Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018865.t1 | XP_013441999.1 | 97.5 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 2.60E-176 | 627.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018865.t1 | P26690 | 61.3 | 315 | 118 | 4 | 2 | 315 | 3 | 314 | 1.9e-106 | 387.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018865.t1 | A0A072TEP5 | 97.5 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 1.9e-176 | 627.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018865 | MS.gene93058 | PPI |
| MS.gene003638 | MS.gene018865 | PPI |
| MS.gene018865 | MS.gene55382 | PPI |
| MS.gene018865 | MS.gene93783 | PPI |
| MS.gene018865 | MS.gene056487 | PPI |
| MS.gene62620 | MS.gene018865 | PPI |
| MS.gene018865 | MS.gene99693 | PPI |
| MS.gene056488 | MS.gene018865 | PPI |
| MS.gene018865 | MS.gene42146 | PPI |
| MS.gene97981 | MS.gene018865 | PPI |
| MS.gene018865 | MS.gene42873 | PPI |
| MS.gene54933 | MS.gene018865 | PPI |
| MS.gene018865 | MS.gene87111 | PPI |
| MS.gene93059 | MS.gene018865 | PPI |
| MS.gene018865 | MS.gene97980 | PPI |
| MS.gene72560 | MS.gene018865 | PPI |
| MS.gene018865 | MS.gene062932 | PPI |
| MS.gene040151 | MS.gene018865 | PPI |
| MS.gene018865 | MS.gene008793 | PPI |
| MS.gene018865 | MS.gene024362 | PPI |
| MS.gene018865 | MS.gene91446 | PPI |
| MS.gene018865 | MS.gene008794 | PPI |
| MS.gene018865 | MS.gene95889 | PPI |
| MS.gene50700 | MS.gene018865 | PPI |
| MS.gene018865 | MS.gene98697 | PPI |
| MS.gene23359 | MS.gene018865 | PPI |
| MS.gene018865 | MS.gene53169 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018865.t1 | MTR_0374s0050 | 97.468 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 0.0 | 638 |
| MS.gene018865.t1 | MTR_3g083130 | 62.058 | 311 | 115 | 3 | 6 | 315 | 7 | 315 | 4.75e-140 | 398 |
| MS.gene018865.t1 | MTR_5g097900 | 62.295 | 305 | 112 | 3 | 1 | 305 | 1 | 302 | 5.91e-128 | 368 |
| MS.gene018865.t1 | MTR_5g097910 | 62.295 | 305 | 112 | 3 | 1 | 305 | 1 | 302 | 7.68e-128 | 367 |
| MS.gene018865.t1 | MTR_5g097940 | 62.295 | 305 | 112 | 3 | 1 | 305 | 1 | 302 | 7.68e-128 | 367 |
| MS.gene018865.t1 | MTR_4g072320 | 52.160 | 324 | 138 | 3 | 1 | 316 | 1 | 315 | 3.83e-115 | 335 |
| MS.gene018865.t1 | MTR_4g072350 | 51.393 | 323 | 146 | 2 | 1 | 315 | 1 | 320 | 1.03e-114 | 334 |
| MS.gene018865.t1 | MTR_6g073110 | 51.713 | 321 | 144 | 2 | 1 | 313 | 1 | 318 | 1.01e-112 | 329 |
| MS.gene018865.t1 | MTR_4g072360 | 49.691 | 324 | 152 | 2 | 1 | 316 | 1 | 321 | 1.57e-110 | 324 |
| MS.gene018865.t1 | MTR_4g036845 | 42.484 | 306 | 161 | 6 | 20 | 315 | 14 | 314 | 3.67e-84 | 256 |
| MS.gene018865.t1 | MTR_8g070095 | 40.000 | 310 | 169 | 6 | 18 | 315 | 14 | 318 | 1.74e-75 | 234 |
| MS.gene018865.t1 | MTR_7g063580 | 42.960 | 277 | 141 | 5 | 50 | 315 | 83 | 353 | 2.05e-71 | 225 |
| MS.gene018865.t1 | MTR_8g070115 | 38.170 | 317 | 181 | 4 | 8 | 315 | 4 | 314 | 2.47e-71 | 223 |
| MS.gene018865.t1 | MTR_4g021350 | 41.368 | 307 | 163 | 7 | 18 | 315 | 14 | 312 | 1.51e-66 | 211 |
| MS.gene018865.t1 | MTR_4g021350 | 41.993 | 281 | 155 | 5 | 18 | 298 | 14 | 286 | 2.29e-65 | 207 |
| MS.gene018865.t1 | MTR_7g070500 | 38.312 | 308 | 170 | 6 | 19 | 315 | 22 | 320 | 3.98e-61 | 197 |
| MS.gene018865.t1 | MTR_7g070500 | 39.711 | 277 | 158 | 4 | 19 | 295 | 22 | 289 | 7.81e-60 | 194 |
| MS.gene018865.t1 | MTR_4g021410 | 41.445 | 263 | 140 | 4 | 41 | 303 | 35 | 283 | 2.16e-59 | 192 |
| MS.gene018865.t1 | MTR_4g021410 | 41.473 | 258 | 137 | 4 | 46 | 303 | 3 | 246 | 1.63e-58 | 189 |
| MS.gene018865.t1 | MTR_4g021450 | 39.437 | 284 | 149 | 5 | 41 | 315 | 35 | 304 | 8.07e-57 | 186 |
| MS.gene018865.t1 | MTR_4g072060 | 36.913 | 298 | 172 | 6 | 20 | 307 | 11 | 302 | 1.58e-55 | 182 |
| MS.gene018865.t1 | MTR_4g021410 | 41.818 | 220 | 115 | 3 | 84 | 303 | 1 | 207 | 9.78e-47 | 157 |
| MS.gene018865.t1 | MTR_4g021450 | 39.834 | 241 | 123 | 4 | 84 | 315 | 1 | 228 | 5.55e-45 | 153 |
| MS.gene018865.t1 | MTR_4g021450 | 39.130 | 184 | 99 | 3 | 141 | 315 | 6 | 185 | 5.12e-38 | 134 |
| MS.gene018865.t1 | MTR_6g072650 | 45.638 | 149 | 51 | 2 | 175 | 315 | 10 | 136 | 1.04e-36 | 129 |
| MS.gene018865.t1 | MTR_6g072710 | 51.402 | 107 | 52 | 0 | 193 | 299 | 1 | 107 | 1.08e-31 | 115 |
| MS.gene018865.t1 | MTR_3g449790 | 24.585 | 301 | 164 | 9 | 45 | 309 | 83 | 356 | 3.73e-16 | 78.6 |
| MS.gene018865.t1 | MTR_3g449790 | 24.585 | 301 | 170 | 10 | 45 | 309 | 83 | 362 | 3.03e-15 | 75.9 |
| MS.gene018865.t1 | MTR_3g092140 | 24.221 | 289 | 166 | 9 | 45 | 297 | 79 | 350 | 1.35e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018865.t1 | AT1G59960 | 50.462 | 325 | 151 | 3 | 1 | 315 | 1 | 325 | 2.32e-121 | 352 |
| MS.gene018865.t1 | AT1G59950 | 54.426 | 305 | 130 | 2 | 20 | 315 | 15 | 319 | 3.61e-115 | 335 |
| MS.gene018865.t1 | AT5G62420 | 44.625 | 307 | 156 | 5 | 19 | 315 | 13 | 315 | 4.29e-85 | 259 |
| MS.gene018865.t1 | AT2G37790 | 41.176 | 306 | 166 | 4 | 18 | 315 | 14 | 313 | 1.91e-78 | 242 |
| MS.gene018865.t1 | AT2G37770 | 43.310 | 284 | 149 | 3 | 41 | 315 | 34 | 314 | 4.49e-78 | 241 |
| MS.gene018865.t1 | AT2G37760 | 40.984 | 305 | 161 | 4 | 20 | 315 | 16 | 310 | 6.86e-75 | 233 |
| MS.gene018865.t1 | AT2G37760 | 40.984 | 305 | 161 | 4 | 20 | 315 | 16 | 310 | 6.86e-75 | 233 |
| MS.gene018865.t1 | AT2G37760 | 42.199 | 282 | 153 | 3 | 18 | 299 | 14 | 285 | 1.07e-74 | 231 |
| MS.gene018865.t1 | AT2G37760 | 42.049 | 283 | 154 | 3 | 18 | 300 | 14 | 286 | 1.16e-74 | 231 |
| MS.gene018865.t1 | AT2G37760 | 42.049 | 283 | 154 | 3 | 18 | 300 | 14 | 286 | 1.16e-74 | 231 |
| MS.gene018865.t1 | AT3G53880 | 41.007 | 278 | 152 | 3 | 47 | 315 | 40 | 314 | 5.33e-73 | 228 |
| MS.gene018865.t1 | AT3G53880 | 42.063 | 252 | 143 | 2 | 47 | 298 | 40 | 288 | 2.99e-70 | 221 |
| MS.gene018865.t1 | AT5G01670 | 37.459 | 307 | 172 | 6 | 20 | 315 | 24 | 321 | 1.25e-68 | 217 |
| MS.gene018865.t1 | AT5G01670 | 34.431 | 334 | 172 | 7 | 20 | 315 | 24 | 348 | 1.09e-62 | 202 |
| MS.gene018865.t1 | AT2G37760 | 40.769 | 260 | 142 | 3 | 65 | 315 | 8 | 264 | 7.52e-62 | 197 |
| MS.gene018865.t1 | AT2G37760 | 40.769 | 260 | 142 | 3 | 65 | 315 | 8 | 264 | 7.52e-62 | 197 |
| MS.gene018865.t1 | AT2G21250 | 34.564 | 298 | 179 | 6 | 20 | 307 | 11 | 302 | 2.32e-59 | 192 |
| MS.gene018865.t1 | AT2G21260 | 35.417 | 288 | 170 | 7 | 20 | 297 | 11 | 292 | 1.73e-58 | 190 |
| MS.gene018865.t1 | AT2G37770 | 45.977 | 174 | 91 | 2 | 41 | 214 | 34 | 204 | 8.40e-49 | 164 |
| MS.gene018865.t1 | AT2G21250 | 35.371 | 229 | 132 | 6 | 20 | 238 | 11 | 233 | 5.24e-43 | 148 |
| MS.gene018865.t1 | AT2G21260 | 32.420 | 219 | 136 | 5 | 89 | 297 | 8 | 224 | 1.64e-39 | 139 |
| MS.gene018865.t1 | AT1G06690 | 28.247 | 308 | 164 | 11 | 38 | 309 | 87 | 373 | 1.26e-22 | 97.4 |
| MS.gene018865.t1 | AT5G53580 | 23.875 | 289 | 159 | 12 | 45 | 293 | 80 | 347 | 2.37e-12 | 67.4 |
Find 73 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCATGAAATTAGAATATT+TGG | 0.170879 | 1.2:-37132049 | MS.gene018865:CDS |
| GCTCTTCAACTTGGTCTAAT+TGG | 0.184953 | 1.2:-37133689 | MS.gene018865:CDS |
| TTGTGTTCATTCCTAATCTT+TGG | 0.231133 | 1.2:-37130986 | MS.gene018865:CDS |
| TCAGTGTGAAGCCGGGAAAT+TGG | 0.256916 | 1.2:-37132002 | MS.gene018865:CDS |
| ATTGTTAGTGACCCAAAGTT+TGG | 0.316108 | 1.2:+37133640 | None:intergenic |
| TTTGACACTGCATCAATATA+TGG | 0.316665 | 1.2:-37133746 | MS.gene018865:CDS |
| ATAACTGCTTTCTCTCCTTT+AGG | 0.323072 | 1.2:-37131490 | MS.gene018865:CDS |
| ATGGAAGAATGCCAGAAATT+AGG | 0.335714 | 1.2:-37131919 | MS.gene018865:CDS |
| GTCCAAATATTCTAATTTCA+TGG | 0.352675 | 1.2:+37132047 | None:intergenic |
| GTTTCCCCATCCCAAAGATT+AGG | 0.362212 | 1.2:+37130975 | None:intergenic |
| TGTGTTCATTCCTAATCTTT+GGG | 0.362959 | 1.2:-37130985 | MS.gene018865:CDS |
| CTTTATCACCTCCAAACTTT+GGG | 0.366153 | 1.2:-37133651 | MS.gene018865:CDS |
| CAGTGTGAAGCCGGGAAATT+GGG | 0.376439 | 1.2:-37132001 | MS.gene018865:CDS |
| AGCTTCTTCTGATGCCAAAC+TGG | 0.376503 | 1.2:+37131544 | None:intergenic |
| GTAATTGAAGCGATCAAATC+AGG | 0.386781 | 1.2:-37133779 | MS.gene018865:CDS |
| AGGAGCGAAAGGGGCCAGTT+GGG | 0.392715 | 1.2:-37131470 | MS.gene018865:CDS |
| TCTTTATCACCTCCAAACTT+TGG | 0.397007 | 1.2:-37133652 | MS.gene018865:CDS |
| ATTTGCTATCATTCCTCCTT+CGG | 0.405885 | 1.2:-37131836 | MS.gene018865:CDS |
| TACGGCAATTCCCAATTTCC+CGG | 0.409708 | 1.2:+37131991 | None:intergenic |
| TATGGCTCAGAAGAGGCTTT+AGG | 0.410339 | 1.2:-37133728 | MS.gene018865:CDS |
| AAAACTTGGAAATATTTGAT+TGG | 0.411973 | 1.2:-37131076 | MS.gene018865:CDS |
| CACTGGCATGTTACATTGGT+TGG | 0.417583 | 1.2:+37133859 | None:intergenic |
| TTAGGCCTTGCAAAATCTAT+AGG | 0.418202 | 1.2:-37131901 | MS.gene018865:CDS |
| TTCATTCCTAATCTTTGGGA+TGG | 0.425282 | 1.2:-37130981 | MS.gene018865:CDS |
| TGGACCTTTATTTGATCCAC+TGG | 0.428214 | 1.2:-37132029 | MS.gene018865:CDS |
| AACTTCATTACTACCCCAAC+TGG | 0.445320 | 1.2:+37131456 | None:intergenic |
| TTCTCTCCTTTAGGAGCGAA+AGG | 0.447152 | 1.2:-37131481 | MS.gene018865:CDS |
| TTTCCCGGCTTCACACTGAT+TGG | 0.447551 | 1.2:+37132006 | None:intergenic |
| GTATGAGCAAGGGGTGACTA+TGG | 0.448857 | 1.2:-37131132 | MS.gene018865:CDS |
| GTTATTAATTCTTCAGCATA+CGG | 0.462926 | 1.2:+37131973 | None:intergenic |
| CTGGCCAATCAGTGTGAAGC+CGG | 0.465201 | 1.2:-37132010 | MS.gene018865:CDS |
| TTGGGGTAGTAATGAAGTTA+TGG | 0.468928 | 1.2:-37131452 | MS.gene018865:CDS |
| GCAGAGAATGAAGCAAAACT+TGG | 0.473968 | 1.2:-37131090 | MS.gene018865:CDS |
| AACAGATTCGTGTCAACAAT+GGG | 0.479432 | 1.2:-37131013 | MS.gene018865:CDS |
| AACATGCCAGTGATAGCATT+TGG | 0.480266 | 1.2:-37133848 | MS.gene018865:CDS |
| TGGAGTGATTTCTGAAGAGC+AGG | 0.480636 | 1.2:+37133599 | None:intergenic |
| AGATTAGGAATGAACACAAC+TGG | 0.481723 | 1.2:+37130990 | None:intergenic |
| CATTCCTAATCTTTGGGATG+GGG | 0.488604 | 1.2:-37130979 | MS.gene018865:CDS |
| TCTCTCCTTTAGGAGCGAAA+GGG | 0.492538 | 1.2:-37131480 | MS.gene018865:CDS |
| TCATTCCTAATCTTTGGGAT+GGG | 0.495349 | 1.2:-37130980 | MS.gene018865:CDS |
| AAGATTTCAGCACAACTTGA+GGG | 0.504815 | 1.2:+37133885 | None:intergenic |
| TAGGAGCGAAAGGGGCCAGT+TGG | 0.506852 | 1.2:-37131471 | MS.gene018865:CDS |
| TGTTAAAGGTATGTCTTAGA+TGG | 0.508011 | 1.2:-37131157 | MS.gene018865:intron |
| AGGTGGAGATGAATCCAGTT+TGG | 0.508462 | 1.2:-37131558 | MS.gene018865:CDS |
| TTGGCCAGTGGATCAAATAA+AGG | 0.518534 | 1.2:+37132025 | None:intergenic |
| CTTACTTGATTGACCGAAGG+AGG | 0.519682 | 1.2:+37131823 | None:intergenic |
| CTGGCCCCTTTCGCTCCTAA+AGG | 0.523489 | 1.2:+37131475 | None:intergenic |
| AAAAGAATACTGTGAAGCAA+AGG | 0.527118 | 1.2:-37131521 | MS.gene018865:CDS |
| GAAGATTTCAGCACAACTTG+AGG | 0.530579 | 1.2:+37133884 | None:intergenic |
| GTTAGTGACCCAAAGTTTGG+AGG | 0.534520 | 1.2:+37133643 | None:intergenic |
| GGAGCGAAAGGGGCCAGTTG+GGG | 0.542781 | 1.2:-37131469 | MS.gene018865:CDS |
| AAACAGATTCGTGTCAACAA+TGG | 0.549643 | 1.2:-37131014 | MS.gene018865:CDS |
| AAAGAATACTGTGAAGCAAA+GGG | 0.552823 | 1.2:-37131520 | MS.gene018865:CDS |
| GCCGTACCAAATGCTATCAC+TGG | 0.552904 | 1.2:+37133842 | None:intergenic |
| CTTAGATGGTTGTATGAGCA+AGG | 0.553980 | 1.2:-37131143 | MS.gene018865:CDS |
| TGGCCAATCAGTGTGAAGCC+GGG | 0.555485 | 1.2:-37132009 | MS.gene018865:CDS |
| ATAGAAGAAGCTCTTCAACT+TGG | 0.557954 | 1.2:-37133698 | MS.gene018865:CDS |
| ATAACCACATTTGATCTGAA+AGG | 0.559708 | 1.2:-37131955 | MS.gene018865:CDS |
| CTATCACTGGCATGTTACAT+TGG | 0.572838 | 1.2:+37133855 | None:intergenic |
| CACTCCTTTCAGATCAAATG+TGG | 0.582449 | 1.2:+37131951 | None:intergenic |
| GAAAGGAGTGTGGACAGCAA+TGG | 0.582486 | 1.2:-37131938 | MS.gene018865:CDS |
| CTCTCCTTTAGGAGCGAAAG+GGG | 0.586415 | 1.2:-37131479 | MS.gene018865:CDS |
| GCCAGTGATAGCATTTGGTA+CGG | 0.589659 | 1.2:-37133843 | MS.gene018865:CDS |
| TGGCTTACTTGATTGACCGA+AGG | 0.592154 | 1.2:+37131820 | None:intergenic |
| AAGCAAATTGCAGAGGAACA+TGG | 0.600046 | 1.2:-37131415 | MS.gene018865:CDS |
| ATCAATATATGGCTCAGAAG+AGG | 0.615079 | 1.2:-37133735 | MS.gene018865:CDS |
| AGAGCAGGAAGAACAAGATG+AGG | 0.626023 | 1.2:+37133614 | None:intergenic |
| TAGATGGTTGTATGAGCAAG+GGG | 0.628862 | 1.2:-37131141 | MS.gene018865:CDS |
| TTAGATGGTTGTATGAGCAA+GGG | 0.638177 | 1.2:-37131142 | MS.gene018865:CDS |
| GCTTCACACTGATTGGCCAG+TGG | 0.662823 | 1.2:+37132013 | None:intergenic |
| CATTTGATCTGAAAGGAGTG+TGG | 0.668530 | 1.2:-37131948 | MS.gene018865:CDS |
| AATACTCAAGCAAATTGCAG+AGG | 0.683311 | 1.2:-37131422 | MS.gene018865:CDS |
| GCAGCTGTAACAAACAACGA+TGG | 0.714604 | 1.2:-37133821 | MS.gene018865:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTATTTGTATGATTTT+TGG | + | chr1.2:37131413-37131432 | None:intergenic | 10.0% |
| !!! | ATTTTTTATCAGATATTTAT+AGG | + | chr1.2:37132294-37132313 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAGAGAATTATAA+GGG | - | chr1.2:37131837-37131856 | MS.gene018865:CDS | 10.0% |
| !!! | TTTTTTTTTAGAGAATTATA+AGG | - | chr1.2:37131836-37131855 | MS.gene018865:CDS | 10.0% |
| !!! | AAAAACATAACTTTTAAGTA+TGG | - | chr1.2:37132145-37132164 | MS.gene018865:intron | 15.0% |
| !!! | AAAAATGAAAACCATATTTT+TGG | + | chr1.2:37131482-37131501 | None:intergenic | 15.0% |
| !! | AAAACTTGGAAATATTTGAT+TGG | - | chr1.2:37133797-37133816 | MS.gene018865:CDS | 20.0% |
| !! | AATTACAAAGTGATATTACA+TGG | + | chr1.2:37133186-37133205 | None:intergenic | 20.0% |
| !! | AGAATTATCATTATTCAAAG+TGG | - | chr1.2:37131532-37131551 | MS.gene018865:CDS | 20.0% |
| !!! | ACAACTATTATTTTTTGAAG+TGG | + | chr1.2:37131970-37131989 | None:intergenic | 20.0% |
| !!! | CTTAAAAGTTATGTTTTTTG+TGG | + | chr1.2:37132143-37132162 | None:intergenic | 20.0% |
| !!! | TAATAGTTCTAAATTGAAAG+AGG | + | chr1.2:37131316-37131335 | None:intergenic | 20.0% |
| !!! | TTATTCAAGTTTATTAGCTA+GGG | - | chr1.2:37133647-37133666 | MS.gene018865:CDS | 20.0% |
| !!! | TTTATTCAAGTTTATTAGCT+AGG | - | chr1.2:37133646-37133665 | MS.gene018865:CDS | 20.0% |
| ! | AAAAATCATCCATGATATGA+AGG | + | chr1.2:37132473-37132492 | None:intergenic | 25.0% |
| ! | AAATTGTGATCTTTGTATCT+GGG | + | chr1.2:37131900-37131919 | None:intergenic | 25.0% |
| ! | ACGTATCCTAAAAAAGATTA+CGG | + | chr1.2:37132226-37132245 | None:intergenic | 25.0% |
| ! | AGAAAATGTATAGTTACCAT+AGG | - | chr1.2:37132004-37132023 | MS.gene018865:CDS | 25.0% |
| ! | ATAATCCTTTGTGATGTTAA+AGG | - | chr1.2:37133702-37133721 | MS.gene018865:CDS | 25.0% |
| ! | ATATTAATGCCACCAAATAT+AGG | - | chr1.2:37133295-37133314 | MS.gene018865:intron | 25.0% |
| ! | ATGAAGTGTATTATTTCCTA+TGG | + | chr1.2:37132023-37132042 | None:intergenic | 25.0% |
| ! | CAAAAATGCTGAATTCTAAT+TGG | - | chr1.2:37133224-37133243 | MS.gene018865:intron | 25.0% |
| ! | GAATTATAAGGGTAGTTATA+AGG | - | chr1.2:37131848-37131867 | MS.gene018865:CDS | 25.0% |
| ! | GACCATGAAATTAGAATATT+TGG | - | chr1.2:37132824-37132843 | MS.gene018865:intron | 25.0% |
| ! | GTCCAAATATTCTAATTTCA+TGG | + | chr1.2:37132829-37132848 | None:intergenic | 25.0% |
| ! | GTTATTAATTCTTCAGCATA+CGG | + | chr1.2:37132903-37132922 | None:intergenic | 25.0% |
| ! | TAAAAATGGTAACTTTGCAT+TGG | - | chr1.2:37131626-37131645 | MS.gene018865:intron | 25.0% |
| ! | TAAATAGCATCAAAACAACA+TGG | - | chr1.2:37132768-37132787 | MS.gene018865:intron | 25.0% |
| ! | TAACTGATAGAAACTCAAAA+TGG | + | chr1.2:37133504-37133523 | None:intergenic | 25.0% |
| ! | TAAGTATCATTGTGTATATG+TGG | - | chr1.2:37132263-37132282 | MS.gene018865:intron | 25.0% |
| ! | TCAAATTTGCATCATAAAGT+TGG | - | chr1.2:37131362-37131381 | MS.gene018865:intron | 25.0% |
| ! | TGCAATCATTATTTGTTTGT+TGG | + | chr1.2:37132688-37132707 | None:intergenic | 25.0% |
| !! | TTCTTTTGTCTCCAAAAATA+TGG | - | chr1.2:37131468-37131487 | MS.gene018865:CDS | 25.0% |
| !! | TTTTACCCGTAATCTTTTTT+AGG | - | chr1.2:37132217-37132236 | MS.gene018865:intron | 25.0% |
| !!! | AATGCAAAGTTACCATTTTT+AGG | + | chr1.2:37131627-37131646 | None:intergenic | 25.0% |
| !!! | ACTATTTTACGATTGTTTCT+AGG | - | chr1.2:37131563-37131582 | MS.gene018865:intron | 25.0% |
| !!! | CTATTTTACGATTGTTTCTA+GGG | - | chr1.2:37131564-37131583 | MS.gene018865:intron | 25.0% |
| !!! | GTATGATTTTTGGATTAGAA+TGG | + | chr1.2:37131403-37131422 | None:intergenic | 25.0% |
| !!! | TCTTTTTTAGGATACGTATA+TGG | - | chr1.2:37132229-37132248 | MS.gene018865:intron | 25.0% |
| AAAAGAATACTGTGAAGCAA+AGG | - | chr1.2:37133352-37133371 | MS.gene018865:intron | 30.0% | |
| AAAGAATACTGTGAAGCAAA+GGG | - | chr1.2:37133353-37133372 | MS.gene018865:intron | 30.0% | |
| AAGTGATGAAGTATGAGAAA+TGG | + | chr1.2:37133274-37133293 | None:intergenic | 30.0% | |
| ACATACCTTTAACATCACAA+AGG | + | chr1.2:37133710-37133729 | None:intergenic | 30.0% | |
| ATAAATCACAGATCAAAGAG+AGG | - | chr1.2:37132534-37132553 | MS.gene018865:intron | 30.0% | |
| ATAACCACATTTGATCTGAA+AGG | - | chr1.2:37132918-37132937 | MS.gene018865:intron | 30.0% | |
| ATACACTTCATTCTTCAGTT+TGG | - | chr1.2:37132032-37132051 | MS.gene018865:CDS | 30.0% | |
| CATGTTAAGCAACCTAAAAA+TGG | - | chr1.2:37131612-37131631 | MS.gene018865:intron | 30.0% | |
| CGTATCCTAAAAAAGATTAC+GGG | + | chr1.2:37132225-37132244 | None:intergenic | 30.0% | |
| GAAATTGTGATCTTTGTATC+TGG | + | chr1.2:37131901-37131920 | None:intergenic | 30.0% | |
| GTTCAAAACTCATAGAAACA+AGG | + | chr1.2:37131760-37131779 | None:intergenic | 30.0% | |
| TAAATCACAGATCAAAGAGA+GGG | - | chr1.2:37132535-37132554 | MS.gene018865:intron | 30.0% | |
| TAAGATACTTCAATACTTCG+CGG | + | chr1.2:37132380-37132399 | None:intergenic | 30.0% | |
| TATGTTTAAGAGCTTGATAG+AGG | - | chr1.2:37132579-37132598 | MS.gene018865:intron | 30.0% | |
| TGTGTTCATTCCTAATCTTT+GGG | - | chr1.2:37133888-37133907 | MS.gene018865:CDS | 30.0% | |
| TTGGGTGACATTAGTTATAA+GGG | - | chr1.2:37131808-37131827 | MS.gene018865:intron | 30.0% | |
| TTGTGCATGAAATACTCAAT+TGG | + | chr1.2:37133555-37133574 | None:intergenic | 30.0% | |
| TTGTGTTCATTCCTAATCTT+TGG | - | chr1.2:37133887-37133906 | MS.gene018865:CDS | 30.0% | |
| TTTGACACTGCATCAATATA+TGG | - | chr1.2:37131127-37131146 | MS.gene018865:CDS | 30.0% | |
| ! | TACCCTATAACTTTAAAGGA+TGG | + | chr1.2:37131784-37131803 | None:intergenic | 30.0% |
| ! | TGTTAAAGGTATGTCTTAGA+TGG | - | chr1.2:37133716-37133735 | MS.gene018865:CDS | 30.0% |
| !! | ACTCCATCCTTTAAAGTTAT+AGG | - | chr1.2:37131778-37131797 | MS.gene018865:intron | 30.0% |
| !! | CGGTCTAAAATAGTTTTACA+GGG | - | chr1.2:37133134-37133153 | MS.gene018865:intron | 30.0% |
| !! | CTAGTCTTGTAGTTTAATGT+CGG | - | chr1.2:37133114-37133133 | MS.gene018865:intron | 30.0% |
| !! | CTCCATCCTTTAAAGTTATA+GGG | - | chr1.2:37131779-37131798 | MS.gene018865:intron | 30.0% |
| !! | GGTCTAAAATAGTTTTACAG+GGG | - | chr1.2:37133135-37133154 | MS.gene018865:intron | 30.0% |
| !! | TCGGTCTAAAATAGTTTTAC+AGG | - | chr1.2:37133133-37133152 | MS.gene018865:intron | 30.0% |
| !! | TTATTTGTTTGTTGGTTCTC+TGG | + | chr1.2:37132680-37132699 | None:intergenic | 30.0% |
| AAACAGATTCGTGTCAACAA+TGG | - | chr1.2:37133859-37133878 | MS.gene018865:CDS | 35.0% | |
| AAAGTTATAGGGTAGCACTT+GGG | - | chr1.2:37131790-37131809 | MS.gene018865:intron | 35.0% | |
| AACAGATTCGTGTCAACAAT+GGG | - | chr1.2:37133860-37133879 | MS.gene018865:CDS | 35.0% | |
| AAGATTTCAGCACAACTTGA+GGG | + | chr1.2:37130991-37131010 | None:intergenic | 35.0% | |
| AATACTCAAGCAAATTGCAG+AGG | - | chr1.2:37133451-37133470 | MS.gene018865:intron | 35.0% | |
| AATTTCATGGTCCTGCAATA+TGG | + | chr1.2:37132816-37132835 | None:intergenic | 35.0% | |
| ACAAGACTAGTGAAAGAGAA+AGG | + | chr1.2:37133104-37133123 | None:intergenic | 35.0% | |
| ACATGGCAAAAATATTGCTC+AGG | - | chr1.2:37133475-37133494 | MS.gene018865:intron | 35.0% | |
| AGATTAGGAATGAACACAAC+TGG | + | chr1.2:37133886-37133905 | None:intergenic | 35.0% | |
| AGTGACATAGATGAGCTTAT+TGG | + | chr1.2:37133076-37133095 | None:intergenic | 35.0% | |
| ATAACTGCTTTCTCTCCTTT+AGG | - | chr1.2:37133383-37133402 | MS.gene018865:intron | 35.0% | |
| ATAGAAGAAGCTCTTCAACT+TGG | - | chr1.2:37131175-37131194 | MS.gene018865:intron | 35.0% | |
| ATCAATATATGGCTCAGAAG+AGG | - | chr1.2:37131138-37131157 | MS.gene018865:CDS | 35.0% | |
| ATGGAAGAATGCCAGAAATT+AGG | - | chr1.2:37132954-37132973 | MS.gene018865:intron | 35.0% | |
| ATTGTTAGTGACCCAAAGTT+TGG | + | chr1.2:37131236-37131255 | None:intergenic | 35.0% | |
| CTTGGGTGACATTAGTTATA+AGG | - | chr1.2:37131807-37131826 | MS.gene018865:intron | 35.0% | |
| CTTTATCACCTCCAAACTTT+GGG | - | chr1.2:37131222-37131241 | MS.gene018865:intron | 35.0% | |
| GATTCATCTCCACCTATATT+TGG | + | chr1.2:37133310-37133329 | None:intergenic | 35.0% | |
| GCAAAATACACACGAAGTAT+CGG | + | chr1.2:37132344-37132363 | None:intergenic | 35.0% | |
| GTAATTGAAGCGATCAAATC+AGG | - | chr1.2:37131094-37131113 | MS.gene018865:CDS | 35.0% | |
| GTGCTACCCTATAACTTTAA+AGG | + | chr1.2:37131788-37131807 | None:intergenic | 35.0% | |
| GTTGCTTAACATGTGTCTTA+GGG | + | chr1.2:37131605-37131624 | None:intergenic | 35.0% | |
| TAAAGTTATAGGGTAGCACT+TGG | - | chr1.2:37131789-37131808 | MS.gene018865:intron | 35.0% | |
| TAAGTAGCTACAAGTATCCA+CGG | - | chr1.2:37132400-37132419 | MS.gene018865:intron | 35.0% | |
| TATCATATACTGATACTCCG+TGG | + | chr1.2:37132420-37132439 | None:intergenic | 35.0% | |
| TCAAAACAACATGGAGCATA+AGG | - | chr1.2:37132777-37132796 | MS.gene018865:intron | 35.0% | |
| TCTTTATCACCTCCAAACTT+TGG | - | chr1.2:37131221-37131240 | MS.gene018865:intron | 35.0% | |
| TGAAATTGATGCCATATTGC+AGG | - | chr1.2:37132802-37132821 | MS.gene018865:intron | 35.0% | |
| TTAATGCCACCAAATATAGG+TGG | - | chr1.2:37133298-37133317 | MS.gene018865:intron | 35.0% | |
| TTAGATGGTTGTATGAGCAA+GGG | - | chr1.2:37133731-37133750 | MS.gene018865:CDS | 35.0% | |
| TTAGGCCTTGCAAAATCTAT+AGG | - | chr1.2:37132972-37132991 | MS.gene018865:intron | 35.0% | |
| TTGGGGTAGTAATGAAGTTA+TGG | - | chr1.2:37133421-37133440 | MS.gene018865:intron | 35.0% | |
| ! | AGTATCTAGCCTTCATATCA+TGG | - | chr1.2:37132461-37132480 | MS.gene018865:intron | 35.0% |
| ! | ATTTTGCAAGGCCTAATTTC+TGG | + | chr1.2:37132968-37132987 | None:intergenic | 35.0% |
| ! | CGGAGTATCAGTATATGATA+CGG | - | chr1.2:37132420-37132439 | MS.gene018865:intron | 35.0% |
| ! | TGACTCCTATAGATTTTGCA+AGG | + | chr1.2:37132980-37132999 | None:intergenic | 35.0% |
| ! | TTCATTCCTAATCTTTGGGA+TGG | - | chr1.2:37133892-37133911 | MS.gene018865:CDS | 35.0% |
| !! | ATTTGCTATCATTCCTCCTT+CGG | - | chr1.2:37133037-37133056 | MS.gene018865:intron | 35.0% |
| !! | TCATTCCTAATCTTTGGGAT+GGG | - | chr1.2:37133893-37133912 | MS.gene018865:CDS | 35.0% |
| AACATGCCAGTGATAGCATT+TGG | - | chr1.2:37131025-37131044 | MS.gene018865:CDS | 40.0% | |
| AACTTCATTACTACCCCAAC+TGG | + | chr1.2:37133420-37133439 | None:intergenic | 40.0% | |
| AAGCAAATTGCAGAGGAACA+TGG | - | chr1.2:37133458-37133477 | MS.gene018865:intron | 40.0% | |
| AAGGCTAGATACTCCAAACT+TGG | + | chr1.2:37132454-37132473 | None:intergenic | 40.0% | |
| CACTCCTTTCAGATCAAATG+TGG | + | chr1.2:37132925-37132944 | None:intergenic | 40.0% | |
| CATTTGATCTGAAAGGAGTG+TGG | - | chr1.2:37132925-37132944 | MS.gene018865:intron | 40.0% | |
| CTATCACTGGCATGTTACAT+TGG | + | chr1.2:37131021-37131040 | None:intergenic | 40.0% | |
| CTTAGATGGTTGTATGAGCA+AGG | - | chr1.2:37133730-37133749 | MS.gene018865:CDS | 40.0% | |
| GAAGATTTCAGCACAACTTG+AGG | + | chr1.2:37130992-37131011 | None:intergenic | 40.0% | |
| GCAGAGAATGAAGCAAAACT+TGG | - | chr1.2:37133783-37133802 | MS.gene018865:CDS | 40.0% | |
| GCTCTTCAACTTGGTCTAAT+TGG | - | chr1.2:37131184-37131203 | MS.gene018865:intron | 40.0% | |
| GCTGAATTCTAATTGGACGT+CGG | - | chr1.2:37133231-37133250 | MS.gene018865:intron | 40.0% | |
| GGTTGCTTAACATGTGTCTT+AGG | + | chr1.2:37131606-37131625 | None:intergenic | 40.0% | |
| TAGATGGTTGTATGAGCAAG+GGG | - | chr1.2:37133732-37133751 | MS.gene018865:CDS | 40.0% | |
| TCATCTCCACCTATATTTGG+TGG | + | chr1.2:37133307-37133326 | None:intergenic | 40.0% | |
| TTGGCCAGTGGATCAAATAA+AGG | + | chr1.2:37132851-37132870 | None:intergenic | 40.0% | |
| ! | GAGGTAAGACTTTTGCTTAC+TGG | + | chr1.2:37131297-37131316 | None:intergenic | 40.0% |
| ! | TGGACCTTTATTTGATCCAC+TGG | - | chr1.2:37132844-37132863 | MS.gene018865:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr1.2:37131735-37131754 | None:intergenic | 40.0% |
| !! | ATGTTAACTTGTGCCCTCAA+GGG | + | chr1.2:37131734-37131753 | None:intergenic | 40.0% |
| !! | CATTCCTAATCTTTGGGATG+GGG | - | chr1.2:37133894-37133913 | MS.gene018865:CDS | 40.0% |
| !! | TTGTTTGTTGGTTCTCTGGT+AGG | + | chr1.2:37132676-37132695 | None:intergenic | 40.0% |
| AGAGCAGGAAGAACAAGATG+AGG | + | chr1.2:37131262-37131281 | None:intergenic | 45.0% | |
| AGCTTCTTCTGATGCCAAAC+TGG | + | chr1.2:37133332-37133351 | None:intergenic | 45.0% | |
| AGGTGGAGATGAATCCAGTT+TGG | - | chr1.2:37133315-37133334 | MS.gene018865:intron | 45.0% | |
| CACTGGCATGTTACATTGGT+TGG | + | chr1.2:37131017-37131036 | None:intergenic | 45.0% | |
| CTTACTTGATTGACCGAAGG+AGG | + | chr1.2:37133053-37133072 | None:intergenic | 45.0% | |
| GCAGCTGTAACAAACAACGA+TGG | - | chr1.2:37131052-37131071 | MS.gene018865:CDS | 45.0% | |
| GCCAGTGATAGCATTTGGTA+CGG | - | chr1.2:37131030-37131049 | MS.gene018865:CDS | 45.0% | |
| GTTAGTGACCCAAAGTTTGG+AGG | + | chr1.2:37131233-37131252 | None:intergenic | 45.0% | |
| GTTTCCCCATCCCAAAGATT+AGG | + | chr1.2:37133901-37133920 | None:intergenic | 45.0% | |
| TACGGATACGTCTCCAAGTT+TGG | - | chr1.2:37132438-37132457 | MS.gene018865:intron | 45.0% | |
| TACGGCAATTCCCAATTTCC+CGG | + | chr1.2:37132885-37132904 | None:intergenic | 45.0% | |
| TATGGCTCAGAAGAGGCTTT+AGG | - | chr1.2:37131145-37131164 | MS.gene018865:CDS | 45.0% | |
| TCCTTAACATGTGCCCTTGA+GGG | - | chr1.2:37131718-37131737 | MS.gene018865:intron | 45.0% | |
| TGGCTTACTTGATTGACCGA+AGG | + | chr1.2:37133056-37133075 | None:intergenic | 45.0% | |
| TTCCTTAACATGTGCCCTTG+AGG | - | chr1.2:37131717-37131736 | MS.gene018865:intron | 45.0% | |
| ! | TCTCTCCTTTAGGAGCGAAA+GGG | - | chr1.2:37133393-37133412 | MS.gene018865:intron | 45.0% |
| ! | TGGAGTGATTTCTGAAGAGC+AGG | + | chr1.2:37131277-37131296 | None:intergenic | 45.0% |
| ! | TTCTCTCCTTTAGGAGCGAA+AGG | - | chr1.2:37133392-37133411 | MS.gene018865:intron | 45.0% |
| !!! | TTTATTTTAAATTAAAATTG+AGG | - | chr1.2:37131505-37131524 | MS.gene018865:CDS | 5.0% |
| CAGTGTGAAGCCGGGAAATT+GGG | - | chr1.2:37132872-37132891 | MS.gene018865:intron | 50.0% | |
| GAGAGGGAGATGCATCTCAT+AGG | - | chr1.2:37132551-37132570 | MS.gene018865:intron | 50.0% | |
| GCCGTACCAAATGCTATCAC+TGG | + | chr1.2:37131034-37131053 | None:intergenic | 50.0% | |
| GTATGAGCAAGGGGTGACTA+TGG | - | chr1.2:37133741-37133760 | MS.gene018865:CDS | 50.0% | |
| TCAGTGTGAAGCCGGGAAAT+TGG | - | chr1.2:37132871-37132890 | MS.gene018865:intron | 50.0% | |
| TTTCCCGGCTTCACACTGAT+TGG | + | chr1.2:37132870-37132889 | None:intergenic | 50.0% | |
| ! | CTCTCCTTTAGGAGCGAAAG+GGG | - | chr1.2:37133394-37133413 | MS.gene018865:intron | 50.0% |
| ! | GAAAGGAGTGTGGACAGCAA+TGG | - | chr1.2:37132935-37132954 | MS.gene018865:intron | 50.0% |
| CTGGCCAATCAGTGTGAAGC+CGG | - | chr1.2:37132863-37132882 | MS.gene018865:intron | 55.0% | |
| TGGCCAATCAGTGTGAAGCC+GGG | - | chr1.2:37132864-37132883 | MS.gene018865:intron | 55.0% | |
| ! | GCCCTCAAGGGCACATGTTA+AGG | + | chr1.2:37131722-37131741 | None:intergenic | 55.0% |
| ! | GCTTCACACTGATTGGCCAG+TGG | + | chr1.2:37132863-37132882 | None:intergenic | 55.0% |
| AGGAGCGAAAGGGGCCAGTT+GGG | - | chr1.2:37133403-37133422 | MS.gene018865:intron | 60.0% | |
| CTGGCCCCTTTCGCTCCTAA+AGG | + | chr1.2:37133401-37133420 | None:intergenic | 60.0% | |
| TAGGAGCGAAAGGGGCCAGT+TGG | - | chr1.2:37133402-37133421 | MS.gene018865:intron | 60.0% | |
| GGAGCGAAAGGGGCCAGTTG+GGG | - | chr1.2:37133404-37133423 | MS.gene018865:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 37130971 | 37133924 | 37130971 | ID=MS.gene018865 |
| chr1.2 | mRNA | 37130971 | 37133924 | 37130971 | ID=MS.gene018865.t1;Parent=MS.gene018865 |
| chr1.2 | exon | 37133599 | 37133924 | 37133599 | ID=MS.gene018865.t1.exon1;Parent=MS.gene018865.t1 |
| chr1.2 | CDS | 37133599 | 37133924 | 37133599 | ID=cds.MS.gene018865.t1;Parent=MS.gene018865.t1 |
| chr1.2 | exon | 37131828 | 37132071 | 37131828 | ID=MS.gene018865.t1.exon2;Parent=MS.gene018865.t1 |
| chr1.2 | CDS | 37131828 | 37132071 | 37131828 | ID=cds.MS.gene018865.t1;Parent=MS.gene018865.t1 |
| chr1.2 | exon | 37131399 | 37131578 | 37131399 | ID=MS.gene018865.t1.exon3;Parent=MS.gene018865.t1 |
| chr1.2 | CDS | 37131399 | 37131578 | 37131399 | ID=cds.MS.gene018865.t1;Parent=MS.gene018865.t1 |
| chr1.2 | exon | 37130971 | 37131171 | 37130971 | ID=MS.gene018865.t1.exon4;Parent=MS.gene018865.t1 |
| chr1.2 | CDS | 37130971 | 37131171 | 37130971 | ID=cds.MS.gene018865.t1;Parent=MS.gene018865.t1 |
| Gene Sequence |
| Protein sequence |
