Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022559.t1 | XP_013443758.1 | 92.8 | 515 | 34 | 1 | 1 | 515 | 1 | 512 | 1.90E-272 | 948 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022559.t1 | Q9SD53 | 24.4 | 483 | 291 | 10 | 25 | 503 | 35 | 447 | 2.7e-22 | 108.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022559.t1 | A0A072TLQ6 | 92.8 | 515 | 34 | 1 | 1 | 515 | 1 | 512 | 1.3e-272 | 948.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022559 | MS.gene91808 | PPI |
| MS.gene022559 | MS.gene38854 | PPI |
| MS.gene022559 | MS.gene055354 | PPI |
| MS.gene022559 | MS.gene91805 | PPI |
| MS.gene022559 | MS.gene061337 | PPI |
| MS.gene022559 | MS.gene061334 | PPI |
| MS.gene022559 | MS.gene055358 | PPI |
| MS.gene022559 | MS.gene022560 | PPI |
| MS.gene022559 | MS.gene91809 | PPI |
| MS.gene022559 | MS.gene022561 | PPI |
| MS.gene022559 | MS.gene061335 | PPI |
| MS.gene022559 | MS.gene91806 | PPI |
| MS.gene022559 | MS.gene055356 | PPI |
| MS.gene022559 | MS.gene055357 | PPI |
| MS.gene91807 | MS.gene022559 | PPI |
| MS.gene022559 | MS.gene061336 | PPI |
| MS.gene022559 | MS.gene055359 | PPI |
| MS.gene022559 | MS.gene019468 | PPI |
| MS.gene022559 | MS.gene022562 | PPI |
| MS.gene061336 | MS.gene022559 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022559.t1 | MTR_8g005295 | 92.816 | 515 | 34 | 1 | 1 | 515 | 1 | 512 | 0.0 | 984 |
| MS.gene022559.t1 | MTR_8g005285 | 88.155 | 515 | 44 | 1 | 1 | 515 | 1 | 498 | 0.0 | 929 |
| MS.gene022559.t1 | MTR_8g005325 | 50.398 | 502 | 179 | 9 | 19 | 515 | 38 | 474 | 3.98e-162 | 469 |
| MS.gene022559.t1 | MTR_8g005235 | 49.603 | 504 | 179 | 11 | 19 | 515 | 9 | 444 | 4.01e-159 | 460 |
| MS.gene022559.t1 | MTR_0209s0060 | 46.263 | 495 | 181 | 13 | 19 | 508 | 11 | 425 | 3.57e-134 | 395 |
| MS.gene022559.t1 | MTR_0209s0030 | 46.263 | 495 | 181 | 13 | 19 | 508 | 11 | 425 | 3.57e-134 | 395 |
| MS.gene022559.t1 | MTR_8g006525 | 46.245 | 506 | 188 | 13 | 12 | 512 | 4 | 430 | 1.14e-132 | 392 |
| MS.gene022559.t1 | MTR_8g005265 | 45.436 | 493 | 191 | 14 | 36 | 514 | 27 | 455 | 5.79e-128 | 381 |
| MS.gene022559.t1 | MTR_8g005225 | 42.748 | 524 | 223 | 12 | 1 | 513 | 1 | 458 | 6.00e-123 | 368 |
| MS.gene022559.t1 | MTR_3g079390 | 33.468 | 496 | 247 | 16 | 17 | 503 | 20 | 441 | 2.37e-64 | 216 |
| MS.gene022559.t1 | MTR_6g010920 | 31.557 | 488 | 220 | 17 | 32 | 508 | 21 | 405 | 1.13e-61 | 207 |
| MS.gene022559.t1 | MTR_6g009590 | 30.346 | 491 | 226 | 16 | 22 | 497 | 7 | 396 | 5.65e-60 | 203 |
| MS.gene022559.t1 | MTR_6g011050 | 30.297 | 472 | 218 | 14 | 36 | 497 | 24 | 394 | 5.29e-58 | 198 |
| MS.gene022559.t1 | MTR_4g112660 | 38.824 | 340 | 118 | 9 | 188 | 510 | 90 | 356 | 2.05e-57 | 195 |
| MS.gene022559.t1 | MTR_4g112660 | 46.429 | 84 | 41 | 3 | 36 | 118 | 6 | 86 | 6.06e-15 | 76.6 |
| MS.gene022559.t1 | MTR_6g009610 | 30.947 | 475 | 226 | 14 | 29 | 497 | 18 | 396 | 8.77e-57 | 195 |
| MS.gene022559.t1 | MTR_6g011060 | 29.555 | 494 | 236 | 15 | 25 | 503 | 14 | 410 | 3.41e-56 | 194 |
| MS.gene022559.t1 | MTR_0024s0080 | 30.538 | 465 | 218 | 14 | 38 | 497 | 27 | 391 | 2.43e-52 | 183 |
| MS.gene022559.t1 | MTR_6g010890 | 29.492 | 512 | 240 | 19 | 19 | 508 | 10 | 422 | 1.10e-51 | 182 |
| MS.gene022559.t1 | MTR_3g107590 | 30.526 | 475 | 225 | 14 | 34 | 496 | 24 | 405 | 1.80e-51 | 181 |
| MS.gene022559.t1 | MTR_6g010810 | 29.424 | 486 | 229 | 16 | 35 | 508 | 21 | 404 | 3.79e-49 | 174 |
| MS.gene022559.t1 | MTR_6g009170 | 29.577 | 497 | 230 | 17 | 22 | 496 | 7 | 405 | 1.53e-48 | 173 |
| MS.gene022559.t1 | MTR_2g036320 | 27.557 | 479 | 263 | 14 | 29 | 505 | 61 | 457 | 8.41e-44 | 162 |
| MS.gene022559.t1 | MTR_2g041180 | 27.331 | 472 | 261 | 13 | 36 | 505 | 50 | 441 | 2.91e-42 | 157 |
| MS.gene022559.t1 | MTR_2g035640 | 27.189 | 434 | 219 | 9 | 73 | 503 | 1 | 340 | 4.85e-38 | 143 |
| MS.gene022559.t1 | MTR_5g086340 | 25.684 | 475 | 272 | 10 | 37 | 508 | 33 | 429 | 3.62e-34 | 134 |
| MS.gene022559.t1 | MTR_5g016570 | 27.311 | 476 | 258 | 14 | 32 | 488 | 97 | 503 | 2.88e-32 | 130 |
| MS.gene022559.t1 | MTR_6g010850 | 28.889 | 405 | 181 | 14 | 109 | 503 | 33 | 340 | 7.46e-32 | 126 |
| MS.gene022559.t1 | MTR_7g011980 | 34.211 | 190 | 101 | 3 | 316 | 503 | 166 | 333 | 1.40e-25 | 108 |
| MS.gene022559.t1 | MTR_7g011980 | 31.579 | 171 | 66 | 4 | 29 | 199 | 18 | 137 | 6.37e-17 | 82.8 |
| MS.gene022559.t1 | MTR_7g060310 | 24.025 | 487 | 295 | 14 | 46 | 503 | 39 | 479 | 1.66e-23 | 103 |
| MS.gene022559.t1 | MTR_7g059540 | 22.397 | 509 | 273 | 15 | 38 | 503 | 29 | 458 | 2.28e-22 | 100 |
| MS.gene022559.t1 | MTR_6g009580 | 30.841 | 214 | 119 | 4 | 289 | 496 | 29 | 219 | 1.14e-21 | 94.4 |
| MS.gene022559.t1 | MTR_7g059540 | 22.287 | 516 | 275 | 16 | 38 | 503 | 28 | 467 | 1.87e-21 | 97.8 |
| MS.gene022559.t1 | MTR_7g060260 | 22.532 | 466 | 256 | 12 | 38 | 488 | 28 | 403 | 3.44e-19 | 90.5 |
| MS.gene022559.t1 | MTR_7g060115 | 22.822 | 482 | 269 | 15 | 53 | 505 | 44 | 451 | 3.70e-18 | 87.4 |
| MS.gene022559.t1 | MTR_7g060320 | 22.774 | 483 | 272 | 16 | 38 | 488 | 28 | 441 | 6.25e-18 | 86.7 |
| MS.gene022559.t1 | MTR_5g086230 | 30.939 | 181 | 103 | 4 | 37 | 213 | 29 | 191 | 7.65e-18 | 82.4 |
| MS.gene022559.t1 | MTR_7g059525 | 28.877 | 187 | 113 | 2 | 318 | 503 | 108 | 275 | 5.66e-17 | 81.6 |
| MS.gene022559.t1 | MTR_0182s0060 | 24.852 | 507 | 303 | 17 | 40 | 503 | 37 | 508 | 7.20e-17 | 84.0 |
| MS.gene022559.t1 | MTR_6g009600 | 32.593 | 135 | 67 | 2 | 318 | 451 | 23 | 134 | 1.26e-16 | 77.4 |
| MS.gene022559.t1 | MTR_7g059520 | 30.409 | 171 | 99 | 3 | 318 | 487 | 5 | 156 | 1.33e-16 | 78.2 |
| MS.gene022559.t1 | MTR_7g060080 | 32.432 | 148 | 95 | 2 | 363 | 505 | 42 | 189 | 1.70e-16 | 78.6 |
| MS.gene022559.t1 | MTR_7g446270 | 23.780 | 492 | 273 | 20 | 38 | 488 | 31 | 461 | 8.32e-16 | 80.5 |
| MS.gene022559.t1 | MTR_7g060220 | 23.191 | 470 | 259 | 14 | 38 | 488 | 27 | 413 | 1.14e-15 | 79.7 |
| MS.gene022559.t1 | MTR_5g087580 | 24.747 | 198 | 125 | 2 | 316 | 512 | 41 | 215 | 3.51e-15 | 75.1 |
| MS.gene022559.t1 | MTR_4g009340 | 31.176 | 170 | 104 | 4 | 36 | 205 | 42 | 198 | 5.90e-15 | 77.8 |
| MS.gene022559.t1 | MTR_4g009340 | 27.841 | 176 | 103 | 4 | 315 | 489 | 376 | 528 | 6.70e-11 | 65.1 |
| MS.gene022559.t1 | MTR_7g059480 | 32.394 | 142 | 95 | 1 | 363 | 503 | 624 | 765 | 6.22e-15 | 78.2 |
| MS.gene022559.t1 | MTR_7g060840 | 31.333 | 150 | 92 | 3 | 367 | 515 | 287 | 426 | 6.58e-15 | 77.4 |
| MS.gene022559.t1 | MTR_5g086260 | 28.108 | 185 | 107 | 4 | 318 | 500 | 136 | 296 | 7.34e-15 | 75.9 |
| MS.gene022559.t1 | MTR_7g060020 | 33.803 | 142 | 90 | 3 | 367 | 505 | 291 | 431 | 1.00e-14 | 76.6 |
| MS.gene022559.t1 | MTR_4g009620 | 31.765 | 170 | 102 | 4 | 36 | 205 | 42 | 197 | 7.11e-14 | 74.7 |
| MS.gene022559.t1 | MTR_4g009590 | 27.895 | 190 | 124 | 4 | 36 | 225 | 42 | 218 | 1.05e-13 | 73.9 |
| MS.gene022559.t1 | MTR_4g009590 | 29.104 | 134 | 94 | 1 | 373 | 505 | 411 | 544 | 8.80e-12 | 67.8 |
| MS.gene022559.t1 | MTR_8g042170 | 31.788 | 151 | 89 | 2 | 367 | 503 | 299 | 449 | 2.42e-13 | 72.4 |
| MS.gene022559.t1 | MTR_7g060160 | 33.333 | 147 | 84 | 5 | 367 | 505 | 263 | 403 | 4.93e-13 | 71.2 |
| MS.gene022559.t1 | MTR_2g036310 | 29.927 | 137 | 93 | 2 | 371 | 505 | 16 | 151 | 1.23e-12 | 66.2 |
| MS.gene022559.t1 | MTR_7g017620 | 28.788 | 198 | 126 | 6 | 4 | 200 | 9 | 192 | 2.70e-12 | 69.7 |
| MS.gene022559.t1 | MTR_7g017620 | 30.075 | 133 | 91 | 2 | 371 | 502 | 399 | 530 | 3.11e-11 | 66.2 |
| MS.gene022559.t1 | MTR_7g067750 | 27.111 | 225 | 139 | 9 | 2 | 218 | 26 | 233 | 4.78e-12 | 68.6 |
| MS.gene022559.t1 | MTR_7g059810 | 24.249 | 466 | 248 | 18 | 46 | 488 | 38 | 421 | 7.74e-12 | 67.8 |
| MS.gene022559.t1 | MTR_8g042830 | 21.687 | 332 | 200 | 9 | 184 | 504 | 124 | 406 | 9.45e-12 | 67.4 |
| MS.gene022559.t1 | MTR_7g059510 | 28.369 | 141 | 98 | 2 | 369 | 506 | 282 | 422 | 1.68e-11 | 66.6 |
| MS.gene022559.t1 | MTR_3g466740 | 27.320 | 194 | 122 | 6 | 37 | 230 | 31 | 205 | 2.30e-11 | 66.2 |
| MS.gene022559.t1 | MTR_7g067600 | 27.273 | 176 | 114 | 3 | 37 | 209 | 29 | 193 | 6.82e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022559.t1 | AT2G44930 | 30.162 | 494 | 239 | 9 | 36 | 508 | 84 | 492 | 6.25e-56 | 195 |
| MS.gene022559.t1 | AT3G60470 | 29.870 | 539 | 269 | 15 | 38 | 508 | 34 | 531 | 4.77e-55 | 194 |
| MS.gene022559.t1 | AT2G28580 | 28.921 | 491 | 244 | 10 | 36 | 508 | 41 | 444 | 3.98e-52 | 184 |
| MS.gene022559.t1 | AT2G28580 | 28.921 | 491 | 244 | 10 | 36 | 508 | 109 | 512 | 9.95e-52 | 184 |
| MS.gene022559.t1 | AT2G28580 | 28.803 | 493 | 242 | 11 | 36 | 508 | 123 | 526 | 1.16e-51 | 184 |
| MS.gene022559.t1 | AT2G28580 | 29.167 | 480 | 240 | 9 | 36 | 508 | 109 | 495 | 3.21e-51 | 182 |
| MS.gene022559.t1 | AT2G28580 | 29.046 | 482 | 238 | 10 | 36 | 508 | 123 | 509 | 3.59e-51 | 183 |
| MS.gene022559.t1 | AT4G31980 | 27.660 | 470 | 231 | 12 | 36 | 496 | 293 | 662 | 8.85e-47 | 173 |
| MS.gene022559.t1 | AT5G11290 | 25.519 | 482 | 265 | 15 | 24 | 503 | 22 | 411 | 4.55e-40 | 150 |
| MS.gene022559.t1 | AT1G67150 | 27.178 | 482 | 246 | 12 | 35 | 503 | 5 | 394 | 3.84e-39 | 147 |
| MS.gene022559.t1 | AT1G67150 | 27.178 | 482 | 246 | 12 | 35 | 503 | 5 | 394 | 3.84e-39 | 147 |
| MS.gene022559.t1 | AT2G36430 | 25.055 | 455 | 259 | 11 | 36 | 488 | 45 | 419 | 1.16e-38 | 147 |
| MS.gene022559.t1 | AT3G50150 | 27.754 | 472 | 269 | 11 | 38 | 505 | 92 | 495 | 1.43e-38 | 147 |
| MS.gene022559.t1 | AT1G67150 | 26.955 | 486 | 246 | 12 | 35 | 503 | 5 | 398 | 1.54e-38 | 145 |
| MS.gene022559.t1 | AT3G50170 | 25.819 | 519 | 304 | 13 | 2 | 503 | 69 | 523 | 1.09e-37 | 145 |
| MS.gene022559.t1 | AT3G47250 | 26.176 | 489 | 273 | 13 | 27 | 503 | 52 | 464 | 9.33e-37 | 142 |
| MS.gene022559.t1 | AT3G47250 | 26.176 | 489 | 273 | 13 | 27 | 503 | 52 | 464 | 9.33e-37 | 142 |
| MS.gene022559.t1 | AT3G47250 | 26.176 | 489 | 273 | 13 | 27 | 503 | 52 | 464 | 9.33e-37 | 142 |
| MS.gene022559.t1 | AT3G47210 | 28.166 | 458 | 220 | 12 | 25 | 467 | 82 | 445 | 1.81e-35 | 138 |
| MS.gene022559.t1 | AT3G50140 | 26.273 | 491 | 259 | 14 | 38 | 505 | 115 | 525 | 3.08e-34 | 136 |
| MS.gene022559.t1 | AT3G50120 | 26.383 | 470 | 283 | 12 | 38 | 503 | 105 | 515 | 3.00e-33 | 133 |
| MS.gene022559.t1 | AT2G28580 | 27.488 | 422 | 197 | 11 | 36 | 437 | 123 | 455 | 6.29e-33 | 131 |
| MS.gene022559.t1 | AT3G50130 | 26.432 | 454 | 270 | 12 | 38 | 488 | 141 | 533 | 3.56e-31 | 127 |
| MS.gene022559.t1 | AT3G50180 | 25.667 | 487 | 259 | 16 | 32 | 503 | 174 | 572 | 8.86e-29 | 120 |
| MS.gene022559.t1 | AT3G47200 | 25.261 | 479 | 262 | 13 | 25 | 488 | 35 | 432 | 1.66e-27 | 115 |
| MS.gene022559.t1 | AT3G47200 | 25.261 | 479 | 262 | 13 | 25 | 488 | 35 | 432 | 1.66e-27 | 115 |
| MS.gene022559.t1 | AT5G22540 | 23.226 | 465 | 257 | 13 | 36 | 488 | 31 | 407 | 2.63e-26 | 111 |
| MS.gene022559.t1 | AT3G44710 | 24.280 | 486 | 306 | 14 | 36 | 503 | 47 | 488 | 4.11e-25 | 108 |
| MS.gene022559.t1 | AT3G50190 | 23.789 | 475 | 258 | 13 | 38 | 503 | 98 | 477 | 6.93e-23 | 102 |
| MS.gene022559.t1 | AT5G11290 | 23.326 | 433 | 239 | 15 | 73 | 503 | 1 | 342 | 1.39e-22 | 99.8 |
| MS.gene022559.t1 | AT1G65985 | 34.054 | 185 | 79 | 4 | 38 | 204 | 16 | 175 | 3.98e-20 | 93.6 |
| MS.gene022559.t1 | AT1G65985 | 37.903 | 124 | 76 | 1 | 368 | 490 | 304 | 427 | 1.54e-16 | 82.4 |
| MS.gene022559.t1 | AT1G65985 | 34.054 | 185 | 79 | 4 | 38 | 204 | 16 | 175 | 3.98e-20 | 93.6 |
| MS.gene022559.t1 | AT1G65985 | 37.903 | 124 | 76 | 1 | 368 | 490 | 304 | 427 | 1.54e-16 | 82.4 |
| MS.gene022559.t1 | AT3G50170 | 29.439 | 214 | 121 | 5 | 2 | 205 | 69 | 262 | 1.32e-19 | 91.7 |
| MS.gene022559.t1 | AT5G22550 | 31.579 | 209 | 119 | 8 | 2 | 206 | 9 | 197 | 1.73e-19 | 91.7 |
| MS.gene022559.t1 | AT3G50160 | 31.285 | 179 | 103 | 4 | 32 | 210 | 100 | 258 | 1.86e-18 | 88.6 |
| MS.gene022559.t1 | AT3G50160 | 27.679 | 224 | 133 | 3 | 286 | 503 | 285 | 485 | 8.67e-17 | 83.6 |
| MS.gene022559.t1 | AT1G67150 | 29.947 | 187 | 107 | 3 | 318 | 503 | 188 | 351 | 2.29e-18 | 87.4 |
| MS.gene022559.t1 | AT1G67150 | 31.694 | 183 | 94 | 5 | 35 | 207 | 5 | 166 | 3.20e-15 | 77.8 |
| MS.gene022559.t1 | AT3G50150 | 31.429 | 175 | 99 | 4 | 38 | 210 | 92 | 247 | 9.42e-17 | 83.2 |
| MS.gene022559.t1 | AT3G50140 | 30.952 | 168 | 96 | 4 | 38 | 205 | 115 | 262 | 6.78e-16 | 80.1 |
| MS.gene022559.t1 | AT5G22560 | 26.882 | 186 | 103 | 4 | 36 | 207 | 47 | 213 | 3.15e-15 | 78.6 |
| MS.gene022559.t1 | AT3G50190 | 27.717 | 184 | 110 | 5 | 38 | 221 | 98 | 258 | 6.27e-13 | 70.9 |
| MS.gene022559.t1 | AT3G50190 | 27.717 | 184 | 110 | 5 | 38 | 221 | 98 | 258 | 6.27e-13 | 70.9 |
| MS.gene022559.t1 | AT3G50190 | 27.717 | 184 | 110 | 5 | 38 | 221 | 98 | 258 | 7.36e-13 | 70.5 |
| MS.gene022559.t1 | AT3G02645 | 32.203 | 118 | 79 | 1 | 373 | 489 | 380 | 497 | 8.13e-13 | 71.2 |
| MS.gene022559.t1 | AT3G44700 | 26.389 | 144 | 99 | 4 | 5 | 143 | 16 | 157 | 8.52e-11 | 62.4 |
Find 0 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGCATTATCAGAATATT+TGG | - | 56146:17389-17408 | MS.gene022559:CDS | 20.0% |
| !! | GAAACATAATTGCATATATA+AGG | + | 56146:17199-17218 | MS.gene022559:intergenic | 20.0% |
| !!! | AAATTTTTCTTTGCTTATGT+TGG | + | 56146:16357-16376 | MS.gene022559:intergenic | 20.0% |
| !!! | AAGAAATATTATTTTGTGAG+TGG | - | 56146:16746-16765 | MS.gene022559:CDS | 20.0% |
| !!! | AATTTTTCTTTGCTTATGTT+GGG | + | 56146:16356-16375 | MS.gene022559:intergenic | 20.0% |
| !!! | TTTATCAGAATGTTTTTTCT+TGG | + | 56146:16807-16826 | MS.gene022559:intergenic | 20.0% |
| ! | ATCAAATCAGTGAAATGTTT+AGG | + | 56146:16860-16879 | MS.gene022559:intergenic | 25.0% |
| ! | ATGTTTCAATCTAAATGACT+TGG | + | 56146:16483-16502 | MS.gene022559:intergenic | 25.0% |
| ! | ATTAACTTTGTTACTGTTCT+TGG | + | 56146:16947-16966 | MS.gene022559:intergenic | 25.0% |
| ! | CATAAGCAAAGAAAAATTTG+TGG | - | 56146:16358-16377 | MS.gene022559:CDS | 25.0% |
| ! | GTAACAAAGTTAATAGATTC+TGG | - | 56146:16953-16972 | MS.gene022559:CDS | 25.0% |
| !! | ATCTGAAACTGAATATGAAA+TGG | - | 56146:16028-16047 | MS.gene022559:CDS | 25.0% |
| !! | ATTTGTGGAAACAATTTTGT+TGG | - | 56146:16373-16392 | MS.gene022559:CDS | 25.0% |
| !! | CAAGATCAAGAAAACTTTTA+TGG | + | 56146:16646-16665 | MS.gene022559:intergenic | 25.0% |
| !!! | AACATTTCACTGATTTGATA+AGG | - | 56146:16861-16880 | MS.gene022559:CDS | 25.0% |
| AATCAACATCAACTTGTGTA+TGG | + | 56146:17240-17259 | MS.gene022559:intergenic | 30.0% | |
| AATCTATGAGCAATAACCAT+AGG | - | 56146:16825-16844 | MS.gene022559:CDS | 30.0% | |
| ACTCCTCAATTAATCTCAAT+TGG | - | 56146:16155-16174 | MS.gene022559:CDS | 30.0% | |
| AGATTCATCAGCACAAAAAA+AGG | + | 56146:16584-16603 | MS.gene022559:intergenic | 30.0% | |
| ATTACATTCTAACACAAGCT+TGG | - | 56146:16510-16529 | MS.gene022559:CDS | 30.0% | |
| CAATGCAACAACACAAAAAA+AGG | - | 56146:16210-16229 | MS.gene022559:CDS | 30.0% | |
| CAGAGAAAATAACTCAGAAA+TGG | + | 56146:17037-17056 | MS.gene022559:intergenic | 30.0% | |
| TGGTTCAAACATGAAAATGA+AGG | + | 56146:17073-17092 | MS.gene022559:intergenic | 30.0% | |
| TTGATACTGACATTGTTCTA+GGG | + | 56146:17170-17189 | MS.gene022559:intergenic | 30.0% | |
| ! | ACACAACAGAATGTGTTTTA+AGG | - | 56146:17134-17153 | MS.gene022559:CDS | 30.0% |
| ! | GTTGAAGTTCTTTATTTCCA+AGG | + | 56146:16190-16209 | MS.gene022559:intergenic | 30.0% |
| ! | TATTTTGTGAGTGGCTTAAT+TGG | - | 56146:16755-16774 | MS.gene022559:CDS | 30.0% |
| ! | TCTTTATTTCCAAGGTGAAT+TGG | + | 56146:16182-16201 | MS.gene022559:intergenic | 30.0% |
| ! | TTTTGTTAAGAAACCGTTCA+TGG | - | 56146:16417-16436 | MS.gene022559:CDS | 30.0% |
| !! | AAGCTTCTTGTTTCACTTTT+CGG | + | 56146:16133-16152 | MS.gene022559:intergenic | 30.0% |
| !! | ACAAGTTGATGTTGATTTGT+TGG | - | 56146:17243-17262 | MS.gene022559:CDS | 30.0% |
| !! | TTAACGGATTTAGAAAAGAG+TGG | - | 56146:16905-16924 | MS.gene022559:CDS | 30.0% |
| !!! | CTTTTTTTGTGTTGTTGCAT+TGG | + | 56146:16212-16231 | MS.gene022559:intergenic | 30.0% |
| AAGAAACCGTTCATGGAAAT+CGG | - | 56146:16424-16443 | MS.gene022559:CDS | 35.0% | |
| AATGGGAAGTGATAAAGAAG+TGG | - | 56146:17291-17310 | MS.gene022559:CDS | 35.0% | |
| AGCAATAACCATAGGTTTCA+AGG | - | 56146:16833-16852 | MS.gene022559:CDS | 35.0% | |
| ATAGACGCTCATAGAAGAAA+TGG | + | 56146:16241-16260 | MS.gene022559:intergenic | 35.0% | |
| ATGTATCCGATTTCCATGAA+CGG | + | 56146:16433-16452 | MS.gene022559:intergenic | 35.0% | |
| CTGCTAAACTTAACTCTTCA+AGG | + | 56146:16079-16098 | MS.gene022559:intergenic | 35.0% | |
| CTTGATACTGACATTGTTCT+AGG | + | 56146:17171-17190 | MS.gene022559:intergenic | 35.0% | |
| GAAGTGATTGTGCATGAAAT+GGG | - | 56146:17274-17293 | MS.gene022559:CDS | 35.0% | |
| GACTTTGTAGTTCTTGATCA+TGG | + | 56146:16282-16301 | MS.gene022559:intergenic | 35.0% | |
| GGACCAATTGAGATTAATTG+AGG | + | 56146:16161-16180 | MS.gene022559:intergenic | 35.0% | |
| TCTAAATCCGTTAAATCAGC+TGG | + | 56146:16899-16918 | MS.gene022559:intergenic | 35.0% | |
| TGGTCTTTGTAAACATGTTG+TGG | - | 56146:17327-17346 | MS.gene022559:CDS | 35.0% | |
| ! | TTACCTTCCAGCTGATTTAA+CGG | - | 56146:16889-16908 | MS.gene022559:CDS | 35.0% |
| !! | ACGTGAAACTAAGCTTGTTT+TGG | - | 56146:16709-16728 | MS.gene022559:CDS | 35.0% |
| !! | CTGAGTTATTTTCTCTGCTT+AGG | - | 56146:17040-17059 | MS.gene022559:CDS | 35.0% |
| !! | TGGTGTATTTTAGAGATGCT+TGG | - | 56146:17437-17456 | MS.gene022559:CDS | 35.0% |
| !! | TTAATTGGTGATGTTGGTAG+TGG | - | 56146:16770-16789 | MS.gene022559:CDS | 35.0% |
| !!! | CTTCTTTTTTGTCGTCGTTA+GGG | + | 56146:16622-16641 | MS.gene022559:intergenic | 35.0% |
| !!! | GTGAGTTTTGAGAAAGTTGT+GGG | - | 56146:16977-16996 | MS.gene022559:CDS | 35.0% |
| !!! | TCTTCTTTTTTGTCGTCGTT+AGG | + | 56146:16623-16642 | MS.gene022559:intergenic | 35.0% |
| !!! | TGAGTTTTGAGAAAGTTGTG+GGG | - | 56146:16978-16997 | MS.gene022559:CDS | 35.0% |
| !!! | TGTGAGTTTTGAGAAAGTTG+TGG | - | 56146:16976-16995 | MS.gene022559:CDS | 35.0% |
| AATCCGTTAAATCAGCTGGA+AGG | + | 56146:16895-16914 | MS.gene022559:intergenic | 40.0% | |
| AGCAGATTGTAGCATCTACA+AGG | - | 56146:16094-16113 | MS.gene022559:CDS | 40.0% | |
| GGAAGTGATTGTGCATGAAA+TGG | - | 56146:17273-17292 | MS.gene022559:CDS | 40.0% | |
| TCAATTGGTCCAATTCACCT+TGG | - | 56146:16170-16189 | MS.gene022559:CDS | 40.0% | |
| ! | CACAAGGGACTTGATTTTGT+TGG | - | 56146:16547-16566 | MS.gene022559:CDS | 40.0% |
| ! | GAATATTTGGAACCGTACCA+TGG | - | 56146:17402-17421 | MS.gene022559:CDS | 40.0% |
| ! | GTTTAGGACCTTGAAACCTA+TGG | + | 56146:16844-16863 | MS.gene022559:intergenic | 40.0% |
| !! | AGAGCTAGTTCTACTTTGGT+TGG | - | 56146:17460-17479 | MS.gene022559:CDS | 40.0% |
| !! | AGTGGCTTAATTGGTGATGT+TGG | - | 56146:16764-16783 | MS.gene022559:CDS | 40.0% |
| !! | TGTTGATTTGTTGGTCGAGA+AGG | - | 56146:17252-17271 | MS.gene022559:CDS | 40.0% |
| !! | TTCACTTTTCGGAGATTGTG+AGG | + | 56146:16122-16141 | MS.gene022559:intergenic | 40.0% |
| !! | TTGGAGAGCTAGTTCTACTT+TGG | - | 56146:17456-17475 | MS.gene022559:CDS | 40.0% |
| !!! | GTTGGATGCTGTTTTCATCA+TGG | - | 56146:16391-16410 | MS.gene022559:CDS | 40.0% |
| ACCATTTCAAAGCGCGTCTA+AGG | - | 56146:17089-17108 | MS.gene022559:CDS | 45.0% | |
| GTGTGATCAACCTTCAACTG+CGG | + | 56146:17118-17137 | MS.gene022559:intergenic | 45.0% | |
| TCTAAGGATTCCGCAGTTGA+AGG | - | 56146:17105-17124 | MS.gene022559:CDS | 45.0% | |
| ! | GAAGTGGCAGTGCTTGTTAA+TGG | - | 56146:17307-17326 | MS.gene022559:CDS | 45.0% |
| !! | GACATTGTTCTAGGGCAATG+AGG | + | 56146:17162-17181 | MS.gene022559:intergenic | 45.0% |
| !! | GCTCAGCAAAAGCATCACAA+GGG | - | 56146:16532-16551 | MS.gene022559:CDS | 45.0% |
| !! | TCCTTAGACGCGCTTTGAAA+TGG | + | 56146:17093-17112 | MS.gene022559:intergenic | 45.0% |
| ACCACAATGCAGCCATGGTA+CGG | + | 56146:17417-17436 | MS.gene022559:intergenic | 50.0% | |
| TACCATGGCTGCATTGTGGT+TGG | - | 56146:17417-17436 | MS.gene022559:CDS | 50.0% | |
| !! | GGCTCAGCAAAAGCATCACA+AGG | - | 56146:16531-16550 | MS.gene022559:CDS | 50.0% |
| ACCGTACCATGGCTGCATTG+TGG | - | 56146:17413-17432 | MS.gene022559:CDS | 55.0% | |
| CACCAACCACAATGCAGCCA+TGG | + | 56146:17422-17441 | MS.gene022559:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 56146 | gene | 15996 | 17543 | 15996 | ID=MS.gene022559 |
| 56146 | mRNA | 15996 | 17543 | 15996 | ID=MS.gene022559.t1;Parent=MS.gene022559 |
| 56146 | exon | 15996 | 17543 | 15996 | ID=MS.gene022559.t1.exon1;Parent=MS.gene022559.t1 |
| 56146 | CDS | 15996 | 17543 | 15996 | ID=cds.MS.gene022559.t1;Parent=MS.gene022559.t1 |
| Gene Sequence |
| Protein sequence |
