Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007061.t1 | XP_013450274.1 | 93.8 | 226 | 14 | 0 | 1 | 226 | 95 | 320 | 4.50E-122 | 447.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007061.t1 | Q9FG13 | 60.4 | 225 | 85 | 3 | 1 | 222 | 102 | 325 | 4.4e-73 | 275.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007061.t1 | A0A072U3J9 | 93.8 | 226 | 14 | 0 | 1 | 226 | 95 | 320 | 3.3e-122 | 447.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022960 | MS.gene007061 | PPI |
| MS.gene007061 | MS.gene047802 | PPI |
| MS.gene007061 | MS.gene87832 | PPI |
| MS.gene007061 | MS.gene053480 | PPI |
| MS.gene007061 | MS.gene047804 | PPI |
| MS.gene37503 | MS.gene007061 | PPI |
| MS.gene23692 | MS.gene007061 | PPI |
| MS.gene23641 | MS.gene007061 | PPI |
| MS.gene053470 | MS.gene007061 | PPI |
| MS.gene007061 | MS.gene23639 | PPI |
| MS.gene007061 | MS.gene26528 | PPI |
| MS.gene053479 | MS.gene007061 | PPI |
| MS.gene007061 | MS.gene051696 | PPI |
| MS.gene87834 | MS.gene007061 | PPI |
| MS.gene019395 | MS.gene007061 | PPI |
| MS.gene007061 | MS.gene019397 | PPI |
| MS.gene26527 | MS.gene007061 | PPI |
| MS.gene007061 | MS.gene39627 | PPI |
| MS.gene007061 | MS.gene37504 | PPI |
| MS.gene39628 | MS.gene007061 | PPI |
| MS.gene047803 | MS.gene007061 | PPI |
| MS.gene26526 | MS.gene007061 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007061.t1 | MTR_7g107040 | 93.392 | 227 | 15 | 0 | 1 | 227 | 95 | 321 | 4.42e-159 | 443 |
| MS.gene007061.t1 | MTR_4g050140 | 60.538 | 223 | 86 | 2 | 1 | 222 | 94 | 315 | 6.60e-94 | 278 |
| MS.gene007061.t1 | MTR_3g012440 | 40.594 | 202 | 114 | 4 | 3 | 202 | 116 | 313 | 6.10e-46 | 155 |
| MS.gene007061.t1 | MTR_7g406880 | 35.294 | 238 | 137 | 8 | 2 | 224 | 116 | 351 | 6.11e-44 | 150 |
| MS.gene007061.t1 | MTR_1g111280 | 37.179 | 234 | 128 | 8 | 1 | 222 | 116 | 342 | 1.67e-41 | 144 |
| MS.gene007061.t1 | MTR_1g102170 | 39.048 | 210 | 116 | 5 | 2 | 206 | 122 | 324 | 1.01e-37 | 134 |
| MS.gene007061.t1 | MTR_8g035520 | 36.607 | 224 | 134 | 6 | 2 | 222 | 106 | 324 | 7.37e-36 | 129 |
| MS.gene007061.t1 | MTR_8g035540 | 36.957 | 230 | 131 | 7 | 2 | 225 | 98 | 319 | 2.79e-35 | 127 |
| MS.gene007061.t1 | MTR_1g089310 | 38.119 | 202 | 110 | 4 | 3 | 202 | 133 | 321 | 6.75e-35 | 127 |
| MS.gene007061.t1 | MTR_1g089310 | 38.119 | 202 | 110 | 4 | 3 | 202 | 149 | 337 | 7.37e-35 | 127 |
| MS.gene007061.t1 | MTR_6g464510 | 35.616 | 219 | 127 | 7 | 9 | 222 | 117 | 326 | 6.01e-34 | 124 |
| MS.gene007061.t1 | MTR_6g464280 | 37.229 | 231 | 120 | 9 | 3 | 222 | 108 | 324 | 7.45e-33 | 121 |
| MS.gene007061.t1 | MTR_7g056207 | 35.268 | 224 | 131 | 7 | 2 | 222 | 134 | 346 | 8.91e-33 | 122 |
| MS.gene007061.t1 | MTR_7g093950 | 36.765 | 204 | 115 | 6 | 3 | 202 | 134 | 327 | 1.67e-32 | 120 |
| MS.gene007061.t1 | MTR_6g464320 | 36.441 | 236 | 119 | 9 | 1 | 222 | 107 | 325 | 2.22e-32 | 120 |
| MS.gene007061.t1 | MTR_6g065370 | 32.159 | 227 | 139 | 5 | 3 | 226 | 123 | 337 | 2.73e-32 | 120 |
| MS.gene007061.t1 | MTR_1g082210 | 34.081 | 223 | 129 | 6 | 3 | 220 | 133 | 342 | 3.67e-32 | 120 |
| MS.gene007061.t1 | MTR_8g035500 | 35.556 | 225 | 135 | 8 | 2 | 223 | 101 | 318 | 4.17e-32 | 119 |
| MS.gene007061.t1 | MTR_3g450680 | 32.895 | 228 | 140 | 6 | 3 | 222 | 109 | 331 | 4.89e-32 | 119 |
| MS.gene007061.t1 | MTR_6g065270 | 32.127 | 221 | 135 | 5 | 9 | 226 | 131 | 339 | 6.11e-32 | 119 |
| MS.gene007061.t1 | MTR_3g101420 | 31.579 | 228 | 137 | 5 | 3 | 222 | 98 | 314 | 6.19e-32 | 119 |
| MS.gene007061.t1 | MTR_1g102160 | 33.761 | 234 | 133 | 8 | 2 | 224 | 105 | 327 | 1.21e-31 | 118 |
| MS.gene007061.t1 | MTR_1g105020 | 33.772 | 228 | 139 | 7 | 3 | 223 | 101 | 323 | 5.35e-31 | 116 |
| MS.gene007061.t1 | MTR_6g065430 | 30.942 | 223 | 143 | 4 | 3 | 224 | 117 | 329 | 5.74e-31 | 116 |
| MS.gene007061.t1 | MTR_6g065110 | 32.877 | 219 | 132 | 5 | 7 | 222 | 128 | 334 | 7.51e-31 | 116 |
| MS.gene007061.t1 | MTR_6g065400 | 31.718 | 227 | 140 | 5 | 3 | 226 | 123 | 337 | 1.08e-30 | 115 |
| MS.gene007061.t1 | MTR_6g464120 | 42.466 | 146 | 77 | 3 | 1 | 145 | 108 | 247 | 1.06e-29 | 115 |
| MS.gene007061.t1 | MTR_4g086510 | 32.143 | 224 | 141 | 6 | 2 | 222 | 102 | 317 | 1.19e-29 | 112 |
| MS.gene007061.t1 | MTR_6g065120 | 30.493 | 223 | 140 | 5 | 7 | 226 | 129 | 339 | 1.56e-29 | 112 |
| MS.gene007061.t1 | MTR_1g012430 | 34.783 | 184 | 114 | 3 | 3 | 186 | 93 | 270 | 3.07e-29 | 111 |
| MS.gene007061.t1 | MTR_7g051020 | 31.963 | 219 | 143 | 5 | 8 | 222 | 109 | 325 | 1.91e-28 | 109 |
| MS.gene007061.t1 | MTR_0007s0520 | 33.171 | 205 | 119 | 6 | 1 | 196 | 104 | 299 | 3.56e-28 | 108 |
| MS.gene007061.t1 | MTR_4g086480 | 30.942 | 223 | 144 | 5 | 2 | 222 | 104 | 318 | 5.03e-28 | 108 |
| MS.gene007061.t1 | MTR_5g005920 | 28.070 | 228 | 154 | 6 | 3 | 224 | 109 | 332 | 5.32e-27 | 105 |
| MS.gene007061.t1 | MTR_6g065340 | 29.464 | 224 | 133 | 5 | 3 | 226 | 134 | 332 | 1.25e-26 | 105 |
| MS.gene007061.t1 | MTR_8g040860 | 30.667 | 225 | 148 | 5 | 2 | 222 | 108 | 328 | 2.53e-26 | 104 |
| MS.gene007061.t1 | MTR_5g005850 | 31.466 | 232 | 140 | 7 | 3 | 223 | 106 | 329 | 4.53e-25 | 100 |
| MS.gene007061.t1 | MTR_1g104933 | 33.152 | 184 | 109 | 5 | 8 | 186 | 104 | 278 | 1.17e-24 | 99.4 |
| MS.gene007061.t1 | MTR_6g022710 | 30.672 | 238 | 123 | 8 | 3 | 205 | 188 | 418 | 1.82e-24 | 100 |
| MS.gene007061.t1 | MTR_4g086470 | 32.432 | 185 | 117 | 4 | 2 | 186 | 103 | 279 | 5.81e-24 | 97.8 |
| MS.gene007061.t1 | MTR_1g104930 | 31.915 | 188 | 110 | 5 | 8 | 186 | 106 | 284 | 1.14e-23 | 97.1 |
| MS.gene007061.t1 | MTR_5g005900 | 28.821 | 229 | 154 | 5 | 3 | 224 | 102 | 328 | 3.40e-22 | 93.2 |
| MS.gene007061.t1 | MTR_4g086540 | 27.434 | 226 | 135 | 5 | 2 | 225 | 109 | 307 | 5.89e-22 | 92.0 |
| MS.gene007061.t1 | MTR_0007s0480 | 30.216 | 139 | 87 | 4 | 60 | 189 | 3 | 140 | 1.51e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007061.t1 | AT5G06570 | 60.444 | 225 | 85 | 3 | 1 | 222 | 102 | 325 | 5.92e-92 | 273 |
| MS.gene007061.t1 | AT5G06570 | 60.444 | 225 | 85 | 3 | 1 | 222 | 102 | 325 | 5.92e-92 | 273 |
| MS.gene007061.t1 | AT5G06570 | 60.444 | 225 | 85 | 3 | 1 | 222 | 117 | 340 | 6.07e-92 | 274 |
| MS.gene007061.t1 | AT5G06570 | 60.444 | 225 | 85 | 3 | 1 | 222 | 117 | 340 | 6.07e-92 | 274 |
| MS.gene007061.t1 | AT5G16080 | 38.073 | 218 | 127 | 3 | 2 | 216 | 119 | 331 | 1.76e-43 | 149 |
| MS.gene007061.t1 | AT5G62180 | 37.004 | 227 | 131 | 6 | 3 | 225 | 108 | 326 | 8.58e-37 | 131 |
| MS.gene007061.t1 | AT2G45610 | 40.541 | 185 | 107 | 3 | 3 | 186 | 107 | 289 | 8.77e-37 | 131 |
| MS.gene007061.t1 | AT3G63010 | 37.245 | 196 | 108 | 4 | 9 | 202 | 140 | 322 | 7.86e-34 | 124 |
| MS.gene007061.t1 | AT2G45600 | 35.443 | 237 | 131 | 8 | 3 | 227 | 94 | 320 | 1.83e-33 | 123 |
| MS.gene007061.t1 | AT5G27320 | 37.563 | 197 | 106 | 5 | 9 | 202 | 138 | 320 | 4.56e-33 | 122 |
| MS.gene007061.t1 | AT3G05120 | 35.644 | 202 | 115 | 5 | 3 | 202 | 134 | 322 | 4.16e-31 | 117 |
| MS.gene007061.t1 | AT5G23530 | 33.333 | 219 | 131 | 6 | 3 | 217 | 115 | 322 | 1.48e-30 | 115 |
| MS.gene007061.t1 | AT1G47480 | 28.821 | 229 | 135 | 6 | 8 | 227 | 105 | 314 | 2.20e-28 | 109 |
| MS.gene007061.t1 | AT1G68620 | 33.663 | 202 | 118 | 5 | 3 | 201 | 117 | 305 | 1.10e-26 | 105 |
| MS.gene007061.t1 | AT1G19190 | 29.694 | 229 | 147 | 6 | 2 | 226 | 99 | 317 | 8.35e-26 | 102 |
| MS.gene007061.t1 | AT5G14310 | 29.150 | 247 | 134 | 5 | 3 | 212 | 179 | 421 | 9.51e-25 | 101 |
| MS.gene007061.t1 | AT3G27320 | 30.705 | 241 | 123 | 7 | 3 | 205 | 162 | 396 | 3.12e-23 | 97.1 |
| MS.gene007061.t1 | AT3G27320 | 30.705 | 241 | 123 | 7 | 3 | 205 | 194 | 428 | 4.36e-23 | 97.1 |
| MS.gene007061.t1 | AT3G48700 | 28.054 | 221 | 149 | 5 | 9 | 222 | 108 | 325 | 2.42e-22 | 93.6 |
| MS.gene007061.t1 | AT3G48690 | 29.545 | 220 | 147 | 6 | 8 | 222 | 104 | 320 | 1.44e-20 | 88.6 |
| MS.gene007061.t1 | AT1G49640 | 30.045 | 223 | 134 | 9 | 8 | 223 | 107 | 314 | 1.69e-20 | 88.2 |
| MS.gene007061.t1 | AT1G49650 | 33.696 | 184 | 107 | 7 | 8 | 186 | 161 | 334 | 1.22e-19 | 86.7 |
| MS.gene007061.t1 | AT2G03550 | 27.753 | 227 | 147 | 7 | 2 | 222 | 95 | 310 | 1.95e-19 | 85.1 |
| MS.gene007061.t1 | AT1G49660 | 29.775 | 178 | 117 | 6 | 8 | 183 | 105 | 276 | 1.70e-16 | 77.4 |
Find 67 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGCATGAACTGTTTA+AGG | 0.092720 | 7.3:-6774859 | None:intergenic |
| AATGAAGCTTGATCCCATTT+TGG | 0.221227 | 7.3:+6774673 | MS.gene007061:CDS |
| ACATAACCTCTTATTCTTAC+AGG | 0.242199 | 7.3:-6772538 | None:intergenic |
| GCCACCAACTATCACCAAAA+TGG | 0.244462 | 7.3:-6774687 | None:intergenic |
| TTTATTATGGGCGACTCTTC+TGG | 0.255612 | 7.3:+6772457 | MS.gene007061:CDS |
| AGCTTCATTTGTTCAAGATT+TGG | 0.259469 | 7.3:-6774659 | None:intergenic |
| CTTTGACAGTGTGTTTATTA+TGG | 0.269266 | 7.3:+6772444 | MS.gene007061:CDS |
| TCAAGATTCAATGTTTGTTC+TGG | 0.294664 | 7.3:-6772616 | None:intergenic |
| TGGAGGACCTTCCTCAGATT+TGG | 0.297434 | 7.3:-6772596 | None:intergenic |
| CACCAGCTCGCGGTTCGGTT+TGG | 0.326565 | 7.3:+6772493 | MS.gene007061:CDS |
| CATCCATTGGCGAATCCATT+TGG | 0.361125 | 7.3:+6774626 | MS.gene007061:CDS |
| GGTGAGGTGGCTTCAAAGGC+AGG | 0.367234 | 7.3:+6772375 | MS.gene007061:CDS |
| TTTGACAGTGTGTTTATTAT+GGG | 0.375770 | 7.3:+6772445 | MS.gene007061:CDS |
| GCAATGAATTGCTTAAAGAT+AGG | 0.394694 | 7.3:+6774708 | MS.gene007061:CDS |
| TCACAATTGTTGTATGAGTC+TGG | 0.413242 | 7.3:+6772261 | None:intergenic |
| CAGGGGTTGAGCCATGGTTA+TGG | 0.420795 | 7.3:+6772394 | MS.gene007061:CDS |
| ATTGAACCTGTAAGAATAAG+AGG | 0.436336 | 7.3:+6772532 | MS.gene007061:CDS |
| CATTAAATACATTGAGTTTG+AGG | 0.440998 | 7.3:+6774772 | MS.gene007061:CDS |
| GCAACAAGGTTGAAAGGAAT+AGG | 0.450448 | 7.3:+6774743 | MS.gene007061:CDS |
| CCACCAACTATCACCAAAAT+GGG | 0.451123 | 7.3:-6774686 | None:intergenic |
| TTGCTCACCAGCTCGCGGTT+CGG | 0.462960 | 7.3:+6772488 | MS.gene007061:CDS |
| ATTAAATACATTGAGTTTGA+GGG | 0.463910 | 7.3:+6774773 | MS.gene007061:CDS |
| ATATTCAGAAACTGCAAAAG+AGG | 0.479398 | 7.3:+6774826 | MS.gene007061:CDS |
| TCTGGTGCAAGCCGGTAGTC+CGG | 0.481494 | 7.3:-6772313 | None:intergenic |
| TTTGGACTTCCATGTCCAAA+TGG | 0.481522 | 7.3:-6774641 | None:intergenic |
| GCTCGCGGTTCGGTTTGGAT+TGG | 0.481933 | 7.3:+6772498 | MS.gene007061:CDS |
| GCAGCTGGAAGACGGTGCTC+TGG | 0.503385 | 7.3:-6772331 | None:intergenic |
| AGATTCAATGTTTGTTCTGG+AGG | 0.507064 | 7.3:-6772613 | None:intergenic |
| TGATCTCTACTCTCTCCAAC+AGG | 0.510331 | 7.3:-6774605 | None:intergenic |
| AAGCGGTGAGGTGGCTTCAA+AGG | 0.511531 | 7.3:+6772371 | MS.gene007061:CDS |
| TGGTGGTTGCACCGGACTAC+CGG | 0.511979 | 7.3:+6772302 | MS.gene007061:CDS |
| TCAAGCACTGGTGGTTGCAC+CGG | 0.513886 | 7.3:+6772294 | MS.gene007061:CDS |
| GGCCGCTGGACTTCAAGCAC+TGG | 0.517291 | 7.3:+6772282 | MS.gene007061:CDS |
| GAGTTTGAGGGGTGTGAACA+TGG | 0.521959 | 7.3:+6774785 | MS.gene007061:CDS |
| GTGAGGTGGCTTCAAAGGCA+GGG | 0.524997 | 7.3:+6772376 | MS.gene007061:CDS |
| AACTATGCAACAAGGTTGAA+AGG | 0.532635 | 7.3:+6774737 | MS.gene007061:CDS |
| ACAGCATCATCAATTGCAGC+TGG | 0.532717 | 7.3:-6772346 | None:intergenic |
| CGCTGGACTTCAAGCACTGG+TGG | 0.534921 | 7.3:+6772285 | MS.gene007061:CDS |
| CAATGAATTGCTTAAAGATA+GGG | 0.536108 | 7.3:+6774709 | MS.gene007061:CDS |
| TGTTGTATGAGTCTGGCCGC+TGG | 0.537979 | 7.3:+6772268 | None:intergenic |
| GACGGTGCTCTGGTGCAAGC+CGG | 0.547439 | 7.3:-6772321 | None:intergenic |
| TGAATCTTGACTTACTAGAC+AGG | 0.555572 | 7.3:+6772629 | MS.gene007061:CDS |
| CAAAGGCAGGGGTTGAGCCA+TGG | 0.559944 | 7.3:+6772388 | MS.gene007061:CDS |
| ATCCAAACCGAACCGCGAGC+TGG | 0.561333 | 7.3:-6772495 | None:intergenic |
| TGTCCAAATGGATTCGCCAA+TGG | 0.564040 | 7.3:-6774629 | None:intergenic |
| TGAGGTGGCTTCAAAGGCAG+GGG | 0.564606 | 7.3:+6772377 | MS.gene007061:CDS |
| CATCAATTGCAGCTGGAAGA+CGG | 0.570423 | 7.3:-6772339 | None:intergenic |
| ATTATGGGCGACTCTTCTGG+CGG | 0.575291 | 7.3:+6772460 | MS.gene007061:CDS |
| AGTTTGAGGGGTGTGAACAT+GGG | 0.575990 | 7.3:+6774786 | MS.gene007061:CDS |
| TTATGGGCGACTCTTCTGGC+GGG | 0.583356 | 7.3:+6772461 | MS.gene007061:CDS |
| ACTGTCAAAGTCAACATCAC+TGG | 0.588550 | 7.3:-6772431 | None:intergenic |
| TTAAATACATTGAGTTTGAG+GGG | 0.597234 | 7.3:+6774774 | MS.gene007061:CDS |
| TCGGTTTGGATTGGATCGAA+CGG | 0.608973 | 7.3:+6772507 | MS.gene007061:CDS |
| TGGAGGTTGTCAATGCCTGT+TGG | 0.608993 | 7.3:+6774590 | MS.gene007061:CDS |
| CACCAGTGCTTGAAGTCCAG+CGG | 0.609175 | 7.3:-6772284 | None:intergenic |
| TTGGCGAATCCATTTGGACA+TGG | 0.609677 | 7.3:+6774632 | MS.gene007061:CDS |
| ATGCTGTCGAAGCGGTGAGG+TGG | 0.618657 | 7.3:+6772362 | MS.gene007061:CDS |
| AGAGAGTAGAGATCATCCAT+TGG | 0.627428 | 7.3:+6774613 | MS.gene007061:CDS |
| GCCATGGTTATGGAGAGCCA+TGG | 0.645828 | 7.3:+6772404 | MS.gene007061:CDS |
| GGAAGTACGGACCAAATCTG+AGG | 0.652219 | 7.3:+6772585 | MS.gene007061:CDS |
| GTACGGACCAAATCTGAGGA+AGG | 0.656456 | 7.3:+6772589 | MS.gene007061:CDS |
| GAATATTGCTCACCAGCTCG+CGG | 0.656723 | 7.3:+6772483 | MS.gene007061:CDS |
| TCAACATCACTGGTCAACCA+TGG | 0.667320 | 7.3:-6772421 | None:intergenic |
| ACCATGGCTCTCCATAACCA+TGG | 0.673171 | 7.3:-6772405 | None:intergenic |
| GGGCTGCAAACTATGCAACA+AGG | 0.691008 | 7.3:+6774729 | MS.gene007061:CDS |
| AATTGATGATGCTGTCGAAG+CGG | 0.713811 | 7.3:+6772354 | MS.gene007061:CDS |
| ATGATGCTGTCGAAGCGGTG+AGG | 0.739300 | 7.3:+6772359 | MS.gene007061:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATTATTATAAA+GGG | - | chr7.3:6774201-6774220 | None:intergenic | 0.0% |
| !! | TATTATTATTATTATTATAA+AGG | - | chr7.3:6774202-6774221 | None:intergenic | 0.0% |
| !! | AAAATATTATTATCTCTAAT+CGG | + | chr7.3:6773817-6773836 | MS.gene007061:intron | 10.0% |
| !! | AATAATATATTAAAATAGCA+AGG | + | chr7.3:6774103-6774122 | MS.gene007061:intron | 10.0% |
| !! | ATAATATATTAAAATAGCAA+GGG | + | chr7.3:6774104-6774123 | MS.gene007061:intron | 10.0% |
| !! | TATATATATATATATATCAG+AGG | - | chr7.3:6772975-6772994 | None:intergenic | 10.0% |
| !!! | AAATTAGAATCAATTATTTT+AGG | - | chr7.3:6772691-6772710 | None:intergenic | 10.0% |
| !!! | AATTAGAATCAATTATTTTA+GGG | - | chr7.3:6772690-6772709 | None:intergenic | 10.0% |
| !! | ACAATATTACAATACAAATT+TGG | + | chr7.3:6773484-6773503 | MS.gene007061:intron | 15.0% |
| !!! | ATATTTTGTTCTAAAATGTT+TGG | + | chr7.3:6772788-6772807 | MS.gene007061:intron | 15.0% |
| !!! | GATTAGAGATAATAATATTT+TGG | - | chr7.3:6773818-6773837 | None:intergenic | 15.0% |
| !!! | TAAAAGAATCATTCATTTTT+AGG | - | chr7.3:6772916-6772935 | None:intergenic | 15.0% |
| !!! | TTTTAATCTTTAACAACTTA+TGG | + | chr7.3:6773927-6773946 | MS.gene007061:intron | 15.0% |
| !! | AAGTTGTTAAAGATTAAAAG+AGG | - | chr7.3:6773926-6773945 | None:intergenic | 20.0% |
| !! | AGTTGTTAAAGATTAAAAGA+GGG | - | chr7.3:6773925-6773944 | None:intergenic | 20.0% |
| !! | ATTAAATACATTGAGTTTGA+GGG | + | chr7.3:6774773-6774792 | MS.gene007061:CDS | 20.0% |
| !! | TATCTTTCACTTTGTATTTA+TGG | + | chr7.3:6773059-6773078 | MS.gene007061:intron | 20.0% |
| !! | TGTAAAATAGTCAAATGAAT+TGG | + | chr7.3:6773173-6773192 | MS.gene007061:intron | 20.0% |
| !! | TTAGCACATATATGTAAAAT+TGG | - | chr7.3:6774529-6774548 | None:intergenic | 20.0% |
| !!! | AATTTTGCACTTTTTTTTAG+AGG | + | chr7.3:6773127-6773146 | MS.gene007061:intron | 20.0% |
| !!! | ATTTCCAATTTTTCAGATTT+TGG | + | chr7.3:6774570-6774589 | MS.gene007061:intron | 20.0% |
| !!! | TTCATTATTTTCAAAGAAGT+TGG | - | chr7.3:6773323-6773342 | None:intergenic | 20.0% |
| ! | AAGATTGAAAATCTTTACAC+TGG | - | chr7.3:6774159-6774178 | None:intergenic | 25.0% |
| ! | ACACAAAGTCAACTAAATAT+TGG | - | chr7.3:6773670-6773689 | None:intergenic | 25.0% |
| ! | ACGACATTCTTTATTATACT+TGG | - | chr7.3:6773522-6773541 | None:intergenic | 25.0% |
| ! | ACTTGTGGTTCATTAAATTA+TGG | + | chr7.3:6773976-6773995 | MS.gene007061:intron | 25.0% |
| ! | AGAGCTTGAATTTGATATAT+AGG | - | chr7.3:6772844-6772863 | None:intergenic | 25.0% |
| ! | AGTTCAACGAAGAAATAATT+TGG | - | chr7.3:6772867-6772886 | None:intergenic | 25.0% |
| ! | ATTGCTTTCAAACTAATAGT+AGG | + | chr7.3:6774047-6774066 | MS.gene007061:intron | 25.0% |
| ! | CAATGAATTGCTTAAAGATA+GGG | + | chr7.3:6774709-6774728 | MS.gene007061:CDS | 25.0% |
| ! | CAGAATTTCTCATCTAATTT+CGG | + | chr7.3:6772742-6772761 | MS.gene007061:intron | 25.0% |
| ! | CATTAAATACATTGAGTTTG+AGG | + | chr7.3:6774772-6774791 | MS.gene007061:CDS | 25.0% |
| ! | TACAAGTAATATTTACCACA+TGG | - | chr7.3:6774076-6774095 | None:intergenic | 25.0% |
| ! | TGTCATGGAAATTGAATATT+TGG | - | chr7.3:6773604-6773623 | None:intergenic | 25.0% |
| ! | TTAAATACATTGAGTTTGAG+GGG | + | chr7.3:6774774-6774793 | MS.gene007061:CDS | 25.0% |
| ! | TTATAAAGGGTTCTATGATT+TGG | - | chr7.3:6774188-6774207 | None:intergenic | 25.0% |
| ! | TTCAATTTCCATGACATATT+AGG | + | chr7.3:6773608-6773627 | MS.gene007061:intron | 25.0% |
| ! | TTTGACAGTGTGTTTATTAT+GGG | + | chr7.3:6772445-6772464 | MS.gene007061:CDS | 25.0% |
| !! | AATAAGAGGTTATGTTTTGT+TGG | + | chr7.3:6772546-6772565 | MS.gene007061:CDS | 25.0% |
| !! | CTTTGAAAATAATGAAGCAT+TGG | + | chr7.3:6773327-6773346 | MS.gene007061:intron | 25.0% |
| !! | GATGGTTCTTATTTAAAGTT+AGG | + | chr7.3:6773855-6773874 | MS.gene007061:intron | 25.0% |
| !! | TACTATTAGTTTGAAAGCAA+TGG | - | chr7.3:6774048-6774067 | None:intergenic | 25.0% |
| !! | TATTTTCACCTAATATGTCA+TGG | - | chr7.3:6773619-6773638 | None:intergenic | 25.0% |
| !!! | CTTGCTAACAAGTTTTTTTA+AGG | - | chr7.3:6773793-6773812 | None:intergenic | 25.0% |
| !!! | TCATCAACTTTTTCCAATAT+AGG | + | chr7.3:6774019-6774038 | MS.gene007061:intron | 25.0% |
| AAAGCAATGGAAACCTATAT+TGG | - | chr7.3:6774035-6774054 | None:intergenic | 30.0% | |
| ACATAACCTCTTATTCTTAC+AGG | - | chr7.3:6772541-6772560 | None:intergenic | 30.0% | |
| ACCTCCAAAATCTGAAAAAT+TGG | - | chr7.3:6774577-6774596 | None:intergenic | 30.0% | |
| AGAGCCACATTATAATATTG+TGG | - | chr7.3:6773235-6773254 | None:intergenic | 30.0% | |
| AGCTTCATTTGTTCAAGATT+TGG | - | chr7.3:6774662-6774681 | None:intergenic | 30.0% | |
| ATATTCAGAAACTGCAAAAG+AGG | + | chr7.3:6774826-6774845 | MS.gene007061:CDS | 30.0% | |
| ATTGAACCTGTAAGAATAAG+AGG | + | chr7.3:6772532-6772551 | MS.gene007061:CDS | 30.0% | |
| CAAAACTAAAACAAGTGAAG+TGG | - | chr7.3:6773423-6773442 | None:intergenic | 30.0% | |
| CTTTGACAGTGTGTTTATTA+TGG | + | chr7.3:6772444-6772463 | MS.gene007061:CDS | 30.0% | |
| GAGCCACATTATAATATTGT+GGG | - | chr7.3:6773234-6773253 | None:intergenic | 30.0% | |
| GCAATGAATTGCTTAAAGAT+AGG | + | chr7.3:6774708-6774727 | MS.gene007061:CDS | 30.0% | |
| TCAAGATTCAATGTTTGTTC+TGG | - | chr7.3:6772619-6772638 | None:intergenic | 30.0% | |
| TCTCTAATCGGACAATATTA+TGG | + | chr7.3:6773829-6773848 | MS.gene007061:intron | 30.0% | |
| ! | TTTGAAGCATGAACTGTTTA+AGG | - | chr7.3:6774862-6774881 | None:intergenic | 30.0% |
| !! | TCCAATTTTTCAGATTTTGG+AGG | + | chr7.3:6774573-6774592 | MS.gene007061:intron | 30.0% |
| !!! | CACTTCACTTGTTTTAGTTT+TGG | + | chr7.3:6773421-6773440 | MS.gene007061:intron | 30.0% |
| !!! | GTACGTGTAGCATTTTTTTT+AGG | - | chr7.3:6774134-6774153 | None:intergenic | 30.0% |
| !!! | TTTTAGTTTTGGCCTTATCT+GGG | + | chr7.3:6773432-6773451 | MS.gene007061:intron | 30.0% |
| AACTATGCAACAAGGTTGAA+AGG | + | chr7.3:6774737-6774756 | MS.gene007061:CDS | 35.0% | |
| AATACTTACCTCGTTCATTC+TGG | + | chr7.3:6772996-6773015 | MS.gene007061:intron | 35.0% | |
| ACTAATAGTAGGTTTCCATG+TGG | + | chr7.3:6774058-6774077 | MS.gene007061:intron | 35.0% | |
| AGATTCAATGTTTGTTCTGG+AGG | - | chr7.3:6772616-6772635 | None:intergenic | 35.0% | |
| AGTGAAGTGGTTGTGTTTAT+TGG | - | chr7.3:6773410-6773429 | None:intergenic | 35.0% | |
| CATGGACGTAGGTAATTAAA+TGG | + | chr7.3:6773381-6773400 | MS.gene007061:intron | 35.0% | |
| CATTGGTATCCAAAGTTATC+TGG | + | chr7.3:6773344-6773363 | MS.gene007061:intron | 35.0% | |
| CATTTAATTACCTACGTCCA+TGG | - | chr7.3:6773383-6773402 | None:intergenic | 35.0% | |
| CCACATTATAATATTGTGGG+TGG | - | chr7.3:6773231-6773250 | None:intergenic | 35.0% | |
| CCACCCACAATATTATAATG+TGG | + | chr7.3:6773228-6773247 | MS.gene007061:intron | 35.0% | |
| CGGACAATATTATGGAATGA+TGG | + | chr7.3:6773837-6773856 | MS.gene007061:intron | 35.0% | |
| CGGTAGAATCATGAATTGAA+TGG | + | chr7.3:6772762-6772781 | MS.gene007061:intron | 35.0% | |
| GTGAAGTGGTTGTGTTTATT+GGG | - | chr7.3:6773409-6773428 | None:intergenic | 35.0% | |
| TGAAGTGGTTGTGTTTATTG+GGG | - | chr7.3:6773408-6773427 | None:intergenic | 35.0% | |
| TGAATCTTGACTTACTAGAC+AGG | + | chr7.3:6772629-6772648 | MS.gene007061:CDS | 35.0% | |
| ! | AATGAAGCTTGATCCCATTT+TGG | + | chr7.3:6774673-6774692 | MS.gene007061:CDS | 35.0% |
| !!! | GTTTTAGTTTTGGCCTTATC+TGG | + | chr7.3:6773431-6773450 | MS.gene007061:intron | 35.0% |
| !!! | TGTGGCTCTTTTTTTACAGT+AGG | + | chr7.3:6773246-6773265 | MS.gene007061:intron | 35.0% |
| ACTGTCAAAGTCAACATCAC+TGG | - | chr7.3:6772434-6772453 | None:intergenic | 40.0% | |
| AGAGAGTAGAGATCATCCAT+TGG | + | chr7.3:6774613-6774632 | MS.gene007061:CDS | 40.0% | |
| CCACCAACTATCACCAAAAT+GGG | - | chr7.3:6774689-6774708 | None:intergenic | 40.0% | |
| GCAACAAGGTTGAAAGGAAT+AGG | + | chr7.3:6774743-6774762 | MS.gene007061:CDS | 40.0% | |
| TATCCAAAGTTATCTGGCCA+AGG | + | chr7.3:6773350-6773369 | MS.gene007061:intron | 40.0% | |
| TGAACAAACCAGAATGAACG+AGG | - | chr7.3:6773007-6773026 | None:intergenic | 40.0% | |
| TTGTGGGTGGAAATTGTGAA+CGG | - | chr7.3:6773218-6773237 | None:intergenic | 40.0% | |
| TTTATTATGGGCGACTCTTC+TGG | + | chr7.3:6772457-6772476 | MS.gene007061:CDS | 40.0% | |
| TTTGGACTTCCATGTCCAAA+TGG | - | chr7.3:6774644-6774663 | None:intergenic | 40.0% | |
| !! | AATTGATGATGCTGTCGAAG+CGG | + | chr7.3:6772354-6772373 | MS.gene007061:CDS | 40.0% |
| !! | GATCCCATTTTGGTGATAGT+TGG | + | chr7.3:6774683-6774702 | MS.gene007061:CDS | 40.0% |
| ACAGCATCATCAATTGCAGC+TGG | - | chr7.3:6772349-6772368 | None:intergenic | 45.0% | |
| CATCAATTGCAGCTGGAAGA+CGG | - | chr7.3:6772342-6772361 | None:intergenic | 45.0% | |
| CATCCATTGGCGAATCCATT+TGG | + | chr7.3:6774626-6774645 | MS.gene007061:CDS | 45.0% | |
| CTTGACTTACTAGACAGGTG+AGG | + | chr7.3:6772634-6772653 | MS.gene007061:intron | 45.0% | |
| GCCACCAACTATCACCAAAA+TGG | - | chr7.3:6774690-6774709 | None:intergenic | 45.0% | |
| GCGACATCATGAGAAACTTG+TGG | + | chr7.3:6773961-6773980 | MS.gene007061:intron | 45.0% | |
| TCAACATCACTGGTCAACCA+TGG | - | chr7.3:6772424-6772443 | None:intergenic | 45.0% | |
| TGATCTCTACTCTCTCCAAC+AGG | - | chr7.3:6774608-6774627 | None:intergenic | 45.0% | |
| TTACCTACGTCCATGGCTAT+TGG | - | chr7.3:6773376-6773395 | None:intergenic | 45.0% | |
| TTGGCGAATCCATTTGGACA+TGG | + | chr7.3:6774632-6774651 | MS.gene007061:CDS | 45.0% | |
| ! | AGTTTGAGGGGTGTGAACAT+GGG | + | chr7.3:6774786-6774805 | MS.gene007061:CDS | 45.0% |
| ! | TGTCCAAATGGATTCGCCAA+TGG | - | chr7.3:6774632-6774651 | None:intergenic | 45.0% |
| !! | CCCATTTTGGTGATAGTTGG+TGG | + | chr7.3:6774686-6774705 | MS.gene007061:CDS | 45.0% |
| !! | TCGGTTTGGATTGGATCGAA+CGG | + | chr7.3:6772507-6772526 | MS.gene007061:CDS | 45.0% |
| !!! | GTTTTGTTGGCGCCGTTTTT+TGG | + | chr7.3:6772559-6772578 | MS.gene007061:CDS | 45.0% |
| ACCATGGCTCTCCATAACCA+TGG | - | chr7.3:6772408-6772427 | None:intergenic | 50.0% | |
| ATTATGGGCGACTCTTCTGG+CGG | + | chr7.3:6772460-6772479 | MS.gene007061:CDS | 50.0% | |
| CGTACTTCCCCGCCAAAAAA+CGG | - | chr7.3:6772574-6772593 | None:intergenic | 50.0% | |
| GAATATTGCTCACCAGCTCG+CGG | + | chr7.3:6772483-6772502 | MS.gene007061:CDS | 50.0% | |
| GGGCTGCAAACTATGCAACA+AGG | + | chr7.3:6774729-6774748 | MS.gene007061:CDS | 50.0% | |
| GTACGGACCAAATCTGAGGA+AGG | + | chr7.3:6772589-6772608 | MS.gene007061:CDS | 50.0% | |
| GTTTCTCATGATGTCGCGTG+TGG | - | chr7.3:6773958-6773977 | None:intergenic | 50.0% | |
| TGGAGGACCTTCCTCAGATT+TGG | - | chr7.3:6772599-6772618 | None:intergenic | 50.0% | |
| TGGAGGTTGTCAATGCCTGT+TGG | + | chr7.3:6774590-6774609 | MS.gene007061:CDS | 50.0% | |
| ! | GAGTTTGAGGGGTGTGAACA+TGG | + | chr7.3:6774785-6774804 | MS.gene007061:CDS | 50.0% |
| ! | GGAAGTACGGACCAAATCTG+AGG | + | chr7.3:6772585-6772604 | MS.gene007061:CDS | 50.0% |
| ! | TGGCCTTGGCCAGATAACTT+TGG | - | chr7.3:6773356-6773375 | None:intergenic | 50.0% |
| !!! | CGTTTTTTGGCGGGGAAGTA+CGG | + | chr7.3:6772572-6772591 | MS.gene007061:CDS | 50.0% |
| !!! | TTGTTGGCGCCGTTTTTTGG+CGG | + | chr7.3:6772562-6772581 | MS.gene007061:CDS | 50.0% |
| AAGCGGTGAGGTGGCTTCAA+AGG | + | chr7.3:6772371-6772390 | MS.gene007061:CDS | 55.0% | |
| AGGCCAATAGCCATGGACGT+AGG | + | chr7.3:6773370-6773389 | MS.gene007061:intron | 55.0% | |
| ATGATGCTGTCGAAGCGGTG+AGG | + | chr7.3:6772359-6772378 | MS.gene007061:CDS | 55.0% | |
| CACCAGTGCTTGAAGTCCAG+CGG | - | chr7.3:6772287-6772306 | None:intergenic | 55.0% | |
| CAGGGGTTGAGCCATGGTTA+TGG | + | chr7.3:6772394-6772413 | MS.gene007061:CDS | 55.0% | |
| GCACGTCACTCTCCCAGATA+AGG | - | chr7.3:6773447-6773466 | None:intergenic | 55.0% | |
| GCCATGGTTATGGAGAGCCA+TGG | + | chr7.3:6772404-6772423 | MS.gene007061:CDS | 55.0% | |
| GTGAGGTGGCTTCAAAGGCA+GGG | + | chr7.3:6772376-6772395 | MS.gene007061:CDS | 55.0% | |
| TCTCATGATGTCGCGTGTGG+TGG | - | chr7.3:6773955-6773974 | None:intergenic | 55.0% | |
| TGAGGTGGCTTCAAAGGCAG+GGG | + | chr7.3:6772377-6772396 | MS.gene007061:CDS | 55.0% | |
| TTATGGGCGACTCTTCTGGC+GGG | + | chr7.3:6772461-6772480 | MS.gene007061:CDS | 55.0% | |
| ! | ACGTCCATGGCTATTGGCCT+TGG | - | chr7.3:6773370-6773389 | None:intergenic | 55.0% |
| !! | TCAAGCACTGGTGGTTGCAC+CGG | + | chr7.3:6772294-6772313 | MS.gene007061:CDS | 55.0% |
| !!! | TGTTGGCGCCGTTTTTTGGC+GGG | + | chr7.3:6772563-6772582 | MS.gene007061:CDS | 55.0% |
| ATCCAAACCGAACCGCGAGC+TGG | - | chr7.3:6772498-6772517 | None:intergenic | 60.0% | |
| ATGCTGTCGAAGCGGTGAGG+TGG | + | chr7.3:6772362-6772381 | MS.gene007061:CDS | 60.0% | |
| CAAAGGCAGGGGTTGAGCCA+TGG | + | chr7.3:6772388-6772407 | MS.gene007061:CDS | 60.0% | |
| CTGGCCAAGGCCAATAGCCA+TGG | + | chr7.3:6773363-6773382 | MS.gene007061:intron | 60.0% | |
| GGTGAGGTGGCTTCAAAGGC+AGG | + | chr7.3:6772375-6772394 | MS.gene007061:CDS | 60.0% | |
| TCTGGTGCAAGCCGGTAGTC+CGG | - | chr7.3:6772316-6772335 | None:intergenic | 60.0% | |
| TGGTGGTTGCACCGGACTAC+CGG | + | chr7.3:6772302-6772321 | MS.gene007061:CDS | 60.0% | |
| TTGCTCACCAGCTCGCGGTT+CGG | + | chr7.3:6772488-6772507 | MS.gene007061:CDS | 60.0% | |
| !! | CGCTGGACTTCAAGCACTGG+TGG | + | chr7.3:6772285-6772304 | MS.gene007061:CDS | 60.0% |
| !! | GCTCGCGGTTCGGTTTGGAT+TGG | + | chr7.3:6772498-6772517 | MS.gene007061:CDS | 60.0% |
| !!! | GTTGGCGCCGTTTTTTGGCG+GGG | + | chr7.3:6772564-6772583 | MS.gene007061:CDS | 60.0% |
| GACGGTGCTCTGGTGCAAGC+CGG | - | chr7.3:6772324-6772343 | None:intergenic | 65.0% | |
| GCAGCTGGAAGACGGTGCTC+TGG | - | chr7.3:6772334-6772353 | None:intergenic | 65.0% | |
| GGCCGCTGGACTTCAAGCAC+TGG | + | chr7.3:6772282-6772301 | MS.gene007061:CDS | 65.0% | |
| !! | CACCAGCTCGCGGTTCGGTT+TGG | + | chr7.3:6772493-6772512 | MS.gene007061:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6772274 | 6774892 | 6772274 | ID=MS.gene007061 |
| chr7.3 | mRNA | 6772274 | 6774892 | 6772274 | ID=MS.gene007061.t1;Parent=MS.gene007061 |
| chr7.3 | exon | 6772274 | 6772650 | 6772274 | ID=MS.gene007061.t1.exon1;Parent=MS.gene007061.t1 |
| chr7.3 | CDS | 6772274 | 6772650 | 6772274 | ID=cds.MS.gene007061.t1;Parent=MS.gene007061.t1 |
| chr7.3 | exon | 6774586 | 6774892 | 6774586 | ID=MS.gene007061.t1.exon2;Parent=MS.gene007061.t1 |
| chr7.3 | CDS | 6774586 | 6774892 | 6774586 | ID=cds.MS.gene007061.t1;Parent=MS.gene007061.t1 |
| Gene Sequence |
| Protein sequence |
