AlfalfaGEDB | MS.gene018865

M. sativa cultivar XinJiangDaYe / MS.gene018865

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF00248.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018865.t1	XP_013441999.1	97.5	316	8	0	1	316	1	316	2.60E-176	627.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018865.t1	P26690	61.3	315	118	4	2	315	3	314	1.9e-106	387.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018865.t1	A0A072TEP5	97.5	316	8	0	1	316	1	316	1.9e-176	627.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene003638	MS.gene018865	PPI
MS.gene018865	MS.gene93058	PPI
MS.gene018865	MS.gene55382	PPI
MS.gene018865	MS.gene93783	PPI
MS.gene018865	MS.gene056487	PPI
MS.gene018865	MS.gene99693	PPI
MS.gene018865	MS.gene42146	PPI
MS.gene018865	MS.gene42873	PPI
MS.gene018865	MS.gene87111	PPI
MS.gene018865	MS.gene97980	PPI

Showing 1 to 10 of 27 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018865.t1	MTR_0374s0050	97.468	316	8	0	1	316	1	316	0.0	638
MS.gene018865.t1	MTR_3g083130	62.058	311	115	3	6	315	7	315	4.75e-140	398
MS.gene018865.t1	MTR_5g097900	62.295	305	112	3	1	305	1	302	5.91e-128	368
MS.gene018865.t1	MTR_5g097910	62.295	305	112	3	1	305	1	302	7.68e-128	367
MS.gene018865.t1	MTR_5g097940	62.295	305	112	3	1	305	1	302	7.68e-128	367
MS.gene018865.t1	MTR_4g072320	52.160	324	138	3	1	316	1	315	3.83e-115	335
MS.gene018865.t1	MTR_4g072350	51.393	323	146	2	1	315	1	320	1.03e-114	334
MS.gene018865.t1	MTR_6g073110	51.713	321	144	2	1	313	1	318	1.01e-112	329
MS.gene018865.t1	MTR_4g072360	49.691	324	152	2	1	316	1	321	1.57e-110	324
MS.gene018865.t1	MTR_4g036845	42.484	306	161	6	20	315	14	314	3.67e-84	256

Showing 1 to 10 of 29 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018865.t1	AT1G59960	50.462	325	151	3	1	315	1	325	2.32e-121	352
MS.gene018865.t1	AT1G59950	54.426	305	130	2	20	315	15	319	3.61e-115	335
MS.gene018865.t1	AT5G62420	44.625	307	156	5	19	315	13	315	4.29e-85	259
MS.gene018865.t1	AT2G37790	41.176	306	166	4	18	315	14	313	1.91e-78	242
MS.gene018865.t1	AT2G37770	43.310	284	149	3	41	315	34	314	4.49e-78	241
MS.gene018865.t1	AT2G37760	40.984	305	161	4	20	315	16	310	6.86e-75	233
MS.gene018865.t1	AT2G37760	40.984	305	161	4	20	315	16	310	6.86e-75	233
MS.gene018865.t1	AT2G37760	42.199	282	153	3	18	299	14	285	1.07e-74	231
MS.gene018865.t1	AT2G37760	42.049	283	154	3	18	300	14	286	1.16e-74	231
MS.gene018865.t1	AT2G37760	42.049	283	154	3	18	300	14	286	1.16e-74	231

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Find 73 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGGAAATATTTGAT+TGG	0.411973	1.2:-37131076	MS.gene018865:CDS
AAAAGAATACTGTGAAGCAA+AGG	0.527118	1.2:-37131521	MS.gene018865:CDS
AAACAGATTCGTGTCAACAA+TGG	0.549643	1.2:-37131014	MS.gene018865:CDS
AAAGAATACTGTGAAGCAAA+GGG	0.552823	1.2:-37131520	MS.gene018865:CDS
AACAGATTCGTGTCAACAAT+GGG	0.479432	1.2:-37131013	MS.gene018865:CDS
AACATGCCAGTGATAGCATT+TGG	0.480266	1.2:-37133848	MS.gene018865:CDS
AACTTCATTACTACCCCAAC+TGG	0.445320	1.2:+37131456	None:intergenic
AAGATTTCAGCACAACTTGA+GGG	0.504815	1.2:+37133885	None:intergenic
AAGCAAATTGCAGAGGAACA+TGG	0.600046	1.2:-37131415	MS.gene018865:CDS
AATACTCAAGCAAATTGCAG+AGG	0.683311	1.2:-37131422	MS.gene018865:CDS

Showing 1 to 10 of 73 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAATACTGTGAAGCAA+AGG	-	chr1.2:37133352-37133371	MS.gene018865:intron	30.0%
AAAGAATACTGTGAAGCAAA+GGG	-	chr1.2:37133353-37133372	MS.gene018865:intron	30.0%
AAGTGATGAAGTATGAGAAA+TGG	+	chr1.2:37133274-37133293	None:intergenic	30.0%
ACATACCTTTAACATCACAA+AGG	+	chr1.2:37133710-37133729	None:intergenic	30.0%
ATAAATCACAGATCAAAGAG+AGG	-	chr1.2:37132534-37132553	MS.gene018865:intron	30.0%
ATAACCACATTTGATCTGAA+AGG	-	chr1.2:37132918-37132937	MS.gene018865:intron	30.0%
ATACACTTCATTCTTCAGTT+TGG	-	chr1.2:37132032-37132051	MS.gene018865:CDS	30.0%
CATGTTAAGCAACCTAAAAA+TGG	-	chr1.2:37131612-37131631	MS.gene018865:intron	30.0%
CGTATCCTAAAAAAGATTAC+GGG	+	chr1.2:37132225-37132244	None:intergenic	30.0%
GAAATTGTGATCTTTGTATC+TGG	+	chr1.2:37131901-37131920	None:intergenic	30.0%

Showing 1 to 10 of 163 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	37130971	37133924	37130971	ID=MS.gene018865
chr1.2	mRNA	37130971	37133924	37130971	ID=MS.gene018865.t1;Parent=MS.gene018865
chr1.2	exon	37133599	37133924	37133599	ID=MS.gene018865.t1.exon1;Parent=MS.gene018865.t1
chr1.2	CDS	37133599	37133924	37133599	ID=cds.MS.gene018865.t1;Parent=MS.gene018865.t1
chr1.2	exon	37131828	37132071	37131828	ID=MS.gene018865.t1.exon2;Parent=MS.gene018865.t1
chr1.2	CDS	37131828	37132071	37131828	ID=cds.MS.gene018865.t1;Parent=MS.gene018865.t1
chr1.2	exon	37131399	37131578	37131399	ID=MS.gene018865.t1.exon3;Parent=MS.gene018865.t1
chr1.2	CDS	37131399	37131578	37131399	ID=cds.MS.gene018865.t1;Parent=MS.gene018865.t1
chr1.2	exon	37130971	37131171	37130971	ID=MS.gene018865.t1.exon4;Parent=MS.gene018865.t1
chr1.2	CDS	37130971	37131171	37130971	ID=cds.MS.gene018865.t1;Parent=MS.gene018865.t1

Gene Sequence

>MS.gene018865

ATGTCTGCTTCAAAAATCCCTCAAGTTGTGCTGAAATCTTCATCCAACCAATGTAACATGCCAGTGATAGCATTTGGTACGGCAGCTGTAACAAACAACGATGGAGAAATCACAAAAGTAGCAGTAATTGAAGCGATCAAATCAGGTTACAGACACTTTGACACTGCATCAATATATGGCTCAGAAGAGGCTTTAGGAGAAGCTATAGAAGAAGCTCTTCAACTTGGTCTAATTGGATCAAGAGATGAACTCTTTATCACCTCCAAACTTTGGGTCACTAACAATTTTCCTCATCTTGTTCTTCCTGCTCTTCAGAAATCACTCCAGTAAGCAAAAGTCTTACCTCTTTCAATTTAGAACTATTAACTTGCTGAGATTTTTTTTTTGTACTTCAAATTTGCATCATAAAGTTGGTCTGTAATTTATTTACCATTCTAATCCAAAAATCATACAAATAATTTTTCTTCTTTGATTAATATAAAAAATAGTTCTTTAAATTCTTTTGTCTCCAAAAATATGGTTTTCATTTTTAGTTTTATTTTAAATTAAAATTGAGGAACGAGAATTATCATTATTCAAAGTGGCAGTAATAACTATTTTACGATTGTTTCTAGGGTCATGTTAACTTGTGCCCTAAGACACATGTTAAGCAACCTAAAAATGGTAACTTTGCATTGGAAAACATAATATATTAACTTTTAAGAAGTTGAATGCACAACTTTTTATGCGTATATTTCTTTAATAAGTTCCTTAACATGTGCCCTTGAGGGCACAAGTTAACATTTGCCTTGTTTCTATGAGTTTTGAACTCCATCCTTTAAAGTTATAGGGTAGCACTTGGGTGACATTAGTTATAAGGGTAGTTTTTTTTTTTAGAGAATTATAAGGGTAGTTATAAGGTTAAACTTACACATCAATCTATGAAACCCAGATACAAAGATCACAATTTCAAAAAATAATAGTTGTGATCAAAATAAAATAGAAAATGTATAGTTACCACTTCAAAAAATAATAGTTGTGATCAAAATAAAATAGAAAATGTATAGTTACCATAGGAAATAATACACTTCATTCTTCAGTTTGGACATCAACAAAAACATCGTCAAAAGAACTCTACAATTTTTATTTAAAGTTGACAATTTGAGTCTCATCTCTTTCATTAGCTTCATCCACAAAAAACATAACTTTTAAGTATGGTTCAACGAGAGAGTTCAACTGATTGATATCTTAAAATGAATCATATACTTTTTACCCGTAATCTTTTTTAGGATACGTATATGGAAAGTATCTTATAAGTATCATTGTGTATATGTGGTGTATCCTATAAATATCTGATAAAAAATAATTTTTTAAAATTAAAAAAATTAATTCCGATACTTCGTGTGTATTTTGCAAGTATCTGCTATCCGCGAAGTATTGAAGTATCTTATAAGTAGCTACAAGTATCCACGGAGTATCAGTATATGATACGGATACGTCTCCAAGTTTGGAGTATCTAGCCTTCATATCATGGATGATTTTTATTTATCTTGACGCGCTACTTGAAAGCATAAATTGTTATATATAAATCACAGATCAAAGAGAGGGAGATGCATCTCATAGGAAAGTTATGTTTAAGAGCTTGATAGAGGAGAAAATCTTTAGAATTCATATTGATTGATTAAATATTGTAAATTAATACATGAGATGCTCTATGCATAGACCTACCAGAGAACCAACAAACAAATAATGATTGCAGTGATCATCTTCAATGATTGCTTTCAATTTTTAGTTTGAAACATTGTCATCAATATTAACTAAATAGCATCAAAACAACATGGAGCATAAGGTCTGAAATTGATGCCATATTGCAGGACCATGAAATTAGAATATTTGGACCTTTATTTGATCCACTGGCCAATCAGTGTGAAGCCGGGAAATTGGGAATTGCCGTATGCTGAAGAATTAATAACCACATTTGATCTGAAAGGAGTGTGGACAGCAATGGAAGAATGCCAGAAATTAGGCCTTGCAAAATCTATAGGAGTCAGTAACTTCACTCGCAAGAAACTTGAAGATCTACTCTCATTTGCTATCATTCCTCCTTCGGTCAATCAAGTAAGCCAATAAGCTCATCTATGTCACTTTCTACCTTTCTCTTTCACTAGTCTTGTAGTTTAATGTCGGTCTAAAATAGTTTTACAGGGGCAGCAATTGAGAAGTTGCGATATTTCCATGTAATATCACTTTGTAATTGTAATTTAAAGATAACTGCAAAAATGCTGAATTCTAATTGGACGTCGGTGTAAAAGCATATATCTCCATTTCTCATACTTCATCACTTGATATTAATGCCACCAAATATAGGTGGAGATGAATCCAGTTTGGCATCAGAAGAAGCTAAAAGAATACTGTGAAGCAAAGGGTATAATCATAACTGCTTTCTCTCCTTTAGGAGCGAAAGGGGCCAGTTGGGGTAGTAATGAAGTTATGGACAGTGAAATACTCAAGCAAATTGCAGAGGAACATGGCAAAAATATTGCTCAGGTTACCATTTTGAGTTTCTATCAGTTAGTTGAATTCAACTTTTCATCTTAAATCTCCAATTGAGTATTTCATGCACAAGAAAATAATAAGTTAATATTTATATGTTGATATTCTTAACATCATCATTGTTGCAAACTTGCAATAATTATTTTATTCAAGTTTATTAGCTAGGGTTTCTATTATTCAACTGTTTGATGAAGTTAATATAATCCTTTGTGATGTTAAAGGTATGTCTTAGATGGTTGTATGAGCAAGGGGTGACTATGGCTGTGAAGAGCTACAACAAGCAGAGAATGAAGCAAAACTTGGAAATATTTGATTGGTCACTTGCAAAAGATGATCATGAAAAGATTGATCAAATCAAACAGATTCGTGTCAACAATGGGCCAGTTGTGTTCATTCCTAATCTTTGGGATGGGGAAACTTAA

Protein sequence

>MS.gene018865.t1

MSASKIPQVVLKSSSNQCNMPVIAFGTAAVTNNDGEITKVAVIEAIKSGYRHFDTASIYGSEEALGEAIEEALQLGLIGSRDELFITSKLWVTNNFPHLVLPALQKSLQTMKLEYLDLYLIHWPISVKPGNWELPYAEELITTFDLKGVWTAMEECQKLGLAKSIGVSNFTRKKLEDLLSFAIIPPSVNQVEMNPVWHQKKLKEYCEAKGIIITAFSPLGAKGASWGSNEVMDSEILKQIAEEHGKNIAQVCLRWLYEQGVTMAVKSYNKQRMKQNLEIFDWSLAKDDHEKIDQIKQIRVNNGPVVFIPNLWDGET