AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019397

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019397.t1 MTR_8g035520 95.745 329 14 0 1 329 1 329 0.0 637
MS.gene019397.t1 MTR_8g035540 77.044 318 69 1 13 326 1 318 3.81e-180 501
MS.gene019397.t1 MTR_6g464510 50.456 329 149 6 3 325 7 327 2.94e-110 324
MS.gene019397.t1 MTR_6g464280 51.090 321 141 5 14 325 12 325 7.40e-106 312
MS.gene019397.t1 MTR_6g464320 47.546 326 155 5 12 328 11 329 1.03e-97 292
MS.gene019397.t1 MTR_0007s0520 47.289 332 154 6 3 326 8 326 1.83e-96 289
MS.gene019397.t1 MTR_1g102160 45.988 324 158 7 13 326 11 327 1.63e-92 278
MS.gene019397.t1 MTR_1g102170 46.250 320 151 6 10 320 27 334 1.86e-91 276
MS.gene019397.t1 MTR_6g464120 47.386 306 153 4 14 316 17 317 1.29e-90 280
MS.gene019397.t1 MTR_8g035500 42.453 318 177 4 11 324 2 317 1.18e-89 271
MS.gene019397.t1 MTR_1g111280 37.294 303 176 6 21 316 34 329 1.90e-56 187
MS.gene019397.t1 MTR_7g406880 34.877 324 190 7 21 325 29 350 5.54e-52 175
MS.gene019397.t1 MTR_6g065120 35.333 300 171 7 40 327 50 338 6.95e-50 169
MS.gene019397.t1 MTR_6g065430 35.640 289 171 5 40 324 50 327 5.66e-49 167
MS.gene019397.t1 MTR_7g107040 34.395 314 194 7 21 329 15 321 7.59e-49 166
MS.gene019397.t1 MTR_6g065370 34.114 299 175 7 40 327 49 336 2.36e-48 166
MS.gene019397.t1 MTR_0007s0480 50.000 172 77 3 164 327 3 173 2.27e-47 157
MS.gene019397.t1 MTR_6g065270 34.641 306 168 8 40 327 47 338 2.89e-47 162
MS.gene019397.t1 MTR_6g065110 33.220 295 177 6 42 326 52 336 3.00e-47 162
MS.gene019397.t1 MTR_6g065400 33.445 299 177 7 40 327 49 336 1.57e-46 160
MS.gene019397.t1 MTR_1g012430 35.507 276 162 9 17 290 9 270 2.98e-45 156
MS.gene019397.t1 MTR_4g050140 33.770 305 193 6 26 326 18 317 3.68e-45 156
MS.gene019397.t1 MTR_4g086510 34.921 315 183 9 21 325 16 318 1.26e-44 155
MS.gene019397.t1 MTR_7g056207 34.076 314 187 8 21 325 48 350 1.20e-43 154
MS.gene019397.t1 MTR_3g101420 32.907 313 192 9 21 326 15 316 1.40e-43 152
MS.gene019397.t1 MTR_4g086540 32.237 304 170 8 26 325 31 302 3.26e-41 146
MS.gene019397.t1 MTR_1g082210 30.650 323 186 8 25 326 37 342 1.37e-39 142
MS.gene019397.t1 MTR_4g086480 31.731 312 196 8 21 326 20 320 3.23e-39 141
MS.gene019397.t1 MTR_6g065340 32.441 299 164 9 40 327 60 331 1.08e-37 137
MS.gene019397.t1 MTR_5g005920 31.065 338 211 12 1 322 1 332 1.58e-37 137
MS.gene019397.t1 MTR_1g089310 34.043 235 134 5 72 301 98 316 1.88e-34 129
MS.gene019397.t1 MTR_1g089310 34.043 235 134 5 72 301 114 332 1.91e-34 129
MS.gene019397.t1 MTR_4g086470 33.788 293 177 10 38 324 36 317 1.35e-33 126
MS.gene019397.t1 MTR_3g012440 31.752 274 171 6 64 326 74 342 1.84e-33 126
MS.gene019397.t1 MTR_7g093950 29.032 310 183 8 38 325 53 347 3.37e-33 125
MS.gene019397.t1 MTR_3g450680 32.399 321 187 11 21 324 24 331 4.21e-31 120
MS.gene019397.t1 MTR_5g005850 35.714 224 126 7 1 213 1 217 3.53e-30 117
MS.gene019397.t1 MTR_1g105020 30.032 313 203 9 21 325 16 320 2.65e-29 114
MS.gene019397.t1 MTR_5g005900 29.796 245 151 8 4 238 3 236 2.86e-28 112
MS.gene019397.t1 MTR_8g040860 30.408 319 198 11 21 328 24 329 1.12e-27 110
MS.gene019397.t1 MTR_1g104930 40.642 187 102 5 21 204 20 200 8.62e-27 108
MS.gene019397.t1 MTR_6g022710 29.167 288 160 8 78 325 159 442 2.06e-25 106
MS.gene019397.t1 MTR_7g051020 33.962 318 184 14 21 324 20 325 7.09e-25 102
MS.gene019397.t1 MTR_1g104933 40.764 157 87 3 50 204 46 198 1.30e-21 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019397.t1 AT2G45600 54.062 320 135 4 14 329 9 320 9.22e-121 350
MS.gene019397.t1 AT2G45610 46.809 329 166 4 1 325 1 324 1.18e-102 304
MS.gene019397.t1 AT5G62180 44.379 338 165 9 1 327 1 326 3.01e-87 265
MS.gene019397.t1 AT1G68620 38.971 272 154 7 13 282 24 285 1.51e-52 176
MS.gene019397.t1 AT5G16080 37.201 293 173 5 21 309 36 321 5.77e-52 175
MS.gene019397.t1 AT5G06570 36.395 294 172 8 21 304 33 321 7.83e-40 143
MS.gene019397.t1 AT5G06570 36.395 294 172 8 21 304 33 321 7.83e-40 143
MS.gene019397.t1 AT5G06570 36.395 294 172 8 21 304 18 306 7.96e-40 143
MS.gene019397.t1 AT5G06570 36.395 294 172 8 21 304 18 306 7.96e-40 143
MS.gene019397.t1 AT5G23530 30.769 312 185 10 25 324 34 326 1.11e-37 137
MS.gene019397.t1 AT1G47480 31.949 313 189 9 23 328 18 313 1.61e-37 136
MS.gene019397.t1 AT3G63010 30.699 329 183 10 25 328 37 345 6.99e-37 135
MS.gene019397.t1 AT5G27320 30.897 301 169 8 25 303 37 320 1.14e-35 132
MS.gene019397.t1 AT3G48690 33.482 224 141 4 21 240 13 232 4.52e-35 130
MS.gene019397.t1 AT1G49640 35.789 190 113 3 21 208 14 196 5.91e-34 127
MS.gene019397.t1 AT3G48700 34.222 225 130 5 27 240 19 236 2.24e-33 125
MS.gene019397.t1 AT3G05120 30.584 291 174 7 25 299 37 315 1.09e-31 121
MS.gene019397.t1 AT1G49660 35.233 193 122 3 17 207 8 199 4.45e-30 117
MS.gene019397.t1 AT1G49650 34.225 187 120 3 21 206 69 253 5.76e-30 117
MS.gene019397.t1 AT1G19190 33.871 186 119 3 22 204 14 198 8.96e-30 116
MS.gene019397.t1 AT2G03550 36.066 183 113 2 22 204 14 192 3.17e-29 114
MS.gene019397.t1 AT5G14310 30.479 292 156 8 78 325 150 438 5.44e-27 110
MS.gene019397.t1 AT3G27320 27.564 312 142 7 20 250 31 339 3.28e-24 102
MS.gene019397.t1 AT3G27320 31.401 207 108 3 78 250 165 371 6.44e-24 102

Find 109 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCTACAACAATCGGTATT+TGG 0.173341 8.2:-63792917 None:intergenic
AAAGGAGCTAGTGAAGATTT+TGG 0.262688 8.2:+63793427 MS.gene019397:CDS
TATATCACATCCGAAACTTT+TGG 0.276208 8.2:-63793332 None:intergenic
CTGCCGAGGTGCTTTGTTAA+TGG 0.290098 8.2:+63793374 MS.gene019397:CDS
GAAGAAGGCGGTGGATGGTT+TGG 0.298827 8.2:-63792792 None:intergenic
TTTAGATAAAACAGATTGAT+TGG 0.326117 8.2:-63792721 None:intergenic
CTTGATTTCGAGGAATTCAT+AGG 0.332300 8.2:-63792634 None:intergenic
CATAAGATCACTTGCTGATA+AGG 0.336937 8.2:-63793258 None:intergenic
AAGAAGGCGGTGGATGGTTT+GGG 0.338643 8.2:-63792791 None:intergenic
GGCTACAACAATCGGTATTT+GGG 0.352791 8.2:-63792916 None:intergenic
AGGTGTTTGTGGCTGTGTTT+AGG 0.375709 8.2:-63792752 None:intergenic
TCGGAGGATGGTGGCACGGT+GGG 0.395070 8.2:-63792696 None:intergenic
CTTTGATAACTGCTTCTTGA+TGG 0.402538 8.2:+63793073 MS.gene019397:CDS
AAGCATTAATTGAGTACGTT+AGG 0.420290 8.2:+63793531 MS.gene019397:CDS
ATAAGCCCTTGGATCTTAAG+AGG 0.421207 8.2:-63793161 None:intergenic
GGGAGCTTAGCTGCGGAAGA+AGG 0.436075 8.2:-63792807 None:intergenic
GTATTGTAATCCAAAAGTTT+CGG 0.440947 8.2:+63793322 MS.gene019397:CDS
GGAAGGAGATGGAGGAAGGA+TGG 0.441614 8.2:-63792869 None:intergenic
ATTAATGCTTGTGCCTTAGC+AGG 0.443498 8.2:-63793518 None:intergenic
TGGCTACGGTGGGGATCCCT+TGG 0.444444 8.2:+63793394 MS.gene019397:CDS
CAGGGTTGAGCTTGATTTCG+AGG 0.446420 8.2:-63792644 None:intergenic
AAAGTTTCGGATGTGATATA+CGG 0.451670 8.2:+63793335 MS.gene019397:CDS
ATCGGAGGATGGTGGCACGG+TGG 0.453890 8.2:-63792697 None:intergenic
TTAGATAAAACAGATTGATT+GGG 0.457998 8.2:-63792720 None:intergenic
ATTCTCTACTTCCATGGTGG+TGG 0.458108 8.2:+63792834 MS.gene019397:CDS
CGTTAGGAAATTTATTTCCT+CGG 0.460385 8.2:+63793547 MS.gene019397:CDS
TTTCTTGTGAGGGAACCGTC+AGG 0.462902 8.2:-63792663 None:intergenic
TATCAGCAAGTGATCTTATG+TGG 0.466303 8.2:+63793261 MS.gene019397:CDS
ATAAGATCACTTGCTGATAA+GGG 0.469063 8.2:-63793257 None:intergenic
CTACGGTGGGGATCCCTTGG+TGG 0.471238 8.2:+63793397 MS.gene019397:CDS
CCTCTCATTCTCTACTTCCA+TGG 0.472077 8.2:+63792828 MS.gene019397:CDS
GTGGGGATCCCTTGGTGGAT+AGG 0.478308 8.2:+63793402 MS.gene019397:CDS
GTGCATTCATTATAAGCCCT+TGG 0.487507 8.2:-63793172 None:intergenic
GCAGCAGGGAGACGGTGCTC+TGG 0.489342 8.2:-63792960 None:intergenic
CGGAGGATGGTGGCACGGTG+GGG 0.494269 8.2:-63792695 None:intergenic
GACGTTGTCGTTTCTTGTGA+GGG 0.494899 8.2:-63792673 None:intergenic
AGGTGCTTTGTTAATGGCTA+CGG 0.498754 8.2:+63793380 MS.gene019397:CDS
GTGATATACGGTGAGAAGAT+CGG 0.499961 8.2:+63793347 MS.gene019397:CDS
CGGTATTTGGGCGGCGAAGG+TGG 0.500026 8.2:-63792904 None:intergenic
TTTGCCTGAGGGCAAAGATC+GGG 0.502336 8.2:+63793292 MS.gene019397:CDS
ACAGCGTCATCATAGGCAGC+AGG 0.503505 8.2:-63792975 None:intergenic
AATCGGTATTTGGGCGGCGA+AGG 0.504867 8.2:-63792907 None:intergenic
CTCTCTCCTCTTAAGATCCA+AGG 0.508284 8.2:+63793155 MS.gene019397:CDS
TTCTTGATGGGAAGTAGTGC+AGG 0.508384 8.2:+63793086 MS.gene019397:CDS
GATGCGAATGGAGGTGTTTG+TGG 0.509539 8.2:-63792763 None:intergenic
TGAGGATGGGTTTCATGCTG+TGG 0.514157 8.2:+63793484 MS.gene019397:CDS
TCCCTTGGTGGATAGGCAAA+AGG 0.515897 8.2:+63793409 MS.gene019397:CDS
TGGTGGAAGGAGATGGAGGA+AGG 0.515934 8.2:-63792873 None:intergenic
TCAACTGAGGCTACAACAAT+CGG 0.516064 8.2:-63792924 None:intergenic
GAAGCTCGGATTCTGTCCTC+TGG 0.518185 8.2:-63793211 None:intergenic
ATCCAAGTGTCTCTGATCCA+TGG 0.519484 8.2:+63793033 MS.gene019397:CDS
TGAATCAACAGCGTCATCAT+AGG 0.525186 8.2:-63792982 None:intergenic
TTTGATAACTGCTTCTTGAT+GGG 0.528311 8.2:+63793074 MS.gene019397:CDS
TGCTTTGTTAATGGCTACGG+TGG 0.528480 8.2:+63793383 MS.gene019397:CDS
TGATCCCGATCTTTGCCCTC+AGG 0.528666 8.2:-63793296 None:intergenic
CTTTGCCTGAGGGCAAAGAT+CGG 0.530032 8.2:+63793291 MS.gene019397:CDS
AGATGGAGGAAGGATGGTAG+CGG 0.533188 8.2:-63792863 None:intergenic
ACAACATTGGTGGAAGGAGA+TGG 0.537016 8.2:-63792880 None:intergenic
TCCACGTTGTCTCTAATCCA+TGG 0.538847 8.2:-63793050 None:intergenic
GCTTTGTTAATGGCTACGGT+GGG 0.539699 8.2:+63793384 MS.gene019397:CDS
CATCATAGGCAGCAGGGAGA+CGG 0.539880 8.2:-63792968 None:intergenic
CTGCGGAAGAAGGCGGTGGA+TGG 0.542195 8.2:-63792797 None:intergenic
CCATGGAAGTAGAGAATGAG+AGG 0.543683 8.2:-63792828 None:intergenic
GGACGTTGTCGTTTCTTGTG+AGG 0.544412 8.2:-63792674 None:intergenic
ACGCTGTTGATTCACTGCTC+TGG 0.544781 8.2:+63792991 MS.gene019397:CDS
CGGCGAAGGTGGAACAACAT+TGG 0.547001 8.2:-63792893 None:intergenic
TTCTTGTGAGGGAACCGTCA+GGG 0.551838 8.2:-63792662 None:intergenic
TAAAACAGATTGATTGGGAT+CGG 0.554043 8.2:-63792715 None:intergenic
TTGATTTCGAGGAATTCATA+GGG 0.554513 8.2:-63792633 None:intergenic
AGAAGATCGGACGGCTGCCG+AGG 0.559266 8.2:+63793360 MS.gene019397:CDS
GTGGGCTCTATCTTTGCCTG+AGG 0.562373 8.2:+63793280 MS.gene019397:CDS
CGAAGGTGGAACAACATTGG+TGG 0.568199 8.2:-63792890 None:intergenic
GATTGATTGGGATCGGAGGA+TGG 0.568923 8.2:-63792708 None:intergenic
GGGATCGGAGGATGGTGGCA+CGG 0.570716 8.2:-63792700 None:intergenic
AAGGCGGTGGATGGTTTGGG+AGG 0.574865 8.2:-63792788 None:intergenic
TGGGCTCTATCTTTGCCTGA+GGG 0.574915 8.2:+63793281 MS.gene019397:CDS
GGAGGCACGTGGGGTGCACG+TGG 0.576950 8.2:+63793448 MS.gene019397:CDS
ATCGTTAATGAAACGAAGCT+CGG 0.583980 8.2:-63793225 None:intergenic
ATCCATGGATCAGAGACACT+TGG 0.585274 8.2:-63793035 None:intergenic
GTTTGGGAGGAAGATGCGAA+TGG 0.591093 8.2:-63792775 None:intergenic
GGAACTCTTTGATCCTGCTA+AGG 0.595599 8.2:+63793505 MS.gene019397:CDS
TGGGAGGAAGATGCGAATGG+AGG 0.596067 8.2:-63792772 None:intergenic
GACGGTGCTCTGGTGTGAGA+CGG 0.599030 8.2:-63792950 None:intergenic
ATCAGCAAGTGATCTTATGT+GGG 0.600680 8.2:+63793262 MS.gene019397:CDS
AACAGATTGATTGGGATCGG+AGG 0.603518 8.2:-63792712 None:intergenic
TCTCTCCTCTTAAGATCCAA+GGG 0.605883 8.2:+63793156 MS.gene019397:CDS
GAGGAATTCATAGGGATCGA+TGG 0.607240 8.2:-63792625 None:intergenic
CTCATTCTCTACTTCCATGG+TGG 0.607938 8.2:+63792831 MS.gene019397:CDS
GGTAACATAGCGTATTTCGC+AGG 0.611649 8.2:+63793110 MS.gene019397:CDS
AGCTTAGCTGCGGAAGAAGG+CGG 0.614328 8.2:-63792804 None:intergenic
TCTTAAGAGGAGAGAGATCG+AGG 0.616358 8.2:-63793148 None:intergenic
CTTTGTTAATGGCTACGGTG+GGG 0.624764 8.2:+63793385 MS.gene019397:CDS
CAGCGTCATCATAGGCAGCA+GGG 0.627063 8.2:-63792974 None:intergenic
GGTGGAACAACATTGGTGGA+AGG 0.628176 8.2:-63792886 None:intergenic
GAAATCAAGCTCAACCCTGA+CGG 0.629353 8.2:+63792648 MS.gene019397:CDS
TTAGCTGCGGAAGAAGGCGG+TGG 0.632038 8.2:-63792801 None:intergenic
ACATTGGTGGAAGGAGATGG+AGG 0.648420 8.2:-63792877 None:intergenic
CATGGAAGTAGAGAATGAGA+GGG 0.650043 8.2:-63792827 None:intergenic
GAATTCATAGGGATCGATGG+TGG 0.658016 8.2:-63792622 None:intergenic
AGCGGAAGAAACCACCACCA+TGG 0.663365 8.2:-63792845 None:intergenic
TACAACAATCGGTATTTGGG+CGG 0.668880 8.2:-63792913 None:intergenic
TTGATGGGAAGTAGTGCAGG+TGG 0.669706 8.2:+63793089 MS.gene019397:CDS
AATGAGAGGGAGCTTAGCTG+CGG 0.679381 8.2:-63792814 None:intergenic
TGATTGGGATCGGAGGATGG+TGG 0.686331 8.2:-63792705 None:intergenic
TATACGGTGAGAAGATCGGA+CGG 0.716166 8.2:+63793351 MS.gene019397:CDS
TGTGAGACGGTGATCAACTG+AGG 0.747102 8.2:-63792937 None:intergenic
TAGCCATTAACAAAGCACCT+CGG 0.752093 8.2:-63793377 None:intergenic
TCCATGGATTAGAGACAACG+TGG 0.752565 8.2:+63793049 MS.gene019397:CDS
AGAGGACTAAGTATCAACCG+AGG 0.780180 8.2:-63793564 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGATAAAACAGATTGATT+GGG - chr8.2:63792723-63792742 None:intergenic 20.0%
!! TTTAGATAAAACAGATTGAT+TGG - chr8.2:63792724-63792743 None:intergenic 20.0%
! GTATTGTAATCCAAAAGTTT+CGG + chr8.2:63793322-63793341 MS.gene019397:CDS 25.0%
!!! ATAATGAATGCACCATTTTT+TGG + chr8.2:63793182-63793201 MS.gene019397:CDS 25.0%
AAAGTTTCGGATGTGATATA+CGG + chr8.2:63793335-63793354 MS.gene019397:CDS 30.0%
AAGCATTAATTGAGTACGTT+AGG + chr8.2:63793531-63793550 MS.gene019397:CDS 30.0%
CGTTAGGAAATTTATTTCCT+CGG + chr8.2:63793547-63793566 MS.gene019397:CDS 30.0%
TAAAACAGATTGATTGGGAT+CGG - chr8.2:63792718-63792737 None:intergenic 30.0%
TTGATTTCGAGGAATTCATA+GGG - chr8.2:63792636-63792655 None:intergenic 30.0%
! ATAAGATCACTTGCTGATAA+GGG - chr8.2:63793260-63793279 None:intergenic 30.0%
! TATATCACATCCGAAACTTT+TGG - chr8.2:63793335-63793354 None:intergenic 30.0%
! TTTGATAACTGCTTCTTGAT+GGG + chr8.2:63793074-63793093 MS.gene019397:CDS 30.0%
ATCAGCAAGTGATCTTATGT+GGG + chr8.2:63793262-63793281 MS.gene019397:CDS 35.0%
ATCGTTAATGAAACGAAGCT+CGG - chr8.2:63793228-63793247 None:intergenic 35.0%
CTTGATTTCGAGGAATTCAT+AGG - chr8.2:63792637-63792656 None:intergenic 35.0%
TATCAGCAAGTGATCTTATG+TGG + chr8.2:63793261-63793280 MS.gene019397:CDS 35.0%
! AAAGGAGCTAGTGAAGATTT+TGG + chr8.2:63793427-63793446 MS.gene019397:CDS 35.0%
! CATAAGATCACTTGCTGATA+AGG - chr8.2:63793261-63793280 None:intergenic 35.0%
! CTTTGATAACTGCTTCTTGA+TGG + chr8.2:63793073-63793092 MS.gene019397:CDS 35.0%
!!! AGTCTGTTTTTTGTGAGGAT+GGG + chr8.2:63793471-63793490 MS.gene019397:CDS 35.0%
!!! ATGAATGCACCATTTTTTGG+TGG + chr8.2:63793185-63793204 MS.gene019397:CDS 35.0%
!!! TGAATGCACCATTTTTTGGT+GGG + chr8.2:63793186-63793205 MS.gene019397:CDS 35.0%
AGGCTACAACAATCGGTATT+TGG - chr8.2:63792920-63792939 None:intergenic 40.0%
ATAAGCCCTTGGATCTTAAG+AGG - chr8.2:63793164-63793183 None:intergenic 40.0%
ATTAATGCTTGTGCCTTAGC+AGG - chr8.2:63793521-63793540 None:intergenic 40.0%
CATGGAAGTAGAGAATGAGA+GGG - chr8.2:63792830-63792849 None:intergenic 40.0%
GGCTACAACAATCGGTATTT+GGG - chr8.2:63792919-63792938 None:intergenic 40.0%
GTGATATACGGTGAGAAGAT+CGG + chr8.2:63793347-63793366 MS.gene019397:CDS 40.0%
GTGCATTCATTATAAGCCCT+TGG - chr8.2:63793175-63793194 None:intergenic 40.0%
TACAACAATCGGTATTTGGG+CGG - chr8.2:63792916-63792935 None:intergenic 40.0%
TCAACTGAGGCTACAACAAT+CGG - chr8.2:63792927-63792946 None:intergenic 40.0%
TCTCTCCTCTTAAGATCCAA+GGG + chr8.2:63793156-63793175 MS.gene019397:CDS 40.0%
TGAATCAACAGCGTCATCAT+AGG - chr8.2:63792985-63793004 None:intergenic 40.0%
! AGGTGCTTTGTTAATGGCTA+CGG + chr8.2:63793380-63793399 MS.gene019397:CDS 40.0%
! TAGCCATTAACAAAGCACCT+CGG - chr8.2:63793380-63793399 None:intergenic 40.0%
!!! ATCGATGGTGGAGTTTTGTT+TGG - chr8.2:63792613-63792632 None:intergenic 40.0%
!!! ATGGTGGAGTTTTGTTTGGA+AGG - chr8.2:63792609-63792628 None:intergenic 40.0%
!!! GAATGCACCATTTTTTGGTG+GGG + chr8.2:63793187-63793206 MS.gene019397:CDS 40.0%
!!! GAGTCTGTTTTTTGTGAGGA+TGG + chr8.2:63793470-63793489 MS.gene019397:CDS 40.0%
AACAGATTGATTGGGATCGG+AGG - chr8.2:63792715-63792734 None:intergenic 45.0%
ACAACATTGGTGGAAGGAGA+TGG - chr8.2:63792883-63792902 None:intergenic 45.0%
AGGTGTTTGTGGCTGTGTTT+AGG - chr8.2:63792755-63792774 None:intergenic 45.0%
ATCCAAGTGTCTCTGATCCA+TGG + chr8.2:63793033-63793052 MS.gene019397:CDS 45.0%
ATCCATGGATCAGAGACACT+TGG - chr8.2:63793038-63793057 None:intergenic 45.0%
ATTCTCTACTTCCATGGTGG+TGG + chr8.2:63792834-63792853 MS.gene019397:CDS 45.0%
CCATGGAAGTAGAGAATGAG+AGG - chr8.2:63792831-63792850 None:intergenic 45.0%
CCTCTCATTCTCTACTTCCA+TGG + chr8.2:63792828-63792847 MS.gene019397:CDS 45.0%
CTCATTCTCTACTTCCATGG+TGG + chr8.2:63792831-63792850 MS.gene019397:CDS 45.0%
CTCTCTCCTCTTAAGATCCA+AGG + chr8.2:63793155-63793174 MS.gene019397:CDS 45.0%
CTTTGTTAATGGCTACGGTG+GGG + chr8.2:63793385-63793404 MS.gene019397:CDS 45.0%
GAAATCAAGCTCAACCCTGA+CGG + chr8.2:63792648-63792667 MS.gene019397:CDS 45.0%
GAATTCATAGGGATCGATGG+TGG - chr8.2:63792625-63792644 None:intergenic 45.0%
GAGGAATTCATAGGGATCGA+TGG - chr8.2:63792628-63792647 None:intergenic 45.0%
GGAACTCTTTGATCCTGCTA+AGG + chr8.2:63793505-63793524 MS.gene019397:CDS 45.0%
GGTAACATAGCGTATTTCGC+AGG + chr8.2:63793110-63793129 MS.gene019397:CDS 45.0%
TATACGGTGAGAAGATCGGA+CGG + chr8.2:63793351-63793370 MS.gene019397:CDS 45.0%
TCCACGTTGTCTCTAATCCA+TGG - chr8.2:63793053-63793072 None:intergenic 45.0%
TCTTAAGAGGAGAGAGATCG+AGG - chr8.2:63793151-63793170 None:intergenic 45.0%
TTCTTGATGGGAAGTAGTGC+AGG + chr8.2:63793086-63793105 MS.gene019397:CDS 45.0%
! AGACACTTGGATTTTGCGCT+TGG - chr8.2:63793025-63793044 None:intergenic 45.0%
! GACACTTGGATTTTGCGCTT+GGG - chr8.2:63793024-63793043 None:intergenic 45.0%
! GACGTTGTCGTTTCTTGTGA+GGG - chr8.2:63792676-63792695 None:intergenic 45.0%
! GCTTTGTTAATGGCTACGGT+GGG + chr8.2:63793384-63793403 MS.gene019397:CDS 45.0%
! GGAGCTAGTGAAGATTTTGG+AGG + chr8.2:63793430-63793449 MS.gene019397:CDS 45.0%
! TCCTTTTGCCTATCCACCAA+GGG - chr8.2:63793413-63793432 None:intergenic 45.0%
! TGCTTTGTTAATGGCTACGG+TGG + chr8.2:63793383-63793402 MS.gene019397:CDS 45.0%
!! TCCATGGATTAGAGACAACG+TGG + chr8.2:63793049-63793068 MS.gene019397:CDS 45.0%
!! TGAAGATTTTGGAGGCACGT+GGG + chr8.2:63793438-63793457 MS.gene019397:CDS 45.0%
!!! CGTGGAGTCTGTTTTTTGTG+AGG + chr8.2:63793466-63793485 MS.gene019397:CDS 45.0%
AAGAAGGCGGTGGATGGTTT+GGG - chr8.2:63792794-63792813 None:intergenic 50.0%
AATGAGAGGGAGCTTAGCTG+CGG - chr8.2:63792817-63792836 None:intergenic 50.0%
ACATTGGTGGAAGGAGATGG+AGG - chr8.2:63792880-63792899 None:intergenic 50.0%
AGATGGAGGAAGGATGGTAG+CGG - chr8.2:63792866-63792885 None:intergenic 50.0%
CAGGGTTGAGCTTGATTTCG+AGG - chr8.2:63792647-63792666 None:intergenic 50.0%
CGAAGGTGGAACAACATTGG+TGG - chr8.2:63792893-63792912 None:intergenic 50.0%
CTCTGGACCCCACCAAAAAA+TGG - chr8.2:63793197-63793216 None:intergenic 50.0%
CTTTGCCTGAGGGCAAAGAT+CGG + chr8.2:63793291-63793310 MS.gene019397:CDS 50.0%
GATTGATTGGGATCGGAGGA+TGG - chr8.2:63792711-63792730 None:intergenic 50.0%
GGTGGAACAACATTGGTGGA+AGG - chr8.2:63792889-63792908 None:intergenic 50.0%
GTTTGGGAGGAAGATGCGAA+TGG - chr8.2:63792778-63792797 None:intergenic 50.0%
TGGGCTCTATCTTTGCCTGA+GGG + chr8.2:63793281-63793300 MS.gene019397:CDS 50.0%
TGTGAGACGGTGATCAACTG+AGG - chr8.2:63792940-63792959 None:intergenic 50.0%
TTCTTGTGAGGGAACCGTCA+GGG - chr8.2:63792665-63792684 None:intergenic 50.0%
TTGATGGGAAGTAGTGCAGG+TGG + chr8.2:63793089-63793108 MS.gene019397:CDS 50.0%
TTTCTTGTGAGGGAACCGTC+AGG - chr8.2:63792666-63792685 None:intergenic 50.0%
TTTGCCTGAGGGCAAAGATC+GGG + chr8.2:63793292-63793311 MS.gene019397:CDS 50.0%
! CTCCTTTTGCCTATCCACCA+AGG - chr8.2:63793414-63793433 None:intergenic 50.0%
! CTGCCGAGGTGCTTTGTTAA+TGG + chr8.2:63793374-63793393 MS.gene019397:CDS 50.0%
! GGACGTTGTCGTTTCTTGTG+AGG - chr8.2:63792677-63792696 None:intergenic 50.0%
! TCCCTTGGTGGATAGGCAAA+AGG + chr8.2:63793409-63793428 MS.gene019397:CDS 50.0%
! TGAGGATGGGTTTCATGCTG+TGG + chr8.2:63793484-63793503 MS.gene019397:CDS 50.0%
!! ACGCTGTTGATTCACTGCTC+TGG + chr8.2:63792991-63793010 MS.gene019397:CDS 50.0%
!! GAAGATTTTGGAGGCACGTG+GGG + chr8.2:63793439-63793458 MS.gene019397:CDS 50.0%
!! GATGCGAATGGAGGTGTTTG+TGG - chr8.2:63792766-63792785 None:intergenic 50.0%
!! GTGAAGATTTTGGAGGCACG+TGG + chr8.2:63793437-63793456 MS.gene019397:CDS 50.0%
!!! CATTTTTTGGTGGGGTCCAG+AGG + chr8.2:63793195-63793214 MS.gene019397:CDS 50.0%
AATCGGTATTTGGGCGGCGA+AGG - chr8.2:63792910-63792929 None:intergenic 55.0%
ACAGCGTCATCATAGGCAGC+AGG - chr8.2:63792978-63792997 None:intergenic 55.0%
AGCGGAAGAAACCACCACCA+TGG - chr8.2:63792848-63792867 None:intergenic 55.0%
AGCTTAGCTGCGGAAGAAGG+CGG - chr8.2:63792807-63792826 None:intergenic 55.0%
CAGCGTCATCATAGGCAGCA+GGG - chr8.2:63792977-63792996 None:intergenic 55.0%
CATCATAGGCAGCAGGGAGA+CGG - chr8.2:63792971-63792990 None:intergenic 55.0%
CGGCGAAGGTGGAACAACAT+TGG - chr8.2:63792896-63792915 None:intergenic 55.0%
GAAGAAGGCGGTGGATGGTT+TGG - chr8.2:63792795-63792814 None:intergenic 55.0%
GAAGCTCGGATTCTGTCCTC+TGG - chr8.2:63793214-63793233 None:intergenic 55.0%
GGAAGGAGATGGAGGAAGGA+TGG - chr8.2:63792872-63792891 None:intergenic 55.0%
GTGGGCTCTATCTTTGCCTG+AGG + chr8.2:63793280-63793299 MS.gene019397:CDS 55.0%
TGATCCCGATCTTTGCCCTC+AGG - chr8.2:63793299-63793318 None:intergenic 55.0%
TGATTGGGATCGGAGGATGG+TGG - chr8.2:63792708-63792727 None:intergenic 55.0%
TGGGAGGAAGATGCGAATGG+AGG - chr8.2:63792775-63792794 None:intergenic 55.0%
TGGTGGAAGGAGATGGAGGA+AGG - chr8.2:63792876-63792895 None:intergenic 55.0%
GACGGTGCTCTGGTGTGAGA+CGG - chr8.2:63792953-63792972 None:intergenic 60.0%
GGGAGCTTAGCTGCGGAAGA+AGG - chr8.2:63792810-63792829 None:intergenic 60.0%
TTAGCTGCGGAAGAAGGCGG+TGG - chr8.2:63792804-63792823 None:intergenic 60.0%
! AAGGCGGTGGATGGTTTGGG+AGG - chr8.2:63792791-63792810 None:intergenic 60.0%
! GTGGGGATCCCTTGGTGGAT+AGG + chr8.2:63793402-63793421 MS.gene019397:CDS 60.0%
AGAAGATCGGACGGCTGCCG+AGG + chr8.2:63793360-63793379 MS.gene019397:CDS 65.0%
CGGTATTTGGGCGGCGAAGG+TGG - chr8.2:63792907-63792926 None:intergenic 65.0%
CTACGGTGGGGATCCCTTGG+TGG + chr8.2:63793397-63793416 MS.gene019397:CDS 65.0%
CTGCGGAAGAAGGCGGTGGA+TGG - chr8.2:63792800-63792819 None:intergenic 65.0%
TGGCTACGGTGGGGATCCCT+TGG + chr8.2:63793394-63793413 MS.gene019397:CDS 65.0%
! ATCGGAGGATGGTGGCACGG+TGG - chr8.2:63792700-63792719 None:intergenic 65.0%
! GGGATCGGAGGATGGTGGCA+CGG - chr8.2:63792703-63792722 None:intergenic 65.0%
! TCGGAGGATGGTGGCACGGT+GGG - chr8.2:63792699-63792718 None:intergenic 65.0%
GCAGCAGGGAGACGGTGCTC+TGG - chr8.2:63792963-63792982 None:intergenic 70.0%
! CGGAGGATGGTGGCACGGTG+GGG - chr8.2:63792698-63792717 None:intergenic 70.0%
! GGAGGCACGTGGGGTGCACG+TGG + chr8.2:63793448-63793467 MS.gene019397:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 63792591 63793580 63792591 ID=MS.gene019397
chr8.2 mRNA 63792591 63793580 63792591 ID=MS.gene019397.t1;Parent=MS.gene019397
chr8.2 exon 63792591 63793580 63792591 ID=MS.gene019397.t1.exon1;Parent=MS.gene019397.t1
chr8.2 CDS 63792591 63793580 63792591 ID=cds.MS.gene019397.t1;Parent=MS.gene019397.t1
Gene Sequence

>MS.gene019397

ATGGCAGAATCATCACCTTCCAAACAAAACTCCACCATCGATCCCTATGAATTCCTCGAAATCAAGCTCAACCCTGACGGTTCCCTCACAAGAAACGACAACGTCCCCACCGTGCCACCATCCTCCGATCCCAATCAATCTGTTTTATCTAAAGATATCATCCTAAACACAGCCACAAACACCTCCATTCGCATCTTCCTCCCAAACCATCCACCGCCTTCTTCCGCAGCTAAGCTCCCTCTCATTCTCTACTTCCATGGTGGTGGTTTCTTCCGCTACCATCCTTCCTCCATCTCCTTCCACCAATGTTGTTCCACCTTCGCCGCCCAAATACCGATTGTTGTAGCCTCAGTTGATCACCGTCTCACACCAGAGCACCGTCTCCCTGCTGCCTATGATGACGCTGTTGATTCACTGCTCTGGCTCAGAGCCCAAGCGCAAAATCCAAGTGTCTCTGATCCATGGATTAGAGACAACGTGGACTTTGATAACTGCTTCTTGATGGGAAGTAGTGCAGGTGGTAACATAGCGTATTTCGCAGGTCTACGCGCTCTTGACCTCGATCTCTCTCCTCTTAAGATCCAAGGGCTTATAATGAATGCACCATTTTTTGGTGGGGTCCAGAGGACAGAATCCGAGCTTCGTTTCATTAACGATTATATACTACCCTTATCAGCAAGTGATCTTATGTGGGCTCTATCTTTGCCTGAGGGCAAAGATCGGGATCACGTGTATTGTAATCCAAAAGTTTCGGATGTGATATACGGTGAGAAGATCGGACGGCTGCCGAGGTGCTTTGTTAATGGCTACGGTGGGGATCCCTTGGTGGATAGGCAAAAGGAGCTAGTGAAGATTTTGGAGGCACGTGGGGTGCACGTGGAGTCTGTTTTTTGTGAGGATGGGTTTCATGCTGTGGAACTCTTTGATCCTGCTAAGGCACAAGCATTAATTGAGTACGTTAGGAAATTTATTTCCTCGGTTGATACTTAG
Protein sequence

>MS.gene019397.t1

MAESSPSKQNSTIDPYEFLEIKLNPDGSLTRNDNVPTVPPSSDPNQSVLSKDIILNTATNTSIRIFLPNHPPPSSAAKLPLILYFHGGGFFRYHPSSISFHQCCSTFAAQIPIVVASVDHRLTPEHRLPAAYDDAVDSLLWLRAQAQNPSVSDPWIRDNVDFDNCFLMGSSAGGNIAYFAGLRALDLDLSPLKIQGLIMNAPFFGGVQRTESELRFINDYILPLSASDLMWALSLPEGKDRDHVYCNPKVSDVIYGEKIGRLPRCFVNGYGGDPLVDRQKELVKILEARGVHVESVFCEDGFHAVELFDPAKAQALIEYVRKFISSVDT