AlfalfaGEDB | MS.gene018042

M. sativa cultivar XinJiangDaYe / MS.gene018042

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF19160.3

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018042.t1	KEH23688.1	88.9	622	62	3	1	621	1	616	1.30E-302	1048.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018042.t1	P93050	57.2	608	250	4	17	619	12	614	8.2e-197	688.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018042.t1	A0A072U1U3	88.9	622	62	3	1	621	1	616	9.4e-303	1048.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene018042	MS.gene070509	PPI
MS.gene018042	MS.gene55142	PPI
MS.gene018042	MS.gene81617	PPI
MS.gene018042	MS.gene060393	PPI
MS.gene018042	MS.gene016743	PPI
MS.gene018042	MS.gene057886	PPI
MS.gene018042	MS.gene070503	PPI
MS.gene018042	MS.gene070507	PPI
MS.gene018042	MS.gene81620	PPI
MS.gene018042	MS.gene057883	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018042.t1	MTR_7g094100	92.093	645	47	2	18	661	15	656	0.0	1213
MS.gene018042.t1	MTR_7g094100	92.093	645	47	2	18	661	15	656	0.0	1213
MS.gene018042.t1	MTR_1g089600	64.420	638	211	8	1	627	7	639	0.0	810
MS.gene018042.t1	MTR_1g029610	38.422	583	337	12	10	581	7	578	3.19e-129	394
MS.gene018042.t1	MTR_2g006910	38.211	615	336	18	3	581	5	611	5.62e-122	377
MS.gene018042.t1	MTR_2g006910	38.049	615	337	17	3	581	5	611	8.51e-122	376
MS.gene018042.t1	MTR_8g088780	37.205	594	336	18	18	579	22	610	4.97e-105	332
MS.gene018042.t1	MTR_8g088760	33.846	585	329	16	23	578	21	576	4.07e-94	303
MS.gene018042.t1	MTR_2g103950	43.149	343	184	4	278	614	28	365	2.69e-85	272
MS.gene018042.t1	MTR_4g069970	44.710	293	155	2	278	568	128	415	2.26e-80	261

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018042.t1	AT2G48010	58.891	613	238	5	3	610	2	605	0.0	737
MS.gene018042.t1	AT1G11050	38.103	580	325	15	26	581	26	595	5.75e-112	350
MS.gene018042.t1	AT1G01540	44.027	293	157	2	278	568	142	429	3.01e-80	263
MS.gene018042.t1	AT4G01330	43.345	293	159	2	278	568	150	437	5.54e-78	256
MS.gene018042.t1	AT4G01330	43.345	293	159	2	278	568	150	437	8.65e-78	256
MS.gene018042.t1	AT4G01330	43.345	293	159	2	278	568	150	437	8.79e-78	256
MS.gene018042.t1	AT3G24540	40.845	355	178	6	221	565	125	457	2.66e-77	255
MS.gene018042.t1	AT1G56120	40.051	392	201	6	180	570	460	818	6.70e-77	263
MS.gene018042.t1	AT3G59110	44.369	293	156	2	278	568	178	465	1.14e-76	254
MS.gene018042.t1	AT1G56120	40.051	392	201	6	180	570	608	966	2.84e-76	264

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Find 174 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCATCGGAAAGTGAAG+CGG	0.641202	7.1:+13604690	None:intergenic
AAAGGCGCTTGAAACAAATG+AGG	0.646329	7.1:-13603759	MS.gene018042:CDS
AAATCTGCTAGCAATAACTC+GGG	0.670311	7.1:-13603467	MS.gene018042:CDS
AACCGTCGCCGATGTGGCGG+AGG	0.498175	7.1:+13605136	None:intergenic
AAGAAAAGGGGAATTATAAT+AGG	0.364747	7.1:-13604492	MS.gene018042:CDS
AAGTAGAAGCACGCCGACTT+TGG	0.425559	7.1:+13603399	None:intergenic
AAGTGAAGCGGCGTAAATAG+CGG	0.651664	7.1:+13604702	None:intergenic
AATAGGACTGAGATTGTGAT+AGG	0.393783	7.1:-13604475	MS.gene018042:CDS
AATTCTTGAGAAGTATGTGT+TGG	0.645275	7.1:-13603633	MS.gene018042:CDS
ACAATCGGAGACGTTACTGA+CGG	0.715000	7.1:+13604735	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATACTTCTCAAGAATTTC+TGG	+	chr7.1:13604870-13604889	None:intergenic	30.0%
ACTGCTACTACTAATTTAGA+AGG	-	chr7.1:13604330-13604349	MS.gene018042:CDS	30.0%
ATATCCCTATGAATAATCGA+AGG	+	chr7.1:13604510-13604529	None:intergenic	30.0%
ATGAGATTAAGAAAGCAACT+AGG	-	chr7.1:13604112-13604131	MS.gene018042:CDS	30.0%
TAATGAAGAGGAAGAAAACT+CGG	-	chr7.1:13605130-13605149	MS.gene018042:CDS	30.0%
TTGAAGTTATTGCTAGTGTT+AGG	-	chr7.1:13604274-13604293	MS.gene018042:CDS	30.0%
TTTAAGAATTGTTCTGTTGC+CGG	-	chr7.1:13604228-13604247	MS.gene018042:CDS	30.0%
AAATCTGCTAGCAATAACTC+GGG	-	chr7.1:13605038-13605057	MS.gene018042:CDS	35.0%
AATAGGACTGAGATTGTGAT+AGG	-	chr7.1:13604030-13604049	MS.gene018042:CDS	35.0%
ACTCCCATTCTCCATTAAAT+CGG	+	chr7.1:13604376-13604395	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	13603271	13605256	13603271	ID=MS.gene018042
chr7.1	mRNA	13603271	13605256	13603271	ID=MS.gene018042.t1;Parent=MS.gene018042
chr7.1	exon	13603271	13605256	13603271	ID=MS.gene018042.t1.exon1;Parent=MS.gene018042.t1
chr7.1	CDS	13603271	13605256	13603271	ID=cds.MS.gene018042.t1;Parent=MS.gene018042.t1

Gene Sequence

>MS.gene018042

ATGTCCCTTCTCTTCCATTTCCTTCCCTTCCTTTTCCTTCTCCTCACTTTCCCCTCCATTTCCTTCTCCGCCACAACATGCCCCCTCAACATAACCATCCTCCGCCACATCGGCGACGGTTCAACACCATCCATCTCCTCCGGCACACAGTGCCACAACGTCCTCCAAGCTCTCCACCTCGTCCAAGCTGACTACCTCCACCGCACCGGCTTCTTCGTCCCACCTCTCAACACCTCCGAAGCTTGTTGGTCATCTTTCCAATCCTTCATCGATGAATTTCAACCTAATTTCGATATTCGTTCCTCTTGCGGTTTTCAAACCTCGTGGATCTCACAAGGTTGCATGAACATCACAACCAAAGAACAATTCGAAAAACAGCTTTCTAAACCTGCACTTCAAGCTCTTCAATCGAATTGTAACGTTTCTTTTGAGAGAAACGATGCTTGTGCTCTCTGCACACCTAAACGCTCTGAAGCGCTTACTTATTTGACCGGAGTAACCGTCAGTAACGTCTCCGATTGTAGTTCTTACACCGCTATTTACGCCGCTTCACTTTCCGATGAGTTTGGTCCTACTAACATAGGAACTGCTAGTTGTTTGTTTGGTCTTGATTTTTCTTCTTCGTCGAAATCCAGTAACAAGAATCGAAAACTTGTTATTGCGCTTGTTACAGTTTTTACTTTTTTAGGATTGTTGTTTTTTGTTGGATTTTGGATTTTTGTTAAACGGAGAAAGAGTATGAAAGAAAAGGGGAATTATAATAGGACTGAGATTGTGATAGGTTTAGGTTCGGGTTTGGATAAGATGAATCAGAGTACTACTTTGATTAGGTTTAATTTTGATGAGATTAAGAAAGCAACTAGGAATTTTTCTAGGGATAATATAATTGGGAGTGGTGGTTATGGAAATGTTTATAAAGGTTTGTTGAATGATGGAACTGAAGTTGCATTGAAAAGGTTTAAGAATTGTTCTGTTGCCGGTGATGCTAGTTTTACTCATGAAGTTGAAGTTATTGCTAGTGTTAGGCATGTTAATCTTGTTGCTTTAAGAGGTTATTGTACTGCTACTACTAATTTAGAAGGTCATCAGAGGATTATTGTTACCGATTTAATGGAGAATGGGAGTCTTTATGATCATTTATTTGGTTCTTCGAAGAAGAAGTTGAGTTGGCCGGTTCGTCAGAAGATTGCTCTTGGCACGGCTAGGGGTTTAGCTTATTTGCATTATGGGGCTCAGCCTTCGATTATTCATAGGGATATTAAAGCTAGTAATATACTTTTGGATGAGAAGTTTGAGGCTAAGGTAGCAGATTTTGGGTTGGCGAAGTTCAATCCGGAGGGGATGACTCATATGAGTACTAGGGTGGCGGGAACTATGGGGTATGTTGCTCCTGAGTATGCATTGTATGGACAGTTGACAGAGAGGAGTGATGTGTTTAGTTTTGGTGTTTTGCTTCTCGAGCTTTTGAGTGGAAGAAAGGCGCTTGAAACAAATGAGGATGGCCAACCCACTGCATTCAGTGACTTGGCTTGGTCGTTGGTTAGAAATAATAGGGCTTTGGATGTTATTGAAGATGGCATGCCAGAACCTGGTACACCAGAAATTCTTGAGAAGTATGTGTTGGTTGCTGTTTTATGTTCACATCCACAGTTATATGCGAGGCCAACGATGGATCAGGTCGTTAAAATGCTGGAGACAGATGATGAAGCAGTGCCATCAGTAGTGGAAAGGCCAATCCCTTTTATTGCTGGGAGACTTGATATCGAGAAATCTGCTAGCAATAACTCGGGTCAGCTCTGCAGTCCAACTGGTTATCAAGCATATACAATGCAATCCCAAAGTCGGCGTGCTTCTACTTGTAATGAAGAGGAAGAAAACTCGGAACGTGCTTCTAATTGTAAGGAAGAGGAAGGAAACTCGAAACGTGCTTCTAGTTGTAAGGAAGAGGAAGGTAGCTCAGAACGCAGGTCTGTAAGTAAAGATTGA

Protein sequence

>MS.gene018042.t1

MSLLFHFLPFLFLLLTFPSISFSATTCPLNITILRHIGDGSTPSISSGTQCHNVLQALHLVQADYLHRTGFFVPPLNTSEACWSSFQSFIDEFQPNFDIRSSCGFQTSWISQGCMNITTKEQFEKQLSKPALQALQSNCNVSFERNDACALCTPKRSEALTYLTGVTVSNVSDCSSYTAIYAASLSDEFGPTNIGTASCLFGLDFSSSSKSSNKNRKLVIALVTVFTFLGLLFFVGFWIFVKRRKSMKEKGNYNRTEIVIGLGSGLDKMNQSTTLIRFNFDEIKKATRNFSRDNIIGSGGYGNVYKGLLNDGTEVALKRFKNCSVAGDASFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKKLSWPVRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVLLLELLSGRKALETNEDGQPTAFSDLAWSLVRNNRALDVIEDGMPEPGTPEILEKYVLVAVLCSHPQLYARPTMDQVVKMLETDDEAVPSVVERPIPFIAGRLDIEKSASNNSGQLCSPTGYQAYTMQSQSRRASTCNEEEENSERASNCKEEEGNSKRASSCKEEEGSSERRSVSKD