Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061337.t1 | XP_013443753.1 | 95.3 | 444 | 21 | 0 | 1 | 444 | 1 | 444 | 4.40E-254 | 886.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061337.t1 | Q9SD53 | 26.3 | 441 | 269 | 11 | 19 | 433 | 38 | 448 | 6.8e-30 | 133.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061337.t1 | A0A072TLP8 | 95.3 | 444 | 21 | 0 | 1 | 444 | 1 | 444 | 3.2e-254 | 886.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene061337 | 0.828079 | 1.10E-54 | -1.69E-46 |
| MS.gene050100 | MS.gene061337 | 0.820619 | 6.23E-53 | -1.69E-46 |
| MS.gene050137 | MS.gene061337 | 0.815375 | 9.55E-52 | -1.69E-46 |
| MS.gene050298 | MS.gene061337 | 0.801251 | 9.84E-49 | -1.69E-46 |
| MS.gene050563 | MS.gene061337 | 0.82829 | 9.76E-55 | -1.69E-46 |
| MS.gene050584 | MS.gene061337 | 0.824247 | 8.95E-54 | -1.69E-46 |
| MS.gene050585 | MS.gene061337 | 0.829984 | 3.79E-55 | -1.69E-46 |
| MS.gene050587 | MS.gene061337 | 0.818013 | 2.45E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene061337 | 0.80386 | 2.85E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene061337 | 0.802198 | 6.28E-49 | -1.69E-46 |
| MS.gene05143 | MS.gene061337 | 0.822438 | 2.37E-53 | -1.69E-46 |
| MS.gene05157 | MS.gene061337 | 0.813875 | 2.05E-51 | -1.69E-46 |
| MS.gene051789 | MS.gene061337 | 0.839544 | 1.49E-57 | -1.69E-46 |
| MS.gene052142 | MS.gene061337 | 0.862962 | 3.49E-64 | -1.69E-46 |
| MS.gene052187 | MS.gene061337 | 0.834802 | 2.43E-56 | -1.69E-46 |
| MS.gene052456 | MS.gene061337 | 0.835151 | 1.98E-56 | -1.69E-46 |
| MS.gene052698 | MS.gene061337 | 0.862422 | 5.13E-64 | -1.69E-46 |
| MS.gene053074 | MS.gene061337 | 0.845831 | 3.18E-59 | -1.69E-46 |
| MS.gene053383 | MS.gene061337 | 0.876894 | 9.71E-69 | -1.69E-46 |
| MS.gene053563 | MS.gene061337 | 0.802061 | 6.71E-49 | -1.69E-46 |
| MS.gene05456 | MS.gene061337 | 0.856141 | 3.93E-62 | -1.69E-46 |
| MS.gene055359 | MS.gene061337 | 0.954798 | 1.31E-112 | -1.69E-46 |
| MS.gene055846 | MS.gene061337 | 0.809822 | 1.56E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene061337 | 0.823616 | 1.26E-53 | -1.69E-46 |
| MS.gene058918 | MS.gene061337 | 0.80888 | 2.49E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene061337 | 0.87326 | 1.69E-67 | -1.69E-46 |
| MS.gene059632 | MS.gene061337 | 0.866961 | 1.94E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061337 | MS.gene055359 | PPI |
| MS.gene91807 | MS.gene061337 | PPI |
| MS.gene022561 | MS.gene061337 | PPI |
| MS.gene022559 | MS.gene061337 | PPI |
| MS.gene019468 | MS.gene061337 | PPI |
| MS.gene061337 | MS.gene38854 | PPI |
| MS.gene061337 | MS.gene91809 | PPI |
| MS.gene91806 | MS.gene061337 | PPI |
| MS.gene061337 | MS.gene022561 | PPI |
| MS.gene055354 | MS.gene061337 | PPI |
| MS.gene061336 | MS.gene061337 | PPI |
| MS.gene061337 | MS.gene061334 | PPI |
| MS.gene061337 | MS.gene055358 | PPI |
| MS.gene061337 | MS.gene055357 | PPI |
| MS.gene061337 | MS.gene022560 | PPI |
| MS.gene91805 | MS.gene061337 | PPI |
| MS.gene061337 | MS.gene061335 | PPI |
| MS.gene055356 | MS.gene061337 | PPI |
| MS.gene061337 | MS.gene022562 | PPI |
| MS.gene061337 | MS.gene91808 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061337.t1 | MTR_8g005235 | 95.270 | 444 | 21 | 0 | 1 | 444 | 1 | 444 | 0.0 | 888 |
| MS.gene061337.t1 | MTR_8g005325 | 78.876 | 445 | 93 | 1 | 1 | 444 | 30 | 474 | 0.0 | 743 |
| MS.gene061337.t1 | MTR_8g006525 | 77.241 | 435 | 87 | 3 | 2 | 436 | 3 | 425 | 0.0 | 686 |
| MS.gene061337.t1 | MTR_0209s0060 | 76.552 | 435 | 86 | 4 | 3 | 436 | 5 | 424 | 0.0 | 675 |
| MS.gene061337.t1 | MTR_0209s0030 | 76.552 | 435 | 86 | 4 | 3 | 436 | 5 | 424 | 0.0 | 675 |
| MS.gene061337.t1 | MTR_8g005295 | 50.699 | 501 | 175 | 9 | 9 | 444 | 19 | 512 | 5.93e-163 | 469 |
| MS.gene061337.t1 | MTR_8g005285 | 51.753 | 485 | 180 | 9 | 9 | 444 | 19 | 498 | 1.08e-159 | 461 |
| MS.gene061337.t1 | MTR_8g005265 | 53.226 | 434 | 181 | 9 | 26 | 442 | 26 | 454 | 1.81e-151 | 438 |
| MS.gene061337.t1 | MTR_8g005225 | 50.905 | 442 | 201 | 6 | 12 | 442 | 22 | 458 | 1.52e-143 | 418 |
| MS.gene061337.t1 | MTR_4g112660 | 41.648 | 437 | 151 | 12 | 26 | 441 | 5 | 358 | 2.75e-94 | 288 |
| MS.gene061337.t1 | MTR_6g011050 | 33.721 | 430 | 240 | 13 | 3 | 426 | 4 | 394 | 5.39e-65 | 214 |
| MS.gene061337.t1 | MTR_6g009590 | 33.879 | 428 | 232 | 17 | 12 | 426 | 7 | 396 | 9.16e-65 | 214 |
| MS.gene061337.t1 | MTR_0024s0080 | 34.074 | 405 | 222 | 12 | 28 | 426 | 26 | 391 | 3.69e-64 | 212 |
| MS.gene061337.t1 | MTR_6g011060 | 33.184 | 446 | 244 | 14 | 4 | 432 | 2 | 410 | 4.21e-64 | 213 |
| MS.gene061337.t1 | MTR_3g107590 | 35.035 | 431 | 239 | 11 | 6 | 425 | 5 | 405 | 3.11e-62 | 208 |
| MS.gene061337.t1 | MTR_6g010920 | 32.701 | 422 | 238 | 13 | 21 | 434 | 19 | 402 | 7.66e-62 | 206 |
| MS.gene061337.t1 | MTR_6g010890 | 32.432 | 444 | 249 | 17 | 9 | 433 | 7 | 418 | 8.37e-62 | 206 |
| MS.gene061337.t1 | MTR_6g009610 | 34.266 | 429 | 229 | 17 | 9 | 426 | 10 | 396 | 1.88e-61 | 205 |
| MS.gene061337.t1 | MTR_3g079390 | 31.849 | 449 | 244 | 15 | 14 | 433 | 27 | 442 | 1.74e-59 | 201 |
| MS.gene061337.t1 | MTR_6g010810 | 33.021 | 427 | 238 | 14 | 17 | 433 | 12 | 400 | 6.50e-58 | 196 |
| MS.gene061337.t1 | MTR_6g009170 | 32.547 | 424 | 238 | 13 | 17 | 425 | 15 | 405 | 1.15e-57 | 196 |
| MS.gene061337.t1 | MTR_2g041180 | 29.561 | 433 | 266 | 15 | 11 | 434 | 39 | 441 | 9.58e-49 | 174 |
| MS.gene061337.t1 | MTR_2g036320 | 28.851 | 409 | 267 | 10 | 28 | 432 | 68 | 456 | 3.29e-46 | 167 |
| MS.gene061337.t1 | MTR_5g016570 | 27.692 | 455 | 250 | 12 | 12 | 417 | 79 | 503 | 3.57e-41 | 154 |
| MS.gene061337.t1 | MTR_6g010850 | 31.856 | 361 | 188 | 14 | 97 | 443 | 33 | 349 | 1.64e-39 | 146 |
| MS.gene061337.t1 | MTR_2g035640 | 30.769 | 377 | 216 | 10 | 64 | 432 | 1 | 340 | 1.98e-38 | 143 |
| MS.gene061337.t1 | MTR_5g086340 | 25.747 | 435 | 260 | 12 | 24 | 433 | 29 | 425 | 4.66e-34 | 133 |
| MS.gene061337.t1 | MTR_7g011980 | 34.842 | 221 | 115 | 6 | 222 | 434 | 136 | 335 | 5.03e-31 | 122 |
| MS.gene061337.t1 | MTR_7g011980 | 31.953 | 169 | 78 | 6 | 3 | 169 | 4 | 137 | 4.72e-15 | 76.6 |
| MS.gene061337.t1 | MTR_6g009580 | 35.071 | 211 | 110 | 5 | 221 | 425 | 30 | 219 | 7.61e-30 | 116 |
| MS.gene061337.t1 | MTR_8g042830 | 25.054 | 459 | 240 | 12 | 7 | 432 | 18 | 405 | 3.04e-28 | 116 |
| MS.gene061337.t1 | MTR_7g060260 | 26.303 | 422 | 266 | 13 | 9 | 417 | 14 | 403 | 4.25e-25 | 107 |
| MS.gene061337.t1 | MTR_7g060840 | 25.219 | 456 | 283 | 16 | 3 | 434 | 5 | 426 | 6.06e-25 | 106 |
| MS.gene061337.t1 | MTR_7g060310 | 23.506 | 502 | 284 | 13 | 3 | 432 | 6 | 479 | 3.13e-24 | 105 |
| MS.gene061337.t1 | MTR_7g060320 | 24.550 | 444 | 284 | 14 | 9 | 417 | 14 | 441 | 2.29e-22 | 99.8 |
| MS.gene061337.t1 | MTR_7g059540 | 23.810 | 483 | 285 | 14 | 3 | 432 | 6 | 458 | 1.74e-21 | 97.1 |
| MS.gene061337.t1 | MTR_6g009600 | 36.774 | 155 | 73 | 6 | 244 | 394 | 17 | 150 | 2.01e-21 | 90.9 |
| MS.gene061337.t1 | MTR_7g059540 | 23.471 | 507 | 267 | 16 | 3 | 432 | 5 | 467 | 5.11e-21 | 95.5 |
| MS.gene061337.t1 | MTR_7g446270 | 24.249 | 466 | 282 | 16 | 10 | 417 | 9 | 461 | 1.06e-20 | 94.7 |
| MS.gene061337.t1 | MTR_5g087580 | 29.032 | 186 | 111 | 2 | 249 | 433 | 42 | 207 | 1.14e-20 | 90.5 |
| MS.gene061337.t1 | MTR_7g060020 | 25.163 | 461 | 268 | 20 | 10 | 434 | 9 | 428 | 1.98e-20 | 93.6 |
| MS.gene061337.t1 | MTR_7g060115 | 26.010 | 396 | 233 | 15 | 41 | 398 | 41 | 414 | 2.17e-20 | 93.6 |
| MS.gene061337.t1 | MTR_8g042170 | 26.889 | 450 | 257 | 17 | 29 | 432 | 26 | 449 | 1.92e-19 | 90.9 |
| MS.gene061337.t1 | MTR_7g059510 | 24.454 | 458 | 249 | 15 | 12 | 434 | 20 | 415 | 4.91e-19 | 89.4 |
| MS.gene061337.t1 | MTR_5g086230 | 32.787 | 183 | 105 | 5 | 1 | 173 | 7 | 181 | 1.05e-18 | 84.3 |
| MS.gene061337.t1 | MTR_7g059810 | 25.185 | 405 | 250 | 11 | 41 | 417 | 42 | 421 | 2.00e-18 | 87.8 |
| MS.gene061337.t1 | MTR_7g059520 | 28.415 | 183 | 109 | 4 | 247 | 428 | 2 | 163 | 2.41e-18 | 82.8 |
| MS.gene061337.t1 | MTR_7g060220 | 25.126 | 398 | 246 | 12 | 44 | 417 | 44 | 413 | 3.67e-18 | 86.7 |
| MS.gene061337.t1 | MTR_8g037923 | 24.242 | 462 | 262 | 16 | 29 | 432 | 31 | 462 | 6.97e-18 | 86.3 |
| MS.gene061337.t1 | MTR_7g060080 | 28.846 | 208 | 125 | 4 | 233 | 435 | 1 | 190 | 1.18e-17 | 81.3 |
| MS.gene061337.t1 | MTR_5g086260 | 29.897 | 194 | 114 | 4 | 250 | 441 | 136 | 309 | 1.35e-17 | 83.6 |
| MS.gene061337.t1 | MTR_7g059525 | 26.455 | 189 | 122 | 2 | 245 | 432 | 103 | 275 | 4.73e-17 | 81.6 |
| MS.gene061337.t1 | MTR_8g037920 | 24.941 | 421 | 254 | 16 | 48 | 432 | 7 | 401 | 5.52e-17 | 82.8 |
| MS.gene061337.t1 | MTR_0182s0060 | 30.435 | 184 | 110 | 4 | 250 | 432 | 342 | 508 | 2.22e-16 | 81.6 |
| MS.gene061337.t1 | MTR_7g060160 | 26.178 | 382 | 200 | 15 | 41 | 397 | 41 | 365 | 2.23e-16 | 81.3 |
| MS.gene061337.t1 | MTR_7g059480 | 30.282 | 142 | 98 | 1 | 292 | 432 | 624 | 765 | 1.47e-15 | 79.7 |
| MS.gene061337.t1 | MTR_3g107600 | 27.830 | 212 | 101 | 6 | 221 | 426 | 406 | 571 | 1.58e-15 | 79.3 |
| MS.gene061337.t1 | MTR_4g009340 | 31.677 | 161 | 94 | 6 | 27 | 175 | 42 | 198 | 8.49e-14 | 73.9 |
| MS.gene061337.t1 | MTR_4g009340 | 31.667 | 120 | 81 | 1 | 300 | 418 | 409 | 528 | 1.15e-11 | 67.0 |
| MS.gene061337.t1 | MTR_4g009590 | 27.523 | 218 | 139 | 7 | 27 | 232 | 42 | 252 | 4.18e-13 | 71.6 |
| MS.gene061337.t1 | MTR_4g009590 | 32.692 | 104 | 69 | 1 | 300 | 402 | 409 | 512 | 9.13e-11 | 64.3 |
| MS.gene061337.t1 | MTR_4g009620 | 32.919 | 161 | 91 | 7 | 27 | 175 | 42 | 197 | 5.03e-13 | 71.2 |
| MS.gene061337.t1 | MTR_3g466740 | 25.258 | 388 | 228 | 15 | 29 | 379 | 32 | 394 | 7.22e-13 | 70.5 |
| MS.gene061337.t1 | MTR_7g017620 | 31.298 | 131 | 88 | 2 | 302 | 431 | 401 | 530 | 7.52e-13 | 70.9 |
| MS.gene061337.t1 | MTR_0067s0010 | 25.000 | 392 | 218 | 17 | 29 | 379 | 45 | 401 | 2.61e-12 | 68.9 |
| MS.gene061337.t1 | MTR_2g036310 | 31.818 | 132 | 88 | 1 | 303 | 432 | 19 | 150 | 5.10e-12 | 64.3 |
| MS.gene061337.t1 | MTR_6g010830 | 40.476 | 84 | 48 | 2 | 318 | 401 | 1 | 82 | 5.76e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061337.t1 | AT2G28580 | 34.943 | 435 | 220 | 13 | 27 | 433 | 41 | 440 | 2.80e-65 | 217 |
| MS.gene061337.t1 | AT2G28580 | 34.943 | 435 | 220 | 13 | 27 | 433 | 123 | 522 | 1.35e-64 | 217 |
| MS.gene061337.t1 | AT2G28580 | 34.862 | 436 | 221 | 13 | 27 | 434 | 109 | 509 | 1.36e-64 | 217 |
| MS.gene061337.t1 | AT2G44930 | 32.960 | 446 | 235 | 11 | 24 | 435 | 75 | 490 | 8.84e-64 | 214 |
| MS.gene061337.t1 | AT2G28580 | 34.752 | 423 | 220 | 13 | 27 | 433 | 109 | 491 | 1.43e-62 | 211 |
| MS.gene061337.t1 | AT2G28580 | 34.752 | 423 | 220 | 13 | 27 | 433 | 123 | 505 | 2.35e-62 | 211 |
| MS.gene061337.t1 | AT1G67150 | 29.356 | 419 | 253 | 7 | 28 | 433 | 7 | 395 | 3.64e-52 | 181 |
| MS.gene061337.t1 | AT1G67150 | 29.356 | 419 | 253 | 7 | 28 | 433 | 7 | 395 | 3.64e-52 | 181 |
| MS.gene061337.t1 | AT1G67150 | 29.078 | 423 | 253 | 7 | 28 | 433 | 7 | 399 | 1.16e-51 | 179 |
| MS.gene061337.t1 | AT3G50150 | 28.478 | 460 | 266 | 13 | 4 | 434 | 70 | 495 | 4.09e-49 | 175 |
| MS.gene061337.t1 | AT4G31980 | 29.177 | 401 | 247 | 11 | 26 | 422 | 292 | 659 | 2.71e-48 | 176 |
| MS.gene061337.t1 | AT3G50160 | 28.706 | 425 | 251 | 9 | 22 | 432 | 99 | 485 | 5.90e-47 | 169 |
| MS.gene061337.t1 | AT3G50170 | 27.233 | 459 | 278 | 9 | 4 | 433 | 93 | 524 | 1.16e-46 | 169 |
| MS.gene061337.t1 | AT3G50140 | 27.293 | 458 | 279 | 11 | 5 | 434 | 94 | 525 | 2.92e-46 | 168 |
| MS.gene061337.t1 | AT5G11290 | 26.714 | 423 | 277 | 9 | 14 | 432 | 18 | 411 | 7.73e-46 | 164 |
| MS.gene061337.t1 | AT1G67150 | 27.751 | 418 | 218 | 9 | 28 | 433 | 7 | 352 | 5.69e-45 | 160 |
| MS.gene061337.t1 | AT3G50120 | 28.478 | 460 | 265 | 14 | 12 | 432 | 81 | 515 | 2.41e-44 | 162 |
| MS.gene061337.t1 | AT2G36430 | 28.288 | 403 | 253 | 12 | 25 | 417 | 43 | 419 | 2.97e-44 | 160 |
| MS.gene061337.t1 | AT2G28580 | 35.000 | 360 | 171 | 13 | 27 | 358 | 123 | 447 | 4.61e-44 | 160 |
| MS.gene061337.t1 | AT1G65985 | 30.626 | 431 | 238 | 12 | 28 | 417 | 15 | 425 | 8.58e-44 | 159 |
| MS.gene061337.t1 | AT1G65985 | 30.626 | 431 | 238 | 12 | 28 | 417 | 15 | 425 | 8.58e-44 | 159 |
| MS.gene061337.t1 | AT3G47210 | 31.017 | 403 | 220 | 13 | 19 | 401 | 85 | 449 | 1.02e-43 | 160 |
| MS.gene061337.t1 | AT3G50180 | 28.125 | 448 | 270 | 12 | 4 | 432 | 158 | 572 | 4.97e-42 | 157 |
| MS.gene061337.t1 | AT3G50130 | 28.539 | 445 | 257 | 14 | 4 | 417 | 119 | 533 | 5.26e-41 | 154 |
| MS.gene061337.t1 | AT5G22540 | 27.603 | 413 | 241 | 12 | 27 | 417 | 31 | 407 | 9.53e-40 | 148 |
| MS.gene061337.t1 | AT3G47250 | 25.393 | 445 | 270 | 11 | 19 | 433 | 53 | 465 | 4.20e-38 | 144 |
| MS.gene061337.t1 | AT3G47250 | 25.393 | 445 | 270 | 11 | 19 | 433 | 53 | 465 | 4.20e-38 | 144 |
| MS.gene061337.t1 | AT3G47250 | 25.393 | 445 | 270 | 11 | 19 | 433 | 53 | 465 | 4.20e-38 | 144 |
| MS.gene061337.t1 | AT5G22550 | 26.395 | 466 | 252 | 14 | 27 | 434 | 44 | 476 | 1.74e-37 | 143 |
| MS.gene061337.t1 | AT3G47200 | 26.411 | 443 | 268 | 13 | 19 | 434 | 38 | 449 | 2.40e-37 | 142 |
| MS.gene061337.t1 | AT3G47200 | 26.411 | 443 | 268 | 13 | 19 | 434 | 38 | 449 | 2.40e-37 | 142 |
| MS.gene061337.t1 | AT3G50190 | 26.608 | 451 | 258 | 13 | 5 | 432 | 77 | 477 | 1.56e-35 | 137 |
| MS.gene061337.t1 | AT5G11290 | 25.664 | 339 | 223 | 7 | 96 | 432 | 31 | 342 | 4.06e-31 | 122 |
| MS.gene061337.t1 | AT3G44710 | 24.672 | 458 | 293 | 14 | 20 | 433 | 40 | 489 | 1.34e-28 | 118 |
| MS.gene061337.t1 | AT3G60470 | 34.034 | 238 | 108 | 7 | 21 | 227 | 26 | 245 | 1.13e-26 | 112 |
| MS.gene061337.t1 | AT3G60470 | 29.508 | 244 | 130 | 7 | 199 | 433 | 317 | 527 | 2.52e-23 | 102 |
| MS.gene061337.t1 | AT5G22550 | 24.190 | 463 | 217 | 16 | 27 | 434 | 44 | 427 | 4.59e-25 | 107 |
| MS.gene061337.t1 | AT3G50150 | 25.762 | 361 | 216 | 12 | 4 | 326 | 70 | 416 | 5.67e-24 | 104 |
| MS.gene061337.t1 | AT3G50170 | 25.333 | 300 | 190 | 7 | 4 | 276 | 93 | 385 | 2.76e-22 | 99.0 |
| MS.gene061337.t1 | AT3G50140 | 25.839 | 298 | 189 | 8 | 5 | 276 | 94 | 385 | 6.44e-22 | 97.8 |
| MS.gene061337.t1 | AT5G22560 | 27.753 | 227 | 139 | 5 | 27 | 236 | 47 | 265 | 8.97e-22 | 98.2 |
| MS.gene061337.t1 | AT5G22560 | 27.368 | 190 | 115 | 4 | 248 | 434 | 334 | 503 | 7.16e-12 | 67.8 |
| MS.gene061337.t1 | AT3G50190 | 25.430 | 291 | 167 | 9 | 5 | 276 | 77 | 336 | 6.42e-18 | 85.1 |
| MS.gene061337.t1 | AT3G50190 | 26.027 | 292 | 164 | 10 | 5 | 276 | 77 | 336 | 8.32e-18 | 85.1 |
| MS.gene061337.t1 | AT3G50190 | 26.027 | 292 | 164 | 10 | 5 | 276 | 77 | 336 | 8.32e-18 | 85.1 |
| MS.gene061337.t1 | AT3G02645 | 28.000 | 175 | 107 | 2 | 245 | 418 | 341 | 497 | 1.72e-16 | 82.0 |
| MS.gene061337.t1 | AT3G44700 | 32.258 | 124 | 78 | 5 | 14 | 131 | 34 | 157 | 5.42e-13 | 68.6 |
Find 56 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGCAGTTCTACCATAAT+TGG | 0.193723 | 8.2:-83398040 | MS.gene061337:CDS |
| ATAGATATTTCCATTACTTT+TGG | 0.255996 | 8.2:-83399086 | MS.gene061337:CDS |
| ATTGGTTGACATGATACTAT+TGG | 0.305573 | 8.2:-83398950 | MS.gene061337:CDS |
| TTTAACTTTCGTCGCGTTGT+TGG | 0.311790 | 8.2:-83397992 | MS.gene061337:CDS |
| TGATATCTGCGAATTTCTTT+TGG | 0.336636 | 8.2:+83398983 | None:intergenic |
| TAGAACAGCTATCCCAATTA+TGG | 0.339485 | 8.2:+83398027 | None:intergenic |
| TTGAGTTGGTTTCTTTGTTT+AGG | 0.358010 | 8.2:-83398451 | MS.gene061337:CDS |
| AGAAGCAATCGTGCACGAAT+TGG | 0.361763 | 8.2:-83398227 | MS.gene061337:CDS |
| GTCGTGTTATTACCAACTTA+TGG | 0.367785 | 8.2:-83398143 | MS.gene061337:CDS |
| ACAAAGAATGTTTGATGGTA+AGG | 0.389012 | 8.2:-83398564 | MS.gene061337:CDS |
| ACACCTCTACTCATATCTAT+TGG | 0.391628 | 8.2:-83399159 | MS.gene061337:CDS |
| CTGGGATGTTAATTATTTGT+TGG | 0.398663 | 8.2:+83399265 | None:intergenic |
| GAAAGTTTGAGGCAAAGAAA+TGG | 0.405649 | 8.2:-83398666 | MS.gene061337:CDS |
| AAAGTTTGAGGCAAAGAAAT+GGG | 0.406405 | 8.2:-83398665 | MS.gene061337:CDS |
| TTGCAAATGTAAGGCTCATC+AGG | 0.412545 | 8.2:+83398313 | None:intergenic |
| TAGTAACTCTGCGTCTTCTT+CGG | 0.437485 | 8.2:+83398258 | None:intergenic |
| CATTAAGATCTTCCATAAGT+TGG | 0.441137 | 8.2:+83398131 | None:intergenic |
| AGATATCAACAATGAACAAT+TGG | 0.443215 | 8.2:-83398968 | MS.gene061337:CDS |
| GAAACATAATTGCAAATGTA+AGG | 0.443461 | 8.2:+83398304 | None:intergenic |
| GAAGCAATCGTGCACGAATT+GGG | 0.450078 | 8.2:-83398226 | MS.gene061337:CDS |
| TTCACCTTCAAAAGAGTAGC+AGG | 0.450633 | 8.2:+83399195 | None:intergenic |
| CATCTTGTTACCCGCATCAC+AGG | 0.462910 | 8.2:-83398702 | MS.gene061337:CDS |
| ACTACAACAGTGAATGGAAA+AGG | 0.467565 | 8.2:-83398105 | MS.gene061337:CDS |
| ATTGGATTCTGTGTTCATCA+TGG | 0.468580 | 8.2:-83398932 | MS.gene061337:CDS |
| TCAGCTTCCGATTTATGTGT+TGG | 0.469424 | 8.2:-83398803 | MS.gene061337:CDS |
| ATGAACACTACAACAGTGAA+TGG | 0.475271 | 8.2:-83398111 | MS.gene061337:CDS |
| CTGAAGATTCCCTGTGATGC+GGG | 0.477114 | 8.2:+83398692 | None:intergenic |
| CAGTGAATGGAAAAGGGCTA+TGG | 0.481943 | 8.2:-83398098 | MS.gene061337:CDS |
| GAAGCAGTTCTACCATAATT+GGG | 0.495113 | 8.2:-83398039 | MS.gene061337:CDS |
| GACACTGCTCAAAAGCGATT+AGG | 0.499699 | 8.2:+83398341 | None:intergenic |
| GATACAACATTGAGGCCAAT+GGG | 0.502608 | 8.2:+83399227 | None:intergenic |
| CTTAAACTTTATGTCAAGCA+AGG | 0.508420 | 8.2:+83398486 | None:intergenic |
| CTACAACAGTGAATGGAAAA+GGG | 0.513538 | 8.2:-83398104 | MS.gene061337:CDS |
| GCAACAAAGTTGAATGAAGC+TGG | 0.514234 | 8.2:-83398538 | MS.gene061337:CDS |
| GGGCTATGGGTACATTAAAG+TGG | 0.515344 | 8.2:-83398084 | MS.gene061337:CDS |
| GCCTCAATGTTGTATCTACA+AGG | 0.517588 | 8.2:-83399220 | MS.gene061337:CDS |
| TAGGTTCCTCAAAACACATT+CGG | 0.523556 | 8.2:+83398360 | None:intergenic |
| GGCTATGGGTACATTAAAGT+GGG | 0.534765 | 8.2:-83398083 | MS.gene061337:CDS |
| CTAGGCGATTCCAAAAGTAA+TGG | 0.536662 | 8.2:+83399076 | None:intergenic |
| TCTGAAGATTCCCTGTGATG+CGG | 0.546993 | 8.2:+83398691 | None:intergenic |
| ATCTTCAGAAAGAAAGTTTG+AGG | 0.554166 | 8.2:-83398677 | MS.gene061337:CDS |
| AGATACAACATTGAGGCCAA+TGG | 0.562113 | 8.2:+83399226 | None:intergenic |
| AGCTGGTATAAGCTTTGAGA+AGG | 0.574187 | 8.2:-83398521 | MS.gene061337:CDS |
| GTTTGCACAGATTGTTAACA+AGG | 0.589492 | 8.2:+83398182 | None:intergenic |
| AGTGAATGGAAAAGGGCTAT+GGG | 0.589763 | 8.2:-83398097 | MS.gene061337:CDS |
| AAAATATAGAGCCTTCCCAT+TGG | 0.601300 | 8.2:-83399242 | MS.gene061337:CDS |
| ATCTTGTTACCCGCATCACA+GGG | 0.604095 | 8.2:-83398701 | MS.gene061337:CDS |
| CAACATTGAGGCCAATGGGA+AGG | 0.610470 | 8.2:+83399231 | None:intergenic |
| CAAGAAGCAATAAATCACGC+TGG | 0.619840 | 8.2:+83398830 | None:intergenic |
| ATGGTAGAACTGCTTCTCCA+AGG | 0.620610 | 8.2:+83398046 | None:intergenic |
| CCATAACAACAAAAGACTTG+AGG | 0.631898 | 8.2:-83399127 | MS.gene061337:CDS |
| CAAAGAAACCAACTCAACAA+AGG | 0.633809 | 8.2:+83398457 | None:intergenic |
| GGTCCAATAGATATGAGTAG+AGG | 0.668562 | 8.2:+83399156 | None:intergenic |
| GCTTTGAAGCACTTGCAACA+CGG | 0.686234 | 8.2:+83398421 | None:intergenic |
| GCACGAATTGGGAAGCAACG+AGG | 0.702046 | 8.2:-83398215 | MS.gene061337:CDS |
| ACCTTGTAGATACAACATTG+AGG | 0.707204 | 8.2:+83399219 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAAGAGAAAACAAAAAAT+GGG | - | chr8.2:83398368-83398387 | MS.gene061337:CDS | 20.0% |
| !!! | ACTGATTTTTTAGTTTCATA+GGG | + | chr8.2:83398674-83398693 | None:intergenic | 20.0% |
| !!! | ATAGATATTTCCATTACTTT+TGG | - | chr8.2:83398184-83398203 | MS.gene061337:CDS | 20.0% |
| !!! | TACTGATTTTTTAGTTTCAT+AGG | + | chr8.2:83398675-83398694 | None:intergenic | 20.0% |
| !!! | TTCTAAGAGAAAACAAAAAA+TGG | - | chr8.2:83398367-83398386 | MS.gene061337:CDS | 20.0% |
| ! | AGATATCAACAATGAACAAT+TGG | - | chr8.2:83398302-83398321 | MS.gene061337:CDS | 25.0% |
| ! | GAAACATAATTGCAAATGTA+AGG | + | chr8.2:83398969-83398988 | None:intergenic | 25.0% |
| !! | AGTTTTTCCAACACATAAAT+CGG | + | chr8.2:83398477-83398496 | None:intergenic | 25.0% |
| !! | TTTTCACAAAGAATGTTTGA+TGG | - | chr8.2:83398701-83398720 | MS.gene061337:CDS | 25.0% |
| !!! | TGAAATCACTTTTTTTGTCT+AGG | + | chr8.2:83398215-83398234 | None:intergenic | 25.0% |
| AGAAAAAACCTTTGTTGAGT+TGG | - | chr8.2:83398805-83398824 | MS.gene061337:CDS | 30.0% | |
| ATCTTCAGAAAGAAAGTTTG+AGG | - | chr8.2:83398593-83398612 | MS.gene061337:CDS | 30.0% | |
| ATTGGTTGACATGATACTAT+TGG | - | chr8.2:83398320-83398339 | MS.gene061337:CDS | 30.0% | |
| CATTAAGATCTTCCATAAGT+TGG | + | chr8.2:83399142-83399161 | None:intergenic | 30.0% | |
| CTGGGATGTTAATTATTTGT+TGG | + | chr8.2:83398008-83398027 | None:intergenic | 30.0% | |
| CTTAAACTTTATGTCAAGCA+AGG | + | chr8.2:83398787-83398806 | None:intergenic | 30.0% | |
| ! | AAAGTTTGAGGCAAAGAAAT+GGG | - | chr8.2:83398605-83398624 | MS.gene061337:CDS | 30.0% |
| ! | ACAAAGAATGTTTGATGGTA+AGG | - | chr8.2:83398706-83398725 | MS.gene061337:CDS | 30.0% |
| ! | TATTTTGCTCTTCTTGTTGA+AGG | + | chr8.2:83398254-83398273 | None:intergenic | 30.0% |
| ! | TGATATCTGCGAATTTCTTT+TGG | + | chr8.2:83398290-83398309 | None:intergenic | 30.0% |
| !! | CGAATTTCTTTTGGTAACAT+CGG | + | chr8.2:83398281-83398300 | None:intergenic | 30.0% |
| !! | TTGAGTTGGTTTCTTTGTTT+AGG | - | chr8.2:83398819-83398838 | MS.gene061337:CDS | 30.0% |
| AAAATATAGAGCCTTCCCAT+TGG | - | chr8.2:83398028-83398047 | MS.gene061337:CDS | 35.0% | |
| ACACCTCTACTCATATCTAT+TGG | - | chr8.2:83398111-83398130 | MS.gene061337:CDS | 35.0% | |
| ACCTTGTAGATACAACATTG+AGG | + | chr8.2:83398054-83398073 | None:intergenic | 35.0% | |
| ACTACAACAGTGAATGGAAA+AGG | - | chr8.2:83399165-83399184 | MS.gene061337:CDS | 35.0% | |
| AGAAGCAGTTCTACCATAAT+TGG | - | chr8.2:83399230-83399249 | MS.gene061337:CDS | 35.0% | |
| ATGAACACTACAACAGTGAA+TGG | - | chr8.2:83399159-83399178 | MS.gene061337:CDS | 35.0% | |
| ATTGGATTCTGTGTTCATCA+TGG | - | chr8.2:83398338-83398357 | MS.gene061337:CDS | 35.0% | |
| CAAAGAAACCAACTCAACAA+AGG | + | chr8.2:83398816-83398835 | None:intergenic | 35.0% | |
| CCATAACAACAAAAGACTTG+AGG | - | chr8.2:83398143-83398162 | MS.gene061337:CDS | 35.0% | |
| CTACAACAGTGAATGGAAAA+GGG | - | chr8.2:83399166-83399185 | MS.gene061337:CDS | 35.0% | |
| GAAGCAGTTCTACCATAATT+GGG | - | chr8.2:83399231-83399250 | MS.gene061337:CDS | 35.0% | |
| GTTTGCACAGATTGTTAACA+AGG | + | chr8.2:83399091-83399110 | None:intergenic | 35.0% | |
| TAGAACAGCTATCCCAATTA+TGG | + | chr8.2:83399246-83399265 | None:intergenic | 35.0% | |
| TAGGTTCCTCAAAACACATT+CGG | + | chr8.2:83398913-83398932 | None:intergenic | 35.0% | |
| ! | GAAAGTTTGAGGCAAAGAAA+TGG | - | chr8.2:83398604-83398623 | MS.gene061337:CDS | 35.0% |
| ! | GCAATGTCAAAAAGCACAAT+TGG | - | chr8.2:83398517-83398536 | MS.gene061337:CDS | 35.0% |
| ! | GTCGTGTTATTACCAACTTA+TGG | - | chr8.2:83399127-83399146 | MS.gene061337:CDS | 35.0% |
| !! | CGTGATCTACTTTTAACTGT+GGG | + | chr8.2:83398887-83398906 | None:intergenic | 35.0% |
| !! | TACTCTTTTGAAGGTGAAAG+AGG | - | chr8.2:83398080-83398099 | MS.gene061337:CDS | 35.0% |
| !! | TTGTGCTTTTTGACATTGCT+TGG | + | chr8.2:83398516-83398535 | None:intergenic | 35.0% |
| !!! | CAAGTCTTTTGTTGTTATGG+TGG | + | chr8.2:83398143-83398162 | None:intergenic | 35.0% |
| !!! | CCTCAAGTCTTTTGTTGTTA+TGG | + | chr8.2:83398146-83398165 | None:intergenic | 35.0% |
| !!! | CTTTTGTTGTTATGGTGGAT+AGG | + | chr8.2:83398138-83398157 | None:intergenic | 35.0% |
| AGATACAACATTGAGGCCAA+TGG | + | chr8.2:83398047-83398066 | None:intergenic | 40.0% | |
| AGTGAATGGAAAAGGGCTAT+GGG | - | chr8.2:83399173-83399192 | MS.gene061337:CDS | 40.0% | |
| CAAGAAGCAATAAATCACGC+TGG | + | chr8.2:83398443-83398462 | None:intergenic | 40.0% | |
| CTAGGCGATTCCAAAAGTAA+TGG | + | chr8.2:83398197-83398216 | None:intergenic | 40.0% | |
| GATACAACATTGAGGCCAAT+GGG | + | chr8.2:83398046-83398065 | None:intergenic | 40.0% | |
| GCAACAAAGTTGAATGAAGC+TGG | - | chr8.2:83398732-83398751 | MS.gene061337:CDS | 40.0% | |
| GCCTCAATGTTGTATCTACA+AGG | - | chr8.2:83398050-83398069 | MS.gene061337:CDS | 40.0% | |
| GGCTATGGGTACATTAAAGT+GGG | - | chr8.2:83399187-83399206 | MS.gene061337:CDS | 40.0% | |
| GGTCCAATAGATATGAGTAG+AGG | + | chr8.2:83398117-83398136 | None:intergenic | 40.0% | |
| TAGTAACTCTGCGTCTTCTT+CGG | + | chr8.2:83399015-83399034 | None:intergenic | 40.0% | |
| TCAGCTTCCGATTTATGTGT+TGG | - | chr8.2:83398467-83398486 | MS.gene061337:CDS | 40.0% | |
| TTCACCTTCAAAAGAGTAGC+AGG | + | chr8.2:83398078-83398097 | None:intergenic | 40.0% | |
| TTGCAAATGTAAGGCTCATC+AGG | + | chr8.2:83398960-83398979 | None:intergenic | 40.0% | |
| ! | GGGAAGGCTCTATATTTTCT+GGG | + | chr8.2:83398026-83398045 | None:intergenic | 40.0% |
| ! | TGGGAAGGCTCTATATTTTC+TGG | + | chr8.2:83398027-83398046 | None:intergenic | 40.0% |
| ! | TTTAACTTTCGTCGCGTTGT+TGG | - | chr8.2:83399278-83399297 | MS.gene061337:CDS | 40.0% |
| !! | AGCTGGTATAAGCTTTGAGA+AGG | - | chr8.2:83398749-83398768 | MS.gene061337:CDS | 40.0% |
| !! | GCGTGATCTACTTTTAACTG+TGG | + | chr8.2:83398888-83398907 | None:intergenic | 40.0% |
| !! | GGGTTTATTTTCGTGATCCT+TGG | - | chr8.2:83399207-83399226 | MS.gene061337:CDS | 40.0% |
| !! | TCTTTTGAAGGTGAAAGAGG+AGG | - | chr8.2:83398083-83398102 | MS.gene061337:CDS | 40.0% |
| AGAAGCAATCGTGCACGAAT+TGG | - | chr8.2:83399043-83399062 | MS.gene061337:CDS | 45.0% | |
| ATCTTGTTACCCGCATCACA+GGG | - | chr8.2:83398569-83398588 | MS.gene061337:CDS | 45.0% | |
| ATGGTAGAACTGCTTCTCCA+AGG | + | chr8.2:83399227-83399246 | None:intergenic | 45.0% | |
| CAGTGAATGGAAAAGGGCTA+TGG | - | chr8.2:83399172-83399191 | MS.gene061337:CDS | 45.0% | |
| GAAGCAATCGTGCACGAATT+GGG | - | chr8.2:83399044-83399063 | MS.gene061337:CDS | 45.0% | |
| GACACTGCTCAAAAGCGATT+AGG | + | chr8.2:83398932-83398951 | None:intergenic | 45.0% | |
| GGGCTATGGGTACATTAAAG+TGG | - | chr8.2:83399186-83399205 | MS.gene061337:CDS | 45.0% | |
| TCTGAAGATTCCCTGTGATG+CGG | + | chr8.2:83398582-83398601 | None:intergenic | 45.0% | |
| ! | GGTTCCTGCTACTCTTTTGA+AGG | - | chr8.2:83398071-83398090 | MS.gene061337:CDS | 45.0% |
| !! | GCTTTGAAGCACTTGCAACA+CGG | + | chr8.2:83398852-83398871 | None:intergenic | 45.0% |
| CAACATTGAGGCCAATGGGA+AGG | + | chr8.2:83398042-83398061 | None:intergenic | 50.0% | |
| CATCTTGTTACCCGCATCAC+AGG | - | chr8.2:83398568-83398587 | MS.gene061337:CDS | 50.0% | |
| CTGAAGATTCCCTGTGATGC+GGG | + | chr8.2:83398581-83398600 | None:intergenic | 50.0% | |
| ! | ACGCGACCGAATGTGTTTTG+AGG | - | chr8.2:83398904-83398923 | MS.gene061337:CDS | 50.0% |
| GCACGAATTGGGAAGCAACG+AGG | - | chr8.2:83399055-83399074 | MS.gene061337:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 83397979 | 83399313 | 83397979 | ID=MS.gene061337 |
| chr8.2 | mRNA | 83397979 | 83399313 | 83397979 | ID=MS.gene061337.t1;Parent=MS.gene061337 |
| chr8.2 | exon | 83397979 | 83399313 | 83397979 | ID=MS.gene061337.t1.exon1;Parent=MS.gene061337.t1 |
| chr8.2 | CDS | 83397979 | 83399313 | 83397979 | ID=cds.MS.gene061337.t1;Parent=MS.gene061337.t1 |
| Gene Sequence |
| Protein sequence |
