AlfalfaGEDB | MS.gene014216

M. sativa cultivar XinJiangDaYe / MS.gene014216

KEGG: K01802
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00160.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014216.t1	XP_003604030.1	93.7	191	9	2	1	188	1	191	3.50E-96	360.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014216.t1	Q8W171	85.4	171	25	0	8	178	2	172	4.9e-86	318.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014216.t1	G7J8H2	93.7	191	9	2	1	188	1	191	2.6e-96	360.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene051153	MS.gene014216	PPI
MS.gene014216	MS.gene003412	PPI
MS.gene014216	MS.gene048458	PPI
MS.gene55545	MS.gene014216	PPI
MS.gene014216	MS.gene04515	PPI
MS.gene014216	MS.gene074045	PPI
MS.gene014216	MS.gene052266	PPI
MS.gene019366	MS.gene014216	PPI
MS.gene014216	MS.gene04526	PPI
MS.gene61767	MS.gene014216	PPI
MS.gene28963	MS.gene014216	PPI
MS.gene68752	MS.gene014216	PPI
MS.gene88451	MS.gene014216	PPI
MS.gene83474	MS.gene014216	PPI
MS.gene050281	MS.gene014216	PPI
MS.gene22872	MS.gene014216	PPI
MS.gene050574	MS.gene014216	PPI
MS.gene39668	MS.gene014216	PPI
MS.gene003412	MS.gene014216	PPI
MS.gene82121	MS.gene014216	PPI
MS.gene014216	MS.gene72809	PPI
MS.gene28703	MS.gene014216	PPI
MS.gene025980	MS.gene014216	PPI
MS.gene68153	MS.gene014216	PPI
MS.gene014216	MS.gene47195	PPI
MS.gene014216	MS.gene007179	PPI
MS.gene014216	MS.gene23546	PPI
MS.gene014216	MS.gene028111	PPI
MS.gene014216	MS.gene024514	PPI
MS.gene052269	MS.gene014216	PPI
MS.gene063104	MS.gene014216	PPI
MS.gene063787	MS.gene014216	PPI
MS.gene23663	MS.gene014216	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014216.t1	MTR_3g117750	97.861	187	3	1	3	188	5	191	2.08e-133	371
MS.gene014216.t1	MTR_4g075290	86.471	170	23	0	9	178	3	172	1.12e-109	310
MS.gene014216.t1	MTR_7g116340	76.471	170	40	0	9	178	3	172	4.75e-97	278
MS.gene014216.t1	MTR_3g463900	67.665	167	54	0	11	177	35	201	1.79e-79	235
MS.gene014216.t1	MTR_3g070500	62.921	178	66	0	1	178	55	232	4.38e-79	235
MS.gene014216.t1	MTR_7g095750	63.743	171	61	1	9	178	6	176	9.26e-75	236
MS.gene014216.t1	MTR_8g079690	58.757	177	71	2	8	182	2	178	8.20e-68	211
MS.gene014216.t1	MTR_1g117010	60.819	171	56	3	11	177	78	241	2.39e-67	206
MS.gene014216.t1	MTR_1g117010	60.819	171	56	3	11	177	78	241	2.39e-67	206
MS.gene014216.t1	MTR_8g040180	58.857	175	67	4	6	177	13	185	2.18e-66	201
MS.gene014216.t1	MTR_1g085560	66.438	146	42	1	11	156	86	224	3.76e-66	203
MS.gene014216.t1	MTR_7g110980	58.523	176	55	3	11	180	97	260	7.89e-66	202
MS.gene014216.t1	MTR_4g086760	57.386	176	69	3	11	182	5	178	9.47e-64	199
MS.gene014216.t1	MTR_4g086760	57.386	176	69	3	11	182	5	178	1.79e-63	200
MS.gene014216.t1	MTR_4g086760	57.386	176	69	3	11	182	5	178	1.85e-63	199
MS.gene014216.t1	MTR_3g070500	65.672	134	46	0	1	134	55	188	6.69e-61	187
MS.gene014216.t1	MTR_4g073650	53.757	173	79	1	6	177	42	214	1.46e-60	188
MS.gene014216.t1	MTR_3g107660	51.445	173	83	1	9	180	9	181	7.78e-52	178
MS.gene014216.t1	MTR_3g070500	64.220	109	39	0	1	109	55	163	4.24e-46	149
MS.gene014216.t1	MTR_3g070500	63.889	108	39	0	1	108	55	162	7.85e-46	149
MS.gene014216.t1	MTR_1g011980	48.555	173	87	2	9	180	6	177	2.96e-44	156
MS.gene014216.t1	MTR_2g085075	52.027	148	55	5	23	168	470	603	2.81e-35	130
MS.gene014216.t1	MTR_7g105220	50.360	139	53	4	23	158	18	143	5.32e-35	121
MS.gene014216.t1	MTR_8g036015	48.611	144	58	5	23	163	9	139	4.11e-33	116
MS.gene014216.t1	MTR_3g085705	50.877	114	51	3	43	156	7	115	1.79e-29	105
MS.gene014216.t1	MTR_5g015500	48.529	136	58	4	24	158	314	438	1.94e-28	110
MS.gene014216.t1	MTR_5g015500	48.529	136	58	4	24	158	354	478	3.31e-28	110
MS.gene014216.t1	MTR_6g084140	38.824	170	83	6	23	182	9	167	1.13e-22	94.7
MS.gene014216.t1	MTR_6g084140	38.824	170	83	6	23	182	26	184	1.19e-22	94.7
MS.gene014216.t1	MTR_8g442420	38.235	170	84	6	23	182	9	167	1.36e-21	91.7
MS.gene014216.t1	MTR_2g023120	42.742	124	58	5	24	145	22	134	9.12e-18	80.5
MS.gene014216.t1	MTR_1g094065	35.897	156	66	7	24	170	89	219	3.17e-14	68.6
MS.gene014216.t1	MTR_1g035360	29.299	157	93	5	24	177	88	229	1.95e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014216.t1	AT2G16600	83.529	170	28	0	9	178	4	173	6.22e-106	301
MS.gene014216.t1	AT4G38740	80.473	169	33	0	10	178	4	172	2.44e-101	290
MS.gene014216.t1	AT2G21130	78.824	170	36	0	9	178	4	173	2.06e-100	287
MS.gene014216.t1	AT4G34870	79.412	170	35	0	9	178	3	172	1.52e-99	285
MS.gene014216.t1	AT3G56070	72.515	171	47	0	9	179	3	173	1.45e-90	262
MS.gene014216.t1	AT3G56070	72.515	171	47	0	9	179	3	173	1.45e-90	262
MS.gene014216.t1	AT2G16600	71.765	170	26	1	9	178	4	151	7.67e-84	244
MS.gene014216.t1	AT2G29960	67.066	167	55	0	11	177	33	199	1.58e-78	233
MS.gene014216.t1	AT2G29960	67.066	167	55	0	11	177	33	199	1.58e-78	233
MS.gene014216.t1	AT3G63400	66.667	171	56	1	9	178	6	176	8.82e-77	235
MS.gene014216.t1	AT5G58710	65.868	167	57	0	11	177	36	202	1.56e-76	228
MS.gene014216.t1	AT3G63400	66.667	171	56	1	9	178	6	176	4.76e-75	235
MS.gene014216.t1	AT3G63400	66.667	171	56	1	9	178	6	176	4.76e-75	235
MS.gene014216.t1	AT3G63400	66.667	171	56	1	9	178	6	176	4.76e-75	235
MS.gene014216.t1	AT5G13120	62.983	181	56	3	1	177	77	250	2.60e-74	224
MS.gene014216.t1	AT5G13120	62.983	181	56	3	1	177	81	254	4.62e-74	224
MS.gene014216.t1	AT3G55920	61.905	168	64	0	11	178	60	227	3.25e-73	220
MS.gene014216.t1	AT2G29960	62.275	167	53	1	11	177	33	189	2.07e-69	209
MS.gene014216.t1	AT3G62030	58.989	178	65	2	4	180	88	258	8.05e-69	210
MS.gene014216.t1	AT3G62030	58.989	178	65	2	4	180	89	259	8.96e-69	210
MS.gene014216.t1	AT3G62030	58.989	178	65	2	4	180	142	312	3.61e-68	210
MS.gene014216.t1	AT2G15790	60.920	174	66	2	11	182	5	178	5.58e-65	204
MS.gene014216.t1	AT2G38730	58.857	175	67	4	6	177	27	199	6.91e-65	198
MS.gene014216.t1	AT4G34960	54.070	172	78	1	11	181	48	219	2.00e-60	188
MS.gene014216.t1	AT3G22920	53.143	175	70	5	9	179	3	169	5.91e-54	171
MS.gene014216.t1	AT4G34960	55.645	124	55	0	11	134	48	171	8.60e-46	149
MS.gene014216.t1	AT4G32420	47.929	169	87	1	9	176	6	174	9.86e-46	160
MS.gene014216.t1	AT4G32420	47.929	169	87	1	9	176	6	174	9.86e-46	160
MS.gene014216.t1	AT4G32420	47.929	169	87	1	9	176	6	174	9.86e-46	160
MS.gene014216.t1	AT4G32420	47.929	169	87	1	9	176	6	174	9.86e-46	160
MS.gene014216.t1	AT4G32420	48.408	157	80	1	9	164	6	162	2.30e-42	151
MS.gene014216.t1	AT2G36130	48.649	148	62	5	23	169	18	152	1.76e-36	125
MS.gene014216.t1	AT3G44600	51.429	140	54	4	23	160	484	611	6.44e-34	126
MS.gene014216.t1	AT1G01940	48.252	143	60	5	23	163	9	139	7.07e-33	115
MS.gene014216.t1	AT5G67530	45.806	155	65	6	7	158	339	477	7.00e-28	109
MS.gene014216.t1	AT4G33060	45.600	125	55	5	24	146	22	135	1.18e-24	100
MS.gene014216.t1	AT1G53720	38.028	142	68	5	23	155	9	139	1.26e-20	87.8
MS.gene014216.t1	AT1G53720	38.028	142	68	5	23	155	9	139	2.14e-20	88.2

Find 83 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAATTCTCGTCGGCGAATT+TGG	0.117790	3.4:-99998549	None:intergenic
TGGGATTGGGGTTGGGGATG+GGG	0.189257	3.4:-99998277	None:intergenic
TTGGGATTGGGGTTGGGGAT+GGG	0.254630	3.4:-99998278	None:intergenic
AGACTTTGGGATTGGGGTTG+GGG	0.279401	3.4:-99998283	None:intergenic
AAGACTTTGGGATTGGGGTT+GGG	0.281079	3.4:-99998284	None:intergenic
GAGAAAGTTGGGTCCGGTTC+GGG	0.294795	3.4:+99998734	MS.gene014216:CDS
TTTGGGATTGGGGTTGGGGA+TGG	0.340234	3.4:-99998279	None:intergenic
CTCTCCACCGGTACCATTAC+CGG	0.380312	3.4:-99998513	None:intergenic
GGCGAATTTGGACCCGTAGA+TGG	0.381308	3.4:-99998537	None:intergenic
TCGAAGAAGACTTTGGGATT+GGG	0.389727	3.4:-99998290	None:intergenic
GAAGACTTTGGGATTGGGGT+TGG	0.396057	3.4:-99998285	None:intergenic
TGAGAAAGTTGGGTCCGGTT+CGG	0.405741	3.4:+99998733	MS.gene014216:CDS
GTGAAAGAGATTGAGAAAGT+TGG	0.416986	3.4:+99998722	MS.gene014216:CDS
ATGGTAGCTATATATGTTGT+TGG	0.423422	3.4:-99998820	None:intergenic
GTCGAAGAAGACTTTGGGAT+TGG	0.424528	3.4:-99998291	None:intergenic
GTCATGTCGAAGAAGACTTT+GGG	0.428350	3.4:-99998296	None:intergenic
GCAGAGTGCACGGAAGTTAT+CGG	0.432521	3.4:-99998384	None:intergenic
TGGTGAGGTGGTTGAAGGAA+TGG	0.433417	3.4:+99998694	MS.gene014216:CDS
GCGAAGACGGAGTGGCTTGA+TGG	0.435031	3.4:+99998656	MS.gene014216:CDS
CGAAGAAGACTTTGGGATTG+GGG	0.456798	3.4:-99998289	None:intergenic
CCTCCTTGACACATGAAATC+AGG	0.460761	3.4:-99998479	None:intergenic
GGTCATGTCGAAGAAGACTT+TGG	0.463837	3.4:-99998297	None:intergenic
GCACTCTGCACCGGGGAGAA+AGG	0.471854	3.4:+99998398	MS.gene014216:CDS
ACCGGTGGAGAGTCCATCTA+CGG	0.473790	3.4:+99998524	MS.gene014216:CDS
AACTTCCGTGCACTCTGCAC+CGG	0.478449	3.4:+99998389	MS.gene014216:CDS
AGGTCCAGGTGTTCTTTCAA+TGG	0.486279	3.4:+99998586	MS.gene014216:CDS
CTTCATATGCACGGCGAAGA+CGG	0.491522	3.4:+99998643	MS.gene014216:CDS
TGAAAGAGATTGAGAAAGTT+GGG	0.494450	3.4:+99998723	MS.gene014216:CDS
GTTCTTTCAATGGCGAATGC+GGG	0.507071	3.4:+99998596	MS.gene014216:CDS
CGAAGACGGAGTGGCTTGAT+GGG	0.510239	3.4:+99998657	MS.gene014216:CDS
GGTGACTTCACCGCCGGTAA+TGG	0.512626	3.4:+99998500	MS.gene014216:CDS
GATCATTATCATCAGAGAGT+TGG	0.513860	3.4:-99998793	None:intergenic
ATCAAGACCCACACAGGTCC+AGG	0.524358	3.4:+99998572	MS.gene014216:CDS
CATGACCGTCGGAGACGAAC+CGG	0.524784	3.4:+99998313	MS.gene014216:CDS
ACTTCCGTGCACTCTGCACC+GGG	0.526298	3.4:+99998390	MS.gene014216:CDS
GGAAGATAGAGCCTTTGTAA+TGG	0.527764	3.4:-99998445	None:intergenic
GAGATTGAGAAAGTTGGGTC+CGG	0.536951	3.4:+99998728	MS.gene014216:CDS
TTCGCCATTGAAAGAACACC+TGG	0.544494	3.4:-99998590	None:intergenic
TCTCCCCGGTGCAGAGTGCA+CGG	0.546941	3.4:-99998394	None:intergenic
GAACTGTGATCCATTCGTAC+CGG	0.549331	3.4:-99998621	None:intergenic
AACTGTGATCCATTCGTACC+GGG	0.549830	3.4:-99998620	None:intergenic
AATGCGGGACCCGGTACGAA+TGG	0.554826	3.4:+99998611	MS.gene014216:CDS
TGTTCTTTCAATGGCGAATG+CGG	0.558234	3.4:+99998595	MS.gene014216:CDS
TTCACCGCCGGTAATGGTAC+CGG	0.561434	3.4:+99998506	MS.gene014216:CDS
GTCTTCTTCGACATGACCGT+CGG	0.574777	3.4:+99998302	MS.gene014216:CDS
GGCGGTGAGAGGAGTGGTGT+CGG	0.577204	3.4:-99998363	None:intergenic
TCAATGGCGAATGCGGGACC+CGG	0.581965	3.4:+99998602	MS.gene014216:CDS
TCCGACCGGTTCGTCTCCGA+CGG	0.586188	3.4:-99998318	None:intergenic
GGTGGTTGAAGGAATGGAGG+TGG	0.586389	3.4:+99998700	MS.gene014216:CDS
CCGCAGTCAGCAATAACCAC+CGG	0.587692	3.4:-99998770	None:intergenic
TTCGGGGAAAACATCAAAGC+CGG	0.592489	3.4:+99998751	MS.gene014216:CDS
ACCGGTCGGACGTATCGTCA+TGG	0.600041	3.4:+99998331	MS.gene014216:CDS
CGGAAGTTATCGGCGGTGAG+AGG	0.605286	3.4:-99998374	None:intergenic
AGAAAGTTGGGTCCGGTTCG+GGG	0.607170	3.4:+99998735	MS.gene014216:CDS
ATAGAGCCTTTGTAATGGAG+AGG	0.607462	3.4:-99998440	None:intergenic
CCCGTAGATGGACTCTCCAC+CGG	0.607666	3.4:-99998525	None:intergenic
GCTACCGAGTCCTTTCTCCC+CGG	0.607787	3.4:-99998408	None:intergenic
ATACCTGATTTCATGTGTCA+AGG	0.608102	3.4:+99998476	MS.gene014216:CDS
ATCACAGTTCTTCATATGCA+CGG	0.610600	3.4:+99998634	MS.gene014216:CDS
TGAGGTGGTTGAAGGAATGG+AGG	0.611761	3.4:+99998697	MS.gene014216:CDS
GAGAAAGGACTCGGTAGCAG+TGG	0.612151	3.4:+99998413	MS.gene014216:CDS
CAAGGAGGTGACTTCACCGC+CGG	0.614495	3.4:+99998494	MS.gene014216:CDS
ACCGCCGGTAATGGTACCGG+TGG	0.624217	3.4:+99998509	MS.gene014216:CDS
CCGGTGGAGAGTCCATCTAC+GGG	0.638547	3.4:+99998525	MS.gene014216:CDS
AAGAACACCTGGACCTGTGT+GGG	0.644240	3.4:-99998579	None:intergenic
TCCATGACGATACGTCCGAC+CGG	0.645610	3.4:-99998332	None:intergenic
AATTTCATCAAGACCCACAC+AGG	0.645692	3.4:+99998566	MS.gene014216:CDS
GGCAAGCCTCTCCATTACAA+AGG	0.646729	3.4:+99998434	MS.gene014216:CDS
TGCACCGGGGAGAAAGGACT+CGG	0.648211	3.4:+99998404	MS.gene014216:CDS
GGTCTTGATGAAATTCTCGT+CGG	0.653249	3.4:-99998558	None:intergenic
CCTGATTTCATGTGTCAAGG+AGG	0.663642	3.4:+99998479	MS.gene014216:CDS
GTTATCGGCGGTGAGAGGAG+TGG	0.666243	3.4:-99998369	None:intergenic
TATGCACGGCGAAGACGGAG+TGG	0.669618	3.4:+99998648	MS.gene014216:CDS
TGAAATCAGGTATGACGCGG+TGG	0.671849	3.4:-99998466	None:intergenic
GGGGAAAACATCAAAGCCGG+TGG	0.686265	3.4:+99998754	MS.gene014216:CDS
CCGGTGGTTATTGCTGACTG+CGG	0.692364	3.4:+99998770	MS.gene014216:CDS
GTGGCTTGATGGGAAACATG+TGG	0.698636	3.4:+99998667	MS.gene014216:CDS
ACCGTCGGAGACGAACCGGT+CGG	0.705667	3.4:+99998317	MS.gene014216:CDS
TCCACCGGTACCATTACCGG+CGG	0.707753	3.4:-99998510	None:intergenic
AAAGAACACCTGGACCTGTG+TGG	0.718700	3.4:-99998580	None:intergenic
ACATGAAATCAGGTATGACG+CGG	0.735409	3.4:-99998469	None:intergenic
GAGTGCACGGAAGTTATCGG+CGG	0.736092	3.4:-99998381	None:intergenic
CTTCCGTGCACTCTGCACCG+GGG	0.766706	3.4:+99998391	MS.gene014216:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TGAAAGAGATTGAGAAAGTT+GGG	+	chr3.4:99998723-99998742	MS.gene014216:CDS	30.0%
	ATACCTGATTTCATGTGTCA+AGG	+	chr3.4:99998476-99998495	MS.gene014216:CDS	35.0%
	ATCACAGTTCTTCATATGCA+CGG	+	chr3.4:99998634-99998653	MS.gene014216:CDS	35.0%
	GATCATTATCATCAGAGAGT+TGG	-	chr3.4:99998796-99998815	None:intergenic	35.0%
	GTGAAAGAGATTGAGAAAGT+TGG	+	chr3.4:99998722-99998741	MS.gene014216:CDS	35.0%
	AATTTCATCAAGACCCACAC+AGG	+	chr3.4:99998566-99998585	MS.gene014216:CDS	40.0%
	ACATGAAATCAGGTATGACG+CGG	-	chr3.4:99998472-99998491	None:intergenic	40.0%
	GGAAGATAGAGCCTTTGTAA+TGG	-	chr3.4:99998448-99998467	None:intergenic	40.0%
	GGTCTTGATGAAATTCTCGT+CGG	-	chr3.4:99998561-99998580	None:intergenic	40.0%
	GTCATGTCGAAGAAGACTTT+GGG	-	chr3.4:99998299-99998318	None:intergenic	40.0%
	TGTTCTTTCAATGGCGAATG+CGG	+	chr3.4:99998595-99998614	MS.gene014216:CDS	40.0%
!	ATAGAGCCTTTGTAATGGAG+AGG	-	chr3.4:99998443-99998462	None:intergenic	40.0%
!	GATGGGAAACATGTGGTTTT+TGG	+	chr3.4:99998674-99998693	MS.gene014216:CDS	40.0%
!!	TCGAAGAAGACTTTGGGATT+GGG	-	chr3.4:99998293-99998312	None:intergenic	40.0%
!!!	GAAACATGTGGTTTTTGGTG+AGG	+	chr3.4:99998679-99998698	MS.gene014216:CDS	40.0%
	AACTGTGATCCATTCGTACC+GGG	-	chr3.4:99998623-99998642	None:intergenic	45.0%
	AGGTCCAGGTGTTCTTTCAA+TGG	+	chr3.4:99998586-99998605	MS.gene014216:CDS	45.0%
	CCTCCTTGACACATGAAATC+AGG	-	chr3.4:99998482-99998501	None:intergenic	45.0%
	CCTGATTTCATGTGTCAAGG+AGG	+	chr3.4:99998479-99998498	MS.gene014216:CDS	45.0%
	GAAATTCTCGTCGGCGAATT+TGG	-	chr3.4:99998552-99998571	None:intergenic	45.0%
	GAACTGTGATCCATTCGTAC+CGG	-	chr3.4:99998624-99998643	None:intergenic	45.0%
	GAGATTGAGAAAGTTGGGTC+CGG	+	chr3.4:99998728-99998747	MS.gene014216:CDS	45.0%
	GGTCATGTCGAAGAAGACTT+TGG	-	chr3.4:99998300-99998319	None:intergenic	45.0%
	GTTCTTTCAATGGCGAATGC+GGG	+	chr3.4:99998596-99998615	MS.gene014216:CDS	45.0%
	TTCGCCATTGAAAGAACACC+TGG	-	chr3.4:99998593-99998612	None:intergenic	45.0%
	TTCGGGGAAAACATCAAAGC+CGG	+	chr3.4:99998751-99998770	MS.gene014216:CDS	45.0%
!	CTTTGATGTTTTCCCCGAAC+CGG	-	chr3.4:99998750-99998769	None:intergenic	45.0%
!!	AAGACTTTGGGATTGGGGTT+GGG	-	chr3.4:99998287-99998306	None:intergenic	45.0%
!!	CGAAGAAGACTTTGGGATTG+GGG	-	chr3.4:99998292-99998311	None:intergenic	45.0%
!!	GTCGAAGAAGACTTTGGGAT+TGG	-	chr3.4:99998294-99998313	None:intergenic	45.0%
!!!	ACATGTGGTTTTTGGTGAGG+TGG	+	chr3.4:99998682-99998701	MS.gene014216:CDS	45.0%
!!!	GTTTTTGGTGAGGTGGTTGA+AGG	+	chr3.4:99998689-99998708	MS.gene014216:CDS	45.0%
	AAAGAACACCTGGACCTGTG+TGG	-	chr3.4:99998583-99998602	None:intergenic	50.0%
	AAGAACACCTGGACCTGTGT+GGG	-	chr3.4:99998582-99998601	None:intergenic	50.0%
	CTTCATATGCACGGCGAAGA+CGG	+	chr3.4:99998643-99998662	MS.gene014216:CDS	50.0%
	GCAGAGTGCACGGAAGTTAT+CGG	-	chr3.4:99998387-99998406	None:intergenic	50.0%
	GGCAAGCCTCTCCATTACAA+AGG	+	chr3.4:99998434-99998453	MS.gene014216:CDS	50.0%
	GTCTTCTTCGACATGACCGT+CGG	+	chr3.4:99998302-99998321	MS.gene014216:CDS	50.0%
	GTGGCTTGATGGGAAACATG+TGG	+	chr3.4:99998667-99998686	MS.gene014216:CDS	50.0%
	TGAAATCAGGTATGACGCGG+TGG	-	chr3.4:99998469-99998488	None:intergenic	50.0%
	TGAGAAAGTTGGGTCCGGTT+CGG	+	chr3.4:99998733-99998752	MS.gene014216:CDS	50.0%
	TGAGGTGGTTGAAGGAATGG+AGG	+	chr3.4:99998697-99998716	MS.gene014216:CDS	50.0%
	TGGTGAGGTGGTTGAAGGAA+TGG	+	chr3.4:99998694-99998713	MS.gene014216:CDS	50.0%
!!	AGACTTTGGGATTGGGGTTG+GGG	-	chr3.4:99998286-99998305	None:intergenic	50.0%
!!	GAAGACTTTGGGATTGGGGT+TGG	-	chr3.4:99998288-99998307	None:intergenic	50.0%
	AACTTCCGTGCACTCTGCAC+CGG	+	chr3.4:99998389-99998408	MS.gene014216:CDS	55.0%
	ACCGGTGGAGAGTCCATCTA+CGG	+	chr3.4:99998524-99998543	MS.gene014216:CDS	55.0%
	ATCAAGACCCACACAGGTCC+AGG	+	chr3.4:99998572-99998591	MS.gene014216:CDS	55.0%
	CCGCAGTCAGCAATAACCAC+CGG	-	chr3.4:99998773-99998792	None:intergenic	55.0%
	CGAAGACGGAGTGGCTTGAT+GGG	+	chr3.4:99998657-99998676	MS.gene014216:CDS	55.0%
	CTCTCCACCGGTACCATTAC+CGG	-	chr3.4:99998516-99998535	None:intergenic	55.0%
	GAGAAAGTTGGGTCCGGTTC+GGG	+	chr3.4:99998734-99998753	MS.gene014216:CDS	55.0%
	GAGTGCACGGAAGTTATCGG+CGG	-	chr3.4:99998384-99998403	None:intergenic	55.0%
	GGCGAATTTGGACCCGTAGA+TGG	-	chr3.4:99998540-99998559	None:intergenic	55.0%
	GGGGAAAACATCAAAGCCGG+TGG	+	chr3.4:99998754-99998773	MS.gene014216:CDS	55.0%
	GGTGGTTGAAGGAATGGAGG+TGG	+	chr3.4:99998700-99998719	MS.gene014216:CDS	55.0%
	TCCATGACGATACGTCCGAC+CGG	-	chr3.4:99998335-99998354	None:intergenic	55.0%
	TTGGGATTGGGGTTGGGGAT+GGG	-	chr3.4:99998281-99998300	None:intergenic	55.0%
!	AGAAAGTTGGGTCCGGTTCG+GGG	+	chr3.4:99998735-99998754	MS.gene014216:CDS	55.0%
!	CCGGTGGTTATTGCTGACTG+CGG	+	chr3.4:99998770-99998789	MS.gene014216:CDS	55.0%
!	GAGAAAGGACTCGGTAGCAG+TGG	+	chr3.4:99998413-99998432	MS.gene014216:CDS	55.0%
!	TTCACCGCCGGTAATGGTAC+CGG	+	chr3.4:99998506-99998525	MS.gene014216:CDS	55.0%
!	TTTGGGATTGGGGTTGGGGA+TGG	-	chr3.4:99998282-99998301	None:intergenic	55.0%
	AATGCGGGACCCGGTACGAA+TGG	+	chr3.4:99998611-99998630	MS.gene014216:CDS	60.0%
	ACCGGTCGGACGTATCGTCA+TGG	+	chr3.4:99998331-99998350	MS.gene014216:CDS	60.0%
	ACTTCCGTGCACTCTGCACC+GGG	+	chr3.4:99998390-99998409	MS.gene014216:CDS	60.0%
	CAAGGAGGTGACTTCACCGC+CGG	+	chr3.4:99998494-99998513	MS.gene014216:CDS	60.0%
	CATGACCGTCGGAGACGAAC+CGG	+	chr3.4:99998313-99998332	MS.gene014216:CDS	60.0%
	CCGGTGGAGAGTCCATCTAC+GGG	+	chr3.4:99998525-99998544	MS.gene014216:CDS	60.0%
	CGGAAGTTATCGGCGGTGAG+AGG	-	chr3.4:99998377-99998396	None:intergenic	60.0%
	GCGAAGACGGAGTGGCTTGA+TGG	+	chr3.4:99998656-99998675	MS.gene014216:CDS	60.0%
	GCTACCGAGTCCTTTCTCCC+CGG	-	chr3.4:99998411-99998430	None:intergenic	60.0%
	GGTGACTTCACCGCCGGTAA+TGG	+	chr3.4:99998500-99998519	MS.gene014216:CDS	60.0%
	GTTATCGGCGGTGAGAGGAG+TGG	-	chr3.4:99998372-99998391	None:intergenic	60.0%
	TATGCACGGCGAAGACGGAG+TGG	+	chr3.4:99998648-99998667	MS.gene014216:CDS	60.0%
	TCAATGGCGAATGCGGGACC+CGG	+	chr3.4:99998602-99998621	MS.gene014216:CDS	60.0%
	TCCACCGGTACCATTACCGG+CGG	-	chr3.4:99998513-99998532	None:intergenic	60.0%
	TGCACCGGGGAGAAAGGACT+CGG	+	chr3.4:99998404-99998423	MS.gene014216:CDS	60.0%
	TGGGATTGGGGTTGGGGATG+GGG	-	chr3.4:99998280-99998299	None:intergenic	60.0%
!	CCCGTAGATGGACTCTCCAC+CGG	-	chr3.4:99998528-99998547	None:intergenic	60.0%
	ACCGTCGGAGACGAACCGGT+CGG	+	chr3.4:99998317-99998336	MS.gene014216:CDS	65.0%
	CTTCCGTGCACTCTGCACCG+GGG	+	chr3.4:99998391-99998410	MS.gene014216:CDS	65.0%
	GCACTCTGCACCGGGGAGAA+AGG	+	chr3.4:99998398-99998417	MS.gene014216:CDS	65.0%
	GGCGGTGAGAGGAGTGGTGT+CGG	-	chr3.4:99998366-99998385	None:intergenic	65.0%
	TCTCCCCGGTGCAGAGTGCA+CGG	-	chr3.4:99998397-99998416	None:intergenic	65.0%
!	ACCGCCGGTAATGGTACCGG+TGG	+	chr3.4:99998509-99998528	MS.gene014216:CDS	65.0%
!!	TCCGACCGGTTCGTCTCCGA+CGG	-	chr3.4:99998321-99998340	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	99998269	99998835	99998269	ID=MS.gene014216
chr3.4	mRNA	99998269	99998835	99998269	ID=MS.gene014216.t1;Parent=MS.gene014216
chr3.4	exon	99998269	99998835	99998269	ID=MS.gene014216.t1.exon1;Parent=MS.gene014216.t1
chr3.4	CDS	99998269	99998835	99998269	ID=cds.MS.gene014216.t1;Parent=MS.gene014216.t1

Gene Sequence

>MS.gene014216

ATGTCTAACCCCATCCCCAACCCCAATCCCAAAGTCTTCTTCGACATGACCGTCGGAGACGAACCGGTCGGACGTATCGTCATGGAACTTTACGCCGACACCACTCCTCTCACCGCCGATAACTTCCGTGCACTCTGCACCGGGGAGAAAGGACTCGGTAGCAGTGGCAAGCCTCTCCATTACAAAGGCTCTATCTTCCACCGCGTCATACCTGATTTCATGTGTCAAGGAGGTGACTTCACCGCCGGTAATGGTACCGGTGGAGAGTCCATCTACGGGTCCAAATTCGCCGACGAGAATTTCATCAAGACCCACACAGGTCCAGGTGTTCTTTCAATGGCGAATGCGGGACCCGGTACGAATGGATCACAGTTCTTCATATGCACGGCGAAGACGGAGTGGCTTGATGGGAAACATGTGGTTTTTGGTGAGGTGGTTGAAGGAATGGAGGTGGTGAAAGAGATTGAGAAAGTTGGGTCCGGTTCGGGGAAAACATCAAAGCCGGTGGTTATTGCTGACTGCGGCCAACTCTCTGATGATAATGATCTTAACCAACAACATATATAG

Protein sequence

>MS.gene014216.t1

MSNPIPNPNPKVFFDMTVGDEPVGRIVMELYADTTPLTADNFRALCTGEKGLGSSGKPLHYKGSIFHRVIPDFMCQGGDFTAGNGTGGESIYGSKFADENFIKTHTGPGVLSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGEVVEGMEVVKEIEKVGSGSGKTSKPVVIADCGQLSDDNDLNQQHI