Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019366.t1 | XP_013445004.1 | 99.4 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 1.00E-88 | 335.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019366.t1 | Q9LPC7 | 91.2 | 160 | 14 | 0 | 1 | 160 | 1 | 160 | 5.4e-86 | 318.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019366.t1 | G7ZW00 | 99.4 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 7.5e-89 | 335.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050574 | MS.gene019366 | PPI |
| MS.gene39668 | MS.gene019366 | PPI |
| MS.gene019366 | MS.gene007179 | PPI |
| MS.gene019366 | MS.gene014216 | PPI |
| MS.gene68752 | MS.gene019366 | PPI |
| MS.gene019366 | MS.gene024514 | PPI |
| MS.gene88451 | MS.gene019366 | PPI |
| MS.gene28703 | MS.gene019366 | PPI |
| MS.gene050281 | MS.gene019366 | PPI |
| MS.gene22872 | MS.gene019366 | PPI |
| MS.gene025980 | MS.gene019366 | PPI |
| MS.gene019366 | MS.gene003412 | PPI |
| MS.gene019366 | MS.gene048458 | PPI |
| MS.gene019366 | MS.gene04515 | PPI |
| MS.gene019366 | MS.gene052266 | PPI |
| MS.gene063104 | MS.gene019366 | PPI |
| MS.gene063787 | MS.gene019366 | PPI |
| MS.gene68153 | MS.gene019366 | PPI |
| MS.gene019366 | MS.gene04526 | PPI |
| MS.gene052269 | MS.gene019366 | PPI |
| MS.gene61767 | MS.gene019366 | PPI |
| MS.gene28963 | MS.gene019366 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019366.t1 | MTR_8g036015 | 99.375 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 2.21e-118 | 331 |
| MS.gene019366.t1 | MTR_5g015500 | 56.774 | 155 | 67 | 0 | 3 | 157 | 307 | 461 | 4.57e-58 | 189 |
| MS.gene019366.t1 | MTR_5g015500 | 56.774 | 155 | 67 | 0 | 3 | 157 | 347 | 501 | 1.23e-57 | 189 |
| MS.gene019366.t1 | MTR_7g105220 | 50.993 | 151 | 74 | 0 | 3 | 153 | 12 | 162 | 2.17e-54 | 169 |
| MS.gene019366.t1 | MTR_2g085075 | 50.658 | 152 | 75 | 0 | 2 | 153 | 463 | 614 | 6.91e-51 | 171 |
| MS.gene019366.t1 | MTR_8g079690 | 50.336 | 149 | 61 | 3 | 10 | 146 | 18 | 165 | 8.42e-41 | 140 |
| MS.gene019366.t1 | MTR_4g086760 | 50.331 | 151 | 62 | 4 | 10 | 148 | 18 | 167 | 3.91e-40 | 137 |
| MS.gene019366.t1 | MTR_4g086760 | 50.331 | 151 | 62 | 4 | 10 | 148 | 18 | 167 | 5.95e-40 | 138 |
| MS.gene019366.t1 | MTR_4g086760 | 50.331 | 151 | 62 | 4 | 10 | 148 | 18 | 167 | 6.82e-40 | 137 |
| MS.gene019366.t1 | MTR_7g095750 | 52.349 | 149 | 57 | 5 | 12 | 148 | 23 | 169 | 2.03e-37 | 135 |
| MS.gene019366.t1 | MTR_1g117010 | 47.586 | 145 | 71 | 4 | 9 | 149 | 93 | 236 | 1.05e-36 | 127 |
| MS.gene019366.t1 | MTR_1g117010 | 47.586 | 145 | 71 | 4 | 9 | 149 | 93 | 236 | 1.05e-36 | 127 |
| MS.gene019366.t1 | MTR_7g116340 | 52.206 | 136 | 53 | 3 | 10 | 134 | 18 | 152 | 1.27e-36 | 124 |
| MS.gene019366.t1 | MTR_7g110980 | 51.034 | 145 | 66 | 4 | 8 | 148 | 108 | 251 | 1.03e-35 | 124 |
| MS.gene019366.t1 | MTR_4g075290 | 46.835 | 158 | 66 | 6 | 10 | 152 | 18 | 172 | 3.18e-34 | 118 |
| MS.gene019366.t1 | MTR_1g085560 | 51.034 | 145 | 63 | 5 | 10 | 148 | 99 | 241 | 7.92e-34 | 119 |
| MS.gene019366.t1 | MTR_6g084140 | 39.157 | 166 | 93 | 2 | 1 | 158 | 1 | 166 | 4.68e-33 | 123 |
| MS.gene019366.t1 | MTR_6g084140 | 39.157 | 166 | 93 | 2 | 1 | 158 | 18 | 183 | 4.75e-33 | 123 |
| MS.gene019366.t1 | MTR_8g040180 | 48.951 | 143 | 62 | 4 | 10 | 142 | 32 | 173 | 5.13e-33 | 115 |
| MS.gene019366.t1 | MTR_3g117750 | 47.917 | 144 | 59 | 5 | 9 | 139 | 25 | 165 | 9.91e-33 | 115 |
| MS.gene019366.t1 | MTR_2g023120 | 44.654 | 159 | 84 | 3 | 3 | 158 | 15 | 172 | 3.83e-32 | 120 |
| MS.gene019366.t1 | MTR_3g070500 | 48.252 | 143 | 62 | 4 | 8 | 139 | 76 | 217 | 4.75e-32 | 114 |
| MS.gene019366.t1 | MTR_8g442420 | 38.554 | 166 | 94 | 2 | 1 | 158 | 1 | 166 | 8.05e-32 | 119 |
| MS.gene019366.t1 | MTR_3g463900 | 48.529 | 136 | 58 | 4 | 8 | 132 | 46 | 180 | 3.56e-31 | 111 |
| MS.gene019366.t1 | MTR_4g073650 | 44.853 | 136 | 63 | 4 | 8 | 132 | 58 | 192 | 1.26e-27 | 102 |
| MS.gene019366.t1 | MTR_3g070500 | 52.252 | 111 | 41 | 4 | 8 | 107 | 76 | 185 | 1.04e-24 | 94.4 |
| MS.gene019366.t1 | MTR_3g107660 | 40.000 | 130 | 65 | 3 | 15 | 132 | 29 | 157 | 1.14e-21 | 90.9 |
| MS.gene019366.t1 | MTR_1g011980 | 39.231 | 130 | 65 | 4 | 15 | 132 | 26 | 153 | 1.24e-19 | 85.1 |
| MS.gene019366.t1 | MTR_1g094065 | 33.775 | 151 | 92 | 3 | 4 | 153 | 83 | 226 | 8.44e-19 | 80.1 |
| MS.gene019366.t1 | MTR_1g035360 | 34.247 | 146 | 85 | 4 | 4 | 146 | 82 | 219 | 1.62e-18 | 79.3 |
| MS.gene019366.t1 | MTR_3g085705 | 42.268 | 97 | 52 | 2 | 46 | 142 | 33 | 125 | 1.42e-15 | 69.3 |
| MS.gene019366.t1 | MTR_5g039210 | 30.994 | 171 | 95 | 6 | 3 | 158 | 28 | 190 | 8.35e-14 | 66.2 |
| MS.gene019366.t1 | MTR_3g070500 | 47.191 | 89 | 35 | 4 | 8 | 85 | 76 | 163 | 4.80e-13 | 63.5 |
| MS.gene019366.t1 | MTR_5g039210 | 32.192 | 146 | 79 | 5 | 3 | 136 | 28 | 165 | 5.07e-13 | 64.3 |
| MS.gene019366.t1 | MTR_3g070500 | 48.235 | 85 | 32 | 4 | 8 | 81 | 76 | 159 | 7.13e-13 | 63.2 |
| MS.gene019366.t1 | MTR_8g036030 | 100.000 | 27 | 0 | 0 | 134 | 160 | 69 | 95 | 1.76e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019366.t1 | AT1G01940 | 91.250 | 160 | 14 | 0 | 1 | 160 | 1 | 160 | 1.50e-111 | 313 |
| MS.gene019366.t1 | AT2G36130 | 52.318 | 151 | 72 | 0 | 3 | 153 | 12 | 162 | 5.80e-55 | 171 |
| MS.gene019366.t1 | AT5G67530 | 53.548 | 155 | 72 | 0 | 3 | 157 | 346 | 500 | 1.41e-54 | 181 |
| MS.gene019366.t1 | AT3G44600 | 51.316 | 152 | 74 | 0 | 2 | 153 | 477 | 628 | 1.51e-50 | 171 |
| MS.gene019366.t1 | AT3G63400 | 50.336 | 149 | 60 | 5 | 12 | 148 | 23 | 169 | 1.83e-38 | 135 |
| MS.gene019366.t1 | AT5G13120 | 50.355 | 141 | 65 | 4 | 10 | 146 | 103 | 242 | 4.20e-38 | 130 |
| MS.gene019366.t1 | AT5G13120 | 50.355 | 141 | 65 | 4 | 10 | 146 | 107 | 246 | 4.64e-38 | 130 |
| MS.gene019366.t1 | AT4G33060 | 47.917 | 144 | 71 | 3 | 3 | 143 | 15 | 157 | 6.37e-38 | 135 |
| MS.gene019366.t1 | AT3G63400 | 49.664 | 149 | 61 | 4 | 12 | 148 | 23 | 169 | 4.10e-37 | 134 |
| MS.gene019366.t1 | AT3G63400 | 49.664 | 149 | 61 | 4 | 12 | 148 | 23 | 169 | 4.10e-37 | 134 |
| MS.gene019366.t1 | AT3G63400 | 49.664 | 149 | 61 | 4 | 12 | 148 | 23 | 169 | 4.10e-37 | 134 |
| MS.gene019366.t1 | AT4G34870 | 50.000 | 146 | 57 | 4 | 7 | 139 | 15 | 157 | 8.34e-37 | 125 |
| MS.gene019366.t1 | AT3G62030 | 52.083 | 144 | 62 | 4 | 10 | 148 | 108 | 249 | 1.97e-35 | 124 |
| MS.gene019366.t1 | AT3G56070 | 45.283 | 159 | 74 | 4 | 10 | 157 | 18 | 174 | 2.08e-35 | 121 |
| MS.gene019366.t1 | AT3G56070 | 45.283 | 159 | 74 | 4 | 10 | 157 | 18 | 174 | 2.08e-35 | 121 |
| MS.gene019366.t1 | AT3G62030 | 52.083 | 144 | 62 | 4 | 10 | 148 | 109 | 250 | 2.18e-35 | 124 |
| MS.gene019366.t1 | AT3G62030 | 52.083 | 144 | 62 | 4 | 10 | 148 | 162 | 303 | 7.54e-35 | 124 |
| MS.gene019366.t1 | AT2G21130 | 50.355 | 141 | 58 | 4 | 10 | 139 | 19 | 158 | 1.39e-34 | 119 |
| MS.gene019366.t1 | AT2G15790 | 51.852 | 135 | 52 | 3 | 10 | 132 | 18 | 151 | 4.77e-34 | 122 |
| MS.gene019366.t1 | AT4G38740 | 48.227 | 141 | 61 | 3 | 10 | 139 | 18 | 157 | 5.31e-34 | 117 |
| MS.gene019366.t1 | AT3G55920 | 48.936 | 141 | 60 | 3 | 10 | 139 | 73 | 212 | 2.78e-33 | 117 |
| MS.gene019366.t1 | AT1G53720 | 37.952 | 166 | 95 | 2 | 1 | 158 | 1 | 166 | 8.94e-33 | 119 |
| MS.gene019366.t1 | AT1G53720 | 37.952 | 166 | 95 | 2 | 1 | 158 | 1 | 166 | 4.17e-32 | 119 |
| MS.gene019366.t1 | AT2G16600 | 46.853 | 143 | 60 | 4 | 10 | 139 | 19 | 158 | 1.87e-31 | 111 |
| MS.gene019366.t1 | AT2G29960 | 49.254 | 134 | 56 | 4 | 10 | 132 | 46 | 178 | 2.38e-31 | 112 |
| MS.gene019366.t1 | AT2G29960 | 49.254 | 134 | 56 | 4 | 10 | 132 | 46 | 178 | 2.38e-31 | 112 |
| MS.gene019366.t1 | AT5G58710 | 47.015 | 134 | 59 | 3 | 10 | 132 | 49 | 181 | 5.35e-29 | 105 |
| MS.gene019366.t1 | AT2G38730 | 46.528 | 144 | 64 | 5 | 10 | 142 | 46 | 187 | 1.27e-28 | 105 |
| MS.gene019366.t1 | AT4G34960 | 45.736 | 129 | 58 | 4 | 9 | 126 | 60 | 187 | 8.17e-26 | 98.2 |
| MS.gene019366.t1 | AT2G16600 | 43.939 | 132 | 58 | 3 | 10 | 139 | 19 | 136 | 2.19e-25 | 95.1 |
| MS.gene019366.t1 | AT2G29960 | 44.776 | 134 | 52 | 5 | 10 | 132 | 46 | 168 | 1.39e-24 | 94.4 |
| MS.gene019366.t1 | AT4G34960 | 47.273 | 110 | 46 | 4 | 9 | 107 | 60 | 168 | 2.51e-21 | 85.5 |
| MS.gene019366.t1 | AT4G32420 | 35.811 | 148 | 81 | 5 | 15 | 150 | 26 | 171 | 1.47e-17 | 79.3 |
| MS.gene019366.t1 | AT4G32420 | 35.811 | 148 | 81 | 5 | 15 | 150 | 26 | 171 | 1.47e-17 | 79.3 |
| MS.gene019366.t1 | AT4G32420 | 35.811 | 148 | 81 | 5 | 15 | 150 | 26 | 171 | 1.47e-17 | 79.3 |
| MS.gene019366.t1 | AT4G32420 | 35.811 | 148 | 81 | 5 | 15 | 150 | 26 | 171 | 1.47e-17 | 79.3 |
| MS.gene019366.t1 | AT2G47320 | 32.667 | 150 | 97 | 2 | 4 | 153 | 81 | 226 | 2.10e-17 | 76.3 |
| MS.gene019366.t1 | AT4G32420 | 38.168 | 131 | 68 | 4 | 15 | 133 | 26 | 155 | 7.41e-17 | 77.0 |
| MS.gene019366.t1 | AT1G53780 | 39.326 | 89 | 53 | 1 | 71 | 158 | 4 | 92 | 3.68e-14 | 69.3 |
| MS.gene019366.t1 | AT3G66654 | 28.188 | 149 | 106 | 1 | 5 | 153 | 85 | 232 | 5.47e-12 | 62.0 |
| MS.gene019366.t1 | AT3G66654 | 28.188 | 149 | 106 | 1 | 5 | 153 | 85 | 232 | 5.47e-12 | 62.0 |
| MS.gene019366.t1 | AT3G66654 | 28.188 | 149 | 106 | 1 | 5 | 153 | 85 | 232 | 5.47e-12 | 62.0 |
| MS.gene019366.t1 | AT3G66654 | 28.188 | 149 | 106 | 1 | 5 | 153 | 85 | 232 | 5.47e-12 | 62.0 |
| MS.gene019366.t1 | AT3G66654 | 28.188 | 149 | 106 | 1 | 5 | 153 | 85 | 232 | 5.47e-12 | 62.0 |
| MS.gene019366.t1 | AT1G26940 | 30.986 | 142 | 90 | 4 | 1 | 136 | 1 | 140 | 9.62e-12 | 60.8 |
| MS.gene019366.t1 | AT1G26940 | 31.429 | 140 | 88 | 4 | 3 | 136 | 34 | 171 | 1.63e-11 | 60.5 |
Find 40 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTTCACCGCAATATTAA+AGG | 0.210104 | 8.3:-59823617 | MS.gene019366:CDS |
| AACTGACTTCCATTAGTATT+TGG | 0.214721 | 8.3:+59822923 | None:intergenic |
| AGTACGTACCTCGGAGGTTT+TGG | 0.245446 | 8.3:+59823824 | None:intergenic |
| TTTGTTGTGCAGACTCCAAC+AGG | 0.336703 | 8.3:-59822097 | MS.gene019366:intron |
| ATGCATTCTAATCCACTTGC+TGG | 0.376927 | 8.3:-59822028 | MS.gene019366:CDS |
| AATGGACTATACACCGTGTT+TGG | 0.381087 | 8.3:-59822869 | MS.gene019366:CDS |
| GCAAAACAACCACATTTGAA+TGG | 0.399385 | 8.3:-59822887 | MS.gene019366:CDS |
| GTGTTTGGAAGAGTAATTCA+TGG | 0.424305 | 8.3:-59822854 | MS.gene019366:CDS |
| TGTGCAAGTGGTTACTTTGA+TGG | 0.436733 | 8.3:-59823644 | MS.gene019366:CDS |
| ATTTGAAGTTCTTGATCTCA+TGG | 0.441468 | 8.3:-59822831 | MS.gene019366:CDS |
| GTGCAAGTGGTTACTTTGAT+GGG | 0.447542 | 8.3:-59823643 | MS.gene019366:CDS |
| GATCCAACTGGTACCGGCAA+AGG | 0.454778 | 8.3:-59823575 | MS.gene019366:CDS |
| ATCCAACTGGTACCGGCAAA+GGG | 0.456047 | 8.3:-59823574 | MS.gene019366:CDS |
| AGTTCTTGATCTCATGGAAA+AGG | 0.470855 | 8.3:-59822825 | MS.gene019366:intron |
| CGAGATAAGAGAATCTTTGA+AGG | 0.476005 | 8.3:-59823519 | MS.gene019366:intron |
| AACAGTGGTCCAAATACTAA+TGG | 0.476528 | 8.3:-59822932 | MS.gene019366:CDS |
| GGTGGAGATCCAACTGGTAC+CGG | 0.512107 | 8.3:-59823581 | MS.gene019366:CDS |
| ATCGACCGCTTGCAGAGATA+AGG | 0.523160 | 8.3:-59822066 | MS.gene019366:CDS |
| TCATAAAACCTTTAATATTG+CGG | 0.529387 | 8.3:+59823609 | None:intergenic |
| GTGCAGACTCCAACAGGGGC+AGG | 0.534782 | 8.3:-59822091 | MS.gene019366:intron |
| TGCAAGGGGAATATTGTCAA+TGG | 0.546666 | 8.3:-59822957 | MS.gene019366:CDS |
| ATTCAAGGTGGAGATCCAAC+TGG | 0.551039 | 8.3:-59823587 | MS.gene019366:CDS |
| GGTCGATCACCTGCCCCTGT+TGG | 0.556160 | 8.3:+59822082 | None:intergenic |
| CCAACTGGTACCGGCAAAGG+GGG | 0.557700 | 8.3:-59823572 | MS.gene019366:CDS |
| TCCAACTGGTACCGGCAAAG+GGG | 0.565649 | 8.3:-59823573 | MS.gene019366:CDS |
| TGTTGTGCAGACTCCAACAG+GGG | 0.570681 | 8.3:-59822095 | MS.gene019366:intron |
| GTGTGTTCCAGCATAATGCA+AGG | 0.572411 | 8.3:-59822973 | MS.gene019366:intron |
| AGACCAGTCTATCCAGCAAG+TGG | 0.583446 | 8.3:+59822016 | None:intergenic |
| TGTGTTCCAGCATAATGCAA+GGG | 0.592664 | 8.3:-59822972 | MS.gene019366:intron |
| ATGAATTACTCTTCCAAACA+CGG | 0.615509 | 8.3:+59822856 | None:intergenic |
| TTTCGCATTTGATATCACCT+AGG | 0.629054 | 8.3:+59823865 | None:intergenic |
| GTGTATAGTCCATTCAAATG+TGG | 0.635991 | 8.3:+59822878 | None:intergenic |
| TTGTTGTGCAGACTCCAACA+GGG | 0.638282 | 8.3:-59822096 | MS.gene019366:intron |
| GTTACTCTTCACACAAACCT+AGG | 0.645766 | 8.3:-59823882 | MS.gene019366:CDS |
| CAACTGGTACCGGCAAAGGG+GGG | 0.655196 | 8.3:-59823571 | MS.gene019366:CDS |
| TTGAGCCTTATCTCTGCAAG+CGG | 0.665431 | 8.3:+59822061 | None:intergenic |
| GTGTTCCAGCATAATGCAAG+GGG | 0.668599 | 8.3:-59822971 | MS.gene019366:intron |
| TTATGAAGTACGTACCTCGG+AGG | 0.716745 | 8.3:+59823818 | None:intergenic |
| TGAAGTTCCCAAAACCTCCG+AGG | 0.723009 | 8.3:-59823832 | MS.gene019366:intron |
| ATATTGTCAATGGCTAACAG+TGG | 0.731092 | 8.3:-59822947 | MS.gene019366:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTTTATCAAAAAATTA+GGG | - | chr8.3:59823208-59823227 | MS.gene019366:intron | 10.0% |
| !! | TTATAAAAATATTCATTCAA+TGG | + | chr8.3:59823504-59823523 | None:intergenic | 10.0% |
| !!! | AATTTGTTTATCAAAAAATT+AGG | - | chr8.3:59823207-59823226 | MS.gene019366:intron | 10.0% |
| !! | AAATAGAATGTAATCATAAT+AGG | + | chr8.3:59823684-59823703 | None:intergenic | 15.0% |
| !! | TTTATAAAAACAAACGAAAT+AGG | - | chr8.3:59822622-59822641 | MS.gene019366:intron | 15.0% |
| !!! | AAAATTCATTTTGAATGAAA+AGG | + | chr8.3:59822882-59822901 | None:intergenic | 15.0% |
| !!! | CAAAAAAAAAAAAGTATGAA+TGG | - | chr8.3:59823560-59823579 | MS.gene019366:CDS | 15.0% |
| !!! | CAATCTTTTAAAAATTGAAT+CGG | + | chr8.3:59823383-59823402 | None:intergenic | 15.0% |
| !!! | TTCATACTTTTTTTTTTTTG+TGG | + | chr8.3:59823560-59823579 | None:intergenic | 15.0% |
| !! | AATATCAGAAATATGAAATC+TGG | - | chr8.3:59822790-59822809 | MS.gene019366:intron | 20.0% |
| !! | ATAACCAATTGTTATCTTAA+CGG | - | chr8.3:59822190-59822209 | MS.gene019366:intron | 20.0% |
| !! | TCATAAAACCTTTAATATTG+CGG | + | chr8.3:59822383-59822402 | None:intergenic | 20.0% |
| !!! | ATTAAAGGTTTTATGATTCA+AGG | - | chr8.3:59822387-59822406 | MS.gene019366:intron | 20.0% |
| !!! | TTTTGTTACCGATAATATAT+AGG | - | chr8.3:59823791-59823810 | MS.gene019366:intron | 20.0% |
| ! | AAATAACCAAACTGAAGTAA+AGG | + | chr8.3:59823277-59823296 | None:intergenic | 25.0% |
| ! | AAGTATGAATGGAGAAAAAT+TGG | - | chr8.3:59823571-59823590 | MS.gene019366:CDS | 25.0% |
| ! | AATAGTTGAATGTGATCATT+AGG | - | chr8.3:59823458-59823477 | MS.gene019366:intron | 25.0% |
| ! | AGTATGAATGGAGAAAAATT+GGG | - | chr8.3:59823572-59823591 | MS.gene019366:CDS | 25.0% |
| ! | ATATTTCACCGCAATATTAA+AGG | - | chr8.3:59822372-59822391 | MS.gene019366:intron | 25.0% |
| ! | CATTTACGCCTATATATTAT+CGG | + | chr8.3:59823802-59823821 | None:intergenic | 25.0% |
| ! | GATCTATTATTTCGATAGTT+GGG | + | chr8.3:59823662-59823681 | None:intergenic | 25.0% |
| ! | TAACCAATTGTTATCTTAAC+GGG | - | chr8.3:59822191-59822210 | MS.gene019366:intron | 25.0% |
| ! | TTTAAAAATTGAATCGGACA+TGG | + | chr8.3:59823377-59823396 | None:intergenic | 25.0% |
| !! | AAAAGATTGATTGATGATCA+AGG | - | chr8.3:59823394-59823413 | MS.gene019366:intron | 25.0% |
| !! | CAAGAATTACATGATTTTAC+CGG | + | chr8.3:59822225-59822244 | None:intergenic | 25.0% |
| !!! | CTGTTCAGTTTTTAAAACAT+TGG | + | chr8.3:59823240-59823259 | None:intergenic | 25.0% |
| AAAGTATAACAGATTGCCTA+AGG | + | chr8.3:59822758-59822777 | None:intergenic | 30.0% | |
| ACCAATTGAAACAACAGAAT+AGG | + | chr8.3:59822249-59822268 | None:intergenic | 30.0% | |
| ATGAATTACTCTTCCAAACA+CGG | + | chr8.3:59823136-59823155 | None:intergenic | 30.0% | |
| ATGTTTAGTATTTGAGTGCA+TGG | + | chr8.3:59823845-59823864 | None:intergenic | 30.0% | |
| CCAATTGAAACAACAGAATA+GGG | + | chr8.3:59822248-59822267 | None:intergenic | 30.0% | |
| GGATCTATTATTTCGATAGT+TGG | + | chr8.3:59823663-59823682 | None:intergenic | 30.0% | |
| GTAGTTAAAACATGACTCAA+AGG | - | chr8.3:59823340-59823359 | MS.gene019366:intron | 30.0% | |
| TAGAATTGACGAAGTATATG+CGG | - | chr8.3:59822648-59822667 | MS.gene019366:intron | 30.0% | |
| TCTTCTATTGTTTGTTCAGT+CGG | - | chr8.3:59822085-59822104 | MS.gene019366:CDS | 30.0% | |
| TTGAATGTGATCATTAGGAA+TGG | - | chr8.3:59823463-59823482 | MS.gene019366:intron | 30.0% | |
| ! | AACTGACTTCCATTAGTATT+TGG | + | chr8.3:59823069-59823088 | None:intergenic | 30.0% |
| ! | ATTTGAAGTTCTTGATCTCA+TGG | - | chr8.3:59823158-59823177 | MS.gene019366:intron | 30.0% |
| ! | GAAATTGATGGATGAAAATG+AGG | - | chr8.3:59822678-59822697 | MS.gene019366:intron | 30.0% |
| ! | GTTTGATCACAATTTTGTCT+CGG | - | chr8.3:59823302-59823321 | MS.gene019366:intron | 30.0% |
| ! | TATTTTCTCCATAATGCACA+AGG | + | chr8.3:59822945-59822964 | None:intergenic | 30.0% |
| ! | TTTTCTTCATCAGATTTTCG+TGG | - | chr8.3:59822972-59822991 | MS.gene019366:intron | 30.0% |
| !! | AAAGGTTTTATGATTCAAGG+TGG | - | chr8.3:59822390-59822409 | MS.gene019366:intron | 30.0% |
| !! | AATTGTTATCTTAACGGGTT+CGG | - | chr8.3:59822196-59822215 | MS.gene019366:intron | 30.0% |
| !!! | CTTCAGTTTGGTTATTTTTG+TGG | - | chr8.3:59823280-59823299 | MS.gene019366:intron | 30.0% |
| AACAGTGGTCCAAATACTAA+TGG | - | chr8.3:59823057-59823076 | MS.gene019366:intron | 35.0% | |
| AGTTCTTGATCTCATGGAAA+AGG | - | chr8.3:59823164-59823183 | MS.gene019366:intron | 35.0% | |
| ATATTGTCAATGGCTAACAG+TGG | - | chr8.3:59823042-59823061 | MS.gene019366:intron | 35.0% | |
| ATGTGATCATTAGGAATGGA+AGG | - | chr8.3:59823467-59823486 | MS.gene019366:intron | 35.0% | |
| CGAAAACTAATGAATCGTGA+TGG | + | chr8.3:59823632-59823651 | None:intergenic | 35.0% | |
| CGAGATAAGAGAATCTTTGA+AGG | - | chr8.3:59822470-59822489 | MS.gene019366:intron | 35.0% | |
| GAACCCGTTAAGATAACAAT+TGG | + | chr8.3:59822197-59822216 | None:intergenic | 35.0% | |
| GCAAAACAACCACATTTGAA+TGG | - | chr8.3:59823102-59823121 | MS.gene019366:intron | 35.0% | |
| GCTTAACAAATACTACACAC+AGG | + | chr8.3:59822552-59822571 | None:intergenic | 35.0% | |
| GTGTATAGTCCATTCAAATG+TGG | + | chr8.3:59823114-59823133 | None:intergenic | 35.0% | |
| GTGTTTGGAAGAGTAATTCA+TGG | - | chr8.3:59823135-59823154 | MS.gene019366:intron | 35.0% | |
| TATCTGTCAAATGCTACCTT+AGG | - | chr8.3:59822739-59822758 | MS.gene019366:intron | 35.0% | |
| TGTGATCATTAGGAATGGAA+GGG | - | chr8.3:59823468-59823487 | MS.gene019366:intron | 35.0% | |
| TTTCGCATTTGATATCACCT+AGG | + | chr8.3:59822127-59822146 | None:intergenic | 35.0% | |
| ! | AGATTTTCGTGGTAGCTAAT+TGG | - | chr8.3:59822983-59823002 | MS.gene019366:intron | 35.0% |
| ! | CTGATTTGACAACACAATGA+AGG | - | chr8.3:59823733-59823752 | MS.gene019366:intron | 35.0% |
| ! | GAGTTTTTCCTTGTGCATTA+TGG | - | chr8.3:59822934-59822953 | MS.gene019366:CDS | 35.0% |
| ! | TACCATGACACCATGTTTTT+GGG | - | chr8.3:59822515-59822534 | MS.gene019366:intron | 35.0% |
| ! | TGCGGTTTTACTGAAATTGA+TGG | - | chr8.3:59822666-59822685 | MS.gene019366:intron | 35.0% |
| ! | TTACCATGACACCATGTTTT+TGG | - | chr8.3:59822514-59822533 | MS.gene019366:intron | 35.0% |
| ! | TTCACTTGTTCAGTATTGGA+TGG | - | chr8.3:59823598-59823617 | MS.gene019366:CDS | 35.0% |
| !! | ATTGTTATCTTAACGGGTTC+GGG | - | chr8.3:59822197-59822216 | MS.gene019366:intron | 35.0% |
| !! | CCCTATTCTGTTGTTTCAAT+TGG | - | chr8.3:59822245-59822264 | MS.gene019366:intron | 35.0% |
| AATTGAATCGGACATGGAAC+AGG | + | chr8.3:59823371-59823390 | None:intergenic | 40.0% | |
| ACAGCATAACCCCAAAAACA+TGG | + | chr8.3:59822528-59822547 | None:intergenic | 40.0% | |
| ACTGAACAGAAACCTTGAAC+TGG | - | chr8.3:59823251-59823270 | MS.gene019366:intron | 40.0% | |
| ATATTCCCCTTGCATTATGC+TGG | + | chr8.3:59823026-59823045 | None:intergenic | 40.0% | |
| ATGCATTCTAATCCACTTGC+TGG | - | chr8.3:59823961-59823980 | MS.gene019366:intron | 40.0% | |
| CATCAATCCAAACATAGCCT+AGG | - | chr8.3:59823704-59823723 | MS.gene019366:intron | 40.0% | |
| CCAAACATAGCCTACAATTC+TGG | + | chr8.3:59823424-59823443 | None:intergenic | 40.0% | |
| CCAGAATTGTAGGCTATGTT+TGG | - | chr8.3:59823421-59823440 | MS.gene019366:intron | 40.0% | |
| GCTGTTCACTTGTTCAGTAT+TGG | - | chr8.3:59823594-59823613 | MS.gene019366:CDS | 40.0% | |
| GTTACTCTTCACACAAACCT+AGG | - | chr8.3:59822107-59822126 | MS.gene019366:intron | 40.0% | |
| TCAAGGTTGACCAGAATTGT+AGG | - | chr8.3:59823411-59823430 | MS.gene019366:intron | 40.0% | |
| TGCAAGGGGAATATTGTCAA+TGG | - | chr8.3:59823032-59823051 | MS.gene019366:intron | 40.0% | |
| TGGTGTGTGAATTCTAGATG+AGG | + | chr8.3:59823825-59823844 | None:intergenic | 40.0% | |
| TGGTTATGAAGTACGTACCT+CGG | + | chr8.3:59822177-59822196 | None:intergenic | 40.0% | |
| TGTCAAATCAGTCAAGTCCT+AGG | + | chr8.3:59823724-59823743 | None:intergenic | 40.0% | |
| TGTGTTCCAGCATAATGCAA+GGG | - | chr8.3:59823017-59823036 | MS.gene019366:intron | 40.0% | |
| ! | GTGCAAGTGGTTACTTTGAT+GGG | - | chr8.3:59822346-59822365 | MS.gene019366:intron | 40.0% |
| ! | TGTGCAAGTGGTTACTTTGA+TGG | - | chr8.3:59822345-59822364 | MS.gene019366:intron | 40.0% |
| !! | AACTGGCCTTTACTTCAGTT+TGG | - | chr8.3:59823268-59823287 | MS.gene019366:intron | 40.0% |
| !! | AATGGACTATACACCGTGTT+TGG | - | chr8.3:59823120-59823139 | MS.gene019366:intron | 40.0% |
| !! | ACCATGACACCATGTTTTTG+GGG | - | chr8.3:59822516-59822535 | MS.gene019366:intron | 40.0% |
| !! | TTTTTAGCGCTTTGTGCAAG+TGG | - | chr8.3:59822333-59822352 | MS.gene019366:intron | 40.0% |
| ATTCAAGGTGGAGATCCAAC+TGG | - | chr8.3:59822402-59822421 | MS.gene019366:intron | 45.0% | |
| CTGAAGTAAAGGCCAGTTCA+AGG | + | chr8.3:59823266-59823285 | None:intergenic | 45.0% | |
| GTCAAGTCCTAGGCTATGTT+TGG | + | chr8.3:59823714-59823733 | None:intergenic | 45.0% | |
| GTGTGTTCCAGCATAATGCA+AGG | - | chr8.3:59823016-59823035 | MS.gene019366:intron | 45.0% | |
| GTGTTCCAGCATAATGCAAG+GGG | - | chr8.3:59823018-59823037 | MS.gene019366:intron | 45.0% | |
| TGTCATGGTAATTAGCGCGT+CGG | + | chr8.3:59822505-59822524 | None:intergenic | 45.0% | |
| TTATGAAGTACGTACCTCGG+AGG | + | chr8.3:59822174-59822193 | None:intergenic | 45.0% | |
| TTGTTGTGCAGACTCCAACA+GGG | - | chr8.3:59823893-59823912 | MS.gene019366:intron | 45.0% | |
| ! | AAAGGGGGGACTAGTATTTG+GGG | - | chr8.3:59822432-59822451 | MS.gene019366:intron | 45.0% |
| ! | ACCCCAAAAACATGGTGTCA+TGG | + | chr8.3:59822520-59822539 | None:intergenic | 45.0% |
| ! | CAAAGGGGGGACTAGTATTT+GGG | - | chr8.3:59822431-59822450 | MS.gene019366:intron | 45.0% |
| ! | TTGAGCCTTATCTCTGCAAG+CGG | + | chr8.3:59823931-59823950 | None:intergenic | 45.0% |
| ! | TTTGTTGTGCAGACTCCAAC+AGG | - | chr8.3:59823892-59823911 | MS.gene019366:intron | 45.0% |
| AATACTAGTCCCCCCTTTGC+CGG | + | chr8.3:59822430-59822449 | None:intergenic | 50.0% | |
| ATCGACCGCTTGCAGAGATA+AGG | - | chr8.3:59823923-59823942 | MS.gene019366:intron | 50.0% | |
| TGAAGTTCCCAAAACCTCCG+AGG | - | chr8.3:59822157-59822176 | MS.gene019366:intron | 50.0% | |
| TGTTGTGCAGACTCCAACAG+GGG | - | chr8.3:59823894-59823913 | MS.gene019366:intron | 50.0% | |
| ! | AGTACGTACCTCGGAGGTTT+TGG | + | chr8.3:59822168-59822187 | None:intergenic | 50.0% |
| ! | GCAAAGGGGGGACTAGTATT+TGG | - | chr8.3:59822430-59822449 | MS.gene019366:intron | 50.0% |
| ! | GTACGTACCTCGGAGGTTTT+GGG | + | chr8.3:59822167-59822186 | None:intergenic | 50.0% |
| !! | ATCCAACTGGTACCGGCAAA+GGG | - | chr8.3:59822415-59822434 | MS.gene019366:intron | 50.0% |
| !! | ATCTTAACGGGTTCGGGTTC+CGG | - | chr8.3:59822203-59822222 | MS.gene019366:intron | 50.0% |
| GGTGGAGATCCAACTGGTAC+CGG | - | chr8.3:59822408-59822427 | MS.gene019366:intron | 55.0% | |
| !! | GATCCAACTGGTACCGGCAA+AGG | - | chr8.3:59822414-59822433 | MS.gene019366:intron | 55.0% |
| !! | TCCAACTGGTACCGGCAAAG+GGG | - | chr8.3:59822416-59822435 | MS.gene019366:intron | 55.0% |
| !! | CAACTGGTACCGGCAAAGGG+GGG | - | chr8.3:59822418-59822437 | MS.gene019366:intron | 60.0% |
| !! | CCAACTGGTACCGGCAAAGG+GGG | - | chr8.3:59822417-59822436 | MS.gene019366:intron | 60.0% |
| CCCCCTTTGCCGGTACCAGT+TGG | + | chr8.3:59822420-59822439 | None:intergenic | 65.0% | |
| GGTCGATCACCTGCCCCTGT+TGG | + | chr8.3:59823910-59823929 | None:intergenic | 65.0% | |
| GTGCAGACTCCAACAGGGGC+AGG | - | chr8.3:59823898-59823917 | MS.gene019366:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 59822024 | 59823987 | 59822024 | ID=MS.gene019366 |
| chr8.3 | mRNA | 59822024 | 59823987 | 59822024 | ID=MS.gene019366.t1;Parent=MS.gene019366 |
| chr8.3 | exon | 59823985 | 59823987 | 59823985 | ID=MS.gene019366.t1.exon1;Parent=MS.gene019366.t1 |
| chr8.3 | CDS | 59823985 | 59823987 | 59823985 | ID=cds.MS.gene019366.t1;Parent=MS.gene019366.t1 |
| chr8.3 | exon | 59823833 | 59823907 | 59823833 | ID=MS.gene019366.t1.exon2;Parent=MS.gene019366.t1 |
| chr8.3 | CDS | 59823833 | 59823907 | 59823833 | ID=cds.MS.gene019366.t1;Parent=MS.gene019366.t1 |
| chr8.3 | exon | 59823520 | 59823681 | 59823520 | ID=MS.gene019366.t1.exon3;Parent=MS.gene019366.t1 |
| chr8.3 | CDS | 59823520 | 59823681 | 59823520 | ID=cds.MS.gene019366.t1;Parent=MS.gene019366.t1 |
| chr8.3 | exon | 59822826 | 59822984 | 59822826 | ID=MS.gene019366.t1.exon4;Parent=MS.gene019366.t1 |
| chr8.3 | CDS | 59822826 | 59822984 | 59822826 | ID=cds.MS.gene019366.t1;Parent=MS.gene019366.t1 |
| chr8.3 | exon | 59822024 | 59822107 | 59822024 | ID=MS.gene019366.t1.exon5;Parent=MS.gene019366.t1 |
| chr8.3 | CDS | 59822024 | 59822107 | 59822024 | ID=cds.MS.gene019366.t1;Parent=MS.gene019366.t1 |
| Gene Sequence |
| Protein sequence |
