Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025980.t1 | ACJ86207.1 | 98.8 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 2.70E-95 | 357.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025980.t1 | Q38867 | 83.6 | 171 | 28 | 0 | 1 | 171 | 1 | 171 | 2.1e-83 | 309.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025980.t1 | B7FN74 | 98.8 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 2.0e-95 | 357.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene025980 | MS.gene04515 | PPI |
MS.gene025980 | MS.gene052269 | PPI |
MS.gene025980 | MS.gene68153 | PPI |
MS.gene025980 | MS.gene04526 | PPI |
MS.gene025980 | MS.gene68752 | PPI |
MS.gene025980 | MS.gene019366 | PPI |
MS.gene025980 | MS.gene050281 | PPI |
MS.gene025980 | MS.gene28703 | PPI |
MS.gene39668 | MS.gene025980 | PPI |
MS.gene025980 | MS.gene28963 | PPI |
MS.gene68752 | MS.gene025980 | PPI |
MS.gene88451 | MS.gene025980 | PPI |
MS.gene025980 | MS.gene23663 | PPI |
MS.gene025980 | MS.gene39668 | PPI |
MS.gene025980 | MS.gene063787 | PPI |
MS.gene025980 | MS.gene007179 | PPI |
MS.gene025980 | MS.gene61767 | PPI |
MS.gene025980 | MS.gene23546 | PPI |
MS.gene68153 | MS.gene025980 | PPI |
MS.gene025980 | MS.gene014216 | PPI |
MS.gene025980 | MS.gene052266 | PPI |
MS.gene025980 | MS.gene063104 | PPI |
MS.gene025980 | MS.gene051153 | PPI |
MS.gene025980 | MS.gene003412 | PPI |
MS.gene025980 | MS.gene048458 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025980.t1 | MTR_7g116340 | 98.256 | 172 | 3 | 0 | 1 | 172 | 1 | 172 | 6.74e-126 | 351 |
MS.gene025980.t1 | MTR_4g075290 | 77.326 | 172 | 39 | 0 | 1 | 172 | 1 | 172 | 1.87e-100 | 286 |
MS.gene025980.t1 | MTR_3g117750 | 76.190 | 168 | 40 | 0 | 5 | 172 | 13 | 180 | 1.62e-95 | 275 |
MS.gene025980.t1 | MTR_3g463900 | 69.461 | 167 | 51 | 0 | 5 | 171 | 35 | 201 | 4.29e-84 | 246 |
MS.gene025980.t1 | MTR_3g070500 | 67.857 | 168 | 54 | 0 | 5 | 172 | 65 | 232 | 6.70e-82 | 242 |
MS.gene025980.t1 | MTR_7g095750 | 64.912 | 171 | 59 | 1 | 3 | 172 | 6 | 176 | 1.78e-76 | 240 |
MS.gene025980.t1 | MTR_8g079690 | 64.000 | 175 | 59 | 3 | 1 | 172 | 1 | 174 | 7.88e-72 | 221 |
MS.gene025980.t1 | MTR_1g085560 | 68.493 | 146 | 39 | 1 | 5 | 150 | 86 | 224 | 1.87e-69 | 211 |
MS.gene025980.t1 | MTR_1g117010 | 59.649 | 171 | 58 | 3 | 5 | 171 | 78 | 241 | 2.73e-67 | 205 |
MS.gene025980.t1 | MTR_1g117010 | 59.649 | 171 | 58 | 3 | 5 | 171 | 78 | 241 | 2.73e-67 | 205 |
MS.gene025980.t1 | MTR_8g040180 | 59.064 | 171 | 66 | 3 | 3 | 171 | 17 | 185 | 3.47e-66 | 200 |
MS.gene025980.t1 | MTR_7g110980 | 65.753 | 146 | 43 | 1 | 5 | 150 | 97 | 235 | 9.02e-66 | 202 |
MS.gene025980.t1 | MTR_4g086760 | 59.538 | 173 | 68 | 2 | 1 | 171 | 1 | 173 | 9.20e-65 | 201 |
MS.gene025980.t1 | MTR_4g086760 | 59.538 | 173 | 68 | 2 | 1 | 171 | 1 | 173 | 9.49e-65 | 201 |
MS.gene025980.t1 | MTR_4g086760 | 59.538 | 173 | 68 | 2 | 1 | 171 | 1 | 173 | 1.06e-64 | 202 |
MS.gene025980.t1 | MTR_3g070500 | 74.194 | 124 | 32 | 0 | 5 | 128 | 65 | 188 | 1.15e-64 | 196 |
MS.gene025980.t1 | MTR_4g073650 | 54.762 | 168 | 75 | 1 | 5 | 171 | 47 | 214 | 1.05e-62 | 193 |
MS.gene025980.t1 | MTR_3g107660 | 53.254 | 169 | 78 | 1 | 3 | 170 | 9 | 177 | 2.32e-51 | 176 |
MS.gene025980.t1 | MTR_3g070500 | 73.737 | 99 | 26 | 0 | 5 | 103 | 65 | 163 | 4.82e-49 | 156 |
MS.gene025980.t1 | MTR_3g070500 | 73.469 | 98 | 26 | 0 | 5 | 102 | 65 | 162 | 7.18e-49 | 155 |
MS.gene025980.t1 | MTR_1g011980 | 51.479 | 169 | 80 | 2 | 3 | 170 | 6 | 173 | 1.42e-47 | 164 |
MS.gene025980.t1 | MTR_2g085075 | 51.034 | 145 | 59 | 3 | 11 | 154 | 464 | 597 | 6.73e-37 | 134 |
MS.gene025980.t1 | MTR_7g105220 | 49.286 | 140 | 59 | 4 | 18 | 156 | 19 | 147 | 8.62e-37 | 125 |
MS.gene025980.t1 | MTR_8g036015 | 52.206 | 136 | 53 | 3 | 18 | 152 | 10 | 134 | 1.83e-36 | 124 |
MS.gene025980.t1 | MTR_5g015500 | 49.333 | 150 | 63 | 5 | 18 | 165 | 314 | 452 | 3.06e-32 | 120 |
MS.gene025980.t1 | MTR_5g015500 | 49.333 | 150 | 63 | 5 | 18 | 165 | 354 | 492 | 4.62e-32 | 120 |
MS.gene025980.t1 | MTR_3g085705 | 60.638 | 94 | 32 | 3 | 57 | 150 | 27 | 115 | 1.48e-31 | 110 |
MS.gene025980.t1 | MTR_2g023120 | 46.825 | 126 | 50 | 5 | 18 | 139 | 22 | 134 | 1.32e-21 | 90.9 |
MS.gene025980.t1 | MTR_6g084140 | 34.591 | 159 | 83 | 5 | 18 | 166 | 27 | 174 | 6.16e-21 | 89.4 |
MS.gene025980.t1 | MTR_6g084140 | 34.591 | 159 | 83 | 5 | 18 | 166 | 10 | 157 | 6.86e-21 | 89.0 |
MS.gene025980.t1 | MTR_8g442420 | 33.962 | 159 | 84 | 5 | 18 | 166 | 10 | 157 | 1.19e-19 | 85.5 |
MS.gene025980.t1 | MTR_4g111720 | 25.907 | 193 | 98 | 4 | 5 | 160 | 100 | 284 | 2.28e-12 | 63.9 |
MS.gene025980.t1 | MTR_1g035360 | 30.556 | 144 | 83 | 6 | 12 | 154 | 82 | 209 | 3.23e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025980.t1 | AT3G56070 | 83.626 | 171 | 28 | 0 | 1 | 171 | 1 | 171 | 2.03e-107 | 304 |
MS.gene025980.t1 | AT3G56070 | 83.626 | 171 | 28 | 0 | 1 | 171 | 1 | 171 | 2.03e-107 | 304 |
MS.gene025980.t1 | AT2G16600 | 78.947 | 171 | 36 | 0 | 2 | 172 | 3 | 173 | 2.16e-100 | 286 |
MS.gene025980.t1 | AT2G21130 | 77.193 | 171 | 39 | 0 | 2 | 172 | 3 | 173 | 3.66e-99 | 283 |
MS.gene025980.t1 | AT4G38740 | 74.419 | 172 | 44 | 0 | 1 | 172 | 1 | 172 | 4.80e-96 | 275 |
MS.gene025980.t1 | AT4G34870 | 75.000 | 172 | 43 | 0 | 1 | 172 | 1 | 172 | 8.68e-95 | 272 |
MS.gene025980.t1 | AT2G29960 | 70.060 | 167 | 50 | 0 | 5 | 171 | 33 | 199 | 1.08e-84 | 248 |
MS.gene025980.t1 | AT2G29960 | 70.060 | 167 | 50 | 0 | 5 | 171 | 33 | 199 | 1.08e-84 | 248 |
MS.gene025980.t1 | AT5G58710 | 69.461 | 167 | 51 | 0 | 5 | 171 | 36 | 202 | 2.09e-81 | 239 |
MS.gene025980.t1 | AT2G16600 | 67.836 | 171 | 33 | 1 | 2 | 172 | 3 | 151 | 4.40e-78 | 229 |
MS.gene025980.t1 | AT3G55920 | 64.881 | 168 | 59 | 0 | 5 | 172 | 60 | 227 | 1.00e-77 | 231 |
MS.gene025980.t1 | AT3G63400 | 65.497 | 171 | 58 | 1 | 3 | 172 | 6 | 176 | 7.51e-76 | 232 |
MS.gene025980.t1 | AT2G29960 | 65.269 | 167 | 48 | 1 | 5 | 171 | 33 | 189 | 3.21e-75 | 223 |
MS.gene025980.t1 | AT3G63400 | 65.497 | 171 | 58 | 1 | 3 | 172 | 6 | 176 | 4.42e-74 | 232 |
MS.gene025980.t1 | AT3G63400 | 65.497 | 171 | 58 | 1 | 3 | 172 | 6 | 176 | 4.42e-74 | 232 |
MS.gene025980.t1 | AT3G63400 | 65.497 | 171 | 58 | 1 | 3 | 172 | 6 | 176 | 4.42e-74 | 232 |
MS.gene025980.t1 | AT5G13120 | 61.988 | 171 | 54 | 3 | 5 | 171 | 91 | 254 | 6.79e-72 | 218 |
MS.gene025980.t1 | AT5G13120 | 61.988 | 171 | 54 | 3 | 5 | 171 | 87 | 250 | 7.06e-72 | 217 |
MS.gene025980.t1 | AT3G62030 | 69.863 | 146 | 37 | 1 | 5 | 150 | 95 | 233 | 1.00e-69 | 212 |
MS.gene025980.t1 | AT3G62030 | 69.863 | 146 | 37 | 1 | 5 | 150 | 96 | 234 | 1.03e-69 | 212 |
MS.gene025980.t1 | AT3G62030 | 69.863 | 146 | 37 | 1 | 5 | 150 | 149 | 287 | 5.15e-69 | 212 |
MS.gene025980.t1 | AT2G15790 | 61.272 | 173 | 65 | 2 | 1 | 171 | 1 | 173 | 2.40e-67 | 209 |
MS.gene025980.t1 | AT2G38730 | 59.649 | 171 | 65 | 3 | 3 | 171 | 31 | 199 | 1.43e-65 | 199 |
MS.gene025980.t1 | AT4G34960 | 53.571 | 168 | 77 | 1 | 5 | 171 | 48 | 215 | 1.63e-61 | 190 |
MS.gene025980.t1 | AT3G22920 | 55.114 | 176 | 67 | 6 | 1 | 172 | 1 | 168 | 6.52e-54 | 171 |
MS.gene025980.t1 | AT4G34960 | 55.645 | 124 | 55 | 0 | 5 | 128 | 48 | 171 | 4.97e-48 | 154 |
MS.gene025980.t1 | AT4G32420 | 49.112 | 169 | 85 | 1 | 3 | 170 | 6 | 174 | 1.81e-47 | 165 |
MS.gene025980.t1 | AT4G32420 | 49.112 | 169 | 85 | 1 | 3 | 170 | 6 | 174 | 1.81e-47 | 165 |
MS.gene025980.t1 | AT4G32420 | 49.112 | 169 | 85 | 1 | 3 | 170 | 6 | 174 | 1.81e-47 | 165 |
MS.gene025980.t1 | AT4G32420 | 49.112 | 169 | 85 | 1 | 3 | 170 | 6 | 174 | 1.81e-47 | 165 |
MS.gene025980.t1 | AT4G32420 | 49.682 | 157 | 78 | 1 | 3 | 158 | 6 | 162 | 3.06e-44 | 155 |
MS.gene025980.t1 | AT2G36130 | 50.000 | 140 | 58 | 4 | 18 | 156 | 19 | 147 | 1.07e-37 | 127 |
MS.gene025980.t1 | AT3G44600 | 49.045 | 157 | 67 | 4 | 11 | 165 | 478 | 623 | 2.56e-37 | 135 |
MS.gene025980.t1 | AT1G01940 | 52.206 | 136 | 53 | 3 | 18 | 152 | 10 | 134 | 3.37e-37 | 126 |
MS.gene025980.t1 | AT5G67530 | 48.667 | 150 | 64 | 5 | 18 | 165 | 353 | 491 | 4.06e-32 | 120 |
MS.gene025980.t1 | AT4G33060 | 47.200 | 125 | 53 | 4 | 18 | 140 | 22 | 135 | 8.49e-28 | 108 |
MS.gene025980.t1 | AT1G53720 | 39.130 | 138 | 64 | 5 | 18 | 146 | 10 | 136 | 9.34e-21 | 87.8 |
MS.gene025980.t1 | AT1G53720 | 39.130 | 138 | 64 | 5 | 18 | 146 | 10 | 136 | 1.31e-20 | 88.2 |
Find 46 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGGAAAGCATGTTGTATT+TGG | 0.221121 | 7.1:+1656680 | MS.gene025980:CDS |
ATTCTTTCCATGGCAAATTC+TGG | 0.225996 | 7.1:+1656602 | MS.gene025980:CDS |
ACTGGAGGAGAGTCTATATA+TGG | 0.292463 | 7.1:+1656530 | MS.gene025980:CDS |
GAGAAGGTTGGTTCACAAAA+TGG | 0.318577 | 7.1:+1656740 | MS.gene025980:CDS |
GGTAAACCTTTACACTATAA+AGG | 0.338627 | 7.1:+1656440 | MS.gene025980:CDS |
CCTTTACACTATAAAGGTTC+TGG | 0.340990 | 7.1:+1656446 | MS.gene025980:CDS |
AGAATATCAAAGAAAACCTT+TGG | 0.366302 | 7.1:-1656302 | None:intergenic |
ATCAAGCCATTCAGTCTTTG+AGG | 0.392504 | 7.1:-1656660 | None:intergenic |
TGCACAGGAGAAAGGGGTAT+TGG | 0.393886 | 7.1:+1656410 | MS.gene025980:CDS |
TCAAAGACTGAATGGCTTGA+TGG | 0.394746 | 7.1:+1656662 | MS.gene025980:CDS |
GCACAGGAGAAAGGGGTATT+GGG | 0.401126 | 7.1:+1656411 | MS.gene025980:CDS |
AACTGAGAACCATTAGTATT+GGG | 0.402674 | 7.1:-1656626 | None:intergenic |
AATTTCAAGCTGAAGCATAC+TGG | 0.411931 | 7.1:+1656572 | MS.gene025980:CDS |
CGAAGGATACGATGTAGTTC+AGG | 0.437134 | 7.1:+1656712 | MS.gene025980:CDS |
CCAGAACCTTTATAGTGTAA+AGG | 0.437419 | 7.1:-1656446 | None:intergenic |
AAACTGAGAACCATTAGTAT+TGG | 0.443961 | 7.1:-1656627 | None:intergenic |
TTTGTACCTCAAAGACTGAA+TGG | 0.448049 | 7.1:+1656654 | MS.gene025980:CDS |
TTTACCAAAGGGAATGGTAC+TGG | 0.450711 | 7.1:+1656512 | MS.gene025980:CDS |
AATTCTGGACCCAATACTAA+TGG | 0.454102 | 7.1:+1656617 | MS.gene025980:CDS |
GGCACTCTGCACAGGAGAAA+GGG | 0.455813 | 7.1:+1656403 | MS.gene025980:CDS |
TCCTCCAGTACCATTCCCTT+TGG | 0.468424 | 7.1:-1656516 | None:intergenic |
GGGCACTCTGCACAGGAGAA+AGG | 0.484529 | 7.1:+1656402 | MS.gene025980:CDS |
GCATGTTGTATTTGGAAAAG+TGG | 0.496708 | 7.1:+1656688 | MS.gene025980:CDS |
AAATGGTAGGACATCAGAAC+AGG | 0.503914 | 7.1:+1656757 | MS.gene025980:CDS |
ATTCCAGAGTTTATGTGTCA+AGG | 0.523820 | 7.1:+1656482 | MS.gene025980:CDS |
TTGTGAACCAACCTTCTCCA+TGG | 0.533815 | 7.1:-1656735 | None:intergenic |
TGTAACCATGTCAAATCCAA+AGG | 0.535644 | 7.1:+1656286 | None:intergenic |
CTAATTGGAAGAATGAAAGC+TGG | 0.537372 | 7.1:+1656323 | MS.gene025980:CDS |
TGGACCTGGTATTCTTTCCA+TGG | 0.538902 | 7.1:+1656592 | MS.gene025980:CDS |
CCTCCTTGACACATAAACTC+TGG | 0.550153 | 7.1:-1656485 | None:intergenic |
CTGGAGGAGAGTCTATATAT+GGG | 0.556827 | 7.1:+1656531 | MS.gene025980:CDS |
AAGCTGAAGCATACTGGACC+TGG | 0.564886 | 7.1:+1656578 | MS.gene025980:CDS |
ATACGATGTAGTTCAGGCCA+TGG | 0.568695 | 7.1:+1656718 | MS.gene025980:CDS |
TGTAGTTCAGGCCATGGAGA+AGG | 0.577243 | 7.1:+1656724 | MS.gene025980:CDS |
GAAAGCTGGAAAGATAGTAA+TGG | 0.582740 | 7.1:+1656337 | MS.gene025980:CDS |
TTTGCCATGGAAAGAATACC+AGG | 0.593087 | 7.1:-1656596 | None:intergenic |
GTTCAGGCCATGGAGAAGGT+TGG | 0.594001 | 7.1:+1656728 | MS.gene025980:CDS |
GAAAACCTTTGGATTTGACA+TGG | 0.607760 | 7.1:-1656291 | None:intergenic |
GTATTTGGAAAAGTGGTCGA+AGG | 0.607981 | 7.1:+1656695 | MS.gene025980:CDS |
ATTGGGTCCAGAATTTGCCA+TGG | 0.609063 | 7.1:-1656609 | None:intergenic |
CAGGTTGTCATCGAAGATTG+TGG | 0.618674 | 7.1:+1656776 | MS.gene025980:CDS |
AGGTTGGTTCACAAAATGGT+AGG | 0.628168 | 7.1:+1656744 | MS.gene025980:CDS |
GCACTCTGCACAGGAGAAAG+GGG | 0.634116 | 7.1:+1656404 | MS.gene025980:CDS |
ACCAAAGGGAATGGTACTGG+AGG | 0.652379 | 7.1:+1656515 | MS.gene025980:CDS |
GAAAGGGGTATTGGGCAATG+CGG | 0.661531 | 7.1:+1656419 | MS.gene025980:CDS |
CCAGAGTTTATGTGTCAAGG+AGG | 0.669137 | 7.1:+1656485 | MS.gene025980:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAACAGCTGAAAATTTTA+GGG | + | chr7.1:1656382-1656401 | MS.gene025980:CDS | 20.0% |
!!! | GTTTTCTTTGATATTCTAAT+TGG | + | chr7.1:1656308-1656327 | MS.gene025980:CDS | 20.0% |
!!! | TAAAATTTTCAGCTGTTTTT+GGG | - | chr7.1:1656382-1656401 | None:intergenic | 20.0% |
! | AGAATATCAAAGAAAACCTT+TGG | - | chr7.1:1656305-1656324 | None:intergenic | 25.0% |
!! | CAAAAACAGCTGAAAATTTT+AGG | + | chr7.1:1656381-1656400 | MS.gene025980:CDS | 25.0% |
!!! | AAAATTTTCAGCTGTTTTTG+GGG | - | chr7.1:1656381-1656400 | None:intergenic | 25.0% |
!!! | CTAAAATTTTCAGCTGTTTT+TGG | - | chr7.1:1656383-1656402 | None:intergenic | 25.0% |
AAACTGAGAACCATTAGTAT+TGG | - | chr7.1:1656630-1656649 | None:intergenic | 30.0% | |
AACTGAGAACCATTAGTATT+GGG | - | chr7.1:1656629-1656648 | None:intergenic | 30.0% | |
GGTAAACCTTTACACTATAA+AGG | + | chr7.1:1656440-1656459 | MS.gene025980:CDS | 30.0% | |
AATTCTGGACCCAATACTAA+TGG | + | chr7.1:1656617-1656636 | MS.gene025980:CDS | 35.0% | |
AATTTCAAGCTGAAGCATAC+TGG | + | chr7.1:1656572-1656591 | MS.gene025980:CDS | 35.0% | |
ATTCCAGAGTTTATGTGTCA+AGG | + | chr7.1:1656482-1656501 | MS.gene025980:CDS | 35.0% | |
ATTCTTTCCATGGCAAATTC+TGG | + | chr7.1:1656602-1656621 | MS.gene025980:CDS | 35.0% | |
CCAGAACCTTTATAGTGTAA+AGG | - | chr7.1:1656449-1656468 | None:intergenic | 35.0% | |
CCTTTACACTATAAAGGTTC+TGG | + | chr7.1:1656446-1656465 | MS.gene025980:CDS | 35.0% | |
CTAATTGGAAGAATGAAAGC+TGG | + | chr7.1:1656323-1656342 | MS.gene025980:CDS | 35.0% | |
GAAAGCTGGAAAGATAGTAA+TGG | + | chr7.1:1656337-1656356 | MS.gene025980:CDS | 35.0% | |
GCATGTTGTATTTGGAAAAG+TGG | + | chr7.1:1656688-1656707 | MS.gene025980:CDS | 35.0% | |
TTTGTACCTCAAAGACTGAA+TGG | + | chr7.1:1656654-1656673 | MS.gene025980:CDS | 35.0% | |
! | AAGGAGGAGATTTTACCAAA+GGG | + | chr7.1:1656501-1656520 | MS.gene025980:CDS | 35.0% |
! | GATGGAAAGCATGTTGTATT+TGG | + | chr7.1:1656680-1656699 | MS.gene025980:CDS | 35.0% |
AAATGGTAGGACATCAGAAC+AGG | + | chr7.1:1656757-1656776 | MS.gene025980:CDS | 40.0% | |
ACTGGAGGAGAGTCTATATA+TGG | + | chr7.1:1656530-1656549 | MS.gene025980:CDS | 40.0% | |
ATCAAGCCATTCAGTCTTTG+AGG | - | chr7.1:1656663-1656682 | None:intergenic | 40.0% | |
CTGGAGGAGAGTCTATATAT+GGG | + | chr7.1:1656531-1656550 | MS.gene025980:CDS | 40.0% | |
GTATTTGGAAAAGTGGTCGA+AGG | + | chr7.1:1656695-1656714 | MS.gene025980:CDS | 40.0% | |
TCAAAGACTGAATGGCTTGA+TGG | + | chr7.1:1656662-1656681 | MS.gene025980:CDS | 40.0% | |
TTTACCAAAGGGAATGGTAC+TGG | + | chr7.1:1656512-1656531 | MS.gene025980:CDS | 40.0% | |
TTTGCCATGGAAAGAATACC+AGG | - | chr7.1:1656599-1656618 | None:intergenic | 40.0% | |
! | AGGTTGGTTCACAAAATGGT+AGG | + | chr7.1:1656744-1656763 | MS.gene025980:CDS | 40.0% |
! | CAAGGAGGAGATTTTACCAA+AGG | + | chr7.1:1656500-1656519 | MS.gene025980:CDS | 40.0% |
! | GAGAAGGTTGGTTCACAAAA+TGG | + | chr7.1:1656740-1656759 | MS.gene025980:CDS | 40.0% |
! | GGAGATTTTACCAAAGGGAA+TGG | + | chr7.1:1656506-1656525 | MS.gene025980:CDS | 40.0% |
ATACGATGTAGTTCAGGCCA+TGG | + | chr7.1:1656718-1656737 | MS.gene025980:CDS | 45.0% | |
ATTGGGTCCAGAATTTGCCA+TGG | - | chr7.1:1656612-1656631 | None:intergenic | 45.0% | |
CAGGTTGTCATCGAAGATTG+TGG | + | chr7.1:1656776-1656795 | MS.gene025980:CDS | 45.0% | |
CCAGAGTTTATGTGTCAAGG+AGG | + | chr7.1:1656485-1656504 | MS.gene025980:CDS | 45.0% | |
CCTCCTTGACACATAAACTC+TGG | - | chr7.1:1656488-1656507 | None:intergenic | 45.0% | |
CGAAGGATACGATGTAGTTC+AGG | + | chr7.1:1656712-1656731 | MS.gene025980:CDS | 45.0% | |
TGGACCTGGTATTCTTTCCA+TGG | + | chr7.1:1656592-1656611 | MS.gene025980:CDS | 45.0% | |
TTGTGAACCAACCTTCTCCA+TGG | - | chr7.1:1656738-1656757 | None:intergenic | 45.0% | |
!!! | AATTTTAGGGCACTCTGCAC+AGG | + | chr7.1:1656395-1656414 | MS.gene025980:CDS | 45.0% |
AAGCTGAAGCATACTGGACC+TGG | + | chr7.1:1656578-1656597 | MS.gene025980:CDS | 50.0% | |
TCCTCCAGTACCATTCCCTT+TGG | - | chr7.1:1656519-1656538 | None:intergenic | 50.0% | |
TGTAGTTCAGGCCATGGAGA+AGG | + | chr7.1:1656724-1656743 | MS.gene025980:CDS | 50.0% | |
! | ACCAAAGGGAATGGTACTGG+AGG | + | chr7.1:1656515-1656534 | MS.gene025980:CDS | 50.0% |
! | TGCACAGGAGAAAGGGGTAT+TGG | + | chr7.1:1656410-1656429 | MS.gene025980:CDS | 50.0% |
!! | GAAAGGGGTATTGGGCAATG+CGG | + | chr7.1:1656419-1656438 | MS.gene025980:CDS | 50.0% |
!! | GCACAGGAGAAAGGGGTATT+GGG | + | chr7.1:1656411-1656430 | MS.gene025980:CDS | 50.0% |
GCACTCTGCACAGGAGAAAG+GGG | + | chr7.1:1656404-1656423 | MS.gene025980:CDS | 55.0% | |
GGCACTCTGCACAGGAGAAA+GGG | + | chr7.1:1656403-1656422 | MS.gene025980:CDS | 55.0% | |
GTTCAGGCCATGGAGAAGGT+TGG | + | chr7.1:1656728-1656747 | MS.gene025980:CDS | 55.0% | |
GGGCACTCTGCACAGGAGAA+AGG | + | chr7.1:1656402-1656421 | MS.gene025980:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 1656293 | 1656811 | 1656293 | ID=MS.gene025980 |
chr7.1 | mRNA | 1656293 | 1656811 | 1656293 | ID=MS.gene025980.t1;Parent=MS.gene025980 |
chr7.1 | exon | 1656293 | 1656811 | 1656293 | ID=MS.gene025980.t1.exon1;Parent=MS.gene025980.t1 |
chr7.1 | CDS | 1656293 | 1656811 | 1656293 | ID=cds.MS.gene025980.t1;Parent=MS.gene025980.t1 |
Gene Sequence |
Protein sequence |