Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22872.t1 | ACJ86207.1 | 99.4 | 172 | 1 | 0 | 1 | 172 | 1 | 172 | 1.20E-95 | 359 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22872.t1 | Q38867 | 83.6 | 171 | 28 | 0 | 1 | 171 | 1 | 171 | 2.1e-83 | 309.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22872.t1 | B7FN74 | 99.4 | 172 | 1 | 0 | 1 | 172 | 1 | 172 | 8.9e-96 | 359.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050574 | MS.gene22872 | 0.996335 | 3.12E-226 | -1.69E-46 |
MS.gene050916 | MS.gene22872 | 0.820876 | 5.44E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene22872 | MS.gene04515 | PPI |
MS.gene052269 | MS.gene22872 | PPI |
MS.gene22872 | MS.gene04526 | PPI |
MS.gene063787 | MS.gene22872 | PPI |
MS.gene22872 | MS.gene019366 | PPI |
MS.gene22872 | MS.gene28703 | PPI |
MS.gene22872 | MS.gene28963 | PPI |
MS.gene22872 | MS.gene23663 | PPI |
MS.gene22872 | MS.gene23546 | PPI |
MS.gene22872 | MS.gene014216 | PPI |
MS.gene22872 | MS.gene063104 | PPI |
MS.gene22872 | MS.gene051153 | PPI |
MS.gene61767 | MS.gene22872 | PPI |
MS.gene68752 | MS.gene22872 | PPI |
MS.gene88451 | MS.gene22872 | PPI |
MS.gene22872 | MS.gene007179 | PPI |
MS.gene22872 | MS.gene052266 | PPI |
MS.gene39668 | MS.gene22872 | PPI |
MS.gene22872 | MS.gene003412 | PPI |
MS.gene68153 | MS.gene22872 | PPI |
MS.gene22872 | MS.gene048458 | PPI |
MS.gene22872 | MS.gene050281 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22872.t1 | MTR_7g116340 | 98.837 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 2.32e-126 | 352 |
MS.gene22872.t1 | MTR_4g075290 | 76.744 | 172 | 40 | 0 | 1 | 172 | 1 | 172 | 5.84e-100 | 285 |
MS.gene22872.t1 | MTR_3g117750 | 75.595 | 168 | 41 | 0 | 5 | 172 | 13 | 180 | 4.26e-95 | 274 |
MS.gene22872.t1 | MTR_3g463900 | 69.461 | 167 | 51 | 0 | 5 | 171 | 35 | 201 | 3.80e-84 | 246 |
MS.gene22872.t1 | MTR_3g070500 | 67.857 | 168 | 54 | 0 | 5 | 172 | 65 | 232 | 6.34e-82 | 242 |
MS.gene22872.t1 | MTR_7g095750 | 64.912 | 171 | 59 | 1 | 3 | 172 | 6 | 176 | 1.64e-76 | 240 |
MS.gene22872.t1 | MTR_8g079690 | 64.000 | 175 | 59 | 3 | 1 | 172 | 1 | 174 | 6.08e-72 | 221 |
MS.gene22872.t1 | MTR_1g085560 | 68.493 | 146 | 39 | 1 | 5 | 150 | 86 | 224 | 1.89e-69 | 211 |
MS.gene22872.t1 | MTR_1g117010 | 59.649 | 171 | 58 | 3 | 5 | 171 | 78 | 241 | 2.88e-67 | 205 |
MS.gene22872.t1 | MTR_1g117010 | 59.649 | 171 | 58 | 3 | 5 | 171 | 78 | 241 | 2.88e-67 | 205 |
MS.gene22872.t1 | MTR_8g040180 | 59.064 | 171 | 66 | 3 | 3 | 171 | 17 | 185 | 6.62e-66 | 199 |
MS.gene22872.t1 | MTR_7g110980 | 65.753 | 146 | 43 | 1 | 5 | 150 | 97 | 235 | 8.45e-66 | 202 |
MS.gene22872.t1 | MTR_4g086760 | 59.538 | 173 | 68 | 2 | 1 | 171 | 1 | 173 | 6.29e-65 | 201 |
MS.gene22872.t1 | MTR_4g086760 | 59.538 | 173 | 68 | 2 | 1 | 171 | 1 | 173 | 6.93e-65 | 202 |
MS.gene22872.t1 | MTR_4g086760 | 59.538 | 173 | 68 | 2 | 1 | 171 | 1 | 173 | 7.76e-65 | 202 |
MS.gene22872.t1 | MTR_3g070500 | 74.194 | 124 | 32 | 0 | 5 | 128 | 65 | 188 | 1.17e-64 | 196 |
MS.gene22872.t1 | MTR_4g073650 | 54.762 | 168 | 75 | 1 | 5 | 171 | 47 | 214 | 9.66e-63 | 193 |
MS.gene22872.t1 | MTR_3g107660 | 53.254 | 169 | 78 | 1 | 3 | 170 | 9 | 177 | 1.91e-51 | 176 |
MS.gene22872.t1 | MTR_3g070500 | 73.737 | 99 | 26 | 0 | 5 | 103 | 65 | 163 | 4.41e-49 | 156 |
MS.gene22872.t1 | MTR_3g070500 | 73.469 | 98 | 26 | 0 | 5 | 102 | 65 | 162 | 6.43e-49 | 156 |
MS.gene22872.t1 | MTR_1g011980 | 51.479 | 169 | 80 | 2 | 3 | 170 | 6 | 173 | 1.17e-47 | 165 |
MS.gene22872.t1 | MTR_2g085075 | 51.034 | 145 | 59 | 3 | 11 | 154 | 464 | 597 | 6.73e-37 | 134 |
MS.gene22872.t1 | MTR_7g105220 | 49.286 | 140 | 59 | 4 | 18 | 156 | 19 | 147 | 7.99e-37 | 125 |
MS.gene22872.t1 | MTR_8g036015 | 52.206 | 136 | 53 | 3 | 18 | 152 | 10 | 134 | 1.85e-36 | 124 |
MS.gene22872.t1 | MTR_5g015500 | 49.333 | 150 | 63 | 5 | 18 | 165 | 314 | 452 | 2.41e-32 | 121 |
MS.gene22872.t1 | MTR_5g015500 | 49.333 | 150 | 63 | 5 | 18 | 165 | 354 | 492 | 3.64e-32 | 120 |
MS.gene22872.t1 | MTR_3g085705 | 60.638 | 94 | 32 | 3 | 57 | 150 | 27 | 115 | 1.93e-31 | 110 |
MS.gene22872.t1 | MTR_2g023120 | 46.825 | 126 | 50 | 5 | 18 | 139 | 22 | 134 | 2.46e-21 | 90.1 |
MS.gene22872.t1 | MTR_6g084140 | 34.591 | 159 | 83 | 5 | 18 | 166 | 27 | 174 | 9.15e-21 | 88.6 |
MS.gene22872.t1 | MTR_6g084140 | 34.591 | 159 | 83 | 5 | 18 | 166 | 10 | 157 | 1.04e-20 | 88.6 |
MS.gene22872.t1 | MTR_8g442420 | 33.962 | 159 | 84 | 5 | 18 | 166 | 10 | 157 | 1.99e-19 | 84.7 |
MS.gene22872.t1 | MTR_4g111720 | 25.907 | 193 | 98 | 4 | 5 | 160 | 100 | 284 | 2.07e-12 | 64.3 |
MS.gene22872.t1 | MTR_1g035360 | 30.556 | 144 | 83 | 6 | 12 | 154 | 82 | 209 | 3.07e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22872.t1 | AT3G56070 | 83.626 | 171 | 28 | 0 | 1 | 171 | 1 | 171 | 1.46e-107 | 305 |
MS.gene22872.t1 | AT3G56070 | 83.626 | 171 | 28 | 0 | 1 | 171 | 1 | 171 | 1.46e-107 | 305 |
MS.gene22872.t1 | AT2G16600 | 78.947 | 171 | 36 | 0 | 2 | 172 | 3 | 173 | 1.96e-100 | 286 |
MS.gene22872.t1 | AT2G21130 | 77.193 | 171 | 39 | 0 | 2 | 172 | 3 | 173 | 5.94e-99 | 283 |
MS.gene22872.t1 | AT4G38740 | 74.419 | 172 | 44 | 0 | 1 | 172 | 1 | 172 | 9.18e-96 | 275 |
MS.gene22872.t1 | AT4G34870 | 75.000 | 172 | 43 | 0 | 1 | 172 | 1 | 172 | 8.59e-95 | 272 |
MS.gene22872.t1 | AT2G29960 | 70.060 | 167 | 50 | 0 | 5 | 171 | 33 | 199 | 1.01e-84 | 248 |
MS.gene22872.t1 | AT2G29960 | 70.060 | 167 | 50 | 0 | 5 | 171 | 33 | 199 | 1.01e-84 | 248 |
MS.gene22872.t1 | AT5G58710 | 69.461 | 167 | 51 | 0 | 5 | 171 | 36 | 202 | 1.87e-81 | 239 |
MS.gene22872.t1 | AT2G16600 | 67.836 | 171 | 33 | 1 | 2 | 172 | 3 | 151 | 3.69e-78 | 229 |
MS.gene22872.t1 | AT3G55920 | 64.881 | 168 | 59 | 0 | 5 | 172 | 60 | 227 | 8.99e-78 | 231 |
MS.gene22872.t1 | AT3G63400 | 65.497 | 171 | 58 | 1 | 3 | 172 | 6 | 176 | 7.27e-76 | 232 |
MS.gene22872.t1 | AT2G29960 | 65.269 | 167 | 48 | 1 | 5 | 171 | 33 | 189 | 2.97e-75 | 223 |
MS.gene22872.t1 | AT3G63400 | 65.497 | 171 | 58 | 1 | 3 | 172 | 6 | 176 | 4.57e-74 | 232 |
MS.gene22872.t1 | AT3G63400 | 65.497 | 171 | 58 | 1 | 3 | 172 | 6 | 176 | 4.57e-74 | 232 |
MS.gene22872.t1 | AT3G63400 | 65.497 | 171 | 58 | 1 | 3 | 172 | 6 | 176 | 4.57e-74 | 232 |
MS.gene22872.t1 | AT5G13120 | 61.988 | 171 | 54 | 3 | 5 | 171 | 87 | 250 | 6.13e-72 | 218 |
MS.gene22872.t1 | AT5G13120 | 61.988 | 171 | 54 | 3 | 5 | 171 | 91 | 254 | 6.43e-72 | 218 |
MS.gene22872.t1 | AT3G62030 | 69.863 | 146 | 37 | 1 | 5 | 150 | 95 | 233 | 8.71e-70 | 212 |
MS.gene22872.t1 | AT3G62030 | 69.863 | 146 | 37 | 1 | 5 | 150 | 96 | 234 | 9.08e-70 | 212 |
MS.gene22872.t1 | AT3G62030 | 69.863 | 146 | 37 | 1 | 5 | 150 | 149 | 287 | 4.99e-69 | 212 |
MS.gene22872.t1 | AT2G15790 | 61.272 | 173 | 65 | 2 | 1 | 171 | 1 | 173 | 1.85e-67 | 209 |
MS.gene22872.t1 | AT2G38730 | 59.649 | 171 | 65 | 3 | 3 | 171 | 31 | 199 | 2.66e-65 | 199 |
MS.gene22872.t1 | AT4G34960 | 53.571 | 168 | 77 | 1 | 5 | 171 | 48 | 215 | 1.58e-61 | 190 |
MS.gene22872.t1 | AT3G22920 | 55.114 | 176 | 67 | 6 | 1 | 172 | 1 | 168 | 3.91e-54 | 171 |
MS.gene22872.t1 | AT4G34960 | 55.645 | 124 | 55 | 0 | 5 | 128 | 48 | 171 | 4.81e-48 | 154 |
MS.gene22872.t1 | AT4G32420 | 49.704 | 169 | 84 | 1 | 3 | 170 | 6 | 174 | 5.75e-48 | 166 |
MS.gene22872.t1 | AT4G32420 | 49.704 | 169 | 84 | 1 | 3 | 170 | 6 | 174 | 5.75e-48 | 166 |
MS.gene22872.t1 | AT4G32420 | 49.704 | 169 | 84 | 1 | 3 | 170 | 6 | 174 | 5.75e-48 | 166 |
MS.gene22872.t1 | AT4G32420 | 49.704 | 169 | 84 | 1 | 3 | 170 | 6 | 174 | 5.75e-48 | 166 |
MS.gene22872.t1 | AT4G32420 | 50.318 | 157 | 77 | 1 | 3 | 158 | 6 | 162 | 9.87e-45 | 157 |
MS.gene22872.t1 | AT2G36130 | 50.000 | 140 | 58 | 4 | 18 | 156 | 19 | 147 | 1.12e-37 | 127 |
MS.gene22872.t1 | AT3G44600 | 49.045 | 157 | 67 | 4 | 11 | 165 | 478 | 623 | 2.37e-37 | 135 |
MS.gene22872.t1 | AT1G01940 | 52.206 | 136 | 53 | 3 | 18 | 152 | 10 | 134 | 3.60e-37 | 126 |
MS.gene22872.t1 | AT5G67530 | 48.667 | 150 | 64 | 5 | 18 | 165 | 353 | 491 | 3.17e-32 | 121 |
MS.gene22872.t1 | AT4G33060 | 47.200 | 125 | 53 | 4 | 18 | 140 | 22 | 135 | 1.48e-27 | 107 |
MS.gene22872.t1 | AT1G53720 | 39.130 | 138 | 64 | 5 | 18 | 146 | 10 | 136 | 1.66e-20 | 87.0 |
MS.gene22872.t1 | AT1G53720 | 39.130 | 138 | 64 | 5 | 18 | 146 | 10 | 136 | 2.30e-20 | 87.4 |
Find 46 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGGAAAGCATGTTGTATT+TGG | 0.221121 | 7.4:+1914754 | MS.gene22872:CDS |
ATTCTTTCCATGGCAAATTC+TGG | 0.225996 | 7.4:+1914676 | MS.gene22872:CDS |
ACTGGAGGAGAGTCTATATA+TGG | 0.292463 | 7.4:+1914604 | MS.gene22872:CDS |
GAGAAGGTTGGTTCACAAAA+TGG | 0.318577 | 7.4:+1914814 | MS.gene22872:CDS |
GGTAAACCTTTACACTATAA+AGG | 0.338627 | 7.4:+1914514 | MS.gene22872:CDS |
CCTTTACACTATAAAGGTTC+TGG | 0.340990 | 7.4:+1914520 | MS.gene22872:CDS |
AGAATATCAAAGAAAACCTT+TGG | 0.366302 | 7.4:-1914376 | None:intergenic |
TCAAAGACTCAATGGCTTGA+TGG | 0.389006 | 7.4:+1914736 | MS.gene22872:CDS |
ATCAAGCCATTGAGTCTTTG+AGG | 0.392504 | 7.4:-1914734 | None:intergenic |
TGCACAGGAGAAAGGGGTAT+TGG | 0.393886 | 7.4:+1914484 | MS.gene22872:CDS |
GCACAGGAGAAAGGGGTATT+GGG | 0.401126 | 7.4:+1914485 | MS.gene22872:CDS |
AACTGAGAACCATTAGTATT+GGG | 0.402674 | 7.4:-1914700 | None:intergenic |
AATTTCAAGCTGAAGCATAC+TGG | 0.411931 | 7.4:+1914646 | MS.gene22872:CDS |
CGAAGGATACGATGTAGTTC+AGG | 0.437134 | 7.4:+1914786 | MS.gene22872:CDS |
CCAGAACCTTTATAGTGTAA+AGG | 0.437419 | 7.4:-1914520 | None:intergenic |
AAACTGAGAACCATTAGTAT+TGG | 0.443961 | 7.4:-1914701 | None:intergenic |
TTTACCAAAGGGAATGGTAC+TGG | 0.450711 | 7.4:+1914586 | MS.gene22872:CDS |
TTTGTACCTCAAAGACTCAA+TGG | 0.453659 | 7.4:+1914728 | MS.gene22872:CDS |
AATTCTGGACCCAATACTAA+TGG | 0.454102 | 7.4:+1914691 | MS.gene22872:CDS |
GGCACTCTGCACAGGAGAAA+GGG | 0.455813 | 7.4:+1914477 | MS.gene22872:CDS |
TCCTCCAGTACCATTCCCTT+TGG | 0.468424 | 7.4:-1914590 | None:intergenic |
GGGCACTCTGCACAGGAGAA+AGG | 0.484529 | 7.4:+1914476 | MS.gene22872:CDS |
GCATGTTGTATTTGGAAAAG+TGG | 0.496708 | 7.4:+1914762 | MS.gene22872:CDS |
AAATGGTAGGACATCAGAAC+AGG | 0.503914 | 7.4:+1914831 | MS.gene22872:CDS |
ATTCCAGAGTTTATGTGTCA+AGG | 0.523820 | 7.4:+1914556 | MS.gene22872:CDS |
TTGTGAACCAACCTTCTCCA+TGG | 0.533815 | 7.4:-1914809 | None:intergenic |
TGTAACCATGTCAAATCCAA+AGG | 0.535644 | 7.4:+1914360 | None:intergenic |
CTAATTGGAAGAATGAAAGC+TGG | 0.537372 | 7.4:+1914397 | MS.gene22872:CDS |
TGGACCTGGTATTCTTTCCA+TGG | 0.538902 | 7.4:+1914666 | MS.gene22872:CDS |
CCTCCTTGACACATAAACTC+TGG | 0.550153 | 7.4:-1914559 | None:intergenic |
CTGGAGGAGAGTCTATATAT+GGG | 0.556827 | 7.4:+1914605 | MS.gene22872:CDS |
AAGCTGAAGCATACTGGACC+TGG | 0.564886 | 7.4:+1914652 | MS.gene22872:CDS |
ATACGATGTAGTTCAGGCCA+TGG | 0.568695 | 7.4:+1914792 | MS.gene22872:CDS |
TGTAGTTCAGGCCATGGAGA+AGG | 0.577243 | 7.4:+1914798 | MS.gene22872:CDS |
GAAAGCTGGAAAGATAGTAA+TGG | 0.582740 | 7.4:+1914411 | MS.gene22872:CDS |
TTTGCCATGGAAAGAATACC+AGG | 0.593087 | 7.4:-1914670 | None:intergenic |
GTTCAGGCCATGGAGAAGGT+TGG | 0.594001 | 7.4:+1914802 | MS.gene22872:CDS |
GAAAACCTTTGGATTTGACA+TGG | 0.607760 | 7.4:-1914365 | None:intergenic |
GTATTTGGAAAAGTGGTCGA+AGG | 0.607981 | 7.4:+1914769 | MS.gene22872:CDS |
ATTGGGTCCAGAATTTGCCA+TGG | 0.609063 | 7.4:-1914683 | None:intergenic |
CAGGTTGTCATCGAAGATTG+TGG | 0.618674 | 7.4:+1914850 | MS.gene22872:CDS |
AGGTTGGTTCACAAAATGGT+AGG | 0.628168 | 7.4:+1914818 | MS.gene22872:CDS |
GCACTCTGCACAGGAGAAAG+GGG | 0.634116 | 7.4:+1914478 | MS.gene22872:CDS |
ACCAAAGGGAATGGTACTGG+AGG | 0.652379 | 7.4:+1914589 | MS.gene22872:CDS |
GAAAGGGGTATTGGGCAATG+CGG | 0.661531 | 7.4:+1914493 | MS.gene22872:CDS |
CCAGAGTTTATGTGTCAAGG+AGG | 0.669137 | 7.4:+1914559 | MS.gene22872:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAACAGCTGAAAATTTTA+GGG | + | chr7.4:1914456-1914475 | MS.gene22872:CDS | 20.0% |
!!! | GTTTTCTTTGATATTCTAAT+TGG | + | chr7.4:1914382-1914401 | MS.gene22872:CDS | 20.0% |
!!! | TAAAATTTTCAGCTGTTTTT+GGG | - | chr7.4:1914456-1914475 | None:intergenic | 20.0% |
! | AGAATATCAAAGAAAACCTT+TGG | - | chr7.4:1914379-1914398 | None:intergenic | 25.0% |
!! | CAAAAACAGCTGAAAATTTT+AGG | + | chr7.4:1914455-1914474 | MS.gene22872:CDS | 25.0% |
!!! | AAAATTTTCAGCTGTTTTTG+GGG | - | chr7.4:1914455-1914474 | None:intergenic | 25.0% |
!!! | CTAAAATTTTCAGCTGTTTT+TGG | - | chr7.4:1914457-1914476 | None:intergenic | 25.0% |
AAACTGAGAACCATTAGTAT+TGG | - | chr7.4:1914704-1914723 | None:intergenic | 30.0% | |
AACTGAGAACCATTAGTATT+GGG | - | chr7.4:1914703-1914722 | None:intergenic | 30.0% | |
GGTAAACCTTTACACTATAA+AGG | + | chr7.4:1914514-1914533 | MS.gene22872:CDS | 30.0% | |
AATTCTGGACCCAATACTAA+TGG | + | chr7.4:1914691-1914710 | MS.gene22872:CDS | 35.0% | |
AATTTCAAGCTGAAGCATAC+TGG | + | chr7.4:1914646-1914665 | MS.gene22872:CDS | 35.0% | |
ATTCCAGAGTTTATGTGTCA+AGG | + | chr7.4:1914556-1914575 | MS.gene22872:CDS | 35.0% | |
ATTCTTTCCATGGCAAATTC+TGG | + | chr7.4:1914676-1914695 | MS.gene22872:CDS | 35.0% | |
CCAGAACCTTTATAGTGTAA+AGG | - | chr7.4:1914523-1914542 | None:intergenic | 35.0% | |
CCTTTACACTATAAAGGTTC+TGG | + | chr7.4:1914520-1914539 | MS.gene22872:CDS | 35.0% | |
CTAATTGGAAGAATGAAAGC+TGG | + | chr7.4:1914397-1914416 | MS.gene22872:CDS | 35.0% | |
GAAAGCTGGAAAGATAGTAA+TGG | + | chr7.4:1914411-1914430 | MS.gene22872:CDS | 35.0% | |
GCATGTTGTATTTGGAAAAG+TGG | + | chr7.4:1914762-1914781 | MS.gene22872:CDS | 35.0% | |
TTTGTACCTCAAAGACTCAA+TGG | + | chr7.4:1914728-1914747 | MS.gene22872:CDS | 35.0% | |
! | AAGGAGGAGATTTTACCAAA+GGG | + | chr7.4:1914575-1914594 | MS.gene22872:CDS | 35.0% |
! | GATGGAAAGCATGTTGTATT+TGG | + | chr7.4:1914754-1914773 | MS.gene22872:CDS | 35.0% |
AAATGGTAGGACATCAGAAC+AGG | + | chr7.4:1914831-1914850 | MS.gene22872:CDS | 40.0% | |
ACTGGAGGAGAGTCTATATA+TGG | + | chr7.4:1914604-1914623 | MS.gene22872:CDS | 40.0% | |
ATCAAGCCATTGAGTCTTTG+AGG | - | chr7.4:1914737-1914756 | None:intergenic | 40.0% | |
CTGGAGGAGAGTCTATATAT+GGG | + | chr7.4:1914605-1914624 | MS.gene22872:CDS | 40.0% | |
GTATTTGGAAAAGTGGTCGA+AGG | + | chr7.4:1914769-1914788 | MS.gene22872:CDS | 40.0% | |
TCAAAGACTCAATGGCTTGA+TGG | + | chr7.4:1914736-1914755 | MS.gene22872:CDS | 40.0% | |
TTTACCAAAGGGAATGGTAC+TGG | + | chr7.4:1914586-1914605 | MS.gene22872:CDS | 40.0% | |
TTTGCCATGGAAAGAATACC+AGG | - | chr7.4:1914673-1914692 | None:intergenic | 40.0% | |
! | AGGTTGGTTCACAAAATGGT+AGG | + | chr7.4:1914818-1914837 | MS.gene22872:CDS | 40.0% |
! | CAAGGAGGAGATTTTACCAA+AGG | + | chr7.4:1914574-1914593 | MS.gene22872:CDS | 40.0% |
! | GAGAAGGTTGGTTCACAAAA+TGG | + | chr7.4:1914814-1914833 | MS.gene22872:CDS | 40.0% |
! | GGAGATTTTACCAAAGGGAA+TGG | + | chr7.4:1914580-1914599 | MS.gene22872:CDS | 40.0% |
ATACGATGTAGTTCAGGCCA+TGG | + | chr7.4:1914792-1914811 | MS.gene22872:CDS | 45.0% | |
ATTGGGTCCAGAATTTGCCA+TGG | - | chr7.4:1914686-1914705 | None:intergenic | 45.0% | |
CAGGTTGTCATCGAAGATTG+TGG | + | chr7.4:1914850-1914869 | MS.gene22872:CDS | 45.0% | |
CCAGAGTTTATGTGTCAAGG+AGG | + | chr7.4:1914559-1914578 | MS.gene22872:CDS | 45.0% | |
CCTCCTTGACACATAAACTC+TGG | - | chr7.4:1914562-1914581 | None:intergenic | 45.0% | |
CGAAGGATACGATGTAGTTC+AGG | + | chr7.4:1914786-1914805 | MS.gene22872:CDS | 45.0% | |
TGGACCTGGTATTCTTTCCA+TGG | + | chr7.4:1914666-1914685 | MS.gene22872:CDS | 45.0% | |
TTGTGAACCAACCTTCTCCA+TGG | - | chr7.4:1914812-1914831 | None:intergenic | 45.0% | |
!!! | AATTTTAGGGCACTCTGCAC+AGG | + | chr7.4:1914469-1914488 | MS.gene22872:CDS | 45.0% |
AAGCTGAAGCATACTGGACC+TGG | + | chr7.4:1914652-1914671 | MS.gene22872:CDS | 50.0% | |
TCCTCCAGTACCATTCCCTT+TGG | - | chr7.4:1914593-1914612 | None:intergenic | 50.0% | |
TGTAGTTCAGGCCATGGAGA+AGG | + | chr7.4:1914798-1914817 | MS.gene22872:CDS | 50.0% | |
! | ACCAAAGGGAATGGTACTGG+AGG | + | chr7.4:1914589-1914608 | MS.gene22872:CDS | 50.0% |
! | TGCACAGGAGAAAGGGGTAT+TGG | + | chr7.4:1914484-1914503 | MS.gene22872:CDS | 50.0% |
!! | GAAAGGGGTATTGGGCAATG+CGG | + | chr7.4:1914493-1914512 | MS.gene22872:CDS | 50.0% |
!! | GCACAGGAGAAAGGGGTATT+GGG | + | chr7.4:1914485-1914504 | MS.gene22872:CDS | 50.0% |
GCACTCTGCACAGGAGAAAG+GGG | + | chr7.4:1914478-1914497 | MS.gene22872:CDS | 55.0% | |
GGCACTCTGCACAGGAGAAA+GGG | + | chr7.4:1914477-1914496 | MS.gene22872:CDS | 55.0% | |
GTTCAGGCCATGGAGAAGGT+TGG | + | chr7.4:1914802-1914821 | MS.gene22872:CDS | 55.0% | |
GGGCACTCTGCACAGGAGAA+AGG | + | chr7.4:1914476-1914495 | MS.gene22872:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 1914367 | 1914885 | 1914367 | ID=MS.gene22872 |
chr7.4 | mRNA | 1914367 | 1914885 | 1914367 | ID=MS.gene22872.t1;Parent=MS.gene22872 |
chr7.4 | exon | 1914367 | 1914885 | 1914367 | ID=MS.gene22872.t1.exon1;Parent=MS.gene22872.t1 |
chr7.4 | CDS | 1914367 | 1914885 | 1914367 | ID=cds.MS.gene22872.t1;Parent=MS.gene22872.t1 |
Gene Sequence |
Protein sequence |