AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019395

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019395.t1 MTR_8g035540 96.037 328 13 0 14 341 1 328 0.0 647
MS.gene019395.t1 MTR_8g035520 74.398 332 80 2 1 332 1 327 4.96e-176 491
MS.gene019395.t1 MTR_6g464510 48.765 324 150 5 12 329 13 326 9.24e-106 313
MS.gene019395.t1 MTR_6g464280 48.457 324 147 6 15 329 12 324 2.18e-101 301
MS.gene019395.t1 MTR_6g464320 46.626 326 154 6 13 329 11 325 1.45e-93 282
MS.gene019395.t1 MTR_1g102160 47.239 326 155 7 14 331 11 327 2.17e-92 279
MS.gene019395.t1 MTR_8g035500 41.615 322 180 5 12 330 2 318 4.73e-91 275
MS.gene019395.t1 MTR_1g102170 45.679 324 155 6 9 325 25 334 2.50e-90 274
MS.gene019395.t1 MTR_0007s0520 43.807 331 161 7 7 329 11 324 2.92e-86 263
MS.gene019395.t1 MTR_6g464120 45.338 311 158 5 15 322 17 318 1.26e-84 265
MS.gene019395.t1 MTR_1g111280 35.093 322 182 9 22 329 34 342 9.14e-52 175
MS.gene019395.t1 MTR_7g406880 32.416 327 196 8 22 329 29 349 1.61e-50 172
MS.gene019395.t1 MTR_6g065430 33.856 319 191 6 22 333 26 331 3.24e-49 168
MS.gene019395.t1 MTR_6g065370 34.122 296 173 6 45 329 49 333 4.21e-48 165
MS.gene019395.t1 MTR_6g065400 34.459 296 172 6 45 329 49 333 6.71e-48 164
MS.gene019395.t1 MTR_6g065110 31.988 322 192 7 26 334 32 339 1.69e-46 161
MS.gene019395.t1 MTR_4g050140 34.416 308 189 6 26 329 17 315 2.43e-46 160
MS.gene019395.t1 MTR_7g107040 34.161 322 184 9 22 332 15 319 7.14e-46 159
MS.gene019395.t1 MTR_6g065120 32.659 346 205 7 1 329 1 335 1.09e-45 159
MS.gene019395.t1 MTR_6g065270 33.779 299 174 5 45 329 47 335 1.49e-45 159
MS.gene019395.t1 MTR_1g012430 37.288 236 131 8 18 252 9 228 1.78e-43 152
MS.gene019395.t1 MTR_4g086510 34.177 316 186 9 22 329 16 317 1.29e-42 150
MS.gene019395.t1 MTR_0007s0480 45.238 168 83 3 170 329 4 170 1.90e-41 142
MS.gene019395.t1 MTR_3g101420 32.063 315 192 10 22 329 15 314 5.40e-41 146
MS.gene019395.t1 MTR_7g056207 32.919 322 196 8 22 336 48 356 1.52e-40 145
MS.gene019395.t1 MTR_3g012440 41.081 185 107 2 69 253 74 256 2.51e-39 142
MS.gene019395.t1 MTR_1g082210 30.091 329 188 10 27 334 38 345 3.64e-37 136
MS.gene019395.t1 MTR_6g065340 30.599 317 177 8 26 329 42 328 9.38e-37 135
MS.gene019395.t1 MTR_4g086480 32.812 320 188 10 22 332 20 321 1.74e-36 134
MS.gene019395.t1 MTR_1g089310 37.104 221 116 6 77 291 98 301 6.54e-36 133
MS.gene019395.t1 MTR_1g089310 37.104 221 116 6 77 291 114 317 7.06e-36 133
MS.gene019395.t1 MTR_5g005920 38.220 191 112 4 26 213 25 212 2.81e-35 131
MS.gene019395.t1 MTR_7g093950 32.061 262 155 6 77 329 99 346 3.24e-35 131
MS.gene019395.t1 MTR_4g086540 34.555 191 113 3 26 216 30 208 6.02e-34 127
MS.gene019395.t1 MTR_1g105020 30.915 317 195 12 22 328 16 318 5.93e-33 125
MS.gene019395.t1 MTR_3g450680 31.692 325 188 12 22 329 24 331 6.38e-33 125
MS.gene019395.t1 MTR_4g086470 32.119 302 180 9 39 332 36 320 5.74e-31 119
MS.gene019395.t1 MTR_5g005850 33.471 242 144 7 22 256 21 252 4.31e-30 117
MS.gene019395.t1 MTR_1g104930 41.579 190 100 4 22 209 20 200 5.18e-30 117
MS.gene019395.t1 MTR_5g005900 35.897 195 115 5 22 211 17 206 1.30e-28 113
MS.gene019395.t1 MTR_7g051020 40.526 190 105 4 22 209 20 203 3.80e-28 112
MS.gene019395.t1 MTR_8g040860 35.678 199 121 4 22 218 24 217 6.72e-27 108
MS.gene019395.t1 MTR_6g022710 27.526 287 172 5 83 335 159 443 3.63e-26 108
MS.gene019395.t1 MTR_1g104933 40.764 157 87 3 55 209 46 198 6.03e-23 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019395.t1 AT2G45600 52.568 331 139 5 15 340 9 326 1.33e-120 351
MS.gene019395.t1 AT2G45610 45.938 320 166 4 13 329 8 323 6.38e-100 298
MS.gene019395.t1 AT5G62180 47.866 328 153 8 15 333 9 327 8.12e-93 280
MS.gene019395.t1 AT5G16080 35.452 299 178 5 22 316 36 323 8.62e-53 177
MS.gene019395.t1 AT1G68620 38.672 256 143 5 4 256 14 258 1.53e-52 177
MS.gene019395.t1 AT5G06570 35.714 308 183 8 22 321 18 318 9.10e-39 140
MS.gene019395.t1 AT5G06570 35.714 308 183 8 22 321 18 318 9.10e-39 140
MS.gene019395.t1 AT5G06570 35.714 308 183 8 22 321 33 333 1.50e-38 140
MS.gene019395.t1 AT5G06570 35.714 308 183 8 22 321 33 333 1.50e-38 140
MS.gene019395.t1 AT5G23530 30.818 318 189 10 27 334 35 331 1.03e-36 135
MS.gene019395.t1 AT1G49640 36.458 192 109 4 22 211 14 194 3.29e-36 133
MS.gene019395.t1 AT3G63010 32.601 273 156 7 77 340 99 352 9.54e-35 130
MS.gene019395.t1 AT5G27320 28.931 318 195 8 27 329 38 339 1.63e-34 129
MS.gene019395.t1 AT3G48690 32.456 228 142 5 22 245 13 232 2.48e-34 128
MS.gene019395.t1 AT1G47480 32.114 246 148 6 8 253 4 230 2.92e-33 125
MS.gene019395.t1 AT1G49650 36.126 191 115 4 22 211 69 253 1.22e-32 125
MS.gene019395.t1 AT1G49660 35.714 196 119 4 18 211 8 198 8.32e-32 122
MS.gene019395.t1 AT1G19190 31.963 219 138 5 21 233 12 225 3.18e-31 120
MS.gene019395.t1 AT3G05120 35.648 216 128 4 84 299 106 310 6.21e-31 120
MS.gene019395.t1 AT3G48700 32.743 226 136 6 28 245 19 236 7.35e-31 119
MS.gene019395.t1 AT2G03550 37.433 187 109 3 23 209 14 192 8.08e-31 119
MS.gene019395.t1 AT5G14310 32.271 251 129 6 42 253 106 354 1.58e-29 117
MS.gene019395.t1 AT3G27320 33.178 214 106 4 77 253 124 337 5.07e-28 113
MS.gene019395.t1 AT3G27320 33.178 214 106 4 77 253 156 369 6.45e-28 113

Find 113 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCAACAATGGCAGGAATT+TGG 0.210540 8.2:-63775937 None:intergenic
TGTTTGGAATTAGGTGAATT+TGG 0.218605 8.2:-63775605 None:intergenic
ATGCAGTTGATTCTCTTCTT+TGG 0.229320 8.2:+63776011 MS.gene019395:CDS
TTGCCAAGGTGCTTTGTTAA+TGG 0.257297 8.2:+63776394 MS.gene019395:CDS
AAAGGAGCTAGCGAAGATTT+TGG 0.271352 8.2:+63776447 MS.gene019395:CDS
GAGGAAGACGGTGGAGGGTT+CGG 0.288881 8.2:-63775812 None:intergenic
TGAAATCTTTGATCATTCTA+AGG 0.290499 8.2:+63776525 MS.gene019395:CDS
CACAAATTCGCCACCGCAAC+CGG 0.311175 8.2:+63775730 MS.gene019395:CDS
ATTGTGCTTTGTTTGGAATT+AGG 0.318456 8.2:-63775614 None:intergenic
AGCACGTAGACCCGTGAAAT+AGG 0.319272 8.2:-63776140 None:intergenic
AGGAAGACGGTGGAGGGTTC+GGG 0.325103 8.2:-63775811 None:intergenic
GGCAACAATGGCAGGAATTT+GGG 0.333621 8.2:-63775936 None:intergenic
GGGATCCATTGTGCTTTGTT+TGG 0.344187 8.2:-63775621 None:intergenic
GCAGGGATGGTGGAAGATAA+GGG 0.378351 8.2:-63775900 None:intergenic
AGCAGGGATGGTGGAAGATA+AGG 0.379203 8.2:-63775901 None:intergenic
TAAGGGAGGAAGGGTGGTAG+AGG 0.393535 8.2:-63775883 None:intergenic
CGGTTGCGGTGGCGAATTTG+TGG 0.395908 8.2:-63775729 None:intergenic
GACTGAATCCGAGCTTCGTT+TGG 0.401433 8.2:+63776237 MS.gene019395:CDS
ACAACTTTGGATCACGTATA+CGG 0.411261 8.2:+63776355 MS.gene019395:CDS
GTAGAGAATGATGGGGAGGT+TGG 0.417274 8.2:-63775840 None:intergenic
TCGAAGGATGGTGGCACGGT+GGG 0.424218 8.2:-63775704 None:intergenic
TATGATCCCTCGAATCTTAA+CGG 0.430500 8.2:-63776182 None:intergenic
CTTTGATAAATGTTTCTTGA+TGG 0.434816 8.2:+63776093 MS.gene019395:CDS
TGGTCTCTGTCTTTGCCCTC+AGG 0.456073 8.2:-63776316 None:intergenic
CTCTCTCCCGTTAAGATTCG+AGG 0.456764 8.2:+63776175 MS.gene019395:CDS
ATTCTCTACTTCCATGGTGG+TGG 0.458108 8.2:+63775854 MS.gene019395:CDS
ATACCCATCCTCATCAAAAC+AGG 0.463187 8.2:-63776494 None:intergenic
GTATTGCAATCCAACAACTT+TGG 0.464198 8.2:+63776342 MS.gene019395:CDS
GGAAGATAAGGGAGGAAGGG+TGG 0.467019 8.2:-63775889 None:intergenic
ACTGCATCATCGTAGGCTGC+TGG 0.469377 8.2:-63775995 None:intergenic
TTTGATAAATGTTTCTTGAT+GGG 0.469837 8.2:+63776094 MS.gene019395:CDS
GCTGCTGGGAGGCGATGCTC+AGG 0.470036 8.2:-63775980 None:intergenic
TTGGGCAGCTAATGTGGAGC+AGG 0.470169 8.2:-63775918 None:intergenic
ATGATCCCTCGAATCTTAAC+GGG 0.471461 8.2:-63776181 None:intergenic
TGGCTACGGTGGGGATCCAT+TGG 0.473221 8.2:+63776414 MS.gene019395:CDS
GCAGCGGAGGAAGACGGTGG+AGG 0.473746 8.2:-63775818 None:intergenic
CCCATCATTCTCTACTTCCA+TGG 0.477398 8.2:+63775848 MS.gene019395:CDS
ATCGAAGGATGGTGGCACGG+TGG 0.483039 8.2:-63775705 None:intergenic
TATACGTGATCCAAAGTTGT+TGG 0.491009 8.2:-63776352 None:intergenic
CCATGGAAGTAGAGAATGAT+GGG 0.492333 8.2:-63775848 None:intergenic
ATGAGATCACCTGCTGGTAA+TGG 0.493022 8.2:-63776277 None:intergenic
ATCGTTAACCAAACGAAGCT+CGG 0.493769 8.2:-63776245 None:intergenic
AGGTGCTTTGTTAATGGCTA+CGG 0.498754 8.2:+63776400 MS.gene019395:CDS
TCAACAGAGGCAACAATGGC+AGG 0.505210 8.2:-63775944 None:intergenic
CAGCTAATGTGGAGCAGGGA+TGG 0.506859 8.2:-63775913 None:intergenic
ACCATGGAAGTAGAGAATGA+TGG 0.507797 8.2:-63775849 None:intergenic
GGTTGCGGTGGCGAATTTGT+GGG 0.510694 8.2:-63775728 None:intergenic
CTACGGTGGGGATCCATTGG+TGG 0.515205 8.2:+63776417 MS.gene019395:CDS
TGGTGGAAGATAAGGGAGGA+AGG 0.516872 8.2:-63775893 None:intergenic
CTGCATCATCGTAGGCTGCT+GGG 0.517073 8.2:-63775994 None:intergenic
GATGGGGAGGTTGGCAGCGG+AGG 0.519262 8.2:-63775831 None:intergenic
AGGAATTTGGGCAGCTAATG+TGG 0.521371 8.2:-63775924 None:intergenic
TCCATTGGTGGATAAGCAAA+AGG 0.523499 8.2:+63776429 MS.gene019395:CDS
CGTATATTGCCATTACCAGC+AGG 0.526449 8.2:+63776268 MS.gene019395:CDS
ATCCAACGGAATCTGATCCA+TGG 0.529983 8.2:+63776053 MS.gene019395:CDS
TCTTAACGGGAGAGAGATCA+AGG 0.533892 8.2:-63776168 None:intergenic
AATGATGGGGAGGTTGGCAG+CGG 0.538978 8.2:-63775834 None:intergenic
GCTTTGTTAATGGCTACGGT+GGG 0.539699 8.2:+63776404 MS.gene019395:CDS
CACGTATACGGTGAAAAGAT+CGG 0.541877 8.2:+63776367 MS.gene019395:CDS
TCCACATGGTCTCTGATCCA+TGG 0.542444 8.2:-63776070 None:intergenic
ATCCATGGATCAGATTCCGT+TGG 0.545679 8.2:-63776055 None:intergenic
GGCTGCACACGGGGTGCATG+TGG 0.546061 8.2:+63776468 MS.gene019395:CDS
TTCTTGATGGGAGACAGTGC+CGG 0.548245 8.2:+63776106 MS.gene019395:CDS
TGCTTTGTTAATGGCTACGG+TGG 0.551058 8.2:+63776403 MS.gene019395:CDS
GAAATAGGCTATATTACCTC+CGG 0.551917 8.2:-63776125 None:intergenic
AGGTAATATAGCCTATTTCA+CGG 0.552620 8.2:+63776129 MS.gene019395:CDS
CAGCGGAGGAAGACGGTGGA+GGG 0.554188 8.2:-63775817 None:intergenic
CGAAGGATGGTGGCACGGTG+GGG 0.556375 8.2:-63775703 None:intergenic
AAAATCAAACTAAACTCTGA+TGG 0.559679 8.2:+63775656 MS.gene019395:CDS
TGGTCCCTGTGTTTGCCTGA+GGG 0.566573 8.2:+63776301 MS.gene019395:CDS
GTGGTCCCTGTGTTTGCCTG+AGG 0.571411 8.2:+63776300 MS.gene019395:CDS
TGGCGAATTTGTGGGATCGA+AGG 0.576164 8.2:-63775720 None:intergenic
AGGTTGGCAGCGGAGGAAGA+CGG 0.578445 8.2:-63775824 None:intergenic
GAATTTGTGGGATCGAAGGA+TGG 0.578551 8.2:-63775716 None:intergenic
CTTTGCCCTCAGGCAAACAC+AGG 0.580745 8.2:-63776306 None:intergenic
GGTAATATAGCCTATTTCAC+GGG 0.582524 8.2:+63776130 MS.gene019395:CDS
GGGATCGAAGGATGGTGGCA+CGG 0.586269 8.2:-63775708 None:intergenic
GGTGGAAGATAAGGGAGGAA+GGG 0.587951 8.2:-63775892 None:intergenic
GTTCGGGAGGAAGAGACGAA+TGG 0.588388 8.2:-63775795 None:intergenic
TCTTTAGAGAGAGCCGGTTG+CGG 0.590395 8.2:-63775743 None:intergenic
TTAGAGAGAGCCGGTTGCGG+TGG 0.595065 8.2:-63775740 None:intergenic
CTAATGTGGAGCAGGGATGG+TGG 0.596208 8.2:-63775910 None:intergenic
AAAAGATCGGACGGTTGCCA+AGG 0.596761 8.2:+63776380 MS.gene019395:CDS
AAGACGGTGGAGGGTTCGGG+AGG 0.598115 8.2:-63775808 None:intergenic
GGAATGTCTTTAGAGAGAGC+CGG 0.604854 8.2:-63775749 None:intergenic
AGAATCAACTGCATCATCGT+AGG 0.614662 8.2:-63776002 None:intergenic
AAGTGTTACATAGAGGATTG+AGG 0.616571 8.2:-63776604 None:intergenic
TTGGCAGCGGAGGAAGACGG+TGG 0.617148 8.2:-63775821 None:intergenic
TCTCTCCCGTTAAGATTCGA+GGG 0.617230 8.2:+63776176 MS.gene019395:CDS
ATCCCAAGCTCAAAATCCAA+CGG 0.621724 8.2:+63776039 MS.gene019395:CDS
TACCAGCAGGTGATCTCATG+TGG 0.621833 8.2:+63776281 MS.gene019395:CDS
CGGGAGGAAGAGACGAATGG+AGG 0.622270 8.2:-63775792 None:intergenic
CTTTGTTAATGGCTACGGTG+GGG 0.624764 8.2:+63776405 MS.gene019395:CDS
ATCATTCTCTACTTCCATGG+TGG 0.627271 8.2:+63775851 MS.gene019395:CDS
TCCCACGAAGTGTTACATAG+AGG 0.628069 8.2:-63776611 None:intergenic
ATAATCAACAGAGGCAACAA+TGG 0.631313 8.2:-63775948 None:intergenic
TGGGCAGCTAATGTGGAGCA+GGG 0.644565 8.2:-63775917 None:intergenic
GACCACATGAGATCACCTGC+TGG 0.646204 8.2:-63776283 None:intergenic
TTGTTGGATTGCAATACTCG+TGG 0.646636 8.2:-63776336 None:intergenic
TTTGTGGGATCGAAGGATGG+TGG 0.649200 8.2:-63775713 None:intergenic
AACATTTATCAAAGTCCACA+TGG 0.649642 8.2:-63776084 None:intergenic
TTGATGGGAGACAGTGCCGG+AGG 0.655276 8.2:+63776109 MS.gene019395:CDS
GGAAGTAGAGAATGATGGGG+AGG 0.665711 8.2:-63775844 None:intergenic
TAATTCCAAACAAAGCACAA+TGG 0.666343 8.2:+63775616 MS.gene019395:CDS
GGGATGGTGGAAGATAAGGG+AGG 0.667136 8.2:-63775897 None:intergenic
AGAGGATGAAACCACCACCA+TGG 0.674528 8.2:-63775865 None:intergenic
TCCATGGATCAGAGACCATG+TGG 0.678870 8.2:+63776069 MS.gene019395:CDS
TAGCCATTAACAAAGCACCT+TGG 0.684803 8.2:-63776397 None:intergenic
TTTGCCCTCAGGCAAACACA+GGG 0.688501 8.2:-63776305 None:intergenic
CGAGAGACGATAATCAACAG+AGG 0.723701 8.2:-63775957 None:intergenic
CATCATCGTAGGCTGCTGGG+AGG 0.726935 8.2:-63775991 None:intergenic
TATACGGTGAAAAGATCGGA+CGG 0.731375 8.2:+63776371 MS.gene019395:CDS
CATGGAAGTAGAGAATGATG+GGG 0.743084 8.2:-63775847 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGATAAATGTTTCTTGAT+GGG + chr8.2:63776094-63776113 MS.gene019395:CDS 20.0%
!!! ATGAAATATCCATTTTTTAG+TGG + chr8.2:63776205-63776224 MS.gene019395:CDS 20.0%
! AAAATCAAACTAAACTCTGA+TGG + chr8.2:63775656-63775675 MS.gene019395:CDS 25.0%
! CTTTGATAAATGTTTCTTGA+TGG + chr8.2:63776093-63776112 MS.gene019395:CDS 25.0%
! TGAAATCTTTGATCATTCTA+AGG + chr8.2:63776525-63776544 MS.gene019395:CDS 25.0%
!!! TTGATTTTGAGGAATTCATA+GGG - chr8.2:63775644-63775663 None:intergenic 25.0%
!!! TTTGATTTTGAGGAATTCAT+AGG - chr8.2:63775645-63775664 None:intergenic 25.0%
AACATTTATCAAAGTCCACA+TGG - chr8.2:63776087-63776106 None:intergenic 30.0%
AGGTAATATAGCCTATTTCA+CGG + chr8.2:63776129-63776148 MS.gene019395:CDS 30.0%
TAATTCCAAACAAAGCACAA+TGG + chr8.2:63775616-63775635 MS.gene019395:CDS 30.0%
! TGTTTGGAATTAGGTGAATT+TGG - chr8.2:63775608-63775627 None:intergenic 30.0%
!! ATTGTGCTTTGTTTGGAATT+AGG - chr8.2:63775617-63775636 None:intergenic 30.0%
!!! CAGAGTTTAGTTTGATTTTG+AGG - chr8.2:63775655-63775674 None:intergenic 30.0%
ACAACTTTGGATCACGTATA+CGG + chr8.2:63776355-63776374 MS.gene019395:CDS 35.0%
ATAATCAACAGAGGCAACAA+TGG - chr8.2:63775951-63775970 None:intergenic 35.0%
CTCTGAACTCCACTAAAAAA+TGG - chr8.2:63776217-63776236 None:intergenic 35.0%
GAAATAGGCTATATTACCTC+CGG - chr8.2:63776128-63776147 None:intergenic 35.0%
GGTAATATAGCCTATTTCAC+GGG + chr8.2:63776130-63776149 MS.gene019395:CDS 35.0%
GTATTGCAATCCAACAACTT+TGG + chr8.2:63776342-63776361 MS.gene019395:CDS 35.0%
TATACGTGATCCAAAGTTGT+TGG - chr8.2:63776355-63776374 None:intergenic 35.0%
TATGATCCCTCGAATCTTAA+CGG - chr8.2:63776185-63776204 None:intergenic 35.0%
! ATGCAGTTGATTCTCTTCTT+TGG + chr8.2:63776011-63776030 MS.gene019395:CDS 35.0%
!!! CATTTTTTAGTGGAGTTCAG+AGG + chr8.2:63776215-63776234 MS.gene019395:CDS 35.0%
ACCATGGAAGTAGAGAATGA+TGG - chr8.2:63775852-63775871 None:intergenic 40.0%
AGAATCAACTGCATCATCGT+AGG - chr8.2:63776005-63776024 None:intergenic 40.0%
ATACCCATCCTCATCAAAAC+AGG - chr8.2:63776497-63776516 None:intergenic 40.0%
ATCATTCTCTACTTCCATGG+TGG + chr8.2:63775851-63775870 MS.gene019395:CDS 40.0%
ATCCCAAGCTCAAAATCCAA+CGG + chr8.2:63776039-63776058 MS.gene019395:CDS 40.0%
ATCGTTAACCAAACGAAGCT+CGG - chr8.2:63776248-63776267 None:intergenic 40.0%
ATGATCCCTCGAATCTTAAC+GGG - chr8.2:63776184-63776203 None:intergenic 40.0%
CACGTATACGGTGAAAAGAT+CGG + chr8.2:63776367-63776386 MS.gene019395:CDS 40.0%
CATGGAAGTAGAGAATGATG+GGG - chr8.2:63775850-63775869 None:intergenic 40.0%
CCATGGAAGTAGAGAATGAT+GGG - chr8.2:63775851-63775870 None:intergenic 40.0%
TATACGGTGAAAAGATCGGA+CGG + chr8.2:63776371-63776390 MS.gene019395:CDS 40.0%
TTGTTGGATTGCAATACTCG+TGG - chr8.2:63776339-63776358 None:intergenic 40.0%
! AAAGGAGCTAGCGAAGATTT+TGG + chr8.2:63776447-63776466 MS.gene019395:CDS 40.0%
! AGGTGCTTTGTTAATGGCTA+CGG + chr8.2:63776400-63776419 MS.gene019395:CDS 40.0%
! ATTCCGTTGGATTTTGAGCT+TGG - chr8.2:63776045-63776064 None:intergenic 40.0%
! TAGCCATTAACAAAGCACCT+TGG - chr8.2:63776400-63776419 None:intergenic 40.0%
! TCCATTGGTGGATAAGCAAA+AGG + chr8.2:63776429-63776448 MS.gene019395:CDS 40.0%
! TCCTTTTGCTTATCCACCAA+TGG - chr8.2:63776433-63776452 None:intergenic 40.0%
! TTCCGTTGGATTTTGAGCTT+GGG - chr8.2:63776044-63776063 None:intergenic 40.0%
! TTGCCAAGGTGCTTTGTTAA+TGG + chr8.2:63776394-63776413 MS.gene019395:CDS 40.0%
! TTGGATTTTGAGCTTGGGAT+TGG - chr8.2:63776039-63776058 None:intergenic 40.0%
!!! AGTCCTGTTTTGATGAGGAT+GGG + chr8.2:63776491-63776510 MS.gene019395:CDS 40.0%
AGGAATTTGGGCAGCTAATG+TGG - chr8.2:63775927-63775946 None:intergenic 45.0%
AGGCAACAATGGCAGGAATT+TGG - chr8.2:63775940-63775959 None:intergenic 45.0%
ATCCAACGGAATCTGATCCA+TGG + chr8.2:63776053-63776072 MS.gene019395:CDS 45.0%
ATCCATGGATCAGATTCCGT+TGG - chr8.2:63776058-63776077 None:intergenic 45.0%
ATGAGATCACCTGCTGGTAA+TGG - chr8.2:63776280-63776299 None:intergenic 45.0%
ATTCTCTACTTCCATGGTGG+TGG + chr8.2:63775854-63775873 MS.gene019395:CDS 45.0%
CCCATCATTCTCTACTTCCA+TGG + chr8.2:63775848-63775867 MS.gene019395:CDS 45.0%
CGAGAGACGATAATCAACAG+AGG - chr8.2:63775960-63775979 None:intergenic 45.0%
CGTATATTGCCATTACCAGC+AGG + chr8.2:63776268-63776287 MS.gene019395:CDS 45.0%
CTTTGTTAATGGCTACGGTG+GGG + chr8.2:63776405-63776424 MS.gene019395:CDS 45.0%
GAATTTGTGGGATCGAAGGA+TGG - chr8.2:63775719-63775738 None:intergenic 45.0%
GGCAACAATGGCAGGAATTT+GGG - chr8.2:63775939-63775958 None:intergenic 45.0%
TCTCTCCCGTTAAGATTCGA+GGG + chr8.2:63776176-63776195 MS.gene019395:CDS 45.0%
TCTTAACGGGAGAGAGATCA+AGG - chr8.2:63776171-63776190 None:intergenic 45.0%
! GCTTTGTTAATGGCTACGGT+GGG + chr8.2:63776404-63776423 MS.gene019395:CDS 45.0%
! GGAATGTCTTTAGAGAGAGC+CGG - chr8.2:63775752-63775771 None:intergenic 45.0%
! GGGATCCATTGTGCTTTGTT+TGG - chr8.2:63775624-63775643 None:intergenic 45.0%
! GTTTTCGCAGCGGTGTTTAA+GGG - chr8.2:63775773-63775792 None:intergenic 45.0%
! TGCTTTGTTAATGGCTACGG+TGG + chr8.2:63776403-63776422 MS.gene019395:CDS 45.0%
!!! GAGTCCTGTTTTGATGAGGA+TGG + chr8.2:63776490-63776509 MS.gene019395:CDS 45.0%
!!! TGTGGAGTCCTGTTTTGATG+AGG + chr8.2:63776486-63776505 MS.gene019395:CDS 45.0%
AAAAGATCGGACGGTTGCCA+AGG + chr8.2:63776380-63776399 MS.gene019395:CDS 50.0%
AGAGGATGAAACCACCACCA+TGG - chr8.2:63775868-63775887 None:intergenic 50.0%
AGCACGTAGACCCGTGAAAT+AGG - chr8.2:63776143-63776162 None:intergenic 50.0%
CTCTCTCCCGTTAAGATTCG+AGG + chr8.2:63776175-63776194 MS.gene019395:CDS 50.0%
GACTGAATCCGAGCTTCGTT+TGG + chr8.2:63776237-63776256 MS.gene019395:CDS 50.0%
GGTGGAAGATAAGGGAGGAA+GGG - chr8.2:63775895-63775914 None:intergenic 50.0%
TACCAGCAGGTGATCTCATG+TGG + chr8.2:63776281-63776300 MS.gene019395:CDS 50.0%
TCAACAGAGGCAACAATGGC+AGG - chr8.2:63775947-63775966 None:intergenic 50.0%
TCCACATGGTCTCTGATCCA+TGG - chr8.2:63776073-63776092 None:intergenic 50.0%
TCCATGGATCAGAGACCATG+TGG + chr8.2:63776069-63776088 MS.gene019395:CDS 50.0%
TGGCGAATTTGTGGGATCGA+AGG - chr8.2:63775723-63775742 None:intergenic 50.0%
TGGTGGAAGATAAGGGAGGA+AGG - chr8.2:63775896-63775915 None:intergenic 50.0%
TTCTTGATGGGAGACAGTGC+CGG + chr8.2:63776106-63776125 MS.gene019395:CDS 50.0%
TTTGCCCTCAGGCAAACACA+GGG - chr8.2:63776308-63776327 None:intergenic 50.0%
TTTGTGGGATCGAAGGATGG+TGG - chr8.2:63775716-63775735 None:intergenic 50.0%
! ACGAATGGAGGTTTTCGCAG+CGG - chr8.2:63775783-63775802 None:intergenic 50.0%
! GGAAGTAGAGAATGATGGGG+AGG - chr8.2:63775847-63775866 None:intergenic 50.0%
! GGTTTTCGCAGCGGTGTTTA+AGG - chr8.2:63775774-63775793 None:intergenic 50.0%
! GTAGAGAATGATGGGGAGGT+TGG - chr8.2:63775843-63775862 None:intergenic 50.0%
! TCTTTAGAGAGAGCCGGTTG+CGG - chr8.2:63775746-63775765 None:intergenic 50.0%
!! AGCAGGGATGGTGGAAGATA+AGG - chr8.2:63775904-63775923 None:intergenic 50.0%
!! GCAGGGATGGTGGAAGATAA+GGG - chr8.2:63775903-63775922 None:intergenic 50.0%
!!! CGAAGATTTTGGCTGCACAC+GGG + chr8.2:63776458-63776477 MS.gene019395:CDS 50.0%
!!! GAAGATTTTGGCTGCACACG+GGG + chr8.2:63776459-63776478 MS.gene019395:CDS 50.0%
!!! GCGAAGATTTTGGCTGCACA+CGG + chr8.2:63776457-63776476 MS.gene019395:CDS 50.0%
ACTGCATCATCGTAGGCTGC+TGG - chr8.2:63775998-63776017 None:intergenic 55.0%
CACAAATTCGCCACCGCAAC+CGG + chr8.2:63775730-63775749 MS.gene019395:CDS 55.0%
CAGCTAATGTGGAGCAGGGA+TGG - chr8.2:63775916-63775935 None:intergenic 55.0%
CTAATGTGGAGCAGGGATGG+TGG - chr8.2:63775913-63775932 None:intergenic 55.0%
CTGCATCATCGTAGGCTGCT+GGG - chr8.2:63775997-63776016 None:intergenic 55.0%
CTTTGCCCTCAGGCAAACAC+AGG - chr8.2:63776309-63776328 None:intergenic 55.0%
GACCACATGAGATCACCTGC+TGG - chr8.2:63776286-63776305 None:intergenic 55.0%
GGAAGATAAGGGAGGAAGGG+TGG - chr8.2:63775892-63775911 None:intergenic 55.0%
GGTTGCGGTGGCGAATTTGT+GGG - chr8.2:63775731-63775750 None:intergenic 55.0%
GTTCGGGAGGAAGAGACGAA+TGG - chr8.2:63775798-63775817 None:intergenic 55.0%
TAAGGGAGGAAGGGTGGTAG+AGG - chr8.2:63775886-63775905 None:intergenic 55.0%
TGGGCAGCTAATGTGGAGCA+GGG - chr8.2:63775920-63775939 None:intergenic 55.0%
TGGTCCCTGTGTTTGCCTGA+GGG + chr8.2:63776301-63776320 MS.gene019395:CDS 55.0%
TGGTCTCTGTCTTTGCCCTC+AGG - chr8.2:63776319-63776338 None:intergenic 55.0%
TTGGGCAGCTAATGTGGAGC+AGG - chr8.2:63775921-63775940 None:intergenic 55.0%
! AATGATGGGGAGGTTGGCAG+CGG - chr8.2:63775837-63775856 None:intergenic 55.0%
!! GGGATGGTGGAAGATAAGGG+AGG - chr8.2:63775900-63775919 None:intergenic 55.0%
AGGAAGACGGTGGAGGGTTC+GGG - chr8.2:63775814-63775833 None:intergenic 60.0%
AGGTTGGCAGCGGAGGAAGA+CGG - chr8.2:63775827-63775846 None:intergenic 60.0%
CATCATCGTAGGCTGCTGGG+AGG - chr8.2:63775994-63776013 None:intergenic 60.0%
CGGGAGGAAGAGACGAATGG+AGG - chr8.2:63775795-63775814 None:intergenic 60.0%
CGGTTGCGGTGGCGAATTTG+TGG - chr8.2:63775732-63775751 None:intergenic 60.0%
CTACGGTGGGGATCCATTGG+TGG + chr8.2:63776417-63776436 MS.gene019395:CDS 60.0%
GAGGAAGACGGTGGAGGGTT+CGG - chr8.2:63775815-63775834 None:intergenic 60.0%
GTGGTCCCTGTGTTTGCCTG+AGG + chr8.2:63776300-63776319 MS.gene019395:CDS 60.0%
TGGCTACGGTGGGGATCCAT+TGG + chr8.2:63776414-63776433 MS.gene019395:CDS 60.0%
TTAGAGAGAGCCGGTTGCGG+TGG - chr8.2:63775743-63775762 None:intergenic 60.0%
! ATCGAAGGATGGTGGCACGG+TGG - chr8.2:63775708-63775727 None:intergenic 60.0%
! GGGATCGAAGGATGGTGGCA+CGG - chr8.2:63775711-63775730 None:intergenic 60.0%
! TCGAAGGATGGTGGCACGGT+GGG - chr8.2:63775707-63775726 None:intergenic 60.0%
! TTGATGGGAGACAGTGCCGG+AGG + chr8.2:63776109-63776128 MS.gene019395:CDS 60.0%
AAGACGGTGGAGGGTTCGGG+AGG - chr8.2:63775811-63775830 None:intergenic 65.0%
CAGCGGAGGAAGACGGTGGA+GGG - chr8.2:63775820-63775839 None:intergenic 65.0%
TTGGCAGCGGAGGAAGACGG+TGG - chr8.2:63775824-63775843 None:intergenic 65.0%
! CGAAGGATGGTGGCACGGTG+GGG - chr8.2:63775706-63775725 None:intergenic 65.0%
GATGGGGAGGTTGGCAGCGG+AGG - chr8.2:63775834-63775853 None:intergenic 70.0%
GCAGCGGAGGAAGACGGTGG+AGG - chr8.2:63775821-63775840 None:intergenic 70.0%
GCTGCTGGGAGGCGATGCTC+AGG - chr8.2:63775983-63776002 None:intergenic 70.0%
GGCTGCACACGGGGTGCATG+TGG + chr8.2:63776468-63776487 MS.gene019395:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 63775596 63776621 63775596 ID=MS.gene019395
chr8.2 mRNA 63775596 63776621 63775596 ID=MS.gene019395.t1;Parent=MS.gene019395
chr8.2 exon 63775596 63776621 63775596 ID=MS.gene019395.t1.exon1;Parent=MS.gene019395.t1
chr8.2 CDS 63775596 63776621 63775596 ID=cds.MS.gene019395.t1;Parent=MS.gene019395.t1
Gene Sequence

>MS.gene019395

ATGGCAGAACCAAATTCACCTAATTCCAAACAAAGCACAATGGATCCCTATGAATTCCTCAAAATCAAACTAAACTCTGATGGTTCACTAACAAGAAACTACATTGTCCCCACCGTGCCACCATCCTTCGATCCCACAAATTCGCCACCGCAACCGGCTCTCTCTAAAGACATTCCCTTAAACACCGCTGCGAAAACCTCCATTCGTCTCTTCCTCCCGAACCCTCCACCGTCTTCCTCCGCTGCCAACCTCCCCATCATTCTCTACTTCCATGGTGGTGGTTTCATCCTCTACCACCCTTCCTCCCTTATCTTCCACCATCCCTGCTCCACATTAGCTGCCCAAATTCCTGCCATTGTTGCCTCTGTTGATTATCGTCTCTCGCCTGAGCATCGCCTCCCAGCAGCCTACGATGATGCAGTTGATTCTCTTCTTTGGCTCCAATCCCAAGCTCAAAATCCAACGGAATCTGATCCATGGATCAGAGACCATGTGGACTTTGATAAATGTTTCTTGATGGGAGACAGTGCCGGAGGTAATATAGCCTATTTCACGGGTCTACGTGCTCTCGACCTTGATCTCTCTCCCGTTAAGATTCGAGGGATCATAATGAAATATCCATTTTTTAGTGGAGTTCAGAGGACTGAATCCGAGCTTCGTTTGGTTAACGATCGTATATTGCCATTACCAGCAGGTGATCTCATGTGGTCCCTGTGTTTGCCTGAGGGCAAAGACAGAGACCACGAGTATTGCAATCCAACAACTTTGGATCACGTATACGGTGAAAAGATCGGACGGTTGCCAAGGTGCTTTGTTAATGGCTACGGTGGGGATCCATTGGTGGATAAGCAAAAGGAGCTAGCGAAGATTTTGGCTGCACACGGGGTGCATGTGGAGTCCTGTTTTGATGAGGATGGGTATCATGCTGTTGAAATCTTTGATCATTCTAAGGCACAAGTTTTGCTTGATAATGTTAAGAAATTTATACTCTCTGCTGTTTCTGTTGCTCCTCAATCCTCTATGTAA
Protein sequence

>MS.gene019395.t1

MAEPNSPNSKQSTMDPYEFLKIKLNSDGSLTRNYIVPTVPPSFDPTNSPPQPALSKDIPLNTAAKTSIRLFLPNPPPSSSAANLPIILYFHGGGFILYHPSSLIFHHPCSTLAAQIPAIVASVDYRLSPEHRLPAAYDDAVDSLLWLQSQAQNPTESDPWIRDHVDFDKCFLMGDSAGGNIAYFTGLRALDLDLSPVKIRGIIMKYPFFSGVQRTESELRLVNDRILPLPAGDLMWSLCLPEGKDRDHEYCNPTTLDHVYGEKIGRLPRCFVNGYGGDPLVDKQKELAKILAAHGVHVESCFDEDGYHAVEIFDHSKAQVLLDNVKKFILSAVSVAPQSSM