AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007179

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007179.t1 MTR_7g105220 98.780 164 2 0 1 164 1 164 1.96e-121 339
MS.gene007179.t1 MTR_8g036015 50.331 151 75 0 12 162 3 153 2.87e-53 166
MS.gene007179.t1 MTR_2g085075 52.597 154 72 1 10 162 461 614 2.22e-52 176
MS.gene007179.t1 MTR_5g015500 52.055 146 70 0 12 157 307 452 9.35e-50 167
MS.gene007179.t1 MTR_5g015500 52.055 146 70 0 12 157 347 492 1.86e-49 167
MS.gene007179.t1 MTR_2g023120 53.247 154 70 2 11 162 14 167 6.88e-43 149
MS.gene007179.t1 MTR_1g085560 50.336 149 68 5 17 160 97 244 5.67e-40 135
MS.gene007179.t1 MTR_1g117010 49.306 144 68 4 18 157 93 235 1.29e-39 134
MS.gene007179.t1 MTR_1g117010 49.306 144 68 4 18 157 93 235 1.29e-39 134
MS.gene007179.t1 MTR_7g110980 50.000 146 68 4 17 158 108 252 2.78e-39 134
MS.gene007179.t1 MTR_4g086760 48.684 152 65 4 19 158 18 168 3.28e-38 132
MS.gene007179.t1 MTR_4g086760 48.684 152 65 4 19 158 18 168 4.14e-38 132
MS.gene007179.t1 MTR_4g086760 48.684 152 65 4 19 158 18 168 5.25e-38 133
MS.gene007179.t1 MTR_6g084140 42.138 159 84 2 12 162 3 161 6.46e-37 134
MS.gene007179.t1 MTR_8g040180 47.552 143 64 4 19 151 32 173 7.19e-37 125
MS.gene007179.t1 MTR_6g084140 42.138 159 84 2 12 162 20 178 7.58e-37 134
MS.gene007179.t1 MTR_7g116340 47.973 148 65 4 19 155 18 164 9.99e-37 125
MS.gene007179.t1 MTR_8g079690 44.242 165 74 5 10 157 4 167 1.68e-36 129
MS.gene007179.t1 MTR_8g442420 41.509 159 85 2 12 162 3 161 1.65e-35 130
MS.gene007179.t1 MTR_3g117750 51.079 139 52 5 18 143 25 160 5.99e-35 120
MS.gene007179.t1 MTR_4g075290 48.684 152 57 6 10 143 4 152 1.16e-34 119
MS.gene007179.t1 MTR_3g463900 49.624 133 55 4 19 140 48 179 1.36e-34 120
MS.gene007179.t1 MTR_7g095750 47.297 148 64 5 23 158 25 170 6.95e-34 125
MS.gene007179.t1 MTR_3g070500 48.889 135 57 4 17 140 76 209 5.01e-33 117
MS.gene007179.t1 MTR_4g073650 40.458 131 66 3 18 137 59 188 3.24e-27 102
MS.gene007179.t1 MTR_3g070500 52.778 108 39 4 17 113 76 182 3.38e-24 93.2
MS.gene007179.t1 MTR_1g094065 33.113 151 95 2 13 163 83 227 3.04e-23 92.0
MS.gene007179.t1 MTR_3g107660 38.286 175 89 6 1 158 1 173 6.55e-21 89.0
MS.gene007179.t1 MTR_1g035360 30.263 152 99 3 13 163 82 227 1.39e-19 82.4
MS.gene007179.t1 MTR_1g011980 42.424 132 62 4 24 143 26 155 5.81e-19 83.2
MS.gene007179.t1 MTR_3g085705 43.878 98 51 2 54 151 32 125 7.53e-18 75.1
MS.gene007179.t1 MTR_5g039210 31.544 149 84 5 8 145 24 165 5.89e-13 63.9
MS.gene007179.t1 MTR_5g039210 31.544 149 84 5 8 145 24 165 9.67e-13 63.9
MS.gene007179.t1 MTR_3g070500 47.126 87 34 4 17 92 76 161 2.13e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007179.t1 AT2G36130 86.585 164 22 0 1 164 1 164 2.93e-106 301
MS.gene007179.t1 AT1G01940 50.331 151 75 0 12 162 3 153 3.66e-53 166
MS.gene007179.t1 AT3G44600 52.500 160 75 1 4 162 469 628 7.54e-53 177
MS.gene007179.t1 AT5G67530 49.669 151 76 0 12 162 346 496 1.92e-49 167
MS.gene007179.t1 AT4G33060 50.968 155 73 3 11 162 14 168 4.33e-44 152
MS.gene007179.t1 AT3G62030 51.748 143 64 3 19 157 108 249 1.90e-38 132
MS.gene007179.t1 AT3G62030 51.748 143 64 3 19 157 109 250 1.99e-38 132
MS.gene007179.t1 AT1G53720 40.994 161 87 3 12 164 3 163 6.27e-38 133
MS.gene007179.t1 AT3G62030 51.748 143 64 3 19 157 162 303 7.74e-38 132
MS.gene007179.t1 AT5G13120 48.252 143 69 4 19 157 103 244 1.27e-37 129
MS.gene007179.t1 AT5G13120 48.252 143 69 4 19 157 107 248 1.55e-37 129
MS.gene007179.t1 AT2G21130 46.914 162 66 6 7 157 14 166 8.44e-37 125
MS.gene007179.t1 AT4G38740 48.000 150 65 5 19 157 18 165 1.76e-36 124
MS.gene007179.t1 AT3G56070 50.360 139 57 3 19 146 18 155 2.59e-36 124
MS.gene007179.t1 AT3G56070 50.360 139 57 3 19 146 18 155 2.59e-36 124
MS.gene007179.t1 AT1G53720 40.994 161 87 3 12 164 3 163 2.70e-36 131
MS.gene007179.t1 AT2G15790 47.020 151 67 4 19 157 18 167 4.48e-36 128
MS.gene007179.t1 AT3G63400 45.181 166 72 5 10 158 7 170 1.49e-35 127
MS.gene007179.t1 AT2G29960 48.889 135 57 4 17 140 44 177 3.73e-35 122
MS.gene007179.t1 AT2G29960 48.889 135 57 4 17 140 44 177 3.73e-35 122
MS.gene007179.t1 AT4G34870 47.586 145 60 4 16 147 15 156 4.67e-35 120
MS.gene007179.t1 AT2G38730 46.012 163 72 6 10 157 32 193 5.81e-35 121
MS.gene007179.t1 AT2G16600 48.344 151 60 6 17 152 17 164 7.40e-35 120
MS.gene007179.t1 AT3G55920 44.444 153 72 4 19 160 73 223 2.28e-34 120
MS.gene007179.t1 AT3G63400 45.181 166 72 5 10 158 7 170 3.02e-34 126
MS.gene007179.t1 AT3G63400 45.181 166 72 5 10 158 7 170 3.02e-34 126
MS.gene007179.t1 AT3G63400 45.181 166 72 5 10 158 7 170 3.02e-34 126
MS.gene007179.t1 AT5G58710 47.407 135 59 3 17 140 47 180 4.68e-33 116
MS.gene007179.t1 AT2G29960 44.444 135 53 5 17 140 44 167 1.19e-27 102
MS.gene007179.t1 AT2G16600 45.070 142 56 5 17 152 17 142 4.95e-27 99.8
MS.gene007179.t1 AT4G34960 40.310 129 65 4 18 135 60 187 3.72e-25 96.7
MS.gene007179.t1 AT2G47320 30.000 150 101 2 13 162 81 226 3.04e-19 81.3
MS.gene007179.t1 AT4G34960 41.121 107 51 3 18 113 60 165 3.91e-19 79.7
MS.gene007179.t1 AT4G32420 35.465 172 92 6 5 159 2 171 2.64e-18 81.3
MS.gene007179.t1 AT4G32420 35.465 172 92 6 5 159 2 171 2.64e-18 81.3
MS.gene007179.t1 AT4G32420 35.465 172 92 6 5 159 2 171 2.64e-18 81.3
MS.gene007179.t1 AT4G32420 35.465 172 92 6 5 159 2 171 2.64e-18 81.3
MS.gene007179.t1 AT4G32420 34.911 169 91 6 5 156 2 168 1.90e-16 76.3
MS.gene007179.t1 AT3G66654 28.261 138 98 1 14 151 85 221 5.09e-16 73.2
MS.gene007179.t1 AT3G66654 28.261 138 98 1 14 151 85 221 5.09e-16 73.2
MS.gene007179.t1 AT3G66654 28.261 138 98 1 14 151 85 221 5.09e-16 73.2
MS.gene007179.t1 AT3G66654 28.261 138 98 1 14 151 85 221 5.09e-16 73.2
MS.gene007179.t1 AT3G66654 28.261 138 98 1 14 151 85 221 5.09e-16 73.2
MS.gene007179.t1 AT1G53780 41.667 84 48 1 80 162 4 87 1.03e-15 73.9
MS.gene007179.t1 AT1G26940 30.952 168 105 5 6 164 28 193 4.63e-13 64.7
MS.gene007179.t1 AT1G26940 30.247 162 102 5 12 164 3 162 9.08e-12 60.8

Find 53 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGACTTCCGTTAGTATT+AGG 0.209355 7.3:-9386438 None:intergenic
TCTCGCACCGTGCCCCTCTT+TGG 0.259093 7.3:+9386470 MS.gene007179:CDS
ATGAAGTTCCTACAAGTTCT+AGG 0.269440 7.3:-9385771 None:intergenic
ACTGACTTCCGTTAGTATTA+GGG 0.308819 7.3:-9386437 None:intergenic
ACCTGTCATTGTTATCTGTT+TGG 0.338632 7.3:-9387352 None:intergenic
AGAGGAGGAGAATCCATCTA+TGG 0.352009 7.3:+9385979 MS.gene007179:CDS
CCAGGAAAACACACAATATT+CGG 0.372270 7.3:+9387284 MS.gene007179:intron
AGTTAAAGCATACCCATAGA+TGG 0.430770 7.3:-9385992 None:intergenic
AATATTCGGAAGAGTAAGTC+GGG 0.456454 7.3:+9387298 MS.gene007179:CDS
GGTGGGGATCCCACTGGGAC+AGG 0.457978 7.3:+9385955 MS.gene007179:CDS
GATCCCACTGGGACAGGAAG+AGG 0.463282 7.3:+9385961 MS.gene007179:CDS
AAGCGCAGAAGGTGGTGCTC+CGG 0.493778 7.3:+9385599 MS.gene007179:CDS
GAGCTGAAGCACACTGGAGC+TGG 0.513405 7.3:+9386390 MS.gene007179:CDS
CCTCCTCTTCCTGTCCCAGT+GGG 0.517919 7.3:-9385964 None:intergenic
GATAAATTACCATCCAAAGA+GGG 0.534312 7.3:-9386483 None:intergenic
GCACCGTGCCCCTCTTTGGA+TGG 0.536332 7.3:+9386474 MS.gene007179:CDS
CGCAGAAGGTGGTGCTCCGG+AGG 0.537673 7.3:+9385602 MS.gene007179:CDS
CGGAAGAGTAAGTCGGGGAA+TGG 0.538120 7.3:+9387304 MS.gene007179:CDS
AAAATGTGGGCAAGCGCAGA+AGG 0.539071 7.3:+9385588 None:intergenic
GAGTAGGATTTCATAGTACA+AGG 0.541774 7.3:+9385934 MS.gene007179:intron
AGGATTTCATAGTACAAGGT+GGG 0.556519 7.3:+9385938 MS.gene007179:intron
TCCGTAGTATCTTCACATCA+TGG 0.557400 7.3:-9388204 None:intergenic
TCCAAACAGATAACAATGAC+AGG 0.562883 7.3:+9387351 MS.gene007179:CDS
TCCTCCTCTTCCTGTCCCAG+TGG 0.564512 7.3:-9385965 None:intergenic
AATAATAATAATTACCTCGA+CGG 0.570411 7.3:-9385655 None:intergenic
TACAAGGTGGGGATCCCACT+GGG 0.581439 7.3:+9385950 MS.gene007179:CDS
GGTTACTCTAGAAACTTCCA+TGG 0.582783 7.3:+9385623 MS.gene007179:CDS
TAGTATCTTCACATCATGGA+CGG 0.585917 7.3:-9388200 None:intergenic
GTACAAGGTGGGGATCCCAC+TGG 0.586480 7.3:+9385949 MS.gene007179:CDS
AGTATCTTCACATCATGGAC+GGG 0.587817 7.3:-9388199 None:intergenic
AGCATGCACCTAGAACTTGT+AGG 0.588442 7.3:+9385763 MS.gene007179:CDS
AAACAAGAGCTGAAGCACAC+TGG 0.591406 7.3:+9386384 MS.gene007179:CDS
TCCATGATGTGAAGATACTA+CGG 0.592850 7.3:+9388203 MS.gene007179:CDS
GAGGAGGAGAATCCATCTAT+GGG 0.597355 7.3:+9385980 MS.gene007179:CDS
CAATATTCGGAAGAGTAAGT+CGG 0.597820 7.3:+9387297 MS.gene007179:CDS
TAAGTTCCACAGAATCATCA+AGG 0.601613 7.3:+9385827 MS.gene007179:CDS
AGATAAATTACCATCCAAAG+AGG 0.606617 7.3:-9386484 None:intergenic
ATGGAAATCATCAAAAGACT+TGG 0.607942 7.3:+9387323 MS.gene007179:CDS
GAAGTTTCTAGAGTAACCTC+CGG 0.610654 7.3:-9385618 None:intergenic
CCCACTGGGACAGGAAGAGG+AGG 0.622286 7.3:+9385964 MS.gene007179:CDS
CTCGACGGTGAATGAACCCA+TGG 0.626061 7.3:-9385640 None:intergenic
GGATTTCATAGTACAAGGTG+GGG 0.626995 7.3:+9385939 MS.gene007179:intron
TTCATTGAACTATCTCGTAG+AGG 0.631851 7.3:+9385789 MS.gene007179:CDS
TGAATACCTTGATGATTCTG+TGG 0.644502 7.3:-9385833 None:intergenic
AATGCTGGCCCTAATACTAA+CGG 0.646655 7.3:+9386429 MS.gene007179:CDS
TAGGATTTCATAGTACAAGG+TGG 0.656984 7.3:+9385937 MS.gene007179:intron
GATACTACGGACATCAGTCA+AGG 0.657156 7.3:+9388216 MS.gene007179:CDS
ATGTGGGCAAGCGCAGAAGG+TGG 0.657684 7.3:+9385591 MS.gene007179:CDS
CATGGGTTCATTCACCGTCG+AGG 0.657749 7.3:+9385641 MS.gene007179:CDS
GTTACTCTAGAAACTTCCAT+GGG 0.658204 7.3:+9385624 MS.gene007179:CDS
TTACCATCCAAAGAGGGGCA+CGG 0.666255 7.3:-9386477 None:intergenic
ATAAATTACCATCCAAAGAG+GGG 0.671498 7.3:-9386482 None:intergenic
ATATTCGGAAGAGTAAGTCG+GGG 0.743686 7.3:+9387299 MS.gene007179:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTAACATTTTTTTTTTT+TGG + chr7.3:9385722-9385741 MS.gene007179:intron 10.0%
!! TTATATATAGTATCTGTAAA+TGG - chr7.3:9387400-9387419 None:intergenic 15.0%
!!! ATTTTGTCTTAAAATTTAGA+TGG + chr7.3:9385880-9385899 MS.gene007179:intron 15.0%
!!! GGTCTAAAATTTAAAAATAT+AGG + chr7.3:9387623-9387642 MS.gene007179:intron 15.0%
!!! TTTTAACTATCATGTTATAA+GGG + chr7.3:9388014-9388033 MS.gene007179:intron 15.0%
!! AAAAATGTAAAGATAAAACG+AGG - chr7.3:9386765-9386784 None:intergenic 20.0%
!! AAATGAAGTTGTTTATTCAA+AGG + chr7.3:9386271-9386290 MS.gene007179:intron 20.0%
!! AATAAACATATATGCCAAAA+CGG + chr7.3:9387014-9387033 MS.gene007179:intron 20.0%
!! AATAATAATAATTACCTCGA+CGG - chr7.3:9385658-9385677 None:intergenic 20.0%
!! AATGAAGTTGTTTATTCAAA+GGG + chr7.3:9386272-9386291 MS.gene007179:intron 20.0%
!! AATTTCCAAAGTAAAATAGA+AGG - chr7.3:9386517-9386536 None:intergenic 20.0%
!! ATCATAAAATTGCTAGTATT+GGG + chr7.3:9387469-9387488 MS.gene007179:intron 20.0%
!! ATGATTAAATAGCAATATAG+AGG - chr7.3:9386851-9386870 None:intergenic 20.0%
!! TAATCGTGTTATCATAATAT+GGG + chr7.3:9386041-9386060 MS.gene007179:intron 20.0%
!! TACATTTAAATAAAACACGT+TGG + chr7.3:9387682-9387701 MS.gene007179:intron 20.0%
!! TGGAAATTATTAATACATGT+TGG + chr7.3:9386529-9386548 MS.gene007179:intron 20.0%
!! TTAAAACTAGCGTATAATAA+GGG - chr7.3:9388000-9388019 None:intergenic 20.0%
!! TTAAATAAGCTCTACTTATA+TGG - chr7.3:9386624-9386643 None:intergenic 20.0%
!! TTTAAAAATATAGGATCAGA+AGG + chr7.3:9387632-9387651 MS.gene007179:intron 20.0%
!!! AATTCATATAGTGAAACTTT+TGG + chr7.3:9387230-9387249 MS.gene007179:intron 20.0%
!!! CAAATATGTCAATTTTTTCA+AGG - chr7.3:9388158-9388177 None:intergenic 20.0%
!!! GTGTTGTTTTTTAATTACAT+TGG + chr7.3:9385902-9385921 MS.gene007179:intron 20.0%
!!! GTTTTAACTATCATGTTATA+AGG + chr7.3:9388013-9388032 MS.gene007179:intron 20.0%
!!! TATATGATACTGATAATGTT+GGG + chr7.3:9387492-9387511 MS.gene007179:intron 20.0%
! AATAACGAACAATGAAAATG+TGG - chr7.3:9385863-9385882 None:intergenic 25.0%
! AATGGAACAAAAAGTAGTTA+TGG + chr7.3:9387877-9387896 MS.gene007179:intron 25.0%
! ATGAAGTTGTTTATTCAAAG+GGG + chr7.3:9386273-9386292 MS.gene007179:intron 25.0%
! ATGGAACAAAAAGTAGTTAT+GGG + chr7.3:9387878-9387897 MS.gene007179:intron 25.0%
! CCAAGAAAAAAAGTTCATAA+AGG - chr7.3:9388116-9388135 None:intergenic 25.0%
! GATCATAAAATTGCTAGTAT+TGG + chr7.3:9387468-9387487 MS.gene007179:intron 25.0%
! GTAATCGTGTTATCATAATA+TGG + chr7.3:9386040-9386059 MS.gene007179:intron 25.0%
! GTTAAAACTAGCGTATAATA+AGG - chr7.3:9388001-9388020 None:intergenic 25.0%
! TAATGACACTTTGTGATATT+GGG + chr7.3:9387445-9387464 MS.gene007179:intron 25.0%
! TCATTATGTAATGTAATCTG+AGG + chr7.3:9386867-9386886 MS.gene007179:intron 25.0%
! TGCTTATAGTAATATGAATG+TGG + chr7.3:9386921-9386940 MS.gene007179:intron 25.0%
! TTAATGACACTTTGTGATAT+TGG + chr7.3:9387444-9387463 MS.gene007179:intron 25.0%
! TTTCATAAAATTCCATTTCC+TGG - chr7.3:9388046-9388065 None:intergenic 25.0%
!! ACATGTTCATAAACTGTTTT+CGG + chr7.3:9386125-9386144 MS.gene007179:intron 25.0%
!! CAATTACAAGCAAAGTTTTT+GGG + chr7.3:9387579-9387598 MS.gene007179:intron 25.0%
!! GTATATGATACTGATAATGT+TGG + chr7.3:9387491-9387510 MS.gene007179:intron 25.0%
!! TATCATAATATGGGTTTGTT+TGG + chr7.3:9386050-9386069 MS.gene007179:intron 25.0%
!! TCAATTACAAGCAAAGTTTT+TGG + chr7.3:9387578-9387597 MS.gene007179:intron 25.0%
!! TTCTTCCTTCTATTTTACTT+TGG + chr7.3:9386509-9386528 MS.gene007179:intron 25.0%
!!! AACTACTTTTTGTTCCATTT+TGG - chr7.3:9387876-9387895 None:intergenic 25.0%
!!! AAGTGTCATTAAACTGTTTT+AGG - chr7.3:9387436-9387455 None:intergenic 25.0%
!!! CCTTTATGAACTTTTTTTCT+TGG + chr7.3:9388113-9388132 MS.gene007179:intron 25.0%
!!! GAGGATTTTTTTAGATGATT+TGG - chr7.3:9386832-9386851 None:intergenic 25.0%
!!! TAGATGATTTGGTGATTATA+TGG - chr7.3:9386821-9386840 None:intergenic 25.0%
!!! TGTTCTATTTCTACTTATTC+AGG + chr7.3:9388176-9388195 MS.gene007179:intron 25.0%
AAAACCCTAATTCTGTATCA+GGG - chr7.3:9385707-9385726 None:intergenic 30.0%
AAAGGACCAAATGTATGATT+TGG + chr7.3:9387927-9387946 MS.gene007179:intron 30.0%
AAATAAAACACGTTGGATCT+AGG + chr7.3:9387689-9387708 MS.gene007179:intron 30.0%
AAATTTGAACCCAATAAGCA+TGG - chr7.3:9386690-9386709 None:intergenic 30.0%
AAGGACCAAATGTATGATTT+GGG + chr7.3:9387928-9387947 MS.gene007179:intron 30.0%
AATGACACTTTGTGATATTG+GGG + chr7.3:9387446-9387465 MS.gene007179:intron 30.0%
AGATAAATTACCATCCAAAG+AGG - chr7.3:9386487-9386506 None:intergenic 30.0%
ATAAATTACCATCCAAAGAG+GGG - chr7.3:9386485-9386504 None:intergenic 30.0%
ATCAACTGACATAAACTGTT+TGG + chr7.3:9386091-9386110 MS.gene007179:intron 30.0%
ATCATCTGATGCTAATGTTA+TGG - chr7.3:9387200-9387219 None:intergenic 30.0%
ATCTAGGTTTGGATATATAG+TGG + chr7.3:9387705-9387724 MS.gene007179:intron 30.0%
ATGGAAATCATCAAAAGACT+TGG + chr7.3:9387323-9387342 MS.gene007179:CDS 30.0%
ATGTAAATTGAATACGCACA+AGG - chr7.3:9387667-9387686 None:intergenic 30.0%
CCAAAAACAAACCAATAGTT+GGG - chr7.3:9386659-9386678 None:intergenic 30.0%
CCAAACAAAAATCATCAACA+AGG - chr7.3:9386556-9386575 None:intergenic 30.0%
GATAAATTACCATCCAAAGA+GGG - chr7.3:9386486-9386505 None:intergenic 30.0%
GATGCCACAAAATAAGTTAA+AGG + chr7.3:9387909-9387928 MS.gene007179:intron 30.0%
TAAAACCCTAATTCTGTATC+AGG - chr7.3:9385708-9385727 None:intergenic 30.0%
TAAACCCTGATACAGAATTA+GGG + chr7.3:9385700-9385719 MS.gene007179:intron 30.0%
TCAACTGACATAAACTGTTT+GGG + chr7.3:9386092-9386111 MS.gene007179:intron 30.0%
TCCAAAAACAAACCAATAGT+TGG - chr7.3:9386660-9386679 None:intergenic 30.0%
TCGTAGTAAGTAACAATTGT+AGG - chr7.3:9387146-9387165 None:intergenic 30.0%
TGAAGTTGTTTATTCAAAGG+GGG + chr7.3:9386274-9386293 MS.gene007179:intron 30.0%
TGGATATATAGTGGCTAATT+GGG + chr7.3:9387714-9387733 MS.gene007179:intron 30.0%
TGTAGGAATGCAAAAAACAA+GGG + chr7.3:9387082-9387101 MS.gene007179:intron 30.0%
TTAAACCCTGATACAGAATT+AGG + chr7.3:9385699-9385718 MS.gene007179:intron 30.0%
TTGGATATATAGTGGCTAAT+TGG + chr7.3:9387713-9387732 MS.gene007179:intron 30.0%
! AAAACCGAGATTTTGTGTAA+AGG + chr7.3:9387797-9387816 MS.gene007179:intron 30.0%
! ATTTTATCAATGGCTAATGC+TGG + chr7.3:9386414-9386433 MS.gene007179:CDS 30.0%
! CATTTTTGTATAAGCTGTCT+TGG - chr7.3:9386169-9386188 None:intergenic 30.0%
! GTTTCATTGACTAAATCTGT+AGG + chr7.3:9387065-9387084 MS.gene007179:intron 30.0%
! TAATATGGGTTTGTTTGGAT+CGG + chr7.3:9386055-9386074 MS.gene007179:intron 30.0%
!! TTTAGCCACTTTGTTGTTTA+TGG + chr7.3:9386336-9386355 MS.gene007179:intron 30.0%
!!! ACATTGGTTTTTTGTTGAGT+AGG + chr7.3:9385918-9385937 MS.gene007179:intron 30.0%
!!! CCTTGTTGATGATTTTTGTT+TGG + chr7.3:9386553-9386572 MS.gene007179:intron 30.0%
!!! TGGTCCTTTAACTTATTTTG+TGG - chr7.3:9387916-9387935 None:intergenic 30.0%
AAACTAGCGTATAATAAGGG+TGG - chr7.3:9387997-9388016 None:intergenic 35.0%
AACTGACATAAACTGTTTGG+GGG + chr7.3:9386094-9386113 MS.gene007179:intron 35.0%
AATATTCGGAAGAGTAAGTC+GGG + chr7.3:9387298-9387317 MS.gene007179:CDS 35.0%
ACCTGTCATTGTTATCTGTT+TGG - chr7.3:9387355-9387374 None:intergenic 35.0%
ACTCAATTTCTGTTTCAACC+AGG + chr7.3:9387266-9387285 MS.gene007179:intron 35.0%
AGGATTTCATAGTACAAGGT+GGG + chr7.3:9385938-9385957 MS.gene007179:intron 35.0%
AGTTAAAGCATACCCATAGA+TGG - chr7.3:9385995-9386014 None:intergenic 35.0%
ATGAAGTTCCTACAAGTTCT+AGG - chr7.3:9385774-9385793 None:intergenic 35.0%
CAAAGCCCAAATCATACATT+TGG - chr7.3:9387936-9387955 None:intergenic 35.0%
CAACTGACATAAACTGTTTG+GGG + chr7.3:9386093-9386112 MS.gene007179:intron 35.0%
CAATATTCGGAAGAGTAAGT+CGG + chr7.3:9387297-9387316 MS.gene007179:CDS 35.0%
CCAGGAAAACACACAATATT+CGG + chr7.3:9387284-9387303 MS.gene007179:intron 35.0%
CTGTAGGAATGCAAAAAACA+AGG + chr7.3:9387081-9387100 MS.gene007179:intron 35.0%
GAATATTGTAACAGTGCATG+AGG - chr7.3:9387560-9387579 None:intergenic 35.0%
GAATGTGGATGATTATCTCT+GGG + chr7.3:9386936-9386955 MS.gene007179:intron 35.0%
GAGTAGGATTTCATAGTACA+AGG + chr7.3:9385934-9385953 MS.gene007179:intron 35.0%
GGCAAACACAATAGATAATC+AGG + chr7.3:9386898-9386917 MS.gene007179:intron 35.0%
TAAGTCACCCAAAAAAACCT+AGG - chr7.3:9386300-9386319 None:intergenic 35.0%
TAAGTTCCACAGAATCATCA+AGG + chr7.3:9385827-9385846 MS.gene007179:CDS 35.0%
TAATAAGGGTGGTAAAGTGT+TGG - chr7.3:9387986-9388005 None:intergenic 35.0%
TAGGATTTCATAGTACAAGG+TGG + chr7.3:9385937-9385956 MS.gene007179:intron 35.0%
TAGTATCTTCACATCATGGA+CGG - chr7.3:9388203-9388222 None:intergenic 35.0%
TCCAAACAGATAACAATGAC+AGG + chr7.3:9387351-9387370 MS.gene007179:CDS 35.0%
TCCATGATGTGAAGATACTA+CGG + chr7.3:9388203-9388222 MS.gene007179:CDS 35.0%
TGAATGTGGATGATTATCTC+TGG + chr7.3:9386935-9386954 MS.gene007179:intron 35.0%
TTCATTGAACTATCTCGTAG+AGG + chr7.3:9385789-9385808 MS.gene007179:CDS 35.0%
! AACTGACTTCCGTTAGTATT+AGG - chr7.3:9386441-9386460 None:intergenic 35.0%
! AATAAGGGTGGTAAAGTGTT+GGG - chr7.3:9387985-9388004 None:intergenic 35.0%
! AATTTTAGACCTCGACAGAT+AGG - chr7.3:9387614-9387633 None:intergenic 35.0%
! ACTGACTTCCGTTAGTATTA+GGG - chr7.3:9386440-9386459 None:intergenic 35.0%
! GTTACTCTAGAAACTTCCAT+GGG + chr7.3:9385624-9385643 MS.gene007179:CDS 35.0%
! TGAATACCTTGATGATTCTG+TGG - chr7.3:9385836-9385855 None:intergenic 35.0%
! TGGAGCTGGTATTTTATCAA+TGG + chr7.3:9386404-9386423 MS.gene007179:CDS 35.0%
!! ACTGTTTTAGGCAAGATTGT+TGG - chr7.3:9387424-9387443 None:intergenic 35.0%
!! AGTAGTTGATTTGGGTTAGA+AGG + chr7.3:9387772-9387791 MS.gene007179:intron 35.0%
!! GTAGTTGATTTGGGTTAGAA+GGG + chr7.3:9387773-9387792 MS.gene007179:intron 35.0%
!! TAGTTGATTTGGGTTAGAAG+GGG + chr7.3:9387774-9387793 MS.gene007179:intron 35.0%
!! TGATAAGAGTACCCAACTAT+TGG + chr7.3:9386645-9386664 MS.gene007179:intron 35.0%
!!! CCCAACTATTGGTTTGTTTT+TGG + chr7.3:9386656-9386675 MS.gene007179:intron 35.0%
!!! CTTATTTTGTGGCATCACTT+TGG - chr7.3:9387905-9387924 None:intergenic 35.0%
AAACACGTTGGATCTAGGTT+TGG + chr7.3:9387694-9387713 MS.gene007179:intron 40.0%
AATGCTGGCCCTAATACTAA+CGG + chr7.3:9386429-9386448 MS.gene007179:CDS 40.0%
ACCAACAGAGGTAAAGTTAG+GGG + chr7.3:9387849-9387868 MS.gene007179:intron 40.0%
AGTATCTTCACATCATGGAC+GGG - chr7.3:9388202-9388221 None:intergenic 40.0%
ATATTCGGAAGAGTAAGTCG+GGG + chr7.3:9387299-9387318 MS.gene007179:CDS 40.0%
CACTGCCATAAACAACAAAG+TGG - chr7.3:9386344-9386363 None:intergenic 40.0%
GACAATGCACCATGCTTATT+GGG + chr7.3:9386678-9386697 MS.gene007179:intron 40.0%
GACCAACAGAGGTAAAGTTA+GGG + chr7.3:9387848-9387867 MS.gene007179:intron 40.0%
GGATTTCATAGTACAAGGTG+GGG + chr7.3:9385939-9385958 MS.gene007179:intron 40.0%
GTAAAGTTAGGGGACCAAAA+TGG + chr7.3:9387859-9387878 MS.gene007179:intron 40.0%
GTCGCCTTTACACAAAATCT+CGG - chr7.3:9387804-9387823 None:intergenic 40.0%
TCCGTAGTATCTTCACATCA+TGG - chr7.3:9388207-9388226 None:intergenic 40.0%
TCGAAAATGTTGGTCATCTG+AGG + chr7.3:9387520-9387539 MS.gene007179:intron 40.0%
TGACCAACAGAGGTAAAGTT+AGG + chr7.3:9387847-9387866 MS.gene007179:intron 40.0%
TTTGTGTAAAGGCGACAGAT+TGG + chr7.3:9387808-9387827 MS.gene007179:intron 40.0%
! ATGTAATCTGAGGTCACTGA+TGG + chr7.3:9386877-9386896 MS.gene007179:intron 40.0%
! CAGCTGTCTAATATCCGTTT+TGG - chr7.3:9387031-9387050 None:intergenic 40.0%
! CCGAATATTGTGTGTTTTCC+TGG - chr7.3:9387287-9387306 None:intergenic 40.0%
! GGTTACTCTAGAAACTTCCA+TGG + chr7.3:9385623-9385642 MS.gene007179:CDS 40.0%
! TCAGATGACCAACATTTTCG+AGG - chr7.3:9387521-9387540 None:intergenic 40.0%
!! ATGTTATAAGGGTGTCTTCC+AGG + chr7.3:9388025-9388044 MS.gene007179:intron 40.0%
!! GAAGTTTCTAGAGTAACCTC+CGG - chr7.3:9385621-9385640 None:intergenic 40.0%
AAACAAGAGCTGAAGCACAC+TGG + chr7.3:9386384-9386403 MS.gene007179:CDS 45.0%
AGAGGAGGAGAATCCATCTA+TGG + chr7.3:9385979-9385998 MS.gene007179:CDS 45.0%
AGCATGCACCTAGAACTTGT+AGG + chr7.3:9385763-9385782 MS.gene007179:CDS 45.0%
GAGGAGGAGAATCCATCTAT+GGG + chr7.3:9385980-9385999 MS.gene007179:CDS 45.0%
GATACTACGGACATCAGTCA+AGG + chr7.3:9388216-9388235 MS.gene007179:CDS 45.0%
GGACAATGCACCATGCTTAT+TGG + chr7.3:9386677-9386696 MS.gene007179:intron 45.0%
TCCACGCTGAGTAGTTGATT+TGG + chr7.3:9387763-9387782 MS.gene007179:intron 45.0%
TCCCCTAACTTTACCTCTGT+TGG - chr7.3:9387853-9387872 None:intergenic 45.0%
TGTAAAGGCGACAGATTGGA+CGG + chr7.3:9387812-9387831 MS.gene007179:intron 45.0%
TGTTACTCACTTGCATGGTG+AGG + chr7.3:9386581-9386600 MS.gene007179:intron 45.0%
TGTTTATTCAAAGGGGGCCT+AGG + chr7.3:9386280-9386299 MS.gene007179:intron 45.0%
TTGGGTGTCCTCGAAAATGT+TGG + chr7.3:9387510-9387529 MS.gene007179:intron 45.0%
! CACTGTGTTACTCACTTGCA+TGG + chr7.3:9386576-9386595 MS.gene007179:intron 45.0%
! CCACGCTGAGTAGTTGATTT+GGG + chr7.3:9387764-9387783 MS.gene007179:intron 45.0%
!! TAAGGGTGTCTTCCAGGAAA+TGG + chr7.3:9388031-9388050 MS.gene007179:intron 45.0%
!!! AAAGGGGGCCTAGGTTTTTT+TGG + chr7.3:9386289-9386308 MS.gene007179:intron 45.0%
!!! AAGGGGGCCTAGGTTTTTTT+GGG + chr7.3:9386290-9386309 MS.gene007179:intron 45.0%
!!! TTTTAACATTTTTTTTTTTT+GGG + chr7.3:9385723-9385742 MS.gene007179:intron 5.0%
AGGGCTAACTTGACCAACAG+AGG + chr7.3:9387837-9387856 MS.gene007179:intron 50.0%
CAACGAAAGCCTATCTGTCG+AGG + chr7.3:9387602-9387621 MS.gene007179:intron 50.0%
CCCAAATCAACTACTCAGCG+TGG - chr7.3:9387767-9387786 None:intergenic 50.0%
TTACCATCCAAAGAGGGGCA+CGG - chr7.3:9386480-9386499 None:intergenic 50.0%
AGGCGACAGATTGGACGGAA+AGG + chr7.3:9387817-9387836 MS.gene007179:intron 55.0%
CATGGGTTCATTCACCGTCG+AGG + chr7.3:9385641-9385660 MS.gene007179:CDS 55.0%
CGGAAGAGTAAGTCGGGGAA+TGG + chr7.3:9387304-9387323 MS.gene007179:CDS 55.0%
CTCGACGGTGAATGAACCCA+TGG - chr7.3:9385643-9385662 None:intergenic 55.0%
GGCGACAGATTGGACGGAAA+GGG + chr7.3:9387818-9387837 MS.gene007179:intron 55.0%
TACAAGGTGGGGATCCCACT+GGG + chr7.3:9385950-9385969 MS.gene007179:CDS 55.0%
AAGCGCAGAAGGTGGTGCTC+CGG + chr7.3:9385599-9385618 MS.gene007179:CDS 60.0%
ATGTGGGCAAGCGCAGAAGG+TGG + chr7.3:9385591-9385610 MS.gene007179:CDS 60.0%
CCTCCTCTTCCTGTCCCAGT+GGG - chr7.3:9385967-9385986 None:intergenic 60.0%
GAGCTGAAGCACACTGGAGC+TGG + chr7.3:9386390-9386409 MS.gene007179:CDS 60.0%
GATCCCACTGGGACAGGAAG+AGG + chr7.3:9385961-9385980 MS.gene007179:CDS 60.0%
GTACAAGGTGGGGATCCCAC+TGG + chr7.3:9385949-9385968 MS.gene007179:CDS 60.0%
TCCTCCTCTTCCTGTCCCAG+TGG - chr7.3:9385968-9385987 None:intergenic 60.0%
CCCACTGGGACAGGAAGAGG+AGG + chr7.3:9385964-9385983 MS.gene007179:CDS 65.0%
GCACCGTGCCCCTCTTTGGA+TGG + chr7.3:9386474-9386493 MS.gene007179:CDS 65.0%
TCTCGCACCGTGCCCCTCTT+TGG + chr7.3:9386470-9386489 MS.gene007179:CDS 65.0%
CGCAGAAGGTGGTGCTCCGG+AGG + chr7.3:9385602-9385621 MS.gene007179:CDS 70.0%
GGTGGGGATCCCACTGGGAC+AGG + chr7.3:9385955-9385974 MS.gene007179:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 9385591 9388243 9385591 ID=MS.gene007179
chr7.3 mRNA 9385591 9388243 9385591 ID=MS.gene007179.t1;Parent=MS.gene007179
chr7.3 exon 9385591 9385662 9385591 ID=MS.gene007179.t1.exon1;Parent=MS.gene007179.t1
chr7.3 CDS 9385591 9385662 9385591 ID=cds.MS.gene007179.t1;Parent=MS.gene007179.t1
chr7.3 exon 9385753 9385848 9385753 ID=MS.gene007179.t1.exon2;Parent=MS.gene007179.t1
chr7.3 CDS 9385753 9385848 9385753 ID=cds.MS.gene007179.t1;Parent=MS.gene007179.t1
chr7.3 exon 9385940 9386001 9385940 ID=MS.gene007179.t1.exon3;Parent=MS.gene007179.t1
chr7.3 CDS 9385940 9386001 9385940 ID=cds.MS.gene007179.t1;Parent=MS.gene007179.t1
chr7.3 exon 9386362 9386495 9386362 ID=MS.gene007179.t1.exon4;Parent=MS.gene007179.t1
chr7.3 CDS 9386362 9386495 9386362 ID=cds.MS.gene007179.t1;Parent=MS.gene007179.t1
chr7.3 exon 9387288 9387372 9387288 ID=MS.gene007179.t1.exon5;Parent=MS.gene007179.t1
chr7.3 CDS 9387288 9387372 9387288 ID=cds.MS.gene007179.t1;Parent=MS.gene007179.t1
chr7.3 exon 9388198 9388243 9388198 ID=MS.gene007179.t1.exon6;Parent=MS.gene007179.t1
chr7.3 CDS 9388198 9388243 9388198 ID=cds.MS.gene007179.t1;Parent=MS.gene007179.t1
Gene Sequence

>MS.gene007179

ATGTGGGCAAGCGCAGAAGGTGGTGCTCCGGAGGTTACTCTAGAAACTTCCATGGGTTCATTCACCGTCGAGGTAATTATTATTATTTTAATTTTTTTAATTCGTTCGTTAAACCCTGATACAGAATTAGGGTTTTAACATTTTTTTTTTTTGGGTTTTTAGTTGTACTACAAGCATGCACCTAGAACTTGTAGGAACTTCATTGAACTATCTCGTAGAGGTTATTACGACAACGTTAAGTTCCACAGAATCATCAAGGTATTCATCTTCCACATTTTCATTGTTCGTTATTTTGTCTTAAAATTTAGATGGTGTTGTTTTTTAATTACATTGGTTTTTTGTTGAGTAGGATTTCATAGTACAAGGTGGGGATCCCACTGGGACAGGAAGAGGAGGAGAATCCATCTATGGGTATGCTTTAACTCATCATCGTTATGTTAATTGTGTTTGTAATCGTGTTATCATAATATGGGTTTGTTTGGATCGGCTTATTTTCGCTTATCAACTGACATAAACTGTTTGGGGGAACTTATGACATGTTCATAAACTGTTTTCGGCTTATTTTCATAAGCTCTCCAAGACAGCTTATACAAAAATGATTTGACTTTATTTTATCTTTTGATATAGAAATAGCTTATATATAAGTGCTTATTTTGATAAGCGCTTATGCTATAAGCTGCAAATGAAGTTGTTTATTCAAAGGGGGCCTAGGTTTTTTTGGGTGACTTATGAGTTATCAATTCAATTTAGCCACTTTGTTGTTTATGGCAGTGCTAAATTTGAAGATGAGATTAAACAAGAGCTGAAGCACACTGGAGCTGGTATTTTATCAATGGCTAATGCTGGCCCTAATACTAACGGAAGTCAGTTCTTTATTACTCTCGCACCGTGCCCCTCTTTGGATGGTAATTTATCTGCTTCTTCCTTCTATTTTACTTTGGAAATTATTAATACATGTTGGTCCTTGTTGATGATTTTTGTTTGGCACTGTGTTACTCACTTGCATGGTGAGGACTTTGAGCTTCAAATGCCATATAAGTAGAGCTTATTTAAATGATAAGAGTACCCAACTATTGGTTTGTTTTTGGACAATGCACCATGCTTATTGGGTTCAAATTTTCTCATTGCAGAGTTGTGAAAAGTAAAATGTTTCGTATTTGTATCATGTTCACCTCGTTTTATCTTTACATTTTTTTTTAACTTTTGTCTGCAATATGATATGTTGATCCATATAATCACCAAATCATCTAAAAAAATCCTCTATATTGCTATTTAATCATTATGTAATGTAATCTGAGGTCACTGATGGCAAACACAATAGATAATCAGGTGCTTATAGTAATATGAATGTGGATGATTATCTCTGGGTTTGATTAGAATCTGTCTTGTTGTCTCTATTCTATTCATTTGTCAAAAGAACTATAATAAACATATATGCCAAAACGGATATTAGACAGCTGCACGCATTGCATTAGTTTCATTGACTAAATCTGTAGGAATGCAAAAAACAAGGGACTATTTTCTAAGTGCTGTTTGTGAGTTCTCTAATAAACCTACAATTGTTACTTACTACGAACTACTAGAGTAGAGTCAAGTATTTTTTTAGCCATAACATTAGCATCAGATGATTCATCATTCTAATTCATATAGTGAAACTTTTGGAATGCTTATTAGTACTCAATTTCTGTTTCAACCAGGAAAACACACAATATTCGGAAGAGTAAGTCGGGGAATGGAAATCATCAAAAGACTTGGCAGTGTCCAAACAGATAACAATGACAGGTATGTCGTATCATTCAAGATAAACCATTTACAGATACTATATATAAACCAACAATCTTGCCTAAAACAGTTTAATGACACTTTGTGATATTGGGGATCATAAAATTGCTAGTATTGGGTATATGATACTGATAATGTTGGGTGTCCTCGAAAATGTTGGTCATCTGAGGAATTGTTTTATGAGCCTCATGCACTGTTACAATATTCAATTACAAGCAAAGTTTTTGGGCAACGAAAGCCTATCTGTCGAGGTCTAAAATTTAAAAATATAGGATCAGAAGGAAGAATGTGCCTTGTGCGTATTCAATTTACATTTAAATAAAACACGTTGGATCTAGGTTTGGATATATAGTGGCTAATTGGGTGTGTAGACATCAAATAAATTGACTATCCACGCTGAGTAGTTGATTTGGGTTAGAAGGGGAAAACCGAGATTTTGTGTAAAGGCGACAGATTGGACGGAAAGGGCTAACTTGACCAACAGAGGTAAAGTTAGGGGACCAAAATGGAACAAAAAGTAGTTATGGGACCAAAGTGATGCCACAAAATAAGTTAAAGGACCAAATGTATGATTTGGGCTTTGTTTTTTAATGTGTATATCATCTTTAGCCCAACACTTTACCACCCTTATTATACGCTAGTTTTAACTATCATGTTATAAGGGTGTCTTCCAGGAAATGGAATTTTATGAAAACATTCTCTGATCATGCTAGACTAAATCAAGAACTTTCTTTGATCTTCCTTTATGAACTTTTTTTCTTGGTCGATCTTTGTGAACAACTCCTTGAAAAAATTGACATATTTGTTCTATTTCTACTTATTCAGGCCCGTCCATGATGTGAAGATACTACGGACATCAGTCAAGGATTGA
Protein sequence

>MS.gene007179.t1

MWASAEGGAPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKQELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVSRGMEIIKRLGSVQTDNNDRPVHDVKILRTSVKD