAATGGTCACCAATTACATTGAATTACACATCAGGTACAACTTCAGAACCAAAAGGTGTTGTTTATAGTCATAGAGGAGCTTATTTAAGTACTTTGAGTTTAATCCTTGGTTGGGAAATGGGTAGTGAACCAGTTTATCTATGGACATTACCTATGTTCCATTGTAATGGTTGGACATTCACTTGGGGTGTAGCTGCAAGAGGAGGTACTAATATTTGTATCAGAAACACTGCAGCATCTGATATATATAGAGCCATAAATCTCTATAATGTGACACACATGTGTTGCGCACCCATTATTTTCAACATTATTTTAGGCGCGAAACCAAGCGAAAAGAGAGTCATAAAATCTCCGGTGAATATACTAACCGGTGGAGCACCACCCCCGGCGTCCCTACTTGAGAAAATCGAGCCACTTGGTTTTCATGTAACACATGCTTATGGTCTGACTGAGGCAACAGGGCCAGCACTTGTTTGTGAGTGGCAGAAGAAATGGAATGTGTTGCCGAAAAGAGAGCAATCGATGCTGAAAGCGCGACAAGGGGTTAGTGTTTTGACACTTGCTGATGTTGATGTGAAGAATCTTGAAACAATGGAGAGTGTGGTAAGAGATGGGAAAACAATGGGGGAGATTATGTTGAAGGGAAGTGGAATCATGATGGGGTATTTTAAAGATAAAGAAGCGACGGCGAAAGCTTTTGGGGATGGTTGGTTTAGAACTGGTGATGTTGGTGTTATACATAAAGATGGTTATTTGGAAATTAAAGATAGGTCTAAAGATGTGATTATTTCAGGAGGTGAAAATATTAGTAGTGTTGAAGTTGAAAATGTTCTTTATAGTCATCCTAAGGTTTTAGAAGCTGCTGTTGTTGCAATGCCACATCCAAAATGGGGTGAAAGTCCTTGTGCTTTTGTGACACTAAGGAAGAATGAGGAGGAAAAAAGTGATTCTTGTTGTGTTACTGAGGATGAGATAATTACCTATTGTAGGAAGAATTTACCACACTTTATGGTACCTAAGATGGTTGTTTTTATGGAGGATTTACCAAAGACTTTAACAGGTAAGATTCAGAAATTTGAATTAAGAGCCAAAGCTAAGTGTTTTGTGGTAAATGATGAGAAGAATAAGAAGAAGCCTAATAATCAAGTCAATCATAATAATGACCAGATTATGGCTCTATCTCGTCTTTGA
Protein sequence

>MS.gene05028.t1

MDNLPKCRANYTILTPLTFLMRASASYANRTSVIHEGTRFTWSQTYDRCRRLASSLRALNIAKNDVVSVLAPNIPAMYEMHFAVPMAGAVLNTINHRLNAANIATILRHSEAKVFFVDYEFVSKAKEALRLLMEEKDQKEQYSSLPLVIVIDDINTPTGIRLGELEYEQMVHHGNPNYLPEEIQDEWSPITLNYTSGTTSEPKGVVYSHRGAYLSTLSLILGWEMGSEPVYLWTLPMFHCNGWTFTWGVAARGGAKPSEKRVIKSPVNILTGGAPPPASLLEKIEPLGFHVTHAYGLTEATGPALVCEWQKKWNVLPKREQSMLKARQGVSVLTLADVDVKNLETMESVVRDGKTMGEIMLKGSGIMMGYFKDKEATAKAFGDGWFRTGDVGVIHKDGYLEIKDRSKDVIISGGENISSVEVENVLYSHPKVLEAAVVAMPHPKWGESPCAFVTLRKNEEEKSDSCCVTEDEIITYCRKNLPHFMVPKMVVFMEDLPKTLTGKIQKFELRAKAKCFVVNDEKNKKKPNNQVNHNNDQIMALSRL