AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50700.t1 MTR_4g072060 98.997 299 3 0 1 299 11 309 0.0 619
MS.gene50700.t1 MTR_8g070095 42.545 275 144 5 1 271 16 280 8.03e-74 229
MS.gene50700.t1 MTR_7g063580 42.336 274 143 4 1 272 56 316 2.61e-67 214
MS.gene50700.t1 MTR_8g070115 39.781 274 151 4 1 272 16 277 5.08e-66 209
MS.gene50700.t1 MTR_0374s0050 37.248 298 171 7 1 292 20 307 9.91e-64 203
MS.gene50700.t1 MTR_4g036845 38.768 276 157 4 1 274 14 279 2.60e-63 202
MS.gene50700.t1 MTR_4g072360 38.194 288 162 6 1 282 17 294 2.86e-63 202
MS.gene50700.t1 MTR_6g073110 40.636 283 152 6 1 277 17 289 6.02e-63 201
MS.gene50700.t1 MTR_4g072320 39.502 281 154 6 1 278 17 284 9.07e-63 201
MS.gene50700.t1 MTR_4g072350 38.194 288 162 6 1 282 17 294 1.80e-62 200
MS.gene50700.t1 MTR_4g021350 40.146 274 148 5 1 272 16 275 7.55e-61 195
MS.gene50700.t1 MTR_4g021350 40.146 274 148 5 1 272 16 275 2.85e-60 194
MS.gene50700.t1 MTR_4g021450 40.214 281 141 4 1 278 17 273 3.30e-60 194
MS.gene50700.t1 MTR_4g021410 39.858 281 142 4 1 278 17 273 5.14e-59 191
MS.gene50700.t1 MTR_3g083130 36.304 303 177 6 1 298 21 312 4.21e-58 189
MS.gene50700.t1 MTR_5g097910 39.073 302 169 6 1 298 20 310 2.46e-56 184
MS.gene50700.t1 MTR_5g097940 39.073 302 169 6 1 298 20 310 2.46e-56 184
MS.gene50700.t1 MTR_5g097900 39.073 302 169 6 1 298 20 310 2.89e-56 184
MS.gene50700.t1 MTR_4g021410 40.698 258 126 4 24 278 3 236 1.03e-53 176
MS.gene50700.t1 MTR_7g070500 37.631 287 162 6 1 285 23 294 1.17e-49 167
MS.gene50700.t1 MTR_7g070500 38.909 275 151 6 1 273 23 282 1.63e-49 166
MS.gene50700.t1 MTR_4g021450 38.009 221 110 4 61 278 1 197 3.92e-36 129
MS.gene50700.t1 MTR_4g021410 38.009 221 110 4 61 278 1 197 8.96e-36 129
MS.gene50700.t1 MTR_4g021450 37.821 156 88 2 124 278 7 154 6.37e-32 117
MS.gene50700.t1 MTR_6g086545 88.000 50 6 0 48 97 36 85 2.62e-24 94.7
MS.gene50700.t1 MTR_7g114990 27.365 296 148 10 19 278 51 315 9.52e-18 82.8
MS.gene50700.t1 MTR_6g072650 34.426 122 55 1 161 282 14 110 8.41e-16 73.2
MS.gene50700.t1 MTR_7g114980 26.389 288 151 8 27 278 57 319 5.56e-15 74.7
MS.gene50700.t1 MTR_6g072710 33.333 108 69 1 176 283 2 106 1.06e-14 69.3
MS.gene50700.t1 MTR_1g102750 25.260 289 150 9 27 278 51 310 4.23e-13 69.3
MS.gene50700.t1 MTR_7g021680 26.027 292 150 8 19 274 42 303 5.63e-13 68.9
MS.gene50700.t1 MTR_7g021820 26.027 292 150 8 19 274 42 303 5.63e-13 68.9
MS.gene50700.t1 MTR_7g115010 25.540 278 147 7 27 278 55 298 1.66e-12 67.4
MS.gene50700.t1 MTR_3g092140 23.158 285 165 9 23 274 79 342 2.31e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50700.t1 AT2G21250 85.953 299 42 0 1 299 11 309 0.0 551
MS.gene50700.t1 AT2G21260 84.615 299 46 0 1 299 11 309 0.0 542
MS.gene50700.t1 AT2G21260 83.544 237 39 0 63 299 5 241 3.86e-153 428
MS.gene50700.t1 AT2G21250 87.444 223 28 0 1 223 11 233 4.54e-150 420
MS.gene50700.t1 AT2G37790 41.667 276 146 6 1 274 16 278 8.64e-73 227
MS.gene50700.t1 AT2G37770 41.697 271 144 5 1 269 16 274 2.00e-72 226
MS.gene50700.t1 AT2G37760 40.146 274 146 4 1 272 16 273 1.58e-67 213
MS.gene50700.t1 AT2G37760 40.146 274 146 4 1 272 16 273 1.58e-67 213
MS.gene50700.t1 AT2G37760 40.146 274 146 4 1 272 16 273 1.72e-67 212
MS.gene50700.t1 AT2G37760 40.146 274 146 4 1 272 16 273 7.31e-67 211
MS.gene50700.t1 AT2G37760 40.146 274 146 4 1 272 16 273 7.31e-67 211
MS.gene50700.t1 AT3G53880 39.051 274 153 6 1 272 16 277 3.56e-65 207
MS.gene50700.t1 AT3G53880 39.051 274 153 6 1 272 16 277 4.15e-65 207
MS.gene50700.t1 AT5G01670 37.847 288 162 6 1 286 24 296 1.57e-64 206
MS.gene50700.t1 AT1G59960 37.457 291 166 6 1 285 21 301 1.75e-63 203
MS.gene50700.t1 AT5G62420 35.689 283 171 4 1 281 14 287 4.23e-62 199
MS.gene50700.t1 AT5G01670 34.603 315 162 6 1 286 24 323 7.94e-60 194
MS.gene50700.t1 AT1G59950 38.028 284 160 6 1 278 15 288 2.84e-53 177
MS.gene50700.t1 AT2G37760 38.197 233 130 3 42 272 7 227 8.23e-52 171
MS.gene50700.t1 AT2G37760 38.197 233 130 3 42 272 7 227 8.23e-52 171
MS.gene50700.t1 AT2G37770 42.564 195 101 3 1 193 16 201 8.16e-51 169
MS.gene50700.t1 AT5G53580 25.260 289 152 11 23 273 80 342 1.99e-13 70.5
MS.gene50700.t1 AT1G60680 25.890 309 170 11 7 282 34 316 8.99e-13 68.2

Find 64 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTTCAGTTAGATTATC+TGG 0.178661 4.3:-33733575 MS.gene50700:CDS
CAATCATTGGACTTGGAGTT+TGG 0.270385 4.3:-33734177 MS.gene50700:CDS
CTAATCAACCAGCCAAGTTT+TGG 0.301887 4.3:-33731489 MS.gene50700:CDS
CGGCCCAGATTTCTCTTCGT+TGG 0.313912 4.3:-33731648 MS.gene50700:CDS
CCAGGTAGTTTCCAGGGATA+TGG 0.324257 4.3:+33732710 None:intergenic
GGCCCAGATTTCTCTTCGTT+GGG 0.324480 4.3:-33731647 MS.gene50700:CDS
AGGCCTTGTTTCATCGGGCT+TGG 0.352439 4.3:-33732676 MS.gene50700:CDS
AGAGACTCACGCTGGAAGTA+TGG 0.367962 4.3:+33731929 None:intergenic
CATTCCTAAAACATCAAAAC+TGG 0.371742 4.3:-33731602 MS.gene50700:CDS
TGGTACTACTGATAGTGCTT+TGG 0.377006 4.3:-33732763 MS.gene50700:CDS
ATTTACAGCAGGCTTTATCT+TGG 0.383165 4.3:+33731967 None:intergenic
GGTACTACTGATAGTGCTTT+GGG 0.398671 4.3:-33732762 MS.gene50700:CDS
ATCATCAATTCCATCAAAAT+CGG 0.409845 4.3:-33734124 MS.gene50700:CDS
TCGCATGCCAGGTAGTTTCC+AGG 0.413644 4.3:+33732703 None:intergenic
AAGATCTATGCCCCAAAACT+TGG 0.416833 4.3:+33731477 None:intergenic
CAGCTTTGGAATTCTGATCA+TGG 0.427560 4.3:-33733631 MS.gene50700:CDS
GATGGAAGGCCTTGTTTCAT+CGG 0.446325 4.3:-33732682 MS.gene50700:CDS
ATGGAAGGCCTTGTTTCATC+GGG 0.446988 4.3:-33732681 MS.gene50700:CDS
TGGTTCGCAGCATAGGAATC+AGG 0.448672 4.3:-33732656 MS.gene50700:intron
GTTTGGTACAGAGTCATGTT+TGG 0.456307 4.3:-33731828 MS.gene50700:CDS
CAGCACCTCCAAGTGGAGTG+TGG 0.464776 4.3:+33731867 None:intergenic
GAGATTGAAAGAGAACTTCC+AGG 0.476154 4.3:-33731578 MS.gene50700:CDS
AAGATGCCAATCATTGGACT+TGG 0.484856 4.3:-33734184 MS.gene50700:CDS
AAGGCCTTCCATCGCATGCC+AGG 0.485617 4.3:+33732692 None:intergenic
GATAGTGCTTTGGGTGAAGA+TGG 0.488339 4.3:-33732753 MS.gene50700:CDS
GGATTCAAGATGCCAATCAT+TGG 0.488816 4.3:-33734190 None:intergenic
CAAACTCCAAGTCCAATGAT+TGG 0.497148 4.3:+33734178 None:intergenic
TCGGGCTTGGTTCGCAGCAT+AGG 0.504308 4.3:-33732663 MS.gene50700:CDS
AGCACCTCCAAGTGGAGTGT+GGG 0.505998 4.3:+33731868 None:intergenic
GCAGCAAACAAAGAATGGTT+TGG 0.506549 4.3:-33731845 MS.gene50700:CDS
CCAGTGTGCCTAGTGGCTAC+AGG 0.509750 4.3:+33733532 None:intergenic
TTTGGGTGAAGATGGGGTGC+TGG 0.520967 4.3:-33732745 MS.gene50700:CDS
CTAATCAAGTTGTACCTTGG+TGG 0.525690 4.3:+33733901 None:intergenic
CTTGGAGTTTGGCGCATGGA+AGG 0.527245 4.3:-33734166 MS.gene50700:CDS
GCCCAGATTTCTCTTCGTTG+GGG 0.533029 4.3:-33731646 MS.gene50700:CDS
GTTTCAATCTGATTTACAGC+AGG 0.535497 4.3:+33731956 None:intergenic
CCATATCCCTGGAAACTACC+TGG 0.536079 4.3:-33732710 MS.gene50700:CDS
AGCTCATCAACGGTATGGAC+AGG 0.538810 4.3:-33731522 MS.gene50700:CDS
TTCACTTTCCTGTAGCCACT+AGG 0.540134 4.3:-33733540 MS.gene50700:CDS
ATAGTGCTTTGGGTGAAGAT+GGG 0.542552 4.3:-33732752 MS.gene50700:CDS
GTGCTGCAGCAAACAAAGAA+TGG 0.545070 4.3:-33731850 MS.gene50700:CDS
TGACACTGGACTTGTGAAGA+GGG 0.546697 4.3:-33733939 MS.gene50700:CDS
CCCAGATTTCTCTTCGTTGG+GGG 0.546879 4.3:-33731645 MS.gene50700:CDS
TGAGTTGTCTAAAGAGGACA+TGG 0.548008 4.3:-33731545 MS.gene50700:CDS
TCTATGCCCCAAAACTTGGC+TGG 0.554874 4.3:+33731481 None:intergenic
GTAACAGCCCACACTCCACT+TGG 0.555247 4.3:-33731875 MS.gene50700:CDS
CATAGATACAACCATATCCC+TGG 0.561415 4.3:-33732721 MS.gene50700:CDS
CATGGAGCTCATCAACGGTA+TGG 0.562792 4.3:-33731527 MS.gene50700:CDS
ACTACCTGGCATGCGATGGA+AGG 0.563810 4.3:-33732696 MS.gene50700:CDS
CGCATGCCAGGTAGTTTCCA+GGG 0.567596 4.3:+33732704 None:intergenic
TTGACACTGGACTTGTGAAG+AGG 0.573004 4.3:-33733940 MS.gene50700:CDS
GGAAACTACCTGGCATGCGA+TGG 0.573428 4.3:-33732700 MS.gene50700:CDS
ACAGCCCACACTCCACTTGG+AGG 0.575322 4.3:-33731872 MS.gene50700:CDS
TTTGCTGCAGCACCTCCAAG+TGG 0.593943 4.3:+33731860 None:intergenic
CCTGTAGCCACTAGGCACAC+TGG 0.596234 4.3:-33733532 MS.gene50700:intron
TGATCATGGACACGTTGTTG+AGG 0.599170 4.3:-33733617 MS.gene50700:CDS
ACAACTCAAAATCAAATACC+TGG 0.601173 4.3:+33731560 None:intergenic
GAACCAAGCCCGATGAAACA+AGG 0.610945 4.3:+33732673 None:intergenic
TGGACTTGGAGTTTGGCGCA+TGG 0.614053 4.3:-33734170 MS.gene50700:CDS
TAGTGCTTTGGGTGAAGATG+GGG 0.627757 4.3:-33732751 MS.gene50700:CDS
GAGGACATGGAGCTCATCAA+CGG 0.648344 4.3:-33731532 MS.gene50700:CDS
CACTGGACTTGTGAAGAGGG+AGG 0.668718 4.3:-33733936 MS.gene50700:CDS
ATTTGACTAGAGACTCACGC+TGG 0.717354 4.3:+33731921 None:intergenic
AAACATACCAGTGTGCCTAG+TGG 0.724092 4.3:+33733525 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAAATTATACTTAAGAT+GGG + chr4.3:33733541-33733560 None:intergenic 15.0%
!! ATATATAAATGCTAAAACAT+TGG - chr4.3:33732479-33732498 MS.gene50700:intron 15.0%
!! ATTGACATCTAATAATAAAA+TGG - chr4.3:33732526-33732545 MS.gene50700:intron 15.0%
!! CTATTTAATGAAATTACAAT+CGG - chr4.3:33733601-33733620 MS.gene50700:CDS 15.0%
!!! ATGAATTTTACCTAATAATA+AGG - chr4.3:33733098-33733117 MS.gene50700:intron 15.0%
!!! ATTTAGGATAAAATCAATTA+TGG + chr4.3:33731937-33731956 None:intergenic 15.0%
!! ACTTTGATATTATGAGTTAA+TGG - chr4.3:33731972-33731991 MS.gene50700:CDS 20.0%
!! AGCCAAAAAAAATGTTATAA+TGG - chr4.3:33732403-33732422 MS.gene50700:intron 20.0%
!! ATTAGATACATGTGTTAAAT+AGG - chr4.3:33731766-33731785 MS.gene50700:intron 20.0%
!! CATACAAATTATACTTAAGA+TGG + chr4.3:33733542-33733561 None:intergenic 20.0%
!! CCAAAAAAAATGTTATAATG+GGG - chr4.3:33732405-33732424 MS.gene50700:intron 20.0%
!! GCCAAAAAAAATGTTATAAT+GGG - chr4.3:33732404-33732423 MS.gene50700:intron 20.0%
!! TAAGCATTATTATTCCATTA+GGG + chr4.3:33733462-33733481 None:intergenic 20.0%
!! TAGAAATTGCTAATCTATTT+AGG + chr4.3:33731953-33731972 None:intergenic 20.0%
!! TATTATGAGTTAATGGTATT+TGG - chr4.3:33731979-33731998 MS.gene50700:CDS 20.0%
!! TGGTTATAAGATAAGATAAT+AGG + chr4.3:33733902-33733921 None:intergenic 20.0%
!! TTCTATACATTCTATTTACT+TGG - chr4.3:33732304-33732323 MS.gene50700:intron 20.0%
!! TTGACTATTTCCTTATTATT+AGG + chr4.3:33733111-33733130 None:intergenic 20.0%
!! TTTGTCTAATCTATTGAAAA+GGG - chr4.3:33733500-33733519 MS.gene50700:intron 20.0%
!!! ATTTAATTTGTATACATCGA+CGG + chr4.3:33731804-33731823 None:intergenic 20.0%
!!! CAAAGTATTGATATACTAAT+TGG - chr4.3:33732214-33732233 MS.gene50700:intron 20.0%
!!! CATCTTAAGTATAATTTGTA+TGG - chr4.3:33733540-33733559 MS.gene50700:CDS 20.0%
!!! TTTTTTTACTCCTTCAAATT+TGG - chr4.3:33731587-33731606 MS.gene50700:CDS 20.0%
! AAACATAGAAGTAGTTAACA+AGG - chr4.3:33732564-33732583 MS.gene50700:intron 25.0%
! AAATTCACAGTTATCTATAG+AGG + chr4.3:33732797-33732816 None:intergenic 25.0%
! AGATTGAAATCCAAATTTGA+AGG + chr4.3:33731600-33731619 None:intergenic 25.0%
! ATCATCAATTCCATCAAAAT+CGG - chr4.3:33731525-33731544 MS.gene50700:CDS 25.0%
! CATAAACTATAGTCGTAAAA+AGG + chr4.3:33733076-33733095 None:intergenic 25.0%
! CATCAAAACTAAAAAGTCAA+GGG + chr4.3:33732164-33732183 None:intergenic 25.0%
! CATCTAATAATAAAATGGCA+TGG - chr4.3:33732531-33732550 MS.gene50700:intron 25.0%
! CCTAATTCTGATTATAAAGA+AGG - chr4.3:33731824-33731843 MS.gene50700:CDS 25.0%
! CCTTCTTTATAATCAGAATT+AGG + chr4.3:33731827-33731846 None:intergenic 25.0%
! CTAAGCATTATTATTCCATT+AGG + chr4.3:33733463-33733482 None:intergenic 25.0%
! GTTCATCATGATATTACTAA+CGG - chr4.3:33733315-33733334 MS.gene50700:intron 25.0%
! GTTTAACCATAGTTATCAAT+AGG - chr4.3:33732369-33732388 MS.gene50700:intron 25.0%
! GTTTGTCTAATCTATTGAAA+AGG - chr4.3:33733499-33733518 MS.gene50700:intron 25.0%
! TCATCAAAACTAAAAAGTCA+AGG + chr4.3:33732165-33732184 None:intergenic 25.0%
! TGAAAAATACAAAAAGACTG+CGG - chr4.3:33733981-33734000 MS.gene50700:CDS 25.0%
! TTGTCTAATCTATTGAAAAG+GGG - chr4.3:33733501-33733520 MS.gene50700:intron 25.0%
!!! ATGCACGTTTATGTTATTTT+GGG - chr4.3:33733243-33733262 MS.gene50700:intron 25.0%
!!! CCCCATTATAACATTTTTTT+TGG + chr4.3:33732408-33732427 None:intergenic 25.0%
!!! TACTGATTTTGGATAGATAA+TGG + chr4.3:33733922-33733941 None:intergenic 25.0%
!!! TTTTGATGGAATTGATGATT+AGG + chr4.3:33731524-33731543 None:intergenic 25.0%
AACTAATGACCAAACTTGAT+AGG - chr4.3:33733149-33733168 MS.gene50700:intron 30.0%
AATAGGCTACTAATATGTGT+TGG + chr4.3:33733885-33733904 None:intergenic 30.0%
ACAACTCAAAATCAAATACC+TGG + chr4.3:33734092-33734111 None:intergenic 30.0%
AGAAAAAGAGATGTTCAGAT+GGG + chr4.3:33732740-33732759 None:intergenic 30.0%
CATTATTATTCCATTAGGGT+AGG + chr4.3:33733458-33733477 None:intergenic 30.0%
CATTCCTAAAACATCAAAAC+TGG - chr4.3:33734047-33734066 MS.gene50700:intron 30.0%
GTAATATGAAACATGTGACA+AGG + chr4.3:33733412-33733431 None:intergenic 30.0%
GTTAACAAGGAAACAAAAGA+AGG - chr4.3:33732577-33732596 MS.gene50700:intron 30.0%
TAAAGAAGGAAACATCAACA+AGG - chr4.3:33731838-33731857 MS.gene50700:CDS 30.0%
TAGAAAAAGAGATGTTCAGA+TGG + chr4.3:33732741-33732760 None:intergenic 30.0%
TGTAAAGAGATGTTTCAGAT+GGG + chr4.3:33732635-33732654 None:intergenic 30.0%
TTATCTATAGAGGCCAATAA+TGG + chr4.3:33732787-33732806 None:intergenic 30.0%
TTGTAAAGAGATGTTTCAGA+TGG + chr4.3:33732636-33732655 None:intergenic 30.0%
TTTGAATCTGATTTCAGCTT+TGG - chr4.3:33732004-33732023 MS.gene50700:CDS 30.0%
! AAAATGTTATAATGGGGTAG+TGG - chr4.3:33732411-33732430 MS.gene50700:intron 30.0%
! AATGCTTAGTTGCTATTGAT+GGG - chr4.3:33733474-33733493 MS.gene50700:intron 30.0%
! ATCTGAAACATCTCTTTACA+AGG - chr4.3:33732635-33732654 MS.gene50700:intron 30.0%
! TAATGCTTAGTTGCTATTGA+TGG - chr4.3:33733473-33733492 MS.gene50700:intron 30.0%
! TATCTAATCAAGTTGTACCT+TGG + chr4.3:33731754-33731773 None:intergenic 30.0%
! TATGTAGAAACTCTTGTTGT+TGG - chr4.3:33732185-33732204 MS.gene50700:intron 30.0%
! TCTGAAACATCTCTTTACAA+GGG - chr4.3:33732636-33732655 MS.gene50700:intron 30.0%
! TTCATGCCTATTGATAACTA+TGG + chr4.3:33732378-33732397 None:intergenic 30.0%
!! CATGCACGTTTATGTTATTT+TGG - chr4.3:33733242-33733261 MS.gene50700:intron 30.0%
!! TTTGGGTTTGGGATATTTTA+AGG - chr4.3:33732347-33732366 MS.gene50700:intron 30.0%
!!! CTAGTCACATTTACTGATTT+TGG + chr4.3:33733933-33733952 None:intergenic 30.0%
!!! TGATTTTGAGTTGTCTAAAG+AGG - chr4.3:33734098-33734117 MS.gene50700:intron 30.0%
AAAAAGAGATGTTCAGATGG+GGG + chr4.3:33732738-33732757 None:intergenic 35.0%
AAACTGCGCCTATCAAAATT+TGG - chr4.3:33732329-33732348 MS.gene50700:intron 35.0%
AACTGCGCCTATCAAAATTT+GGG - chr4.3:33732330-33732349 MS.gene50700:intron 35.0%
AATAACATAAACGTGCATGC+AGG + chr4.3:33733241-33733260 None:intergenic 35.0%
AGTTATCAATAGGCATGAAG+AGG - chr4.3:33732379-33732398 MS.gene50700:intron 35.0%
ATAGTGACAGTCACCATTAT+TGG - chr4.3:33732771-33732790 MS.gene50700:intron 35.0%
ATCAACAAGGCGAACAAATA+TGG - chr4.3:33731851-33731870 MS.gene50700:CDS 35.0%
GAAAAAGAGATGTTCAGATG+GGG + chr4.3:33732739-33732758 None:intergenic 35.0%
GAAGCTTCAGTTAGATTATC+TGG - chr4.3:33732074-33732093 MS.gene50700:intron 35.0%
GTAAAGAGATGTTTCAGATG+GGG + chr4.3:33732634-33732653 None:intergenic 35.0%
GTGCAAATAATAGCAGCTAT+TGG + chr4.3:33732690-33732709 None:intergenic 35.0%
GTTTCAATCTGATTTACAGC+AGG + chr4.3:33733696-33733715 None:intergenic 35.0%
TAAAGAGATGTTTCAGATGG+GGG + chr4.3:33732633-33732652 None:intergenic 35.0%
TACAAAAACGAAGCAGAAGT+TGG - chr4.3:33731666-33731685 MS.gene50700:CDS 35.0%
TATTATTCCATTAGGGTAGG+CGG + chr4.3:33733455-33733474 None:intergenic 35.0%
TATTGAAAAGGGGAATGTGT+TGG - chr4.3:33733511-33733530 MS.gene50700:intron 35.0%
! ATTTACAGCAGGCTTTATCT+TGG + chr4.3:33733685-33733704 None:intergenic 35.0%
! CTTAAAGAAGCTTTTGACAC+TGG - chr4.3:33731696-33731715 MS.gene50700:intron 35.0%
! GCCTATCAAAATTTGGGTTT+GGG - chr4.3:33732336-33732355 MS.gene50700:intron 35.0%
! GTCAAATTTTGTCAGAAGCA+TGG - chr4.3:33733744-33733763 MS.gene50700:intron 35.0%
! TAATCAACCAGCCAAGTTTT+GGG - chr4.3:33734161-33734180 MS.gene50700:CDS 35.0%
! TGGATGATAGCTAGCTATTT+TGG - chr4.3:33731871-33731890 MS.gene50700:CDS 35.0%
!! ATGACGATAACCGATTTTGA+TGG + chr4.3:33731538-33731557 None:intergenic 35.0%
!! CTCTCCAGTTTTGATGTTTT+AGG + chr4.3:33734054-33734073 None:intergenic 35.0%
!! GGATGATAGCTAGCTATTTT+GGG - chr4.3:33731872-33731891 MS.gene50700:CDS 35.0%
!! TCCCAAACCCAAATTTTGAT+AGG + chr4.3:33732340-33732359 None:intergenic 35.0%
!! TCTTTACAAGGGTGTTTGTA+GGG - chr4.3:33732647-33732666 MS.gene50700:intron 35.0%
!!! TATCGTCATTTTGATTGTGC+AGG - chr4.3:33731549-33731568 MS.gene50700:CDS 35.0%
AAGATCTATGCCCCAAAACT+TGG + chr4.3:33734175-33734194 None:intergenic 40.0%
CAAACTCCAAGTCCAATGAT+TGG + chr4.3:33731474-33731493 None:intergenic 40.0%
CAATCATTGGACTTGGAGTT+TGG - chr4.3:33731472-33731491 MS.gene50700:CDS 40.0%
CATAGATACAACCATATCCC+TGG - chr4.3:33732928-33732947 MS.gene50700:intron 40.0%
CCAAACTTGATAGGTTCATG+AGG - chr4.3:33733158-33733177 MS.gene50700:intron 40.0%
CCTCATGAACCTATCAAGTT+TGG + chr4.3:33733161-33733180 None:intergenic 40.0%
GAGATTGAAAGAGAACTTCC+AGG - chr4.3:33734071-33734090 MS.gene50700:intron 40.0%
GCAGCAAACAAAGAATGGTT+TGG - chr4.3:33733804-33733823 MS.gene50700:intron 40.0%
GTTTGGTACAGAGTCATGTT+TGG - chr4.3:33733821-33733840 MS.gene50700:intron 40.0%
TGAGTTGTCTAAAGAGGACA+TGG - chr4.3:33734104-33734123 MS.gene50700:CDS 40.0%
! AATCAACCAGCCAAGTTTTG+GGG - chr4.3:33734162-33734181 MS.gene50700:CDS 40.0%
! AGTGTTGCGACTTTGATTTC+AGG - chr4.3:33733951-33733970 MS.gene50700:CDS 40.0%
! ATAGTGCTTTGGGTGAAGAT+GGG - chr4.3:33732897-33732916 MS.gene50700:intron 40.0%
! ATGACTTCTAGAAGTTGCTC+TGG - chr4.3:33733046-33733065 MS.gene50700:intron 40.0%
! ATGCAAGACATTTTGTGTGC+TGG - chr4.3:33733384-33733403 MS.gene50700:intron 40.0%
! CGCCTATCAAAATTTGGGTT+TGG - chr4.3:33732335-33732354 MS.gene50700:intron 40.0%
! CTAATCAACCAGCCAAGTTT+TGG - chr4.3:33734160-33734179 MS.gene50700:CDS 40.0%
! CTAATCAAGTTGTACCTTGG+TGG + chr4.3:33731751-33731770 None:intergenic 40.0%
! GGATCTTTTCATTACCACCA+AGG - chr4.3:33731734-33731753 MS.gene50700:intron 40.0%
! GGTACTACTGATAGTGCTTT+GGG - chr4.3:33732887-33732906 MS.gene50700:intron 40.0%
! GTGTTGCGACTTTGATTTCA+GGG - chr4.3:33733952-33733971 MS.gene50700:CDS 40.0%
! TGGTACTACTGATAGTGCTT+TGG - chr4.3:33732886-33732905 MS.gene50700:intron 40.0%
!! CAGCTTTGGAATTCTGATCA+TGG - chr4.3:33732018-33732037 MS.gene50700:intron 40.0%
!! CTCTTTACAAGGGTGTTTGT+AGG - chr4.3:33732646-33732665 MS.gene50700:intron 40.0%
AAACATACCAGTGTGCCTAG+TGG + chr4.3:33732127-33732146 None:intergenic 45.0%
AACGTGCATGCAGGAATTGT+AGG + chr4.3:33733232-33733251 None:intergenic 45.0%
ACGTGCATGCAGGAATTGTA+GGG + chr4.3:33733231-33733250 None:intergenic 45.0%
ACTAGGCACACTGGTATGTT+TGG - chr4.3:33732126-33732145 MS.gene50700:intron 45.0%
AGATGTTTCAGATGGGGGAT+GGG + chr4.3:33732628-33732647 None:intergenic 45.0%
ATTTGACTAGAGACTCACGC+TGG + chr4.3:33733731-33733750 None:intergenic 45.0%
CACATTTCTCACACATGCAG+GGG - chr4.3:33732862-33732881 MS.gene50700:intron 45.0%
CCACATTTCTCACACATGCA+GGG - chr4.3:33732861-33732880 MS.gene50700:intron 45.0%
GTGCTGCAGCAAACAAAGAA+TGG - chr4.3:33733799-33733818 MS.gene50700:intron 45.0%
TGACACTGGACTTGTGAAGA+GGG - chr4.3:33731710-33731729 MS.gene50700:intron 45.0%
TGATCATGGACACGTTGTTG+AGG - chr4.3:33732032-33732051 MS.gene50700:intron 45.0%
TTCACTTTCCTGTAGCCACT+AGG - chr4.3:33732109-33732128 MS.gene50700:intron 45.0%
TTGACACTGGACTTGTGAAG+AGG - chr4.3:33731709-33731728 MS.gene50700:intron 45.0%
! GATAGTGCTTTGGGTGAAGA+TGG - chr4.3:33732896-33732915 MS.gene50700:intron 45.0%
! TAGTGCTTTGGGTGAAGATG+GGG - chr4.3:33732898-33732917 MS.gene50700:intron 45.0%
!! ATGGAAGGCCTTGTTTCATC+GGG - chr4.3:33732968-33732987 MS.gene50700:intron 45.0%
!! GATGGAAGGCCTTGTTTCAT+CGG - chr4.3:33732967-33732986 MS.gene50700:intron 45.0%
!! TATAATGGGGTAGTGGAGAG+TGG - chr4.3:33732418-33732437 MS.gene50700:intron 45.0%
AGAGACTCACGCTGGAAGTA+TGG + chr4.3:33733723-33733742 None:intergenic 50.0%
AGAGATGTTCAGATGGGGGA+CGG + chr4.3:33732734-33732753 None:intergenic 50.0%
AGCTCATCAACGGTATGGAC+AGG - chr4.3:33734127-33734146 MS.gene50700:CDS 50.0%
ATGTTTCAGATGGGGGATGG+GGG + chr4.3:33732626-33732645 None:intergenic 50.0%
CAGTTTACCGCCTACCCTAA+TGG - chr4.3:33733445-33733464 MS.gene50700:intron 50.0%
CATGGAGCTCATCAACGGTA+TGG - chr4.3:33734122-33734141 MS.gene50700:CDS 50.0%
CATTAGGGTAGGCGGTAAAC+TGG + chr4.3:33733447-33733466 None:intergenic 50.0%
CCAGGTAGTTTCCAGGGATA+TGG + chr4.3:33732942-33732961 None:intergenic 50.0%
CCATATCCCTGGAAACTACC+TGG - chr4.3:33732939-33732958 MS.gene50700:intron 50.0%
CCCAGATTTCTCTTCGTTGG+GGG - chr4.3:33734004-33734023 MS.gene50700:intron 50.0%
CCCCCAACGAAGAGAAATCT+GGG + chr4.3:33734007-33734026 None:intergenic 50.0%
CCCTGCATGTGTGAGAAATG+TGG + chr4.3:33732864-33732883 None:intergenic 50.0%
CTCTTCGTTGGGGGATTCAA+AGG - chr4.3:33734013-33734032 MS.gene50700:intron 50.0%
GAACCAAGCCCGATGAAACA+AGG + chr4.3:33732979-33732998 None:intergenic 50.0%
GAGATGTTTCAGATGGGGGA+TGG + chr4.3:33732629-33732648 None:intergenic 50.0%
GAGGACATGGAGCTCATCAA+CGG - chr4.3:33734117-33734136 MS.gene50700:CDS 50.0%
GATGTTTCAGATGGGGGATG+GGG + chr4.3:33732627-33732646 None:intergenic 50.0%
GCCACATTTCTCACACATGC+AGG - chr4.3:33732860-33732879 MS.gene50700:intron 50.0%
GCCCAGATTTCTCTTCGTTG+GGG - chr4.3:33734003-33734022 MS.gene50700:intron 50.0%
GGCAATCGCTGGGGAATTTA+AGG + chr4.3:33732712-33732731 None:intergenic 50.0%
GGCCCAGATTTCTCTTCGTT+GGG - chr4.3:33734002-33734021 MS.gene50700:intron 50.0%
TCCCCCAACGAAGAGAAATC+TGG + chr4.3:33734008-33734027 None:intergenic 50.0%
TCTATGCCCCAAAACTTGGC+TGG + chr4.3:33734171-33734190 None:intergenic 50.0%
TGGTTCGCAGCATAGGAATC+AGG - chr4.3:33732993-33733012 MS.gene50700:intron 50.0%
TTTCTCACACATGCAGGGGT+TGG - chr4.3:33732866-33732885 MS.gene50700:intron 50.0%
ACTACCTGGCATGCGATGGA+AGG - chr4.3:33732953-33732972 MS.gene50700:intron 55.0%
AGCACCTCCAAGTGGAGTGT+GGG + chr4.3:33733784-33733803 None:intergenic 55.0%
AGCAGCTATTGGCCACGACA+GGG + chr4.3:33732679-33732698 None:intergenic 55.0%
CACTGGACTTGTGAAGAGGG+AGG - chr4.3:33731713-33731732 MS.gene50700:intron 55.0%
CGCATGCCAGGTAGTTTCCA+GGG + chr4.3:33732948-33732967 None:intergenic 55.0%
CGGCCCAGATTTCTCTTCGT+TGG - chr4.3:33734001-33734020 MS.gene50700:intron 55.0%
CTTGGAGTTTGGCGCATGGA+AGG - chr4.3:33731483-33731502 MS.gene50700:CDS 55.0%
GAGATGTTCAGATGGGGGAC+GGG + chr4.3:33732733-33732752 None:intergenic 55.0%
GGAAACTACCTGGCATGCGA+TGG - chr4.3:33732949-33732968 MS.gene50700:intron 55.0%
GTAACAGCCCACACTCCACT+TGG - chr4.3:33733774-33733793 MS.gene50700:intron 55.0%
TAGCAGCTATTGGCCACGAC+AGG + chr4.3:33732680-33732699 None:intergenic 55.0%
TCGCATGCCAGGTAGTTTCC+AGG + chr4.3:33732949-33732968 None:intergenic 55.0%
TGGACTTGGAGTTTGGCGCA+TGG - chr4.3:33731479-33731498 MS.gene50700:CDS 55.0%
TTTGCTGCAGCACCTCCAAG+TGG + chr4.3:33733792-33733811 None:intergenic 55.0%
TTTGGGTGAAGATGGGGTGC+TGG - chr4.3:33732904-33732923 MS.gene50700:intron 55.0%
!! AGGCCTTGTTTCATCGGGCT+TGG - chr4.3:33732973-33732992 MS.gene50700:intron 55.0%
!! ATGGGGGATGGGGGTACTTT+GGG + chr4.3:33732617-33732636 None:intergenic 55.0%
AAGGCCTTCCATCGCATGCC+AGG + chr4.3:33732960-33732979 None:intergenic 60.0%
ACAGCCCACACTCCACTTGG+AGG - chr4.3:33733777-33733796 MS.gene50700:intron 60.0%
CAGCACCTCCAAGTGGAGTG+TGG + chr4.3:33733785-33733804 None:intergenic 60.0%
CCAGTGTGCCTAGTGGCTAC+AGG + chr4.3:33732120-33732139 None:intergenic 60.0%
CCTGTAGCCACTAGGCACAC+TGG - chr4.3:33732117-33732136 MS.gene50700:intron 60.0%
CTATTGGCCACGACAGGGGA+GGG + chr4.3:33732674-33732693 None:intergenic 60.0%
GCAGCTATTGGCCACGACAG+GGG + chr4.3:33732678-33732697 None:intergenic 60.0%
! TCGGGCTTGGTTCGCAGCAT+AGG - chr4.3:33732986-33733005 MS.gene50700:intron 60.0%
!! GATGGGGGATGGGGGTACTT+TGG + chr4.3:33732618-33732637 None:intergenic 60.0%
!! TGGGGGATGGGGGTACTTTG+GGG + chr4.3:33732616-33732635 None:intergenic 60.0%
ATGGGGGACGGGCAATCGCT+GGG + chr4.3:33732722-33732741 None:intergenic 65.0%
GCTATTGGCCACGACAGGGG+AGG + chr4.3:33732675-33732694 None:intergenic 65.0%
GATGGGGGACGGGCAATCGC+TGG + chr4.3:33732723-33732742 None:intergenic 70.0%
GTAGGGTCCCTCCCCTGTCG+TGG - chr4.3:33732664-33732683 MS.gene50700:CDS 70.0%
TGGGGGACGGGCAATCGCTG+GGG + chr4.3:33732721-33732740 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 33731468 33734203 33731468 ID=MS.gene50700
chr4.3 mRNA 33731468 33734203 33731468 ID=MS.gene50700.t1;Parent=MS.gene50700
chr4.3 exon 33734101 33734203 33734101 ID=MS.gene50700.t1.exon1;Parent=MS.gene50700.t1
chr4.3 CDS 33734101 33734203 33734101 ID=cds.MS.gene50700.t1;Parent=MS.gene50700.t1
chr4.3 exon 33733916 33734010 33733916 ID=MS.gene50700.t1.exon2;Parent=MS.gene50700.t1
chr4.3 CDS 33733916 33734010 33733916 ID=cds.MS.gene50700.t1;Parent=MS.gene50700.t1
chr4.3 exon 33733533 33733650 33733533 ID=MS.gene50700.t1.exon3;Parent=MS.gene50700.t1
chr4.3 CDS 33733533 33733650 33733533 ID=cds.MS.gene50700.t1;Parent=MS.gene50700.t1
chr4.3 exon 33732657 33732789 33732657 ID=MS.gene50700.t1.exon4;Parent=MS.gene50700.t1
chr4.3 CDS 33732657 33732789 33732657 ID=cds.MS.gene50700.t1;Parent=MS.gene50700.t1
chr4.3 exon 33731811 33732030 33731811 ID=MS.gene50700.t1.exon5;Parent=MS.gene50700.t1
chr4.3 CDS 33731811 33732030 33731811 ID=cds.MS.gene50700.t1;Parent=MS.gene50700.t1
chr4.3 exon 33731468 33731698 33731468 ID=MS.gene50700.t1.exon6;Parent=MS.gene50700.t1
chr4.3 CDS 33731468 33731698 33731468 ID=cds.MS.gene50700.t1;Parent=MS.gene50700.t1
Gene Sequence

>MS.gene50700

ATGCCAATCATTGGACTTGGAGTTTGGCGCATGGAAGGACAAGCAATCAAAGACCTAATCATCAATTCCATCAAAATCGGTTATCGTCATTTTGATTGTGCAGGTATTGTTTTTTTTTCTTTTTTTACTCCTTCAAATTTGGATTTCAATCTAGTTTTTTAGCTCATTGTTTTGAATTTTGATTGTGTTGTAGCTGACTACAAAAACGAAGCAGAAGTTGGAGAAGCACTTAAAGAAGCTTTTGACACTGGACTTGTGAAGAGGGAGGATCTTTTCATTACCACCAAGGTACAACTTGATTAGATACATGTGTTAAATAGGTTTACATTTACACCGTCGATGTATACAAATTAAATCCTAATTCTGATTATAAAGAAGGAAACATCAACAAGGCGAACAAATATGGATGATAGCTAGCTATTTTGGGAAGTTGAGCTAGACAAGTGTTTCAAGCAGTCAAATTCATCCATAATTGATTTTATCCTAAATAGATTAGCAATTTCTACTTTGATATTATGAGTTAATGGTATTTGGCATTTGAATCTGATTTCAGCTTTGGAATTCTGATCATGGACACGTTGTTGAGGCTTGCAAAGATAGTCTTAAGAAGCTTCAGTTAGATTATCTGGATTTATATCTTGTTCACTTTCCTGTAGCCACTAGGCACACTGGTATGTTTGGTTTCTTATGCTTCCCTTGACTTTTTAGTTTTGATGATATGTAGAAACTCTTGTTGTTGGCTTTCTCAAAGTATTGATATACTAATTGGAGTCATATATATAGTTAAAATATATCTACTTTTAGTCAAATCTGCTTTATGCTTTTTAATAAAATATTTCTATACATTCTATTTACTTGGTTAAACTGCGCCTATCAAAATTTGGGTTTGGGATATTTTAAGGTTTAACCATAGTTATCAATAGGCATGAAGAGGCAGCCAAAAAAAATGTTATAATGGGGTAGTGGAGAGTGGAATGACGTGACATGACATCTTTTAACATTTTTTTTTATATATATAAATGCTAAAACATTGGAAAATTATTCATGATTCGTGAACTATTGACATCTAATAATAAAATGGCATGGCTCTTGAGCAAAACATAGAAGTAGTTAACAAGGAAACAAAAGAAGGTTAAGTCTAAAATCCCCAAAGTACCCCCATCCCCCATCTGAAACATCTCTTTACAAGGGTGTTTGTAGGGTCCCTCCCCTGTCGTGGCCAATAGCTGCTATTATTTGCACCTTAAATTCCCCAGCGATTGCCCGTCCCCCATCTGAACATCTCTTTTTCTATAGCTAGAGAATAGTGACAGTCACCATTATTGGCCTCTATAGATAACTGTGAATTTAACATGTGATCTAAAACACTCTTGTGTTCTATAATATAATTTTGCCACATTTCTCACACATGCAGGGGTTGGTACTACTGATAGTGCTTTGGGTGAAGATGGGGTGCTGGACATAGATACAACCATATCCCTGGAAACTACCTGGCATGCGATGGAAGGCCTTGTTTCATCGGGCTTGGTTCGCAGCATAGGAATCAGGTCTAATTTTGTGCTGCAAGTAATCTTCACTATGACTTCTAGAAGTTGCTCTGGAAATCCTTTTTACGACTATAGTTTATGTGATGAATTTTACCTAATAATAAGGAAATAGTCAAATGAACAAAGATGAAAACAACTAATGACCAAACTTGATAGGTTCATGAGGACTGAAATTATCTCTCTAGTAATTATTCAGACGCGCATTAAAATGTGCCCTACAATTCCTGCATGCACGTTTATGTTATTTTGGGATGATTACTTGCAACTTATGTTAAAAGACTTAACAAAATATTTTGCAATGTTCATCATGATATTACTAACGGTCTTCTCAGTAATTAAGAAGTAAATTGTATTGACATTTACAGACATATGCAAGACATTTTGTGTGCTGGATCCTTGTCACATGTTTCATATTACATTTAGCTATTGCCAGTTTACCGCCTACCCTAATGGAATAATAATGCTTAGTTGCTATTGATGGGCTGTTTGTCTAATCTATTGAAAAGGGGAATGTGTTGGATAACCCATCTTAAGTATAATTTGTATGGTCTAATATTCATGTTATTGACTTCAGAAATCTTTGATTCTATTTAATGAAATTACAATCGGACAAAAACTATTTGCAGCAACTATGACATCTTTCTGACTAGAGATTGCTTAGCATATTCCAAGATAAAGCCTGCTGTAAATCAGATTGAAACTCATCCATACTTCCAGCGTGAGTCTCTAGTCAAATTTTGTCAGAAGCATGGAATTTGTGTAACAGCCCACACTCCACTTGGAGGTGCTGCAGCAAACAAAGAATGGTTTGGTACAGAGTCATGTTTGGATGAGCAAATTCTCAAAGTGAGTTGTCATTAACAAGTTCCAACACATATTAGTAGCCTATTATCTTATCTTATAACCATTATCTATCCAAAATCAGTAAATGTGACTAGTGTTGCGACTTTGATTTCAGGGTCTAGCTGAAAAATACAAAAAGACTGCGGCCCAGATTTCTCTTCGTTGGGGGATTCAAAGGAACACTGTTGTCATTCCTAAAACATCAAAACTGGAGAGATTGAAAGAGAACTTCCAGGTATTTGATTTTGAGTTGTCTAAAGAGGACATGGAGCTCATCAACGGTATGGACAGGAAATATCGAACTAATCAACCAGCCAAGTTTTGGGGCATAGATCTTTATGCATGA

Protein sequence

>MS.gene50700.t1

MPIIGLGVWRMEGQAIKDLIINSIKIGYRHFDCAADYKNEAEVGEALKEAFDTGLVKREDLFITTKLWNSDHGHVVEACKDSLKKLQLDYLDLYLVHFPVATRHTGVGTTDSALGEDGVLDIDTTISLETTWHAMEGLVSSGLVRSIGISNYDIFLTRDCLAYSKIKPAVNQIETHPYFQRESLVKFCQKHGICVTAHTPLGGAAANKEWFGTESCLDEQILKGLAEKYKKTAAQISLRWGIQRNTVVIPKTSKLERLKENFQVFDFELSKEDMELINGMDRKYRTNQPAKFWGIDLYA