Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061335.t1 | XP_013443756.1 | 95 | 458 | 23 | 0 | 1 | 458 | 1 | 458 | 6.70E-258 | 899.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061335.t1 | Q9SD53 | 28.2 | 444 | 265 | 13 | 18 | 442 | 37 | 445 | 5.2e-33 | 143.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061335.t1 | A0A072TKP8 | 95.0 | 458 | 23 | 0 | 1 | 458 | 1 | 458 | 4.9e-258 | 899.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene061335 | 0.844548 | 7.06E-59 | -1.69E-46 |
| MS.gene049350 | MS.gene061335 | 0.845637 | 3.59E-59 | -1.69E-46 |
| MS.gene049711 | MS.gene061335 | 0.809949 | 1.47E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene061335 | 0.804036 | 2.62E-49 | -1.69E-46 |
| MS.gene050901 | MS.gene061335 | 0.835627 | 1.50E-56 | -1.69E-46 |
| MS.gene051018 | MS.gene061335 | 0.808102 | 3.65E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene061335 | 0.804985 | 1.66E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene061335 | 0.807156 | 5.80E-50 | -1.69E-46 |
| MS.gene051664 | MS.gene061335 | 0.818817 | 1.61E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene061335 | 0.821048 | 4.97E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene061335 | 0.822041 | 2.93E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene061335 | 0.819952 | 8.86E-53 | -1.69E-46 |
| MS.gene052000 | MS.gene061335 | 0.821554 | 3.80E-53 | -1.69E-46 |
| MS.gene052609 | MS.gene061335 | 0.819677 | 1.02E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene061335 | 0.835908 | 1.28E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene061335 | 0.809541 | 1.80E-50 | -1.69E-46 |
| MS.gene053536 | MS.gene061335 | 0.824557 | 7.57E-54 | -1.69E-46 |
| MS.gene053538 | MS.gene061335 | 0.823073 | 1.69E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene061335 | 0.801077 | 1.07E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene061335 | 0.82809 | 1.09E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene061335 | 0.827411 | 1.59E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene061335 | 0.815376 | 9.54E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene061335 | 0.805023 | 1.63E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene061335 | 0.805844 | 1.10E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene061335 | 0.850303 | 1.85E-60 | -1.69E-46 |
| MS.gene055764 | MS.gene061335 | 0.817694 | 2.89E-52 | -1.69E-46 |
| MS.gene056005 | MS.gene061335 | 0.828764 | 7.50E-55 | -1.69E-46 |
| MS.gene056050 | MS.gene061335 | 0.825874 | 3.69E-54 | -1.69E-46 |
| MS.gene056169 | MS.gene061335 | 0.816842 | 4.49E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene061335 | 0.81366 | 2.29E-51 | -1.69E-46 |
| MS.gene057132 | MS.gene061335 | 0.800851 | 1.19E-48 | -1.69E-46 |
| MS.gene057915 | MS.gene061335 | 0.803165 | 3.97E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene061335 | 0.802125 | 6.51E-49 | -1.69E-46 |
| MS.gene058668 | MS.gene061335 | 0.837212 | 5.94E-57 | -1.69E-46 |
| MS.gene05894 | MS.gene061335 | 0.845512 | 3.88E-59 | -1.69E-46 |
| MS.gene059424 | MS.gene061335 | 0.809731 | 1.64E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene061335 | 0.808386 | 3.18E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene061335 | 0.805286 | 1.44E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene061335 | 0.80952 | 1.82E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055356 | MS.gene061335 | PPI |
| MS.gene061335 | MS.gene055359 | PPI |
| MS.gene061335 | MS.gene91809 | PPI |
| MS.gene91807 | MS.gene061335 | PPI |
| MS.gene022561 | MS.gene061335 | PPI |
| MS.gene022559 | MS.gene061335 | PPI |
| MS.gene019468 | MS.gene061335 | PPI |
| MS.gene061335 | MS.gene061334 | PPI |
| MS.gene061335 | MS.gene055357 | PPI |
| MS.gene91806 | MS.gene061335 | PPI |
| MS.gene061335 | MS.gene022560 | PPI |
| MS.gene38854 | MS.gene061335 | PPI |
| MS.gene022560 | MS.gene061335 | PPI |
| MS.gene061337 | MS.gene061335 | PPI |
| MS.gene055354 | MS.gene061335 | PPI |
| MS.gene061336 | MS.gene061335 | PPI |
| MS.gene055358 | MS.gene061335 | PPI |
| MS.gene91805 | MS.gene061335 | PPI |
| MS.gene022562 | MS.gene061335 | PPI |
| MS.gene061335 | MS.gene91808 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061335.t1 | MTR_8g005265 | 94.978 | 458 | 23 | 0 | 1 | 458 | 1 | 458 | 0.0 | 885 |
| MS.gene061335.t1 | MTR_4g112660 | 73.016 | 441 | 37 | 5 | 22 | 458 | 1 | 363 | 0.0 | 617 |
| MS.gene061335.t1 | MTR_8g005225 | 60.566 | 459 | 162 | 10 | 4 | 455 | 13 | 459 | 0.0 | 531 |
| MS.gene061335.t1 | MTR_8g005325 | 53.215 | 451 | 192 | 6 | 8 | 454 | 37 | 472 | 6.67e-158 | 456 |
| MS.gene061335.t1 | MTR_8g005235 | 50.873 | 458 | 205 | 7 | 1 | 454 | 1 | 442 | 4.73e-157 | 452 |
| MS.gene061335.t1 | MTR_0209s0060 | 47.865 | 445 | 198 | 10 | 9 | 449 | 11 | 425 | 1.18e-132 | 389 |
| MS.gene061335.t1 | MTR_0209s0030 | 47.865 | 445 | 198 | 10 | 9 | 449 | 11 | 425 | 1.18e-132 | 389 |
| MS.gene061335.t1 | MTR_8g005295 | 43.922 | 510 | 206 | 12 | 9 | 455 | 19 | 511 | 7.53e-132 | 390 |
| MS.gene061335.t1 | MTR_8g006525 | 48.993 | 447 | 194 | 11 | 8 | 449 | 9 | 426 | 2.86e-131 | 386 |
| MS.gene061335.t1 | MTR_8g005285 | 45.233 | 493 | 210 | 13 | 9 | 455 | 19 | 497 | 4.91e-130 | 385 |
| MS.gene061335.t1 | MTR_0024s0080 | 36.386 | 415 | 211 | 15 | 28 | 438 | 26 | 391 | 1.30e-66 | 219 |
| MS.gene061335.t1 | MTR_6g010890 | 33.408 | 449 | 252 | 14 | 9 | 446 | 7 | 419 | 1.56e-64 | 214 |
| MS.gene061335.t1 | MTR_6g011060 | 33.710 | 442 | 237 | 13 | 17 | 446 | 15 | 412 | 4.17e-64 | 213 |
| MS.gene061335.t1 | MTR_6g010920 | 33.716 | 436 | 228 | 13 | 19 | 441 | 10 | 397 | 4.50e-64 | 213 |
| MS.gene061335.t1 | MTR_6g011050 | 33.095 | 420 | 228 | 10 | 25 | 438 | 22 | 394 | 3.34e-62 | 207 |
| MS.gene061335.t1 | MTR_6g009590 | 34.211 | 418 | 227 | 12 | 25 | 438 | 23 | 396 | 5.24e-62 | 207 |
| MS.gene061335.t1 | MTR_6g009610 | 33.573 | 417 | 231 | 9 | 25 | 438 | 23 | 396 | 2.77e-61 | 205 |
| MS.gene061335.t1 | MTR_3g107590 | 33.410 | 434 | 248 | 10 | 9 | 437 | 8 | 405 | 3.76e-59 | 200 |
| MS.gene061335.t1 | MTR_6g010810 | 32.644 | 435 | 237 | 14 | 20 | 446 | 15 | 401 | 3.47e-58 | 197 |
| MS.gene061335.t1 | MTR_3g079390 | 30.819 | 464 | 253 | 12 | 9 | 446 | 22 | 443 | 4.60e-58 | 198 |
| MS.gene061335.t1 | MTR_6g009170 | 34.426 | 427 | 232 | 15 | 20 | 437 | 18 | 405 | 7.58e-58 | 197 |
| MS.gene061335.t1 | MTR_2g036320 | 28.037 | 428 | 263 | 14 | 24 | 443 | 64 | 454 | 3.87e-42 | 156 |
| MS.gene061335.t1 | MTR_5g016570 | 30.277 | 469 | 250 | 15 | 7 | 433 | 74 | 507 | 5.75e-42 | 156 |
| MS.gene061335.t1 | MTR_2g035640 | 30.670 | 388 | 217 | 10 | 64 | 446 | 2 | 342 | 7.48e-42 | 152 |
| MS.gene061335.t1 | MTR_6g010850 | 32.418 | 364 | 197 | 11 | 98 | 457 | 33 | 351 | 6.05e-41 | 150 |
| MS.gene061335.t1 | MTR_2g041180 | 28.103 | 427 | 265 | 15 | 24 | 443 | 47 | 438 | 1.29e-39 | 149 |
| MS.gene061335.t1 | MTR_5g086340 | 27.918 | 437 | 258 | 12 | 23 | 444 | 28 | 422 | 1.39e-37 | 143 |
| MS.gene061335.t1 | MTR_7g011980 | 32.917 | 240 | 124 | 6 | 213 | 444 | 123 | 333 | 8.41e-30 | 119 |
| MS.gene061335.t1 | MTR_7g011980 | 36.667 | 150 | 65 | 3 | 20 | 169 | 18 | 137 | 1.17e-18 | 87.4 |
| MS.gene061335.t1 | MTR_6g009580 | 34.112 | 214 | 116 | 5 | 226 | 437 | 29 | 219 | 1.21e-28 | 113 |
| MS.gene061335.t1 | MTR_8g042830 | 25.835 | 449 | 240 | 13 | 14 | 444 | 30 | 403 | 1.13e-25 | 108 |
| MS.gene061335.t1 | MTR_5g087580 | 30.151 | 199 | 118 | 2 | 258 | 455 | 39 | 217 | 8.59e-21 | 91.3 |
| MS.gene061335.t1 | MTR_6g009600 | 36.364 | 132 | 65 | 2 | 261 | 392 | 22 | 134 | 4.71e-20 | 87.0 |
| MS.gene061335.t1 | MTR_7g060840 | 23.380 | 432 | 265 | 11 | 41 | 451 | 42 | 428 | 5.67e-20 | 92.4 |
| MS.gene061335.t1 | MTR_5g086260 | 28.378 | 222 | 132 | 4 | 241 | 455 | 110 | 311 | 8.22e-20 | 90.1 |
| MS.gene061335.t1 | MTR_7g060020 | 24.208 | 442 | 269 | 15 | 29 | 452 | 31 | 424 | 1.85e-19 | 90.9 |
| MS.gene061335.t1 | MTR_8g042170 | 25.508 | 443 | 272 | 16 | 29 | 438 | 26 | 443 | 1.37e-18 | 88.2 |
| MS.gene061335.t1 | MTR_7g059540 | 23.293 | 498 | 284 | 16 | 1 | 442 | 2 | 457 | 2.65e-17 | 84.3 |
| MS.gene061335.t1 | MTR_7g059510 | 23.400 | 453 | 249 | 16 | 29 | 452 | 31 | 414 | 1.34e-16 | 82.0 |
| MS.gene061335.t1 | MTR_7g060260 | 23.214 | 448 | 279 | 13 | 1 | 429 | 2 | 403 | 1.92e-16 | 81.6 |
| MS.gene061335.t1 | MTR_7g059810 | 24.408 | 422 | 248 | 14 | 41 | 431 | 42 | 423 | 2.46e-16 | 81.3 |
| MS.gene061335.t1 | MTR_7g060115 | 22.764 | 492 | 292 | 18 | 1 | 452 | 1 | 444 | 4.03e-16 | 80.9 |
| MS.gene061335.t1 | MTR_7g059540 | 23.379 | 509 | 280 | 18 | 1 | 442 | 1 | 466 | 4.05e-16 | 80.9 |
| MS.gene061335.t1 | MTR_7g060310 | 23.214 | 448 | 300 | 14 | 41 | 451 | 43 | 483 | 2.16e-15 | 78.6 |
| MS.gene061335.t1 | MTR_7g059520 | 29.091 | 165 | 100 | 3 | 262 | 425 | 5 | 153 | 4.44e-15 | 73.6 |
| MS.gene061335.t1 | MTR_5g086230 | 32.544 | 169 | 104 | 5 | 14 | 173 | 14 | 181 | 4.48e-15 | 74.3 |
| MS.gene061335.t1 | MTR_0182s0060 | 30.366 | 191 | 112 | 5 | 262 | 451 | 342 | 512 | 4.53e-15 | 77.8 |
| MS.gene061335.t1 | MTR_7g446270 | 23.305 | 472 | 256 | 16 | 29 | 432 | 31 | 464 | 1.18e-14 | 76.3 |
| MS.gene061335.t1 | MTR_7g059525 | 30.496 | 141 | 96 | 2 | 304 | 442 | 134 | 274 | 4.45e-14 | 72.8 |
| MS.gene061335.t1 | MTR_7g060220 | 23.380 | 432 | 259 | 15 | 29 | 431 | 27 | 415 | 4.67e-14 | 74.3 |
| MS.gene061335.t1 | MTR_7g060320 | 27.811 | 169 | 105 | 3 | 262 | 429 | 289 | 441 | 1.93e-13 | 72.4 |
| MS.gene061335.t1 | MTR_1g040690 | 25.000 | 412 | 251 | 14 | 25 | 411 | 25 | 403 | 2.07e-13 | 72.4 |
| MS.gene061335.t1 | MTR_7g060160 | 23.934 | 422 | 245 | 14 | 41 | 452 | 41 | 396 | 4.85e-13 | 70.9 |
| MS.gene061335.t1 | MTR_7g060080 | 26.776 | 183 | 116 | 3 | 262 | 442 | 16 | 182 | 5.35e-13 | 68.2 |
| MS.gene061335.t1 | MTR_3g107600 | 27.230 | 213 | 107 | 6 | 227 | 438 | 406 | 571 | 9.25e-13 | 70.9 |
| MS.gene061335.t1 | MTR_7g059480 | 27.465 | 142 | 102 | 1 | 304 | 444 | 624 | 765 | 1.49e-12 | 70.5 |
| MS.gene061335.t1 | MTR_3g466740 | 27.559 | 381 | 197 | 19 | 29 | 370 | 32 | 372 | 9.25e-12 | 67.4 |
| MS.gene061335.t1 | MTR_7g017620 | 25.668 | 187 | 118 | 3 | 258 | 443 | 364 | 530 | 1.30e-11 | 67.0 |
| MS.gene061335.t1 | MTR_2g036310 | 28.889 | 135 | 93 | 2 | 311 | 443 | 15 | 148 | 4.44e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061335.t1 | AT2G28580 | 30.455 | 440 | 251 | 11 | 25 | 446 | 39 | 441 | 1.98e-54 | 189 |
| MS.gene061335.t1 | AT2G28580 | 30.455 | 440 | 251 | 11 | 25 | 446 | 107 | 509 | 1.03e-53 | 188 |
| MS.gene061335.t1 | AT2G28580 | 30.455 | 440 | 251 | 11 | 25 | 446 | 121 | 523 | 1.87e-53 | 188 |
| MS.gene061335.t1 | AT4G31980 | 31.325 | 415 | 236 | 13 | 23 | 433 | 289 | 658 | 4.18e-52 | 186 |
| MS.gene061335.t1 | AT2G28580 | 29.698 | 431 | 249 | 10 | 25 | 446 | 107 | 492 | 8.66e-52 | 183 |
| MS.gene061335.t1 | AT2G28580 | 29.698 | 431 | 249 | 10 | 25 | 446 | 121 | 506 | 1.20e-51 | 182 |
| MS.gene061335.t1 | AT2G44930 | 29.047 | 451 | 250 | 13 | 25 | 447 | 82 | 490 | 7.35e-51 | 180 |
| MS.gene061335.t1 | AT2G36430 | 31.144 | 411 | 239 | 15 | 27 | 429 | 45 | 419 | 1.11e-50 | 178 |
| MS.gene061335.t1 | AT3G50120 | 27.434 | 452 | 269 | 11 | 20 | 444 | 96 | 515 | 2.16e-44 | 163 |
| MS.gene061335.t1 | AT1G67150 | 28.146 | 437 | 257 | 13 | 22 | 444 | 1 | 394 | 8.37e-44 | 159 |
| MS.gene061335.t1 | AT1G67150 | 28.146 | 437 | 257 | 13 | 22 | 444 | 1 | 394 | 8.37e-44 | 159 |
| MS.gene061335.t1 | AT3G50170 | 27.740 | 447 | 260 | 10 | 26 | 444 | 112 | 523 | 1.09e-43 | 161 |
| MS.gene061335.t1 | AT1G67150 | 27.891 | 441 | 257 | 13 | 22 | 444 | 1 | 398 | 4.07e-43 | 157 |
| MS.gene061335.t1 | AT5G11290 | 25.778 | 450 | 287 | 11 | 2 | 446 | 6 | 413 | 4.57e-43 | 157 |
| MS.gene061335.t1 | AT3G50150 | 26.059 | 472 | 289 | 12 | 12 | 456 | 68 | 506 | 6.15e-42 | 156 |
| MS.gene061335.t1 | AT3G50140 | 28.285 | 449 | 257 | 14 | 25 | 444 | 111 | 523 | 1.54e-41 | 155 |
| MS.gene061335.t1 | AT3G50160 | 26.742 | 445 | 265 | 12 | 25 | 456 | 102 | 498 | 5.90e-40 | 150 |
| MS.gene061335.t1 | AT3G47200 | 28.539 | 445 | 263 | 13 | 18 | 442 | 37 | 446 | 3.38e-39 | 147 |
| MS.gene061335.t1 | AT3G47200 | 28.539 | 445 | 263 | 13 | 18 | 442 | 37 | 446 | 3.38e-39 | 147 |
| MS.gene061335.t1 | AT3G50130 | 28.160 | 451 | 257 | 13 | 12 | 429 | 117 | 533 | 4.55e-39 | 149 |
| MS.gene061335.t1 | AT3G50180 | 28.767 | 438 | 251 | 15 | 26 | 444 | 177 | 572 | 5.81e-38 | 146 |
| MS.gene061335.t1 | AT3G47250 | 26.593 | 455 | 264 | 14 | 18 | 444 | 52 | 464 | 5.72e-37 | 142 |
| MS.gene061335.t1 | AT3G47250 | 26.593 | 455 | 264 | 14 | 18 | 444 | 52 | 464 | 5.72e-37 | 142 |
| MS.gene061335.t1 | AT3G47250 | 26.593 | 455 | 264 | 14 | 18 | 444 | 52 | 464 | 5.72e-37 | 142 |
| MS.gene061335.t1 | AT1G65985 | 27.938 | 451 | 236 | 14 | 28 | 429 | 15 | 425 | 7.04e-37 | 141 |
| MS.gene061335.t1 | AT1G65985 | 27.938 | 451 | 236 | 14 | 28 | 429 | 15 | 425 | 7.04e-37 | 141 |
| MS.gene061335.t1 | AT2G28580 | 30.769 | 364 | 197 | 11 | 25 | 370 | 121 | 447 | 6.01e-36 | 139 |
| MS.gene061335.t1 | AT3G47210 | 28.395 | 405 | 243 | 11 | 18 | 413 | 84 | 450 | 1.05e-34 | 135 |
| MS.gene061335.t1 | AT5G22550 | 25.536 | 466 | 283 | 13 | 27 | 450 | 44 | 487 | 6.53e-32 | 127 |
| MS.gene061335.t1 | AT3G50190 | 27.315 | 432 | 254 | 14 | 25 | 444 | 94 | 477 | 5.27e-31 | 125 |
| MS.gene061335.t1 | AT5G22540 | 26.024 | 415 | 261 | 11 | 25 | 429 | 29 | 407 | 1.26e-30 | 123 |
| MS.gene061335.t1 | AT5G11290 | 23.636 | 385 | 250 | 9 | 64 | 446 | 2 | 344 | 8.28e-28 | 114 |
| MS.gene061335.t1 | AT1G67150 | 24.485 | 437 | 230 | 15 | 22 | 444 | 1 | 351 | 1.25e-26 | 110 |
| MS.gene061335.t1 | AT5G22560 | 28.390 | 236 | 134 | 6 | 24 | 240 | 44 | 263 | 7.39e-25 | 107 |
| MS.gene061335.t1 | AT3G44710 | 32.068 | 237 | 127 | 10 | 15 | 238 | 34 | 249 | 2.10e-22 | 100 |
| MS.gene061335.t1 | AT3G50170 | 26.298 | 289 | 172 | 8 | 26 | 288 | 112 | 385 | 3.76e-20 | 92.8 |
| MS.gene061335.t1 | AT3G60470 | 31.522 | 184 | 105 | 3 | 264 | 446 | 365 | 528 | 8.11e-20 | 92.4 |
| MS.gene061335.t1 | AT3G60470 | 31.667 | 180 | 94 | 5 | 21 | 173 | 26 | 203 | 2.38e-16 | 82.0 |
| MS.gene061335.t1 | AT3G50140 | 27.835 | 291 | 167 | 10 | 25 | 288 | 111 | 385 | 1.27e-18 | 88.2 |
| MS.gene061335.t1 | AT3G50150 | 23.478 | 345 | 217 | 12 | 25 | 338 | 88 | 416 | 8.59e-18 | 85.9 |
| MS.gene061335.t1 | AT3G02645 | 27.374 | 179 | 111 | 2 | 254 | 431 | 338 | 498 | 1.63e-15 | 79.3 |
| MS.gene061335.t1 | AT3G50190 | 26.296 | 270 | 166 | 10 | 25 | 288 | 94 | 336 | 1.96e-13 | 72.0 |
| MS.gene061335.t1 | AT3G50190 | 26.296 | 270 | 166 | 10 | 25 | 288 | 94 | 336 | 1.96e-13 | 72.0 |
| MS.gene061335.t1 | AT3G50190 | 26.296 | 270 | 166 | 10 | 25 | 288 | 94 | 336 | 2.58e-13 | 71.6 |
Find 54 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATAGGCTCAATGATTTC+TGG | 0.230505 | 8.1:-87201714 | None:intergenic |
| TCAAATTCCTATGTTTGTTT+TGG | 0.230982 | 8.1:+87202157 | MS.gene061335:CDS |
| TAACTGGTGGAAACATTATA+TGG | 0.253364 | 8.1:+87202898 | MS.gene061335:CDS |
| GAATTGGCAACATTGGTTAA+TGG | 0.296171 | 8.1:+87202803 | MS.gene061335:CDS |
| AGTACATATTCTGGTCTAAA+AGG | 0.297271 | 8.1:-87202428 | None:intergenic |
| GCTGTTCTTAGTACATATTC+TGG | 0.309895 | 8.1:-87202437 | None:intergenic |
| CTGCATGACTTCCAAGTTCA+TGG | 0.314386 | 8.1:-87202781 | None:intergenic |
| GACATTGTTCGAACGCAATT+AGG | 0.332788 | 8.1:-87202655 | None:intergenic |
| TGTTTCTCTTGATTAAGTTC+TGG | 0.332904 | 8.1:-87201843 | None:intergenic |
| ATCCTGGCAAAGTTCTTGTT+TGG | 0.335574 | 8.1:-87201982 | None:intergenic |
| AAGCAACAGAATGTGTTCTT+AGG | 0.348136 | 8.1:+87202630 | MS.gene061335:CDS |
| ACACCAAAGTTTATCTCAAT+TGG | 0.352179 | 8.1:+87201801 | MS.gene061335:CDS |
| TGAATGAACATTATAATAAC+TGG | 0.371937 | 8.1:+87202882 | MS.gene061335:CDS |
| AAATAAACAAACTTTAGCTT+TGG | 0.384668 | 8.1:+87201905 | MS.gene061335:CDS |
| CCCTTTACTTGAATTTCTCT+TGG | 0.389233 | 8.1:-87202380 | None:intergenic |
| TTGTTATGGAAAGATCATTA+AGG | 0.389525 | 8.1:+87202856 | MS.gene061335:CDS |
| GAATGGTTGCAATAGCAATA+AGG | 0.400363 | 8.1:+87202214 | MS.gene061335:CDS |
| ACTTGGAAGTCATGCAGAAT+TGG | 0.403752 | 8.1:+87202787 | MS.gene061335:CDS |
| ATCTAATCAAATCAGTGAAA+TGG | 0.406351 | 8.1:-87202346 | None:intergenic |
| CCAAGAGAAATTCAAGTAAA+GGG | 0.431353 | 8.1:+87202380 | MS.gene061335:CDS |
| TCCAAGAGAAATTCAAGTAA+AGG | 0.438931 | 8.1:+87202379 | MS.gene061335:CDS |
| ACATGAAGATGTTGAGTTGT+TGG | 0.443426 | 8.1:+87202739 | MS.gene061335:CDS |
| GGACCAATTGAGATAAACTT+TGG | 0.444411 | 8.1:-87201804 | None:intergenic |
| ATTTCATGTTTACAACATCA+TGG | 0.446527 | 8.1:+87202093 | MS.gene061335:CDS |
| AGAGTTAGTTCAACTGTTGT+TGG | 0.459714 | 8.1:+87202956 | MS.gene061335:CDS |
| TAAGAACACATTCTGTTGCT+TGG | 0.460229 | 8.1:-87202628 | None:intergenic |
| TTCCAAACAAGAACTTTGCC+AGG | 0.463658 | 8.1:+87201980 | MS.gene061335:CDS |
| AACATTATATGGGAATGTTA+AGG | 0.469604 | 8.1:+87202909 | MS.gene061335:CDS |
| ATTAGTTTCGAGAAAGTTCA+AGG | 0.472626 | 8.1:+87202482 | MS.gene061335:CDS |
| GTGGTGACATCAAATTGTTA+TGG | 0.484272 | 8.1:+87202842 | MS.gene061335:CDS |
| GAAATCATTAGCCATGAACT+TGG | 0.500879 | 8.1:+87202770 | MS.gene061335:CDS |
| GCTACAAAGTTGAGTGAAGC+AGG | 0.504844 | 8.1:+87202458 | MS.gene061335:CDS |
| CATAGTTGCATATGAAAGGT+TGG | 0.506971 | 8.1:-87202688 | None:intergenic |
| TCTGGATTCTGACTATGAAA+AGG | 0.511649 | 8.1:-87201825 | None:intergenic |
| AACTGGTGGAAACATTATAT+GGG | 0.515685 | 8.1:+87202899 | MS.gene061335:CDS |
| GATTTACAAAATGACACAAA+GGG | 0.517121 | 8.1:+87202115 | MS.gene061335:CDS |
| CTTGGTCTACATTCAAATGC+GGG | 0.526420 | 8.1:-87202610 | None:intergenic |
| AATTCCTCCAAAACAAACAT+AGG | 0.529945 | 8.1:-87202164 | None:intergenic |
| CTTCATTCAACTTCAAGAGA+TGG | 0.534037 | 8.1:-87201770 | None:intergenic |
| TCATGCAGAATTGGCAACAT+TGG | 0.537428 | 8.1:+87202796 | MS.gene061335:CDS |
| GTGTTATTAGCTGAAAAGAA+TGG | 0.538677 | 8.1:+87202197 | MS.gene061335:CDS |
| GAAACATAGTTGCATATGAA+AGG | 0.547120 | 8.1:-87202692 | None:intergenic |
| GATTCGACAAATTTAAAACA+TGG | 0.566903 | 8.1:-87202575 | None:intergenic |
| TTCAACTTCAAGAGATGGTG+AGG | 0.578382 | 8.1:-87201765 | None:intergenic |
| AAATCAGTGAAATGGTTGCA+AGG | 0.586489 | 8.1:-87202338 | None:intergenic |
| ACAGTTGAACTAACTCTCCA+AGG | 0.590172 | 8.1:-87202950 | None:intergenic |
| ATCAAGAGAAACAGAAACAA+AGG | 0.600906 | 8.1:+87201853 | MS.gene061335:CDS |
| GCTTGGTCTACATTCAAATG+CGG | 0.614751 | 8.1:-87202611 | None:intergenic |
| ATGAACATTATAATAACTGG+TGG | 0.615438 | 8.1:+87202885 | MS.gene061335:CDS |
| GGATTTACAAAATGACACAA+AGG | 0.620547 | 8.1:+87202114 | MS.gene061335:CDS |
| TGGTCTTTGCAAATATGTTG+TGG | 0.629307 | 8.1:+87202823 | MS.gene061335:CDS |
| TTGATTATGTGCTGAATCTG+TGG | 0.644996 | 8.1:-87201687 | None:intergenic |
| TTATATGGGAATGTTAAGGT+CGG | 0.661560 | 8.1:+87202913 | MS.gene061335:CDS |
| TTTGGAGGAATTACACAGAG+GGG | 0.718017 | 8.1:+87202175 | MS.gene061335:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTAACAAGTCAAAAAT+TGG | + | chr8.1:87202295-87202314 | MS.gene061335:CDS | 20.0% |
| !! | TGAATGAACATTATAATAAC+TGG | + | chr8.1:87202882-87202901 | MS.gene061335:CDS | 20.0% |
| !!! | AAATAAACAAACTTTAGCTT+TGG | + | chr8.1:87201905-87201924 | MS.gene061335:CDS | 20.0% |
| ! | AACATTATATGGGAATGTTA+AGG | + | chr8.1:87202909-87202928 | MS.gene061335:CDS | 25.0% |
| ! | ATCTAATCAAATCAGTGAAA+TGG | - | chr8.1:87202349-87202368 | None:intergenic | 25.0% |
| ! | ATGAACATTATAATAACTGG+TGG | + | chr8.1:87202885-87202904 | MS.gene061335:CDS | 25.0% |
| ! | ATTTCATGTTTACAACATCA+TGG | + | chr8.1:87202093-87202112 | MS.gene061335:CDS | 25.0% |
| ! | GATTTACAAAATGACACAAA+GGG | + | chr8.1:87202115-87202134 | MS.gene061335:CDS | 25.0% |
| ! | TGAAAAATGTTGCATTTACA+AGG | + | chr8.1:87201740-87201759 | MS.gene061335:CDS | 25.0% |
| ! | TTGTTATGGAAAGATCATTA+AGG | + | chr8.1:87202856-87202875 | MS.gene061335:CDS | 25.0% |
| !! | CAACATTTTTCATGTAACAT+AGG | - | chr8.1:87201732-87201751 | None:intergenic | 25.0% |
| !! | GATTCGACAAATTTAAAACA+TGG | - | chr8.1:87202578-87202597 | None:intergenic | 25.0% |
| !! | GTCAATTTTCTTAGAGTTAT+TGG | + | chr8.1:87203004-87203023 | MS.gene061335:CDS | 25.0% |
| !! | TCAAATTCCTATGTTTGTTT+TGG | + | chr8.1:87202157-87202176 | MS.gene061335:CDS | 25.0% |
| !!! | TTTTGACTTGTTAACTTTTG+AGG | - | chr8.1:87202293-87202312 | None:intergenic | 25.0% |
| AACTGGTGGAAACATTATAT+GGG | + | chr8.1:87202899-87202918 | MS.gene061335:CDS | 30.0% | |
| AATTCCTCCAAAACAAACAT+AGG | - | chr8.1:87202167-87202186 | None:intergenic | 30.0% | |
| ACACCAAAGTTTATCTCAAT+TGG | + | chr8.1:87201801-87201820 | MS.gene061335:CDS | 30.0% | |
| AGTACATATTCTGGTCTAAA+AGG | - | chr8.1:87202431-87202450 | None:intergenic | 30.0% | |
| ATCAAGAGAAACAGAAACAA+AGG | + | chr8.1:87201853-87201872 | MS.gene061335:CDS | 30.0% | |
| CCAAGAGAAATTCAAGTAAA+GGG | + | chr8.1:87202380-87202399 | MS.gene061335:CDS | 30.0% | |
| GAAACATAGTTGCATATGAA+AGG | - | chr8.1:87202695-87202714 | None:intergenic | 30.0% | |
| GGATTTACAAAATGACACAA+AGG | + | chr8.1:87202114-87202133 | MS.gene061335:CDS | 30.0% | |
| TAACTGGTGGAAACATTATA+TGG | + | chr8.1:87202898-87202917 | MS.gene061335:CDS | 30.0% | |
| TCCAAGAGAAATTCAAGTAA+AGG | + | chr8.1:87202379-87202398 | MS.gene061335:CDS | 30.0% | |
| TGTTTCTCTTGATTAAGTTC+TGG | - | chr8.1:87201846-87201865 | None:intergenic | 30.0% | |
| TTATATGGGAATGTTAAGGT+CGG | + | chr8.1:87202913-87202932 | MS.gene061335:CDS | 30.0% | |
| ! | ATTAGTTTCGAGAAAGTTCA+AGG | + | chr8.1:87202482-87202501 | MS.gene061335:CDS | 30.0% |
| ! | GTGTTATTAGCTGAAAAGAA+TGG | + | chr8.1:87202197-87202216 | MS.gene061335:CDS | 30.0% |
| ! | GTTAGACTCAGTTTTCATAA+TGG | + | chr8.1:87202028-87202047 | MS.gene061335:CDS | 30.0% |
| !! | AAAGGTGTGAAACTTTTTGA+TGG | - | chr8.1:87202413-87202432 | None:intergenic | 30.0% |
| !!! | AAAGGTACTTTCATGCTTTT+TGG | + | chr8.1:87201871-87201890 | MS.gene061335:CDS | 30.0% |
| !!! | AATTCCTATGTTTGTTTTGG+AGG | + | chr8.1:87202160-87202179 | MS.gene061335:CDS | 30.0% |
| AAATCAGTGAAATGGTTGCA+AGG | - | chr8.1:87202341-87202360 | None:intergenic | 35.0% | |
| AACATAGGCTCAATGATTTC+TGG | - | chr8.1:87201717-87201736 | None:intergenic | 35.0% | |
| AAGCAACAGAATGTGTTCTT+AGG | + | chr8.1:87202630-87202649 | MS.gene061335:CDS | 35.0% | |
| AGAGTTAGTTCAACTGTTGT+TGG | + | chr8.1:87202956-87202975 | MS.gene061335:CDS | 35.0% | |
| CACAAAAACCAGCTCAAAAT+CGG | - | chr8.1:87202542-87202561 | None:intergenic | 35.0% | |
| CATAGTTGCATATGAAAGGT+TGG | - | chr8.1:87202691-87202710 | None:intergenic | 35.0% | |
| CCCTTTACTTGAATTTCTCT+TGG | - | chr8.1:87202383-87202402 | None:intergenic | 35.0% | |
| CTTCATTCAACTTCAAGAGA+TGG | - | chr8.1:87201773-87201792 | None:intergenic | 35.0% | |
| GAAATCATTAGCCATGAACT+TGG | + | chr8.1:87202770-87202789 | MS.gene061335:CDS | 35.0% | |
| GAATGGTTGCAATAGCAATA+AGG | + | chr8.1:87202214-87202233 | MS.gene061335:CDS | 35.0% | |
| GCTGTTCTTAGTACATATTC+TGG | - | chr8.1:87202440-87202459 | None:intergenic | 35.0% | |
| GGACCAATTGAGATAAACTT+TGG | - | chr8.1:87201807-87201826 | None:intergenic | 35.0% | |
| GTGGTGACATCAAATTGTTA+TGG | + | chr8.1:87202842-87202861 | MS.gene061335:CDS | 35.0% | |
| TAAGAACACATTCTGTTGCT+TGG | - | chr8.1:87202631-87202650 | None:intergenic | 35.0% | |
| TCTGGATTCTGACTATGAAA+AGG | - | chr8.1:87201828-87201847 | None:intergenic | 35.0% | |
| TGGTCTTTGCAAATATGTTG+TGG | + | chr8.1:87202823-87202842 | MS.gene061335:CDS | 35.0% | |
| TTGATTATGTGCTGAATCTG+TGG | - | chr8.1:87201690-87201709 | None:intergenic | 35.0% | |
| TTTCCAAAAACTTCTCATCC+TGG | - | chr8.1:87202001-87202020 | None:intergenic | 35.0% | |
| ! | ACATGAAGATGTTGAGTTGT+TGG | + | chr8.1:87202739-87202758 | MS.gene061335:CDS | 35.0% |
| ! | GAATTGGCAACATTGGTTAA+TGG | + | chr8.1:87202803-87202822 | MS.gene061335:CDS | 35.0% |
| !! | TTTTGGAGGAATTACACAGA+GGG | + | chr8.1:87202174-87202193 | MS.gene061335:CDS | 35.0% |
| ACAGTTGAACTAACTCTCCA+AGG | - | chr8.1:87202953-87202972 | None:intergenic | 40.0% | |
| ACTTGGAAGTCATGCAGAAT+TGG | + | chr8.1:87202787-87202806 | MS.gene061335:CDS | 40.0% | |
| ATCCTGGCAAAGTTCTTGTT+TGG | - | chr8.1:87201985-87202004 | None:intergenic | 40.0% | |
| CTTGGTCTACATTCAAATGC+GGG | - | chr8.1:87202613-87202632 | None:intergenic | 40.0% | |
| GACATTGTTCGAACGCAATT+AGG | - | chr8.1:87202658-87202677 | None:intergenic | 40.0% | |
| GCTTGGTCTACATTCAAATG+CGG | - | chr8.1:87202614-87202633 | None:intergenic | 40.0% | |
| TCATGCAGAATTGGCAACAT+TGG | + | chr8.1:87202796-87202815 | MS.gene061335:CDS | 40.0% | |
| TTCAACTTCAAGAGATGGTG+AGG | - | chr8.1:87201768-87201787 | None:intergenic | 40.0% | |
| TTCCAAACAAGAACTTTGCC+AGG | + | chr8.1:87201980-87201999 | MS.gene061335:CDS | 40.0% | |
| TTTGGAGGAATTACACAGAG+GGG | + | chr8.1:87202175-87202194 | MS.gene061335:CDS | 40.0% | |
| ! | TTGCCAGGATGAGAAGTTTT+TGG | + | chr8.1:87201995-87202014 | MS.gene061335:CDS | 40.0% |
| !!! | GTTTTGGAGGAATTACACAG+AGG | + | chr8.1:87202173-87202192 | MS.gene061335:CDS | 40.0% |
| !!! | TTGAGCTGGTTTTTGTGCTT+AGG | + | chr8.1:87202545-87202564 | MS.gene061335:CDS | 40.0% |
| CTGCATGACTTCCAAGTTCA+TGG | - | chr8.1:87202784-87202803 | None:intergenic | 45.0% | |
| GCTACAAAGTTGAGTGAAGC+AGG | + | chr8.1:87202458-87202477 | MS.gene061335:CDS | 45.0% | |
| ! | CGGTGTATTTTCGTGATCCT+TGG | + | chr8.1:87202933-87202952 | MS.gene061335:CDS | 45.0% |
| !!! | AGAAGACGCCGATTTTGAGC+TGG | + | chr8.1:87202531-87202550 | MS.gene061335:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 87201669 | 87203045 | 87201669 | ID=MS.gene061335 |
| chr8.1 | mRNA | 87201669 | 87203045 | 87201669 | ID=MS.gene061335.t1;Parent=MS.gene061335 |
| chr8.1 | exon | 87201669 | 87203045 | 87201669 | ID=MS.gene061335.t1.exon1;Parent=MS.gene061335.t1 |
| chr8.1 | CDS | 87201669 | 87203045 | 87201669 | ID=cds.MS.gene061335.t1;Parent=MS.gene061335.t1 |
| Gene Sequence |
| Protein sequence |
