Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019468.t1 | XP_013443752.1 | 63.8 | 403 | 131 | 7 | 14 | 406 | 5 | 402 | 7.30E-135 | 490.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019468.t1 | Q9SD53 | 30.5 | 371 | 217 | 11 | 48 | 400 | 46 | 393 | 2.4e-25 | 118.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019468.t1 | A0A072TK14 | 63.8 | 403 | 131 | 7 | 14 | 406 | 5 | 402 | 5.2e-135 | 490.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019468 | MS.gene38854 | PPI |
| MS.gene019468 | MS.gene91809 | PPI |
| MS.gene019468 | MS.gene022561 | PPI |
| MS.gene019468 | MS.gene055354 | PPI |
| MS.gene061336 | MS.gene019468 | PPI |
| MS.gene019468 | MS.gene061337 | PPI |
| MS.gene019468 | MS.gene061334 | PPI |
| MS.gene019468 | MS.gene055358 | PPI |
| MS.gene019468 | MS.gene055356 | PPI |
| MS.gene055356 | MS.gene019468 | PPI |
| MS.gene019468 | MS.gene055357 | PPI |
| MS.gene019468 | MS.gene022560 | PPI |
| MS.gene019468 | MS.gene061335 | PPI |
| MS.gene019468 | MS.gene91806 | PPI |
| MS.gene019468 | MS.gene022562 | PPI |
| MS.gene019468 | MS.gene91808 | PPI |
| MS.gene91807 | MS.gene019468 | PPI |
| MS.gene055354 | MS.gene019468 | PPI |
| MS.gene022559 | MS.gene019468 | PPI |
| MS.gene019468 | MS.gene055359 | PPI |
| MS.gene019468 | MS.gene91805 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019468.t1 | MTR_8g005225 | 62.381 | 420 | 134 | 8 | 1 | 410 | 1 | 406 | 6.40e-172 | 491 |
| MS.gene019468.t1 | MTR_8g005265 | 52.910 | 378 | 155 | 9 | 48 | 407 | 27 | 399 | 1.11e-120 | 360 |
| MS.gene019468.t1 | MTR_8g005235 | 45.714 | 385 | 188 | 7 | 32 | 406 | 13 | 386 | 1.50e-101 | 311 |
| MS.gene019468.t1 | MTR_8g006525 | 45.269 | 391 | 194 | 9 | 23 | 406 | 6 | 383 | 1.60e-100 | 308 |
| MS.gene019468.t1 | MTR_0209s0060 | 45.722 | 374 | 186 | 6 | 41 | 406 | 22 | 386 | 1.06e-99 | 305 |
| MS.gene019468.t1 | MTR_0209s0030 | 45.722 | 374 | 186 | 6 | 41 | 406 | 22 | 386 | 1.06e-99 | 305 |
| MS.gene019468.t1 | MTR_8g005325 | 44.552 | 413 | 202 | 10 | 7 | 406 | 18 | 416 | 7.69e-99 | 305 |
| MS.gene019468.t1 | MTR_8g005295 | 39.957 | 468 | 192 | 12 | 12 | 406 | 3 | 454 | 1.14e-91 | 287 |
| MS.gene019468.t1 | MTR_8g005285 | 40.355 | 451 | 192 | 11 | 16 | 406 | 7 | 440 | 1.43e-91 | 287 |
| MS.gene019468.t1 | MTR_4g112660 | 42.623 | 366 | 130 | 11 | 48 | 397 | 6 | 307 | 3.49e-79 | 250 |
| MS.gene019468.t1 | MTR_6g009170 | 37.466 | 371 | 191 | 11 | 41 | 402 | 18 | 356 | 1.63e-53 | 185 |
| MS.gene019468.t1 | MTR_6g009590 | 34.908 | 381 | 210 | 12 | 25 | 400 | 1 | 348 | 1.17e-51 | 180 |
| MS.gene019468.t1 | MTR_0024s0080 | 35.734 | 361 | 193 | 12 | 42 | 400 | 20 | 343 | 3.69e-50 | 176 |
| MS.gene019468.t1 | MTR_6g010810 | 35.967 | 367 | 194 | 14 | 50 | 410 | 24 | 355 | 3.74e-50 | 176 |
| MS.gene019468.t1 | MTR_6g010920 | 34.819 | 359 | 191 | 12 | 48 | 400 | 25 | 346 | 1.67e-49 | 174 |
| MS.gene019468.t1 | MTR_6g009610 | 35.674 | 356 | 194 | 12 | 48 | 400 | 25 | 348 | 6.13e-49 | 173 |
| MS.gene019468.t1 | MTR_3g079390 | 34.204 | 383 | 191 | 13 | 46 | 400 | 38 | 387 | 7.46e-49 | 173 |
| MS.gene019468.t1 | MTR_6g011050 | 34.637 | 358 | 194 | 11 | 48 | 400 | 24 | 346 | 1.34e-48 | 172 |
| MS.gene019468.t1 | MTR_3g107590 | 37.067 | 375 | 190 | 12 | 39 | 400 | 17 | 358 | 8.74e-48 | 170 |
| MS.gene019468.t1 | MTR_6g011060 | 34.759 | 374 | 195 | 13 | 41 | 400 | 18 | 356 | 4.70e-47 | 168 |
| MS.gene019468.t1 | MTR_6g010890 | 33.784 | 370 | 205 | 11 | 41 | 400 | 18 | 357 | 1.61e-45 | 164 |
| MS.gene019468.t1 | MTR_2g041180 | 30.328 | 366 | 213 | 11 | 48 | 400 | 50 | 386 | 2.81e-34 | 134 |
| MS.gene019468.t1 | MTR_5g016570 | 28.910 | 422 | 241 | 12 | 13 | 400 | 68 | 464 | 9.73e-34 | 133 |
| MS.gene019468.t1 | MTR_2g035640 | 32.915 | 319 | 175 | 9 | 86 | 399 | 1 | 285 | 2.21e-33 | 129 |
| MS.gene019468.t1 | MTR_7g011980 | 31.421 | 366 | 143 | 14 | 40 | 400 | 17 | 279 | 3.37e-32 | 125 |
| MS.gene019468.t1 | MTR_2g036320 | 29.647 | 425 | 252 | 15 | 36 | 437 | 56 | 456 | 1.19e-31 | 127 |
| MS.gene019468.t1 | MTR_6g010850 | 36.704 | 267 | 138 | 10 | 136 | 400 | 49 | 286 | 4.05e-30 | 120 |
| MS.gene019468.t1 | MTR_5g086340 | 26.536 | 407 | 244 | 15 | 28 | 415 | 13 | 383 | 8.16e-25 | 107 |
| MS.gene019468.t1 | MTR_6g009580 | 35.000 | 180 | 93 | 4 | 222 | 400 | 16 | 172 | 3.06e-20 | 90.1 |
| MS.gene019468.t1 | MTR_6g009600 | 32.308 | 130 | 70 | 2 | 272 | 400 | 22 | 134 | 3.25e-16 | 76.3 |
| MS.gene019468.t1 | MTR_7g060020 | 23.058 | 412 | 252 | 16 | 16 | 400 | 3 | 376 | 7.04e-15 | 77.0 |
| MS.gene019468.t1 | MTR_8g042830 | 25.126 | 398 | 198 | 15 | 27 | 401 | 24 | 344 | 4.62e-14 | 74.3 |
| MS.gene019468.t1 | MTR_0067s0010 | 25.635 | 394 | 225 | 18 | 41 | 399 | 41 | 401 | 3.10e-13 | 72.0 |
| MS.gene019468.t1 | MTR_5g086230 | 35.032 | 157 | 85 | 8 | 49 | 192 | 29 | 181 | 2.24e-12 | 66.2 |
| MS.gene019468.t1 | MTR_8g037920 | 24.217 | 351 | 223 | 12 | 70 | 399 | 7 | 335 | 2.90e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019468.t1 | AT2G44930 | 29.825 | 399 | 217 | 11 | 43 | 410 | 79 | 445 | 1.00e-43 | 161 |
| MS.gene019468.t1 | AT2G28580 | 30.790 | 367 | 217 | 8 | 47 | 406 | 108 | 444 | 2.44e-43 | 160 |
| MS.gene019468.t1 | AT2G28580 | 30.790 | 367 | 217 | 8 | 47 | 406 | 122 | 458 | 3.00e-43 | 160 |
| MS.gene019468.t1 | AT2G28580 | 30.446 | 381 | 217 | 10 | 47 | 406 | 40 | 393 | 6.47e-42 | 155 |
| MS.gene019468.t1 | AT2G28580 | 30.446 | 381 | 217 | 10 | 47 | 406 | 108 | 461 | 1.70e-41 | 155 |
| MS.gene019468.t1 | AT2G28580 | 30.446 | 381 | 217 | 10 | 47 | 406 | 122 | 475 | 1.73e-41 | 155 |
| MS.gene019468.t1 | AT4G31980 | 28.691 | 359 | 215 | 12 | 48 | 400 | 293 | 616 | 1.04e-39 | 152 |
| MS.gene019468.t1 | AT3G50150 | 27.926 | 376 | 228 | 11 | 50 | 405 | 92 | 444 | 5.36e-37 | 142 |
| MS.gene019468.t1 | AT2G28580 | 30.595 | 353 | 197 | 10 | 47 | 378 | 122 | 447 | 5.63e-37 | 141 |
| MS.gene019468.t1 | AT3G50170 | 27.320 | 388 | 222 | 10 | 50 | 405 | 115 | 474 | 1.29e-35 | 139 |
| MS.gene019468.t1 | AT1G67150 | 29.700 | 367 | 213 | 11 | 50 | 402 | 8 | 343 | 1.94e-34 | 133 |
| MS.gene019468.t1 | AT1G67150 | 29.700 | 367 | 213 | 11 | 50 | 402 | 8 | 343 | 1.94e-34 | 133 |
| MS.gene019468.t1 | AT5G11290 | 26.954 | 371 | 220 | 15 | 48 | 408 | 33 | 362 | 2.45e-34 | 133 |
| MS.gene019468.t1 | AT3G50180 | 28.535 | 389 | 224 | 12 | 50 | 419 | 180 | 533 | 5.04e-34 | 135 |
| MS.gene019468.t1 | AT1G67150 | 29.459 | 370 | 212 | 11 | 50 | 401 | 8 | 346 | 6.65e-34 | 132 |
| MS.gene019468.t1 | AT3G50160 | 28.418 | 373 | 219 | 11 | 44 | 405 | 101 | 436 | 1.18e-33 | 132 |
| MS.gene019468.t1 | AT3G50120 | 27.273 | 385 | 228 | 10 | 50 | 405 | 105 | 466 | 2.05e-33 | 132 |
| MS.gene019468.t1 | AT2G36430 | 28.962 | 366 | 225 | 11 | 48 | 404 | 45 | 384 | 2.86e-31 | 125 |
| MS.gene019468.t1 | AT3G50140 | 27.968 | 379 | 223 | 11 | 50 | 401 | 115 | 470 | 1.15e-30 | 124 |
| MS.gene019468.t1 | AT3G50130 | 27.394 | 376 | 228 | 9 | 50 | 401 | 141 | 495 | 1.24e-30 | 125 |
| MS.gene019468.t1 | AT3G47200 | 29.491 | 373 | 218 | 11 | 48 | 400 | 46 | 393 | 7.33e-30 | 121 |
| MS.gene019468.t1 | AT3G47200 | 29.491 | 373 | 218 | 11 | 48 | 400 | 46 | 393 | 7.33e-30 | 121 |
| MS.gene019468.t1 | AT3G47210 | 29.526 | 359 | 223 | 9 | 48 | 400 | 93 | 427 | 7.91e-30 | 121 |
| MS.gene019468.t1 | AT1G65985 | 27.317 | 410 | 226 | 12 | 29 | 395 | 2 | 382 | 8.35e-29 | 118 |
| MS.gene019468.t1 | AT1G65985 | 27.317 | 410 | 226 | 12 | 29 | 395 | 2 | 382 | 8.35e-29 | 118 |
| MS.gene019468.t1 | AT3G50190 | 27.297 | 370 | 213 | 11 | 50 | 405 | 98 | 425 | 6.22e-28 | 116 |
| MS.gene019468.t1 | AT1G67150 | 28.883 | 367 | 173 | 13 | 50 | 402 | 8 | 300 | 1.18e-26 | 110 |
| MS.gene019468.t1 | AT3G47250 | 27.105 | 380 | 234 | 12 | 41 | 400 | 54 | 410 | 3.61e-26 | 111 |
| MS.gene019468.t1 | AT3G47250 | 27.105 | 380 | 234 | 12 | 41 | 400 | 54 | 410 | 3.61e-26 | 111 |
| MS.gene019468.t1 | AT3G47250 | 27.105 | 380 | 234 | 12 | 41 | 400 | 54 | 410 | 3.61e-26 | 111 |
| MS.gene019468.t1 | AT5G22540 | 26.870 | 361 | 235 | 9 | 48 | 401 | 31 | 369 | 1.01e-24 | 106 |
| MS.gene019468.t1 | AT5G11290 | 25.526 | 333 | 198 | 14 | 86 | 408 | 1 | 293 | 1.99e-23 | 101 |
| MS.gene019468.t1 | AT5G22550 | 26.382 | 398 | 253 | 10 | 34 | 399 | 30 | 419 | 4.45e-23 | 102 |
| MS.gene019468.t1 | AT3G60470 | 31.674 | 221 | 114 | 5 | 50 | 242 | 34 | 245 | 5.16e-22 | 99.4 |
| MS.gene019468.t1 | AT3G60470 | 35.461 | 141 | 71 | 5 | 275 | 413 | 365 | 487 | 5.85e-14 | 74.3 |
| MS.gene019468.t1 | AT3G44710 | 30.476 | 210 | 129 | 6 | 48 | 247 | 47 | 249 | 3.93e-21 | 96.3 |
| MS.gene019468.t1 | AT3G50170 | 31.073 | 177 | 111 | 4 | 50 | 219 | 115 | 287 | 9.59e-21 | 94.7 |
| MS.gene019468.t1 | AT3G50150 | 25.828 | 302 | 181 | 11 | 50 | 331 | 92 | 370 | 5.08e-20 | 92.8 |
| MS.gene019468.t1 | AT5G22560 | 30.357 | 224 | 127 | 9 | 48 | 249 | 47 | 263 | 1.22e-17 | 85.9 |
| MS.gene019468.t1 | AT3G50140 | 26.861 | 309 | 176 | 11 | 50 | 331 | 115 | 400 | 1.36e-16 | 82.0 |
Find 62 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGATATTGAAGATAAA+TGG | 0.161108 | 8.1:-69011812 | MS.gene019468:CDS |
| TTTATGCGTAGTTCTGTTTC+TGG | 0.195486 | 8.1:+69012539 | None:intergenic |
| CATTGGCTTCAATATTCTTC+TGG | 0.229968 | 8.1:+69012364 | None:intergenic |
| AAAGGTATTGTCGTGCCTTT+TGG | 0.243926 | 8.1:-69012328 | MS.gene019468:CDS |
| CTGGTTGTTCACCTTTAATT+TGG | 0.251419 | 8.1:-69010660 | MS.gene019468:CDS |
| GGAAAGAATAATACATAAAA+AGG | 0.259833 | 8.1:-69012306 | MS.gene019468:CDS |
| TTTGAGACCTTTGTGGATTT+AGG | 0.260963 | 8.1:+69011952 | None:intergenic |
| GAAACATAGTTGCATATAAA+AGG | 0.289156 | 8.1:+69011552 | None:intergenic |
| TAAATCTGCAATTGATCTTC+TGG | 0.293603 | 8.1:-69010377 | MS.gene019468:CDS |
| GAATTGGCAACTATGATAAA+TGG | 0.297712 | 8.1:-69011441 | MS.gene019468:CDS |
| TCAACTTTGTTGCTGTCTTA+AGG | 0.323684 | 8.1:+69011787 | None:intergenic |
| AAAACAAAGAATGTGTTCTT+AGG | 0.330302 | 8.1:-69011614 | MS.gene019468:CDS |
| GAACAGTACGATTCATAATA+TGG | 0.337674 | 8.1:+69012476 | None:intergenic |
| CATGTTAGAAAGTTCGAAAA+TGG | 0.356228 | 8.1:-69012434 | MS.gene019468:CDS |
| CGTAGTTCTGTTTCTGGTAA+TGG | 0.356473 | 8.1:+69012545 | None:intergenic |
| GGAGTGTGTGATTCTGCTTC+TGG | 0.357471 | 8.1:+69012566 | None:intergenic |
| TCATGCTGGTTGTTCACCTT+TGG | 0.372583 | 8.1:-69010614 | MS.gene019468:intron |
| ACTTGGAAGCCATGCAGAAT+TGG | 0.385392 | 8.1:-69011457 | MS.gene019468:CDS |
| GAGTACAGAGACCAAATTAA+AGG | 0.388605 | 8.1:+69010649 | None:intergenic |
| CATGAAAGATAATCAGTTTG+TGG | 0.408150 | 8.1:-69012207 | MS.gene019468:CDS |
| ACACCACTATTGATCTCAAT+TGG | 0.411918 | 8.1:-69012401 | MS.gene019468:CDS |
| TTAAACTGGTTTCTATGCTT+AGG | 0.423889 | 8.1:-69011690 | MS.gene019468:CDS |
| TTGCATATAAAAGGTTGATC+TGG | 0.426916 | 8.1:+69011561 | None:intergenic |
| TGTGATTCTGCTTCTGGTAA+TGG | 0.428564 | 8.1:+69012572 | None:intergenic |
| CATTGATATTGAAGATAAAT+GGG | 0.430099 | 8.1:-69011811 | MS.gene019468:CDS |
| TTTCGTGTAATTTGAGTTGA+GGG | 0.443392 | 8.1:+69011634 | None:intergenic |
| ATGTATTATTCTTTCCCAAA+AGG | 0.447649 | 8.1:+69012313 | None:intergenic |
| GTTCGTGTGCTCTTGTGCCA+CGG | 0.455022 | 8.1:-69010691 | MS.gene019468:CDS |
| GAAATCATTGTTCATGAACT+TGG | 0.458846 | 8.1:-69011474 | MS.gene019468:CDS |
| TTGTGCCACGGGTCATATGC+TGG | 0.478979 | 8.1:-69010679 | MS.gene019468:CDS |
| TTCGTGTGCTCTTGTGCCAC+GGG | 0.481673 | 8.1:-69010690 | MS.gene019468:CDS |
| TCAAGAGGATGTGGAGTTGT+TGG | 0.489740 | 8.1:-69011505 | MS.gene019468:CDS |
| TATCAAAACTCAAGAGGATG+TGG | 0.499110 | 8.1:-69011514 | MS.gene019468:CDS |
| GGTTCTTGCTTAATCTCTTG+AGG | 0.503583 | 8.1:+69012497 | None:intergenic |
| ATCGTACTGTTCTATTTACA+AGG | 0.506366 | 8.1:-69012465 | MS.gene019468:CDS |
| AAGAATATTGAAGCCAATGC+AGG | 0.506975 | 8.1:-69012360 | MS.gene019468:CDS |
| AGGTTACTCTGGTTCAGTGC+AGG | 0.533836 | 8.1:+69010354 | None:intergenic |
| TCTTAGGAACCTCGTCGCAT+TGG | 0.536961 | 8.1:-69011598 | MS.gene019468:CDS |
| AATGCAAGTTCAAGAAAACT+AGG | 0.538917 | 8.1:+69011990 | None:intergenic |
| CACAAGAGCACACGAACTAA+AGG | 0.539682 | 8.1:+69010697 | None:intergenic |
| TCCTATGTCACGGATCATGC+TGG | 0.559888 | 8.1:-69010628 | MS.gene019468:CDS |
| AAGAAAACACAGATCAGATA+CGG | 0.561050 | 8.1:-69012256 | MS.gene019468:CDS |
| CTCTCTTATCAAAACTCAAG+AGG | 0.561343 | 8.1:-69011520 | MS.gene019468:CDS |
| CAACAAAGTTGAATGAGTGT+GGG | 0.562710 | 8.1:-69011776 | MS.gene019468:CDS |
| GAGCCAATTGAGATCAATAG+TGG | 0.568678 | 8.1:+69012398 | None:intergenic |
| GAGAAAATCTGAAAACAAAG+AGG | 0.574035 | 8.1:-69012141 | MS.gene019468:CDS |
| GCAACAAAGTTGAATGAGTG+TGG | 0.574467 | 8.1:-69011777 | MS.gene019468:CDS |
| GTCTCTGTACTCCTATGTCA+CGG | 0.580503 | 8.1:-69010638 | MS.gene019468:CDS |
| TCGAACTTTCTAACATGGTG+AGG | 0.580975 | 8.1:+69012440 | None:intergenic |
| TTACGATGGATGGGATCCAT+CGG | 0.585550 | 8.1:-69011847 | MS.gene019468:CDS |
| TCATAGTTGCCAATTCTGCA+TGG | 0.589875 | 8.1:+69011448 | None:intergenic |
| ACCAGCATGATCCGTGACAT+AGG | 0.603730 | 8.1:+69010627 | None:intergenic |
| TCAAAATCGAGAGGTTACTC+TGG | 0.614366 | 8.1:+69010343 | None:intergenic |
| ATTTGTGCCACAGACTATGA+TGG | 0.624059 | 8.1:-69010727 | MS.gene019468:CDS |
| ATGTTCAAGAAATTTGCCGA+TGG | 0.629758 | 8.1:+69011831 | None:intergenic |
| TAGAAAGTTCGAAAATGGAG+AGG | 0.636738 | 8.1:-69012429 | MS.gene019468:CDS |
| TGGTCTTTGCAAGAATGTTG+TGG | 0.639736 | 8.1:-69011421 | MS.gene019468:intron |
| TTGAAAACCTAAATCCACAA+AGG | 0.651807 | 8.1:-69011959 | MS.gene019468:CDS |
| AACAAAGTTGAATGAGTGTG+GGG | 0.657556 | 8.1:-69011775 | MS.gene019468:CDS |
| TGAACAACCATCATAGTCTG+TGG | 0.677585 | 8.1:+69010720 | None:intergenic |
| AACAACCAGCATATGACCCG+TGG | 0.680230 | 8.1:+69010674 | None:intergenic |
| GACAAAGTTCCAATGCGACG+AGG | 0.697025 | 8.1:+69011589 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATATTATAATACTAAT+TGG | - | chr8.1:69011597-69011616 | MS.gene019468:CDS | 10.0% |
| !! | AAGGCAAAAAAAAAAAAAAA+AGG | + | chr8.1:69012548-69012567 | None:intergenic | 15.0% |
| !! | AACAATACTAGGAAATTAAA+TGG | + | chr8.1:69011802-69011821 | None:intergenic | 20.0% |
| !! | AATTCTTCCAACAAAAAAAA+TGG | + | chr8.1:69010912-69010931 | None:intergenic | 20.0% |
| !! | ACAATACTAGGAAATTAAAT+GGG | + | chr8.1:69011801-69011820 | None:intergenic | 20.0% |
| !! | ACATTGATATTGAAGATAAA+TGG | - | chr8.1:69011144-69011163 | MS.gene019468:intron | 20.0% |
| !! | ATTATAATACTAATTGGAAC+TGG | - | chr8.1:69011603-69011622 | MS.gene019468:CDS | 20.0% |
| !! | CATTGATATTGAAGATAAAT+GGG | - | chr8.1:69011145-69011164 | MS.gene019468:intron | 20.0% |
| !! | GGAAAGAATAATACATAAAA+AGG | - | chr8.1:69010650-69010669 | MS.gene019468:CDS | 20.0% |
| !!! | AAAACATGATTTAGTGTTTT+GGG | + | chr8.1:69011757-69011776 | None:intergenic | 20.0% |
| !!! | AACCACTAATAAGTTTTAAA+GGG | + | chr8.1:69012439-69012458 | None:intergenic | 20.0% |
| !!! | TTTAAAACTTATTAGTGGTT+GGG | - | chr8.1:69012439-69012458 | MS.gene019468:CDS | 20.0% |
| ! | AAAACAAAGAATGTGTTCTT+AGG | - | chr8.1:69011342-69011361 | MS.gene019468:intron | 25.0% |
| ! | AATAATACATAAAAAGGCCT+TGG | - | chr8.1:69010656-69010675 | MS.gene019468:CDS | 25.0% |
| ! | AGTATTTATAGTAGAGGTTT+AGG | - | chr8.1:69012093-69012112 | MS.gene019468:CDS | 25.0% |
| ! | ATGTATTATTCTTTCCCAAA+AGG | + | chr8.1:69010646-69010665 | None:intergenic | 25.0% |
| ! | ATTAAAAATAGAGCTTTACG+AGG | - | chr8.1:69011235-69011254 | MS.gene019468:intron | 25.0% |
| ! | ATTAGTTGAACAACAATACT+AGG | + | chr8.1:69011813-69011832 | None:intergenic | 25.0% |
| ! | CAATACTAGGAAATTAAATG+GGG | + | chr8.1:69011800-69011819 | None:intergenic | 25.0% |
| ! | CAGATTTATATGAGTTCTTA+AGG | + | chr8.1:69012567-69012586 | None:intergenic | 25.0% |
| ! | GAAACATAGTTGCATATAAA+AGG | + | chr8.1:69011407-69011426 | None:intergenic | 25.0% |
| ! | GTGGTAACATACAATTATTA+TGG | - | chr8.1:69011554-69011573 | MS.gene019468:CDS | 25.0% |
| ! | TAAACCTCTACTATAAATAC+TGG | + | chr8.1:69012094-69012113 | None:intergenic | 25.0% |
| ! | TAGAAATTAAACCAACCAAA+CGG | - | chr8.1:69011912-69011931 | MS.gene019468:CDS | 25.0% |
| !! | ACGAGGTTAAATTTTTAAAC+TGG | - | chr8.1:69011252-69011271 | MS.gene019468:intron | 25.0% |
| !! | GAAAACATGATTTAGTGTTT+TGG | + | chr8.1:69011758-69011777 | None:intergenic | 25.0% |
| !!! | CAACCACTAATAAGTTTTAA+AGG | + | chr8.1:69012440-69012459 | None:intergenic | 25.0% |
| !!! | CTTTAAAACTTATTAGTGGT+TGG | - | chr8.1:69012438-69012457 | MS.gene019468:CDS | 25.0% |
| !!! | TAAAGTTTTATGTTTAGCCA+AGG | + | chr8.1:69010676-69010695 | None:intergenic | 25.0% |
| !!! | TTTTGGGTTATATAAACCAA+AGG | + | chr8.1:69011741-69011760 | None:intergenic | 25.0% |
| AAGAAAACACAGATCAGATA+CGG | - | chr8.1:69010700-69010719 | MS.gene019468:CDS | 30.0% | |
| AATGCAAGTTCAAGAAAACT+AGG | + | chr8.1:69010969-69010988 | None:intergenic | 30.0% | |
| ATCGTACTGTTCTATTTACA+AGG | - | chr8.1:69010491-69010510 | MS.gene019468:intron | 30.0% | |
| CATGAAAGATAATCAGTTTG+TGG | - | chr8.1:69010749-69010768 | MS.gene019468:intron | 30.0% | |
| CATGTTAGAAAGTTCGAAAA+TGG | - | chr8.1:69010522-69010541 | MS.gene019468:intron | 30.0% | |
| GAAATCATTGTTCATGAACT+TGG | - | chr8.1:69011482-69011501 | MS.gene019468:CDS | 30.0% | |
| GAACAAATGAAGTCCTTTAA+GGG | - | chr8.1:69012178-69012197 | MS.gene019468:CDS | 30.0% | |
| GAACAGTACGATTCATAATA+TGG | + | chr8.1:69010483-69010502 | None:intergenic | 30.0% | |
| GAATTGGCAACTATGATAAA+TGG | - | chr8.1:69011515-69011534 | MS.gene019468:CDS | 30.0% | |
| GAGAAAATCTGAAAACAAAG+AGG | - | chr8.1:69010815-69010834 | MS.gene019468:intron | 30.0% | |
| TAAATCTGCAATTGATCTTC+TGG | - | chr8.1:69012579-69012598 | MS.gene019468:CDS | 30.0% | |
| TTGAAAACCTAAATCCACAA+AGG | - | chr8.1:69010997-69011016 | MS.gene019468:intron | 30.0% | |
| ! | ATCAGTTTTCTTACTTCCTT+TGG | - | chr8.1:69011722-69011741 | MS.gene019468:CDS | 30.0% |
| ! | CATCAACTTTATTTGTGTTC+CGG | + | chr8.1:69012477-69012496 | None:intergenic | 30.0% |
| ! | CATTTTCGAACTTTCTAACA+TGG | + | chr8.1:69010524-69010543 | None:intergenic | 30.0% |
| ! | CCATCGTAAAAAACTTCTTT+TGG | + | chr8.1:69011098-69011117 | None:intergenic | 30.0% |
| ! | CGTAAAAAACTTCTTTTGGA+AGG | + | chr8.1:69011094-69011113 | None:intergenic | 30.0% |
| ! | TTAAACTGGTTTCTATGCTT+AGG | - | chr8.1:69011266-69011285 | MS.gene019468:intron | 30.0% |
| ! | TTGCATATAAAAGGTTGATC+TGG | + | chr8.1:69011398-69011417 | None:intergenic | 30.0% |
| !! | AAATCAACGATTTTGAGAAC+AGG | + | chr8.1:69010845-69010864 | None:intergenic | 30.0% |
| !! | ATAGTAGAGGTTTAGGTTTT+TGG | - | chr8.1:69012100-69012119 | MS.gene019468:CDS | 30.0% |
| !! | TTTCGTGTAATTTGAGTTGA+GGG | + | chr8.1:69011325-69011344 | None:intergenic | 30.0% |
| !!! | AAGAAGTTTTTTACGATGGA+TGG | - | chr8.1:69011099-69011118 | MS.gene019468:intron | 30.0% |
| !!! | AGAAGTTTTTTACGATGGAT+GGG | - | chr8.1:69011100-69011119 | MS.gene019468:intron | 30.0% |
| !!! | CCAAAAGAAGTTTTTTACGA+TGG | - | chr8.1:69011095-69011114 | MS.gene019468:intron | 30.0% |
| !!! | TCAGCTTCCATTTTTTTTGT+TGG | - | chr8.1:69010902-69010921 | MS.gene019468:intron | 30.0% |
| !!! | TTTTCGTGTAATTTGAGTTG+AGG | + | chr8.1:69011326-69011345 | None:intergenic | 30.0% |
| AACAAAGTTGAATGAGTGTG+GGG | - | chr8.1:69011181-69011200 | MS.gene019468:intron | 35.0% | |
| AAGAATATTGAAGCCAATGC+AGG | - | chr8.1:69010596-69010615 | MS.gene019468:intron | 35.0% | |
| ACACCACTATTGATCTCAAT+TGG | - | chr8.1:69010555-69010574 | MS.gene019468:intron | 35.0% | |
| ATGTTCAAGAAATTTGCCGA+TGG | + | chr8.1:69011128-69011147 | None:intergenic | 35.0% | |
| CAACAAAGTTGAATGAGTGT+GGG | - | chr8.1:69011180-69011199 | MS.gene019468:intron | 35.0% | |
| CTCTCTTATCAAAACTCAAG+AGG | - | chr8.1:69011436-69011455 | MS.gene019468:CDS | 35.0% | |
| CTGGTTGTTCACCTTTAATT+TGG | - | chr8.1:69012296-69012315 | MS.gene019468:CDS | 35.0% | |
| GACTTCATTTGTTCCCAAAA+GGG | + | chr8.1:69012172-69012191 | None:intergenic | 35.0% | |
| GAGTACAGAGACCAAATTAA+AGG | + | chr8.1:69012310-69012329 | None:intergenic | 35.0% | |
| GATGTTGTAATAACCTACAG+AGG | - | chr8.1:69012493-69012512 | MS.gene019468:CDS | 35.0% | |
| GGAACAAATGAAGTCCTTTA+AGG | - | chr8.1:69012177-69012196 | MS.gene019468:CDS | 35.0% | |
| TAGAAAGTTCGAAAATGGAG+AGG | - | chr8.1:69010527-69010546 | MS.gene019468:intron | 35.0% | |
| TATCAAAACTCAAGAGGATG+TGG | - | chr8.1:69011442-69011461 | MS.gene019468:CDS | 35.0% | |
| TCAACTTTGTTGCTGTCTTA+AGG | + | chr8.1:69011172-69011191 | None:intergenic | 35.0% | |
| TGAGCCAGTATTTATAGTAG+AGG | - | chr8.1:69012087-69012106 | MS.gene019468:CDS | 35.0% | |
| ! | CTTTATTTGTGTTCCGGTAT+AGG | + | chr8.1:69012471-69012490 | None:intergenic | 35.0% |
| ! | TTTATGCGTAGTTCTGTTTC+TGG | + | chr8.1:69010420-69010439 | None:intergenic | 35.0% |
| ! | TTTGAGACCTTTGTGGATTT+AGG | + | chr8.1:69011007-69011026 | None:intergenic | 35.0% |
| !! | CATTGGCTTCAATATTCTTC+TGG | + | chr8.1:69010595-69010614 | None:intergenic | 35.0% |
| !! | CGCCCTTTAAAACTTATTAG+TGG | - | chr8.1:69012434-69012453 | MS.gene019468:CDS | 35.0% |
| !!! | TCTTCATTTTGAGACCTTTG+TGG | + | chr8.1:69011014-69011033 | None:intergenic | 35.0% |
| AGACTCAGTTCAACTGTTGT+AGG | - | chr8.1:69011674-69011693 | MS.gene019468:CDS | 40.0% | |
| ATTTGTGCCACAGACTATGA+TGG | - | chr8.1:69012229-69012248 | MS.gene019468:CDS | 40.0% | |
| CAAGTTTAAACTGCCTCTGT+AGG | + | chr8.1:69012509-69012528 | None:intergenic | 40.0% | |
| CAATGCAGGCACAAAAACAA+AGG | - | chr8.1:69010610-69010629 | MS.gene019468:intron | 40.0% | |
| CATTTGACACTATCAACCCA+GGG | + | chr8.1:69011957-69011976 | None:intergenic | 40.0% | |
| CCCTTCTACATTTATCTGGA+CGG | - | chr8.1:69012123-69012142 | MS.gene019468:CDS | 40.0% | |
| CCGTCCAGATAAATGTAGAA+GGG | + | chr8.1:69012126-69012145 | None:intergenic | 40.0% | |
| CTACAGAGGCAGTTTAAACT+TGG | - | chr8.1:69012507-69012526 | MS.gene019468:CDS | 40.0% | |
| GAAAGGAGTCTATGTTGTAG+TGG | + | chr8.1:69012408-69012427 | None:intergenic | 40.0% | |
| GACGAAATTGTCCTACTCAA+AGG | + | chr8.1:69011981-69012000 | None:intergenic | 40.0% | |
| GAGCCAATTGAGATCAATAG+TGG | + | chr8.1:69010561-69010580 | None:intergenic | 40.0% | |
| GCAACAAAGTTGAATGAGTG+TGG | - | chr8.1:69011179-69011198 | MS.gene019468:intron | 40.0% | |
| GGACTTCATTTGTTCCCAAA+AGG | + | chr8.1:69012173-69012192 | None:intergenic | 40.0% | |
| GGTTCTTGCTTAATCTCTTG+AGG | + | chr8.1:69010462-69010481 | None:intergenic | 40.0% | |
| GTGTCAAATGACCTTTGAGT+AGG | - | chr8.1:69011967-69011986 | MS.gene019468:CDS | 40.0% | |
| TCATAGTTGCCAATTCTGCA+TGG | + | chr8.1:69011511-69011530 | None:intergenic | 40.0% | |
| TCATTTGACACTATCAACCC+AGG | + | chr8.1:69011958-69011977 | None:intergenic | 40.0% | |
| TCGAACTTTCTAACATGGTG+AGG | + | chr8.1:69010519-69010538 | None:intergenic | 40.0% | |
| TGAACAACCATCATAGTCTG+TGG | + | chr8.1:69012239-69012258 | None:intergenic | 40.0% | |
| TGGTCTTTGCAAGAATGTTG+TGG | - | chr8.1:69011535-69011554 | MS.gene019468:CDS | 40.0% | |
| TGTGATTCTGCTTCTGGTAA+TGG | + | chr8.1:69010387-69010406 | None:intergenic | 40.0% | |
| TTGGCCCTTCTACATTTATC+TGG | - | chr8.1:69012119-69012138 | MS.gene019468:CDS | 40.0% | |
| ! | CAGTGTATTTTCGTGATCCT+TGG | - | chr8.1:69011651-69011670 | MS.gene019468:CDS | 40.0% |
| !! | AAATACTGGCTCATACGTCT+CGG | + | chr8.1:69012080-69012099 | None:intergenic | 40.0% |
| !! | CGTAGTTCTGTTTCTGGTAA+TGG | + | chr8.1:69010414-69010433 | None:intergenic | 40.0% |
| !!! | AAAGGTATTGTCGTGCCTTT+TGG | - | chr8.1:69010628-69010647 | MS.gene019468:CDS | 40.0% |
| !!! | AAGGTATTGTCGTGCCTTTT+GGG | - | chr8.1:69010629-69010648 | MS.gene019468:CDS | 40.0% |
| !!! | CTTTGTTTTTGTGCCTGCAT+TGG | + | chr8.1:69010612-69010631 | None:intergenic | 40.0% |
| ACAGTTGAACTGAGTCTCCA+AGG | + | chr8.1:69011671-69011690 | None:intergenic | 45.0% | |
| ACCAACCAAACGGATACAGT+CGG | - | chr8.1:69011922-69011941 | MS.gene019468:CDS | 45.0% | |
| ACCTTTGGTCAGTATACTCC+CGG | - | chr8.1:69012357-69012376 | MS.gene019468:CDS | 45.0% | |
| ACTTATTAGTGGTTGGGCGT+CGG | - | chr8.1:69012445-69012464 | MS.gene019468:CDS | 45.0% | |
| ACTTGGAAGCCATGCAGAAT+TGG | - | chr8.1:69011499-69011518 | MS.gene019468:CDS | 45.0% | |
| ATGAGAGCGAATGAACCTCA+TGG | + | chr8.1:69012384-69012403 | None:intergenic | 45.0% | |
| CAACATAGACTCCTTTCGTG+AGG | - | chr8.1:69012411-69012430 | MS.gene019468:CDS | 45.0% | |
| CACTTAGAGCTGTCCCTTAA+AGG | + | chr8.1:69012194-69012213 | None:intergenic | 45.0% | |
| CTGTGTTGTAAGGACAATCG+TGG | - | chr8.1:69012146-69012165 | MS.gene019468:CDS | 45.0% | |
| GCCGTCCAGATAAATGTAGA+AGG | + | chr8.1:69012127-69012146 | None:intergenic | 45.0% | |
| GTCTCTGTACTCCTATGTCA+CGG | - | chr8.1:69012318-69012337 | MS.gene019468:CDS | 45.0% | |
| TCAAGAGGATGTGGAGTTGT+TGG | - | chr8.1:69011451-69011470 | MS.gene019468:CDS | 45.0% | |
| TTACGATGGATGGGATCCAT+CGG | - | chr8.1:69011109-69011128 | MS.gene019468:intron | 45.0% | |
| ! | CACAAGAGCACACGAACTAA+AGG | + | chr8.1:69012262-69012281 | None:intergenic | 45.0% |
| ! | TCATGCTGGTTGTTCACCTT+TGG | - | chr8.1:69012342-69012361 | MS.gene019468:CDS | 45.0% |
| !! | AATACTGGCTCATACGTCTC+GGG | + | chr8.1:69012079-69012098 | None:intergenic | 45.0% |
| AACAACCAGCATATGACCCG+TGG | + | chr8.1:69012285-69012304 | None:intergenic | 50.0% | |
| ACCAGCATGATCCGTGACAT+AGG | + | chr8.1:69012332-69012351 | None:intergenic | 50.0% | |
| AGCGAATGAACCTCATGGTC+CGG | + | chr8.1:69012379-69012398 | None:intergenic | 50.0% | |
| ATCTGGACGGCTGTGTTGTA+AGG | - | chr8.1:69012136-69012155 | MS.gene019468:CDS | 50.0% | |
| CAAGTCCGACTGTATCCGTT+TGG | + | chr8.1:69011930-69011949 | None:intergenic | 50.0% | |
| CATGTACATCACCCAGACCA+CGG | + | chr8.1:69012028-69012047 | None:intergenic | 50.0% | |
| GACAAAGTTCCAATGCGACG+AGG | + | chr8.1:69011370-69011389 | None:intergenic | 50.0% | |
| GGAGTGTGTGATTCTGCTTC+TGG | + | chr8.1:69010393-69010412 | None:intergenic | 50.0% | |
| TCCGACTGTATCCGTTTGGT+TGG | + | chr8.1:69011926-69011945 | None:intergenic | 50.0% | |
| TCCTATGTCACGGATCATGC+TGG | - | chr8.1:69012328-69012347 | MS.gene019468:CDS | 50.0% | |
| TCTGTGGCACAAATCTGCCA+AGG | + | chr8.1:69012223-69012242 | None:intergenic | 50.0% | |
| TCTTAGGAACCTCGTCGCAT+TGG | - | chr8.1:69011358-69011377 | MS.gene019468:intron | 50.0% | |
| ! | AAGGACAATCGTGGCCCTTT+TGG | - | chr8.1:69012155-69012174 | MS.gene019468:CDS | 50.0% |
| ! | AGGACAATCGTGGCCCTTTT+GGG | - | chr8.1:69012156-69012175 | MS.gene019468:CDS | 50.0% |
| ! | GGGTCAGGTAAGTTGAGTGT+CGG | + | chr8.1:69012059-69012078 | None:intergenic | 50.0% |
| ! | TCCGGGAGTATACTGACCAA+AGG | + | chr8.1:69012361-69012380 | None:intergenic | 50.0% |
| !! | ACCACGGATGACGGAGAAAA+AGG | + | chr8.1:69012012-69012031 | None:intergenic | 50.0% |
| !! | AGCTCTAAGTGCATGCTCCT+TGG | - | chr8.1:69012203-69012222 | MS.gene019468:CDS | 50.0% |
| !! | TTTAAAGGGCGCCTCACGAA+AGG | + | chr8.1:69012425-69012444 | None:intergenic | 50.0% |
| ACAGTCGGACTTGTGATCCC+TGG | - | chr8.1:69011937-69011956 | MS.gene019468:CDS | 55.0% | |
| ATCACCCAGACCACGGATGA+CGG | + | chr8.1:69012021-69012040 | None:intergenic | 55.0% | |
| CAGTATACTCCCGGACCATG+AGG | - | chr8.1:69012366-69012385 | MS.gene019468:CDS | 55.0% | |
| CAGTCGGACTTGTGATCCCT+GGG | - | chr8.1:69011938-69011957 | MS.gene019468:CDS | 55.0% | |
| GCGAATGAACCTCATGGTCC+GGG | + | chr8.1:69012378-69012397 | None:intergenic | 55.0% | |
| GTTCGTGTGCTCTTGTGCCA+CGG | - | chr8.1:69012265-69012284 | MS.gene019468:CDS | 55.0% | |
| TTCGTGTGCTCTTGTGCCAC+GGG | - | chr8.1:69012266-69012285 | MS.gene019468:CDS | 55.0% | |
| TTCTCCGTCATCCGTGGTCT+GGG | - | chr8.1:69012014-69012033 | MS.gene019468:CDS | 55.0% | |
| TTGTGCCACGGGTCATATGC+TGG | - | chr8.1:69012277-69012296 | MS.gene019468:CDS | 55.0% | |
| TTTCTCCGTCATCCGTGGTC+TGG | - | chr8.1:69012013-69012032 | MS.gene019468:CDS | 55.0% | |
| ! | GCCTTTTTCTCCGTCATCCG+TGG | - | chr8.1:69012008-69012027 | MS.gene019468:CDS | 55.0% |
| TGGCTCATACGTCTCGGGTC+AGG | + | chr8.1:69012074-69012093 | None:intergenic | 60.0% | |
| !! | GGTTGGGCGTCGGCCTATAC+CGG | - | chr8.1:69012455-69012474 | MS.gene019468:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 69010357 | 69012621 | 69010357 | ID=MS.gene019468 |
| chr8.1 | mRNA | 69010357 | 69012621 | 69010357 | ID=MS.gene019468.t1;Parent=MS.gene019468 |
| chr8.1 | exon | 69011422 | 69012621 | 69011422 | ID=MS.gene019468.t1.exon1;Parent=MS.gene019468.t1 |
| chr8.1 | CDS | 69011422 | 69012621 | 69011422 | ID=cds.MS.gene019468.t1;Parent=MS.gene019468.t1 |
| chr8.1 | exon | 69010615 | 69010749 | 69010615 | ID=MS.gene019468.t1.exon2;Parent=MS.gene019468.t1 |
| chr8.1 | CDS | 69010615 | 69010749 | 69010615 | ID=cds.MS.gene019468.t1;Parent=MS.gene019468.t1 |
| chr8.1 | exon | 69010357 | 69010407 | 69010357 | ID=MS.gene019468.t1.exon3;Parent=MS.gene019468.t1 |
| chr8.1 | CDS | 69010357 | 69010407 | 69010357 | ID=cds.MS.gene019468.t1;Parent=MS.gene019468.t1 |
| Gene Sequence |
| Protein sequence |
