AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42146


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42146.t1 MTR_7g070500 97.508 321 8 0 1 321 1 321 0.0 656
MS.gene42146.t1 MTR_7g070500 97.260 292 8 0 1 292 1 292 0.0 596
MS.gene42146.t1 MTR_8g070095 45.541 314 160 7 15 320 8 318 2.04e-89 270
MS.gene42146.t1 MTR_8g070115 44.586 314 167 5 11 320 4 314 2.02e-85 260
MS.gene42146.t1 MTR_7g063580 45.338 311 164 5 13 320 46 353 2.05e-85 261
MS.gene42146.t1 MTR_4g021350 44.839 310 166 5 13 320 6 312 5.71e-82 251
MS.gene42146.t1 MTR_4g072320 40.260 308 172 6 17 318 11 312 4.94e-77 238
MS.gene42146.t1 MTR_4g021350 45.878 279 148 3 13 289 6 283 1.78e-74 231
MS.gene42146.t1 MTR_4g072350 39.871 311 175 7 17 318 11 318 3.44e-74 231
MS.gene42146.t1 MTR_4g072360 38.907 311 178 6 17 318 11 318 9.01e-74 230
MS.gene42146.t1 MTR_6g073110 36.656 311 185 6 17 318 11 318 1.76e-71 224
MS.gene42146.t1 MTR_4g021410 40.323 310 167 6 15 320 9 304 4.01e-71 223
MS.gene42146.t1 MTR_0374s0050 39.286 308 167 6 22 320 19 315 7.60e-71 223
MS.gene42146.t1 MTR_3g083130 37.864 309 167 8 23 320 21 315 1.25e-69 219
MS.gene42146.t1 MTR_4g036845 37.942 311 182 7 17 320 8 314 1.29e-69 219
MS.gene42146.t1 MTR_4g021450 40.000 310 168 6 15 320 9 304 5.85e-69 217
MS.gene42146.t1 MTR_4g021410 40.714 280 148 6 45 320 2 267 1.88e-62 199
MS.gene42146.t1 MTR_5g097900 39.223 283 163 6 23 298 20 300 3.71e-59 192
MS.gene42146.t1 MTR_5g097910 39.223 283 163 6 23 298 20 300 3.84e-59 192
MS.gene42146.t1 MTR_5g097940 39.223 283 163 6 23 298 20 300 3.84e-59 192
MS.gene42146.t1 MTR_4g072060 37.710 297 168 6 14 295 2 296 9.40e-52 173
MS.gene42146.t1 MTR_4g021410 40.496 242 127 5 82 320 1 228 2.79e-51 169
MS.gene42146.t1 MTR_4g021450 40.083 242 128 5 82 320 1 228 1.55e-49 165
MS.gene42146.t1 MTR_4g021450 36.842 190 111 4 134 320 2 185 1.04e-42 145
MS.gene42146.t1 MTR_6g072650 34.899 149 75 4 170 318 8 134 6.41e-22 90.1
MS.gene42146.t1 MTR_6g072710 32.727 110 71 1 190 296 1 110 3.02e-17 76.6
MS.gene42146.t1 MTR_3g092140 24.167 360 200 12 10 314 32 373 3.02e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42146.t1 AT5G01670 73.463 309 82 0 13 321 14 322 0.0 508
MS.gene42146.t1 AT5G01670 67.560 336 82 1 13 321 14 349 5.46e-177 493
MS.gene42146.t1 AT2G37770 44.516 310 165 5 15 320 8 314 1.23e-90 273
MS.gene42146.t1 AT3G53880 43.871 310 167 5 15 320 8 314 9.49e-87 263
MS.gene42146.t1 AT2G37790 42.628 312 171 6 13 320 6 313 1.30e-85 260
MS.gene42146.t1 AT2G37760 41.290 310 171 5 15 320 8 310 6.20e-82 251
MS.gene42146.t1 AT2G37760 41.290 310 171 5 15 320 8 310 6.20e-82 251
MS.gene42146.t1 AT3G53880 44.803 279 149 3 15 289 8 285 2.35e-79 244
MS.gene42146.t1 AT2G37760 43.007 286 154 4 15 296 8 288 2.70e-78 241
MS.gene42146.t1 AT2G37760 43.007 286 153 5 15 296 8 287 4.73e-77 238
MS.gene42146.t1 AT2G37760 43.007 286 153 5 15 296 8 287 4.73e-77 238
MS.gene42146.t1 AT5G62420 40.895 313 171 9 17 320 8 315 3.58e-71 223
MS.gene42146.t1 AT1G59960 37.864 309 181 6 21 320 19 325 8.94e-69 218
MS.gene42146.t1 AT2G37760 40.909 264 149 4 61 320 4 264 1.19e-67 213
MS.gene42146.t1 AT2G37760 40.909 264 149 4 61 320 4 264 1.19e-67 213
MS.gene42146.t1 AT1G59950 38.835 309 178 5 21 320 13 319 6.27e-62 200
MS.gene42146.t1 AT2G21250 37.543 293 166 6 17 294 5 295 8.03e-61 196
MS.gene42146.t1 AT2G21260 36.879 282 161 5 17 283 5 284 1.94e-59 193
MS.gene42146.t1 AT2G37770 44.949 198 107 2 15 211 8 204 2.09e-54 179
MS.gene42146.t1 AT2G21250 40.385 208 113 5 19 217 7 212 1.08e-44 152
MS.gene42146.t1 AT2G21260 34.123 211 123 4 87 283 8 216 5.82e-37 132
MS.gene42146.t1 AT5G53580 23.642 313 171 10 22 282 46 342 2.97e-12 67.0

Find 99 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTCTCTTTGATCCTATT+TGG 0.130110 7.3:+34168652 None:intergenic
AGGGCAGGTCTTACCCTTTC+AGG 0.145363 7.3:+34169683 None:intergenic
TGGACTCTTGTTCAGCTTCT+TGG 0.206886 7.3:+34168738 None:intergenic
TCAAGAGTGTAGAAGATATC+TGG 0.262803 7.3:-34168069 MS.gene42146:CDS
AGATCAAATGACTTTGTCTT+TGG 0.288456 7.3:+34170642 None:intergenic
GTTACATTATTACCATAGTT+TGG 0.298996 7.3:+34169814 None:intergenic
GTGTTGTTGTCTAATCTTCA+TGG 0.325513 7.3:+34168044 None:intergenic
AGTTTGACATGGAAGGAGTT+TGG 0.334460 7.3:-34169455 MS.gene42146:CDS
CCTATTTGGATTGGTTGATC+TGG 0.334881 7.3:+34168666 None:intergenic
AGAATGTGGTTGTCTTCAAT+TGG 0.337034 7.3:-34168636 MS.gene42146:CDS
CTCTTTGATCCTATTTGGAT+TGG 0.343351 7.3:+34168657 None:intergenic
ATTGACACTGCTGCTCAATA+TGG 0.348186 7.3:-34170393 MS.gene42146:CDS
AGTTTGTTGAAGTCATTATC+TGG 0.353582 7.3:+34168607 None:intergenic
CCAGATCAACCAATCCAAAT+AGG 0.362228 7.3:-34168666 MS.gene42146:CDS
TCCGACACTTCTCCTGCTTT+AGG 0.365490 7.3:+34169477 None:intergenic
GGATTAGGCACATGGAAATC+TGG 0.369663 7.3:-34170591 MS.gene42146:CDS
GAATGACACTTGTCCCTCTC+TGG 0.371417 7.3:+34168689 None:intergenic
GCCCCATCTTTCAATTGAAA+TGG 0.373597 7.3:+34169510 None:intergenic
TATTTATCACCTCCAAACTA+TGG 0.395048 7.3:-34169826 MS.gene42146:intron
CCTTTCCACTCCTGCTTGCA+TGG 0.395594 7.3:+34169856 None:intergenic
GGGCAGGTCTTACCCTTTCA+GGG 0.397531 7.3:+34169684 None:intergenic
TTGTGATCCAAGTGGTGAAT+AGG 0.411559 7.3:+34168807 None:intergenic
GGAAGGAGTTTGGAGAGAAA+TGG 0.418801 7.3:-34169445 MS.gene42146:CDS
TGACTACCTTGATCTTTACT+TGG 0.423950 7.3:-34169633 MS.gene42146:intron
CTATTTGGATTGGTTGATCT+GGG 0.431553 7.3:+34168667 None:intergenic
TGATAGATGGAGATGCATCC+TGG 0.439109 7.3:-34169149 MS.gene42146:intron
GACTTTGTCTTTGGTTCATG+TGG 0.440898 7.3:+34170651 None:intergenic
GGACATAGCATACCTGCTAT+TGG 0.445028 7.3:-34170612 MS.gene42146:CDS
CACTTCACCAACACCTGACC+TGG 0.451981 7.3:+34168718 None:intergenic
AAAGATCAAGGTAGTCAAGT+TGG 0.459513 7.3:+34169639 None:intergenic
GGCCATTTCAATTGAAAGAT+GGG 0.461430 7.3:-34169512 MS.gene42146:CDS
TCCTATCAACCGTTTGATCA+TGG 0.465441 7.3:+34168764 None:intergenic
TGGCCATTTCAATTGAAAGA+TGG 0.465780 7.3:-34169513 MS.gene42146:CDS
GAAAATCTTGTTAGAGACAT+TGG 0.467373 7.3:-34169408 MS.gene42146:CDS
TCCATGATCAAACGGTTGAT+AGG 0.467631 7.3:-34168765 MS.gene42146:CDS
GAATGTGGTTGTCTTCAATT+GGG 0.471794 7.3:-34168635 MS.gene42146:CDS
GGCTGTGAAGACAGAATTGA+TGG 0.476481 7.3:+34170560 None:intergenic
CAGGTCAGGTGTTGGTGAAG+TGG 0.483790 7.3:-34168717 MS.gene42146:CDS
TTCTTGAAGGGTATTGTTGA+GGG 0.484188 7.3:+34169664 None:intergenic
ACTTAGCAAAATACTAGATC+AGG 0.496846 7.3:-34168587 MS.gene42146:intron
AGTTATGCCTTCTGTATGCC+AGG 0.498861 7.3:-34169334 MS.gene42146:intron
GCAAGCAGGCCTCCTAAAGC+AGG 0.500088 7.3:-34169489 MS.gene42146:CDS
AGGTCAGGTGTTGGTGAAGT+GGG 0.502802 7.3:-34168716 MS.gene42146:CDS
GACACTTGTCCCTCTCTGGA+TGG 0.503528 7.3:+34168693 None:intergenic
TGAAGGGTATTGTTGAGGGC+AGG 0.510534 7.3:+34169668 None:intergenic
ATCTGCCATGCAAGCAGGAG+TGG 0.514366 7.3:-34169861 MS.gene42146:CDS
CTCGAGGCTTGCAAGAAGAA+TGG 0.522910 7.3:-34169107 MS.gene42146:CDS
CTTCAATCTGCCATGCAAGC+AGG 0.523391 7.3:-34169866 MS.gene42146:CDS
GCTGAACAAGAGTCCAGGTC+AGG 0.523695 7.3:-34168731 MS.gene42146:CDS
CAAGAGTGTAGAAGATATCT+GGG 0.524323 7.3:-34168068 MS.gene42146:CDS
CACTGACTTGACCCCTGAAA+GGG 0.529708 7.3:-34169696 MS.gene42146:CDS
TCACTCTTACTAAACTTGAC+AGG 0.532116 7.3:-34169374 MS.gene42146:CDS
ATATCTTCTACACTCTTGAA+TGG 0.532612 7.3:+34168073 None:intergenic
CTGCTATTGGATTAGGCACA+TGG 0.534022 7.3:-34170599 MS.gene42146:CDS
ATCTAGGCCTATTCACCACT+TGG 0.535647 7.3:-34168814 MS.gene42146:intron
GTTCTTGAAGGGTATTGTTG+AGG 0.537564 7.3:+34169663 None:intergenic
AGATCTCATCCATGATCAAA+CGG 0.545033 7.3:-34168773 MS.gene42146:CDS
AGCATACCTGCTATTGGATT+AGG 0.546580 7.3:-34170606 MS.gene42146:CDS
AATTGAAAGATGGGGCAAGC+AGG 0.547430 7.3:-34169503 MS.gene42146:CDS
CATGTGCCTAATCCAATAGC+AGG 0.547561 7.3:+34170600 None:intergenic
CACTTGGATCACAAGATGGT+GGG 0.551885 7.3:-34168798 MS.gene42146:CDS
GACACTTCTCCTGCTTTAGG+AGG 0.559526 7.3:+34169480 None:intergenic
AAGAAGCTGAACAAGAGTCC+AGG 0.562391 7.3:-34168736 MS.gene42146:CDS
CTCTTTGTGAACAAGAGTGA+AGG 0.563000 7.3:-34168097 MS.gene42146:CDS
AGTCAAGTTGGAGTTCTTGA+AGG 0.563641 7.3:+34169651 None:intergenic
TAATTACCAAGTAAAGATCA+AGG 0.571419 7.3:+34169627 None:intergenic
GGCAGGTCTTACCCTTTCAG+GGG 0.574124 7.3:+34169685 None:intergenic
ATCTTATCATTTCTCCACCC+AGG 0.577692 7.3:+34169131 None:intergenic
GCACTGACTTGACCCCTGAA+AGG 0.579210 7.3:-34169697 MS.gene42146:CDS
GGAATGTGATGCAGATTCAC+TGG 0.583292 7.3:-34169533 MS.gene42146:intron
CTTCACTCTTGTTCACAAAG+AGG 0.584164 7.3:+34168098 None:intergenic
CAAGAGTCCAGGTCAGGTGT+TGG 0.584504 7.3:-34168725 MS.gene42146:CDS
TTATGTAAATTACCGTGACA+TGG 0.586984 7.3:+34169081 None:intergenic
ACATTATTACCATAGTTTGG+AGG 0.588222 7.3:+34169817 None:intergenic
GTGTCGGAGTTTGACATGGA+AGG 0.588377 7.3:-34169462 MS.gene42146:CDS
TCCTAAAGCAGGAGAAGTGT+CGG 0.588577 7.3:-34169478 MS.gene42146:CDS
AAGTCATTTGATCTGTTGAG+TGG 0.588957 7.3:-34170633 MS.gene42146:CDS
AGAAGTGTCGGAGTTTGACA+TGG 0.590140 7.3:-34169466 MS.gene42146:CDS
TCACCACTTGGATCACAAGA+TGG 0.595948 7.3:-34168802 MS.gene42146:CDS
GCCATTTCAATTGAAAGATG+GGG 0.596613 7.3:-34169511 MS.gene42146:CDS
CCATGCAAGCAGGAGTGGAA+AGG 0.597890 7.3:-34169856 MS.gene42146:CDS
GTGAAGTGGGCCATCCAGAG+AGG 0.598428 7.3:-34168703 MS.gene42146:CDS
GCAAGCAGGAGTGGAAAGGA+AGG 0.599340 7.3:-34169852 MS.gene42146:CDS
GTCAAGTTGGAGTTCTTGAA+GGG 0.600789 7.3:+34169652 None:intergenic
TGTCTTCACAGCCATTGTTG+AGG 0.607802 7.3:-34170550 MS.gene42146:intron
AAATAGGATCAAAGAGAATG+TGG 0.610632 7.3:-34168650 MS.gene42146:CDS
TACATTAGTTACCTCAACAA+TGG 0.614186 7.3:+34170539 None:intergenic
GATAGATGGAGATGCATCCT+GGG 0.616882 7.3:-34169148 MS.gene42146:intron
CCACTTGGATCACAAGATGG+TGG 0.616995 7.3:-34168799 MS.gene42146:CDS
GAAGAATGGCATCCATGTCA+CGG 0.626497 7.3:-34169093 MS.gene42146:intron
TCTTTGTGAACAAGAGTGAA+GGG 0.629454 7.3:-34168096 MS.gene42146:CDS
TGAAGTGGGCCATCCAGAGA+GGG 0.636239 7.3:-34168702 MS.gene42146:CDS
AGAAATGGAGAAGCTTGTCA+AGG 0.657989 7.3:-34169430 MS.gene42146:CDS
CCACCATCTTGTGATCCAAG+TGG 0.660818 7.3:+34168799 None:intergenic
TCAATATGGAGTTCAAGAAG+AGG 0.670116 7.3:-34170379 MS.gene42146:intron
GAGAAATGATAAGATGCTCG+AGG 0.690115 7.3:-34169123 MS.gene42146:CDS
AGATGGAGATGCATCCTGGG+TGG 0.703215 7.3:-34169145 MS.gene42146:CDS
ATGCAGAGGAGAGTCCTCGA+CGG 0.707107 7.3:-34168127 MS.gene42146:intron
CAAAGAGGTCTTCACCGTCG+AGG 0.713453 7.3:+34168113 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAGAAAAATTAAATT+AGG + chr7.3:34169835-34169854 None:intergenic 10.0%
!!! ATATTTATAATTTGTGTATA+TGG - chr7.3:34169537-34169556 MS.gene42146:intron 10.0%
!! AATTAATCAATAGATTATGT+CGG + chr7.3:34168780-34168799 None:intergenic 15.0%
!! ATAAATTTGTCAGTAATTAT+TGG - chr7.3:34170406-34170425 MS.gene42146:CDS 15.0%
!! TAAAGATCTATATATCAATT+CGG + chr7.3:34170237-34170256 None:intergenic 15.0%
!!! ACATAAAGGTTTTAAATAAA+GGG - chr7.3:34169659-34169678 MS.gene42146:CDS 15.0%
!!! TACATAAAGGTTTTAAATAA+AGG - chr7.3:34169658-34169677 MS.gene42146:CDS 15.0%
!!! TTTTTCTTCATTTGTTTATA+TGG - chr7.3:34169842-34169861 MS.gene42146:CDS 15.0%
!! AAGATTCATTTAATGTCTTA+AGG - chr7.3:34169433-34169452 MS.gene42146:CDS 20.0%
!! GGATTTAAAGATAAATTGAA+AGG + chr7.3:34169138-34169157 None:intergenic 20.0%
!! GTTGAAATAATTGAATTTGT+TGG - chr7.3:34168974-34168993 MS.gene42146:intron 20.0%
!! TTGTGATTGAATTTATTGAT+TGG - chr7.3:34169867-34169886 MS.gene42146:CDS 20.0%
! ACATATTTCAGTGTAATCAT+AGG - chr7.3:34168684-34168703 MS.gene42146:CDS 25.0%
! ACCTCTTTATATGAAACTAA+TGG + chr7.3:34168483-34168502 None:intergenic 25.0%
! ATTGTTAATGTCATCCAAAA+TGG - chr7.3:34170259-34170278 MS.gene42146:intron 25.0%
! ATTTAATGTCTTAAGGTCTA+TGG - chr7.3:34169440-34169459 MS.gene42146:CDS 25.0%
! CCTCTTTATATGAAACTAAT+GGG + chr7.3:34168482-34168501 None:intergenic 25.0%
! GTTACATTATTACCATAGTT+TGG + chr7.3:34168912-34168931 None:intergenic 25.0%
! TAATTACCAAGTAAAGATCA+AGG + chr7.3:34169099-34169118 None:intergenic 25.0%
! TGTTTATACCTATACTCTTT+AGG - chr7.3:34168944-34168963 MS.gene42146:intron 25.0%
!! AGAATGAACATAATTTTACC+TGG + chr7.3:34169410-34169429 None:intergenic 25.0%
!! ATATCAATTCGGAACTATTT+TGG + chr7.3:34170226-34170245 None:intergenic 25.0%
!! TATGAAGTTTAGGTTTCTTA+TGG + chr7.3:34170441-34170460 None:intergenic 25.0%
!! TTTGTTGGTGTGAAATTTTA+TGG - chr7.3:34168989-34169008 MS.gene42146:intron 25.0%
!!! GAATGTTCTAAAGTTTTTGT+AGG - chr7.3:34168257-34168276 MS.gene42146:intron 25.0%
!!! GTAATCAAGGTTTTAAACAA+AGG + chr7.3:34169806-34169825 None:intergenic 25.0%
AAATAGGATCAAAGAGAATG+TGG - chr7.3:34170073-34170092 MS.gene42146:intron 30.0%
ACATTATTACCATAGTTTGG+AGG + chr7.3:34168909-34168928 None:intergenic 30.0%
ACATTCTCTTTGATCCTATT+TGG + chr7.3:34170074-34170093 None:intergenic 30.0%
ACTAATTGGAACTCATTACT+CGG - chr7.3:34170542-34170561 MS.gene42146:intron 30.0%
ACTTAGCAAAATACTAGATC+AGG - chr7.3:34170136-34170155 MS.gene42146:intron 30.0%
AGAAGTAGAAAAGAGAAAGA+TGG + chr7.3:34169159-34169178 None:intergenic 30.0%
AGATCAAATGACTTTGTCTT+TGG + chr7.3:34168084-34168103 None:intergenic 30.0%
ATATCTTCTACACTCTTGAA+TGG + chr7.3:34170653-34170672 None:intergenic 30.0%
ATTAATCCTTCCTAAACTCT+AGG + chr7.3:34168523-34168542 None:intergenic 30.0%
GAAAATCTTGTTAGAGACAT+TGG - chr7.3:34169315-34169334 MS.gene42146:intron 30.0%
GAAAGAGTGAATAGGAAAAT+TGG - chr7.3:34170188-34170207 MS.gene42146:intron 30.0%
GTATCAATAAGCAATGAAAG+TGG + chr7.3:34170576-34170595 None:intergenic 30.0%
TACATTAGTTACCTCAACAA+TGG + chr7.3:34168187-34168206 None:intergenic 30.0%
TATTTATCACCTCCAAACTA+TGG - chr7.3:34168897-34168916 MS.gene42146:intron 30.0%
TCTCAAATTATTGTTCGTGT+CGG + chr7.3:34168659-34168678 None:intergenic 30.0%
TGTCACGGTAATTTACATAA+AGG - chr7.3:34169645-34169664 MS.gene42146:CDS 30.0%
TTATGTAAATTACCGTGACA+TGG + chr7.3:34169645-34169664 None:intergenic 30.0%
TTCATATAAAGAGGTAGATG+AGG - chr7.3:34168488-34168507 MS.gene42146:intron 30.0%
TTCCTATTCACTCTTTCTAA+AGG + chr7.3:34170185-34170204 None:intergenic 30.0%
TTCTACTTCTTTCATTCATG+AGG - chr7.3:34169169-34169188 MS.gene42146:intron 30.0%
TTGATGTGTCTATGAAGTTT+AGG + chr7.3:34170451-34170470 None:intergenic 30.0%
! AAATTGTGAATTTTGTGTGC+AGG - chr7.3:34168293-34168312 MS.gene42146:intron 30.0%
! AATTAGGAGTGTAGTAATCA+AGG + chr7.3:34169819-34169838 None:intergenic 30.0%
! CATAAAGACCTAAAGAGTAT+AGG + chr7.3:34168955-34168974 None:intergenic 30.0%
! CCCATTAGTTTCATATAAAG+AGG - chr7.3:34168479-34168498 MS.gene42146:intron 30.0%
! GTTTTGTGAATTGTGATAGA+TGG - chr7.3:34169561-34169580 MS.gene42146:intron 30.0%
!! AGTTTGTTGAAGTCATTATC+TGG + chr7.3:34170119-34170138 None:intergenic 30.0%
AAAGATCAAGGTAGTCAAGT+TGG + chr7.3:34169087-34169106 None:intergenic 35.0%
AACAGTTGTGTTGTGATCTT+TGG - chr7.3:34169688-34169707 MS.gene42146:CDS 35.0%
AAGTCATTTGATCTGTTGAG+TGG - chr7.3:34168090-34168109 MS.gene42146:CDS 35.0%
ACGTGTCACATCATACTAAT+TGG - chr7.3:34170528-34170547 MS.gene42146:intron 35.0%
ACTAGATCAGGTAGGTTAAT+TGG - chr7.3:34170148-34170167 MS.gene42146:intron 35.0%
AGAATGTGGTTGTCTTCAAT+TGG - chr7.3:34170087-34170106 MS.gene42146:intron 35.0%
AGATCTCATCCATGATCAAA+CGG - chr7.3:34169950-34169969 MS.gene42146:intron 35.0%
AGCAAAATACTAGATCAGGT+AGG - chr7.3:34170140-34170159 MS.gene42146:intron 35.0%
ATCAATAGATTATGTCGGCA+CGG + chr7.3:34168775-34168794 None:intergenic 35.0%
ATGAAATTCAGGTCGTCTTA+CGG - chr7.3:34170383-34170402 MS.gene42146:CDS 35.0%
CTAATTGGAACTCATTACTC+GGG - chr7.3:34170543-34170562 MS.gene42146:intron 35.0%
CTCTTTGATCCTATTTGGAT+TGG + chr7.3:34170069-34170088 None:intergenic 35.0%
GAATGTGGTTGTCTTCAATT+GGG - chr7.3:34170088-34170107 MS.gene42146:intron 35.0%
GCAGTCAAATGAAATTGATG+CGG - chr7.3:34169733-34169752 MS.gene42146:intron 35.0%
GCCATTTCAATTGAAAGATG+GGG - chr7.3:34169212-34169231 MS.gene42146:intron 35.0%
GGCCATTTCAATTGAAAGAT+GGG - chr7.3:34169211-34169230 MS.gene42146:intron 35.0%
TAAGACGACCTGAATTTCAT+AGG + chr7.3:34170383-34170402 None:intergenic 35.0%
TAGTGCGATGACATTTATGT+GGG - chr7.3:34170475-34170494 MS.gene42146:intron 35.0%
TCAATATGGAGTTCAAGAAG+AGG - chr7.3:34168344-34168363 MS.gene42146:intron 35.0%
TCACTCTTACTAAACTTGAC+AGG - chr7.3:34169349-34169368 MS.gene42146:CDS 35.0%
TCTTACTTGTCCCACTAAAT+AGG - chr7.3:34168823-34168842 MS.gene42146:intron 35.0%
TCTTTGTGAACAAGAGTGAA+GGG - chr7.3:34170627-34170646 MS.gene42146:CDS 35.0%
TGAATTTCATAGGCACTAGT+GGG + chr7.3:34170373-34170392 None:intergenic 35.0%
TGACTACCTTGATCTTTACT+TGG - chr7.3:34169090-34169109 MS.gene42146:intron 35.0%
TGGCCATTTCAATTGAAAGA+TGG - chr7.3:34169210-34169229 MS.gene42146:intron 35.0%
TGTCAAAATTGCTGCTATCT+AGG - chr7.3:34169893-34169912 MS.gene42146:intron 35.0%
TTAAGGTCTATGGTATTGCT+TGG - chr7.3:34169450-34169469 MS.gene42146:CDS 35.0%
TTGCTTATTGATACATGCAG+AGG - chr7.3:34170582-34170601 MS.gene42146:CDS 35.0%
! AATTTTACCTGGCATACAGA+AGG + chr7.3:34169399-34169418 None:intergenic 35.0%
! AATTTTATGGCTGCTATGCT+AGG - chr7.3:34169002-34169021 MS.gene42146:intron 35.0%
! CAAGAGTGTAGAAGATATCT+GGG - chr7.3:34170655-34170674 MS.gene42146:CDS 35.0%
! GTCCTTTAGAAAGAGTGAAT+AGG - chr7.3:34170180-34170199 MS.gene42146:intron 35.0%
! TCAAGAGTGTAGAAGATATC+TGG - chr7.3:34170654-34170673 MS.gene42146:CDS 35.0%
!! CTATTTGGATTGGTTGATCT+GGG + chr7.3:34170059-34170078 None:intergenic 35.0%
!! TTCTTGAAGGGTATTGTTGA+GGG + chr7.3:34169062-34169081 None:intergenic 35.0%
ACATTTATGTGGGATCAACG+TGG - chr7.3:34170485-34170504 MS.gene42146:intron 40.0%
ACGGACACTTATCGGATTAA+GGG + chr7.3:34168756-34168775 None:intergenic 40.0%
ACTTGTCCCACTAAATAGGT+TGG - chr7.3:34168827-34168846 MS.gene42146:intron 40.0%
AGAAATGGAGAAGCTTGTCA+AGG - chr7.3:34169293-34169312 MS.gene42146:intron 40.0%
AGCATACCTGCTATTGGATT+AGG - chr7.3:34168117-34168136 MS.gene42146:CDS 40.0%
AGGAAAATTGGTCCAAGCAT+CGG - chr7.3:34170200-34170219 MS.gene42146:intron 40.0%
AGTTTGACATGGAAGGAGTT+TGG - chr7.3:34169268-34169287 MS.gene42146:intron 40.0%
ATCTTATCATTTCTCCACCC+AGG + chr7.3:34169595-34169614 None:intergenic 40.0%
ATTGACACTGCTGCTCAATA+TGG - chr7.3:34168330-34168349 MS.gene42146:intron 40.0%
CAATAGTAGAAGTCAACGGA+CGG + chr7.3:34170286-34170305 None:intergenic 40.0%
CACTAGTGCCTATGAAATTC+AGG - chr7.3:34170372-34170391 MS.gene42146:intron 40.0%
CATTTGACTGCAATTCTCTG+TGG + chr7.3:34169724-34169743 None:intergenic 40.0%
CCAGATCAACCAATCCAAAT+AGG - chr7.3:34170057-34170076 MS.gene42146:intron 40.0%
CTCTTTGTGAACAAGAGTGA+AGG - chr7.3:34170626-34170645 MS.gene42146:CDS 40.0%
CTGAATTTCATAGGCACTAG+TGG + chr7.3:34170374-34170393 None:intergenic 40.0%
CTTCACTCTTGTTCACAAAG+AGG + chr7.3:34170628-34170647 None:intergenic 40.0%
GAGAAATGATAAGATGCTCG+AGG - chr7.3:34169600-34169619 MS.gene42146:intron 40.0%
GATTGTCATGCCTAGAGTTT+AGG - chr7.3:34168510-34168529 MS.gene42146:intron 40.0%
GCATGTCCAACCTATTTAGT+GGG + chr7.3:34168836-34168855 None:intergenic 40.0%
GCCCCATCTTTCAATTGAAA+TGG + chr7.3:34169216-34169235 None:intergenic 40.0%
GCTCCAATAGTAGAAGTCAA+CGG + chr7.3:34170290-34170309 None:intergenic 40.0%
GTAGTGCGATGACATTTATG+TGG - chr7.3:34170474-34170493 MS.gene42146:intron 40.0%
TCCATGATCAAACGGTTGAT+AGG - chr7.3:34169958-34169977 MS.gene42146:intron 40.0%
TCCTATCAACCGTTTGATCA+TGG + chr7.3:34169962-34169981 None:intergenic 40.0%
TGCATGTCCAACCTATTTAG+TGG + chr7.3:34168837-34168856 None:intergenic 40.0%
TTGTGATCCAAGTGGTGAAT+AGG + chr7.3:34169919-34169938 None:intergenic 40.0%
! GACTTTGTCTTTGGTTCATG+TGG + chr7.3:34168075-34168094 None:intergenic 40.0%
!! AGTCAAGTTGGAGTTCTTGA+AGG + chr7.3:34169075-34169094 None:intergenic 40.0%
!! CCTATTTGGATTGGTTGATC+TGG + chr7.3:34170060-34170079 None:intergenic 40.0%
!! GTCAAGTTGGAGTTCTTGAA+GGG + chr7.3:34169074-34169093 None:intergenic 40.0%
!! GTTCTTGAAGGGTATTGTTG+AGG + chr7.3:34169063-34169082 None:intergenic 40.0%
AAGAAGCTGAACAAGAGTCC+AGG - chr7.3:34169987-34170006 MS.gene42146:intron 45.0%
AATTGAAAGATGGGGCAAGC+AGG - chr7.3:34169220-34169239 MS.gene42146:intron 45.0%
AGTTATGCCTTCTGTATGCC+AGG - chr7.3:34169389-34169408 MS.gene42146:CDS 45.0%
ATCTAGGCCTATTCACCACT+TGG - chr7.3:34169909-34169928 MS.gene42146:intron 45.0%
CACGGACACTTATCGGATTA+AGG + chr7.3:34168757-34168776 None:intergenic 45.0%
CACTTGGATCACAAGATGGT+GGG - chr7.3:34169925-34169944 MS.gene42146:intron 45.0%
CATGTGCCTAATCCAATAGC+AGG + chr7.3:34168126-34168145 None:intergenic 45.0%
CTACTATTGGAGCTATGACG+TGG - chr7.3:34170297-34170316 MS.gene42146:intron 45.0%
GAAGAATGGCATCCATGTCA+CGG - chr7.3:34169630-34169649 MS.gene42146:intron 45.0%
GATAGATGGAGATGCATCCT+GGG - chr7.3:34169575-34169594 MS.gene42146:intron 45.0%
GGAAGGAGTTTGGAGAGAAA+TGG - chr7.3:34169278-34169297 MS.gene42146:intron 45.0%
GGAATGTGATGCAGATTCAC+TGG - chr7.3:34169190-34169209 MS.gene42146:intron 45.0%
GGACATAGCATACCTGCTAT+TGG - chr7.3:34168111-34168130 MS.gene42146:CDS 45.0%
GGATTAGGCACATGGAAATC+TGG - chr7.3:34168132-34168151 MS.gene42146:intron 45.0%
GGCTGTGAAGACAGAATTGA+TGG + chr7.3:34168166-34168185 None:intergenic 45.0%
GTCATGCCTAGAGTTTAGGA+AGG - chr7.3:34168514-34168533 MS.gene42146:intron 45.0%
TATGTGGGATCAACGTGGAA+GGG - chr7.3:34170490-34170509 MS.gene42146:intron 45.0%
TCACCACTTGGATCACAAGA+TGG - chr7.3:34169921-34169940 MS.gene42146:intron 45.0%
TGATAGATGGAGATGCATCC+TGG - chr7.3:34169574-34169593 MS.gene42146:intron 45.0%
TGGACTCTTGTTCAGCTTCT+TGG + chr7.3:34169988-34170007 None:intergenic 45.0%
TGTCTTCACAGCCATTGTTG+AGG - chr7.3:34168173-34168192 MS.gene42146:intron 45.0%
TGTTGTGATCTTTGGTACCG+CGG - chr7.3:34169696-34169715 MS.gene42146:CDS 45.0%
TTATGTGGGATCAACGTGGA+AGG - chr7.3:34170489-34170508 MS.gene42146:intron 45.0%
! CTGCTATTGGATTAGGCACA+TGG - chr7.3:34168124-34168143 MS.gene42146:CDS 45.0%
! TCCTAAAGCAGGAGAAGTGT+CGG - chr7.3:34169245-34169264 MS.gene42146:intron 45.0%
! TGTGAATTTTGTGTGCAGGC+TGG - chr7.3:34168297-34168316 MS.gene42146:intron 45.0%
!! AGAAGTGTCGGAGTTTGACA+TGG - chr7.3:34169257-34169276 MS.gene42146:intron 45.0%
!! CGTCCGTTGACTTCTACTAT+TGG - chr7.3:34170284-34170303 MS.gene42146:intron 45.0%
!! TTATCGGATTAAGGGTGTCC+TGG + chr7.3:34168748-34168767 None:intergenic 45.0%
!!! GAACTATTTTGGCCGATGCT+TGG + chr7.3:34170215-34170234 None:intergenic 45.0%
ATGTCGGCACGGACACTTAT+CGG + chr7.3:34168764-34168783 None:intergenic 50.0%
ATTGCTGCTGCTGCGTTATG+TGG - chr7.3:34169761-34169780 MS.gene42146:intron 50.0%
CCACCATCTTGTGATCCAAG+TGG + chr7.3:34169927-34169946 None:intergenic 50.0%
CCACTTGGATCACAAGATGG+TGG - chr7.3:34169924-34169943 MS.gene42146:intron 50.0%
CTATGACGTGGCACGTTAAC+TGG - chr7.3:34170309-34170328 MS.gene42146:intron 50.0%
CTCGAGGCTTGCAAGAAGAA+TGG - chr7.3:34169616-34169635 MS.gene42146:intron 50.0%
CTTCAATCTGCCATGCAAGC+AGG - chr7.3:34168857-34168876 MS.gene42146:intron 50.0%
GAATGACACTTGTCCCTCTC+TGG + chr7.3:34170037-34170056 None:intergenic 50.0%
GTGTCGGAGTTTGACATGGA+AGG - chr7.3:34169261-34169280 MS.gene42146:intron 50.0%
TCCGACACTTCTCCTGCTTT+AGG + chr7.3:34169249-34169268 None:intergenic 50.0%
TGCAATTCTCTGTGGTACCG+CGG + chr7.3:34169716-34169735 None:intergenic 50.0%
! AGTCAACGGACGGACCATTT+TGG + chr7.3:34170276-34170295 None:intergenic 50.0%
! GACACTTCTCCTGCTTTAGG+AGG + chr7.3:34169246-34169265 None:intergenic 50.0%
!! AGGTCAGGTGTTGGTGAAGT+GGG - chr7.3:34170007-34170026 MS.gene42146:intron 50.0%
!! CACTGACTTGACCCCTGAAA+GGG - chr7.3:34169027-34169046 MS.gene42146:intron 50.0%
!! GATTAAGGGTGTCCTGGTGT+CGG + chr7.3:34168742-34168761 None:intergenic 50.0%
!! TGAAGGGTATTGTTGAGGGC+AGG + chr7.3:34169058-34169077 None:intergenic 50.0%
AGATGGAGATGCATCCTGGG+TGG - chr7.3:34169578-34169597 MS.gene42146:intron 55.0%
AGGGCAGGTCTTACCCTTTC+AGG + chr7.3:34169043-34169062 None:intergenic 55.0%
ATCTGCCATGCAAGCAGGAG+TGG - chr7.3:34168862-34168881 MS.gene42146:intron 55.0%
ATGCAGAGGAGAGTCCTCGA+CGG - chr7.3:34170596-34170615 MS.gene42146:CDS 55.0%
CAAAGAGGTCTTCACCGTCG+AGG + chr7.3:34170613-34170632 None:intergenic 55.0%
CAAGAGTCCAGGTCAGGTGT+TGG - chr7.3:34169998-34170017 MS.gene42146:intron 55.0%
CACTTCACCAACACCTGACC+TGG + chr7.3:34170008-34170027 None:intergenic 55.0%
CCATGCAAGCAGGAGTGGAA+AGG - chr7.3:34168867-34168886 MS.gene42146:intron 55.0%
CCTTTCCACTCCTGCTTGCA+TGG + chr7.3:34168870-34168889 None:intergenic 55.0%
GACACTTGTCCCTCTCTGGA+TGG + chr7.3:34170033-34170052 None:intergenic 55.0%
GCAAGCAGGAGTGGAAAGGA+AGG - chr7.3:34168871-34168890 MS.gene42146:intron 55.0%
GCTGAACAAGAGTCCAGGTC+AGG - chr7.3:34169992-34170011 MS.gene42146:intron 55.0%
GGCAGGTCTTACCCTTTCAG+GGG + chr7.3:34169041-34169060 None:intergenic 55.0%
GGGCAGGTCTTACCCTTTCA+GGG + chr7.3:34169042-34169061 None:intergenic 55.0%
GTCAGTGTCTGTGTCGTGTC+TGG + chr7.3:34168633-34168652 None:intergenic 55.0%
TGAAGTGGGCCATCCAGAGA+GGG - chr7.3:34170021-34170040 MS.gene42146:intron 55.0%
!! CAGGTCAGGTGTTGGTGAAG+TGG - chr7.3:34170006-34170025 MS.gene42146:intron 55.0%
!! GCACTGACTTGACCCCTGAA+AGG - chr7.3:34169026-34169045 MS.gene42146:intron 55.0%
ACCAACGCTTGTCCGACACC+AGG - chr7.3:34168727-34168746 MS.gene42146:CDS 60.0%
GCAAGCAGGCCTCCTAAAGC+AGG - chr7.3:34169234-34169253 MS.gene42146:intron 60.0%
GTGAAGTGGGCCATCCAGAG+AGG - chr7.3:34170020-34170039 MS.gene42146:intron 60.0%
! TCCTGGTGTCGGACAAGCGT+TGG + chr7.3:34168731-34168750 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 34168054 34170691 34168054 ID=MS.gene42146
chr7.3 mRNA 34168054 34170691 34168054 ID=MS.gene42146.t1;Parent=MS.gene42146
chr7.3 exon 34170551 34170691 34170551 ID=MS.gene42146.t1.exon1;Parent=MS.gene42146.t1
chr7.3 CDS 34170551 34170691 34170551 ID=cds.MS.gene42146.t1;Parent=MS.gene42146.t1
chr7.3 exon 34170380 34170430 34170380 ID=MS.gene42146.t1.exon2;Parent=MS.gene42146.t1
chr7.3 CDS 34170380 34170430 34170380 ID=cds.MS.gene42146.t1;Parent=MS.gene42146.t1
chr7.3 exon 34169827 34169900 34169827 ID=MS.gene42146.t1.exon3;Parent=MS.gene42146.t1
chr7.3 CDS 34169827 34169900 34169827 ID=cds.MS.gene42146.t1;Parent=MS.gene42146.t1
chr7.3 exon 34169634 34169721 34169634 ID=MS.gene42146.t1.exon4;Parent=MS.gene42146.t1
chr7.3 CDS 34169634 34169721 34169634 ID=cds.MS.gene42146.t1;Parent=MS.gene42146.t1
chr7.3 exon 34169335 34169541 34169335 ID=MS.gene42146.t1.exon5;Parent=MS.gene42146.t1
chr7.3 CDS 34169335 34169541 34169335 ID=cds.MS.gene42146.t1;Parent=MS.gene42146.t1
chr7.3 exon 34169094 34169165 34169094 ID=MS.gene42146.t1.exon6;Parent=MS.gene42146.t1
chr7.3 CDS 34169094 34169165 34169094 ID=cds.MS.gene42146.t1;Parent=MS.gene42146.t1
chr7.3 exon 34168588 34168830 34168588 ID=MS.gene42146.t1.exon7;Parent=MS.gene42146.t1
chr7.3 CDS 34168588 34168830 34168588 ID=cds.MS.gene42146.t1;Parent=MS.gene42146.t1
chr7.3 exon 34168054 34168143 34168054 ID=MS.gene42146.t1.exon8;Parent=MS.gene42146.t1
chr7.3 CDS 34168054 34168143 34168054 ID=cds.MS.gene42146.t1;Parent=MS.gene42146.t1
Gene Sequence

>MS.gene42146

ATGGCACAAACAGTTAAGCCACATGAACCAAAGACAAAGTCATTTGATCTGTTGAGTGGACATAGCATACCTGCTATTGGATTAGGCACATGGAAATCTGGTTCACAAGCCATCAATTCTGTCTTCACAGCCATTGTTGAGGTAACTAATGTAACATATTGAGTTTGAGATCAATTTTTGAGATCATTATATTATTCATTGATGAATGTTCTAAAGTTTTTGTAGGAAAAAAAAAATGAAAATTGTGAATTTTGTGTGCAGGCTGGTTATAGACACATTGACACTGCTGCTCAATATGGAGTTCAAGAAGAGGTATATACATCATATGCTTTTTGTTTCTTACAAGTTTTAATTTGTTGATTCTATATATAAATTCAAAAAAAAATATGAATTAATACATTAATACAATATTATAGTATGTATTACCCATTAGTTTCATATAAAGAGGTAGATGAGGATTGTCATGCCTAGAGTTTAGGAAGGATTAATCAAAGTATATATGAGAGTGAACTACTCTCTAATTAATGCATACAAGCAAATTTTTAGTACTCGTTAATAATTAATAACTATGAAGCACCAGACACGACACAGACACTGACACGCCGACACGAACAATAATTTGAGAAAATAACATATTTCAGTGTAATCATAGGTGTTGATGTCTGTGTCAAATACCAACGCTTGTCCGACACCAGGACACCCTTAATCCGATAAGTGTCCGTGCCGACATAATCTATTGATTAATTTATTTATATTATTATATAACACTTCTTACTTGTCCCACTAAATAGGTTGGACATGCACTTCAATCTGCCATGCAAGCAGGAGTGGAAAGGAAGGATCTATTTATCACCTCCAAACTATGGTAATAATGTAACATAATAGATATATGTTTATACCTATACTCTTTAGGTCTTTATGTTGAAATAATTGAATTTGTTGGTGTGAAATTTTATGGCTGCTATGCTAGGTGCACTGACTTGACCCCTGAAAGGGTAAGACCTGCCCTCAACAATACCCTTCAAGAACTCCAACTTGACTACCTTGATCTTTACTTGGTAATTAATTAATTAATTAACAACCTTTCAATTTATCTTTAAATCCATCTTTCTCTTTTCTACTTCTTTCATTCATGAGGAATGTGATGCAGATTCACTGGCCATTTCAATTGAAAGATGGGGCAAGCAGGCCTCCTAAAGCAGGAGAAGTGTCGGAGTTTGACATGGAAGGAGTTTGGAGAGAAATGGAGAAGCTTGTCAAGGAAAATCTTGTTAGAGACATTGGAATATGCAACTTCACTCTTACTAAACTTGACAGGCTAGTCAATATTGCTCAAGTTATGCCTTCTGTATGCCAGGTAAAATTATGTTCATTCTATAAAGATTCATTTAATGTCTTAAGGTCTATGGTATTGCTTGGATAAACAACTTCATTAAACATTTATAGCATAAGCGTTTATCATATACGTACTTATGCATAAGCTATATTTATAATTTGTGTATATGGTGTTTTGTGAATTGTGATAGATGGAGATGCATCCTGGGTGGAGAAATGATAAGATGCTCGAGGCTTGCAAGAAGAATGGCATCCATGTCACGGTAATTTACATAAAGGTTTTAAATAAAGGGCACGATAACAGTTGTGTTGTGATCTTTGGTACCGCGGTACCACAGAGAATTGCAGTCAAATGAAATTGATGCGGCTTCAATTGCTGCTGCTGCGTTATGTGGCTCAGATCGCGTACACAAACCTTTGTTTAAAACCTTGATTACTACACTCCTAATTTAATTTTTCTTCATTTGTTTATATGGTTTTGTGATTGAATTTATTGATTGGAATTGTCAAAATTGCTGCTATCTAGGCCTATTCACCACTTGGATCACAAGATGGTGGGAGAGATCTCATCCATGATCAAACGGTTGATAGGATAGCCAAGAAGCTGAACAAGAGTCCAGGTCAGGTGTTGGTGAAGTGGGCCATCCAGAGAGGGACAAGTGTCATTCCCAGATCAACCAATCCAAATAGGATCAAAGAGAATGTGGTTGTCTTCAATTGGGAACTTCCAGATAATGACTTCAACAAACTTAGCAAAATACTAGATCAGGTAGGTTAATTGGAATACATTAGTCCTTTAGAAAGAGTGAATAGGAAAATTGGTCCAAGCATCGGCCAAAATAGTTCCGAATTGATATATAGATCTTTAAAATTGTTAATGTCATCCAAAATGGTCCGTCCGTTGACTTCTACTATTGGAGCTATGACGTGGCACGTTAACTGGATATGCTGCATTGCATGTTGATCTCACATTAACTTCATCCCACTAGTGCCTATGAAATTCAGGTCGTCTTACGGATAAATTTGTCAGTAATTATTGGTAAATCAGTCCATAAGAAACCTAAACTTCATAGACACATCAATTTGTAGTGCGATGACATTTATGTGGGATCAACGTGGAAGGGTCATATATTTAATAAACGTGTCACATCATACTAATTGGAACTCATTACTCGGGTGAATGACCACTTTCATTGCTTATTGATACATGCAGAGGAGAGTCCTCGACGGTGAAGACCTCTTTGTGAACAAGAGTGAAGGGCCATTCAAGAGTGTAGAAGATATCTGGGACCATGAAGATTAG

Protein sequence

>MS.gene42146.t1

MAQTVKPHEPKTKSFDLLSGHSIPAIGLGTWKSGSQAINSVFTAIVEAGYRHIDTAAQYGVQEEVGHALQSAMQAGVERKDLFITSKLWCTDLTPERVRPALNNTLQELQLDYLDLYLIHWPFQLKDGASRPPKAGEVSEFDMEGVWREMEKLVKENLVRDIGICNFTLTKLDRLVNIAQVMPSVCQMEMHPGWRNDKMLEACKKNGIHVTAYSPLGSQDGGRDLIHDQTVDRIAKKLNKSPGQVLVKWAIQRGTSVIPRSTNPNRIKENVVVFNWELPDNDFNKLSKILDQRRVLDGEDLFVNKSEGPFKSVEDIWDHED