AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38854

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38854.t1 MTR_8g005295 94.336 512 29 0 1 512 1 512 0.0 997
MS.gene38854.t1 MTR_8g005285 87.791 516 43 2 1 513 1 499 0.0 915
MS.gene38854.t1 MTR_8g005235 49.203 502 181 10 19 512 9 444 3.73e-155 449
MS.gene38854.t1 MTR_8g005325 49.400 500 184 9 19 512 38 474 5.98e-154 447
MS.gene38854.t1 MTR_8g006525 46.016 502 184 13 12 505 4 426 2.89e-128 380
MS.gene38854.t1 MTR_0209s0060 45.859 495 180 13 19 505 11 425 2.24e-127 378
MS.gene38854.t1 MTR_0209s0030 45.859 495 180 13 19 505 11 425 2.24e-127 378
MS.gene38854.t1 MTR_8g005265 44.309 492 195 13 36 511 27 455 2.72e-124 371
MS.gene38854.t1 MTR_8g005225 43.511 524 216 14 1 510 1 458 6.41e-122 365
MS.gene38854.t1 MTR_6g010920 31.677 483 223 15 32 505 21 405 1.93e-61 207
MS.gene38854.t1 MTR_6g009590 30.247 486 230 12 22 494 7 396 2.15e-60 204
MS.gene38854.t1 MTR_3g079390 31.942 479 241 14 33 500 37 441 1.44e-59 203
MS.gene38854.t1 MTR_6g011050 31.049 467 218 13 36 494 24 394 1.52e-58 199
MS.gene38854.t1 MTR_4g112660 39.233 339 115 9 188 507 90 356 1.31e-57 196
MS.gene38854.t1 MTR_4g112660 41.667 84 45 3 36 118 6 86 1.05e-11 67.0
MS.gene38854.t1 MTR_6g009610 30.833 480 225 15 25 494 14 396 2.87e-56 194
MS.gene38854.t1 MTR_6g011060 29.209 493 236 14 25 500 14 410 3.47e-55 191
MS.gene38854.t1 MTR_3g107590 31.579 475 217 15 34 493 24 405 1.48e-53 187
MS.gene38854.t1 MTR_0024s0080 31.049 467 210 14 38 494 27 391 6.65e-53 184
MS.gene38854.t1 MTR_6g010890 29.505 505 236 16 25 505 14 422 2.20e-51 181
MS.gene38854.t1 MTR_6g010810 30.165 484 225 15 35 505 21 404 3.09e-51 180
MS.gene38854.t1 MTR_6g009170 30.691 492 228 16 22 493 7 405 3.06e-49 175
MS.gene38854.t1 MTR_2g035640 28.767 438 204 12 73 500 1 340 2.81e-40 149
MS.gene38854.t1 MTR_2g036320 27.292 480 260 15 29 502 61 457 1.42e-39 150
MS.gene38854.t1 MTR_2g041180 26.737 475 257 14 36 502 50 441 1.86e-38 147
MS.gene38854.t1 MTR_5g086340 26.569 478 261 13 37 505 33 429 1.83e-36 140
MS.gene38854.t1 MTR_6g010850 29.777 403 177 13 109 500 33 340 1.01e-32 129
MS.gene38854.t1 MTR_5g016570 28.211 475 252 16 32 485 97 503 2.37e-31 127
MS.gene38854.t1 MTR_7g011980 34.091 220 113 5 291 500 136 333 4.76e-28 115
MS.gene38854.t1 MTR_7g011980 31.579 171 66 4 29 199 18 137 3.02e-16 80.5
MS.gene38854.t1 MTR_6g009580 32.710 214 112 5 289 493 29 219 1.32e-23 99.8
MS.gene38854.t1 MTR_7g059540 22.642 530 294 16 12 500 4 458 4.64e-22 99.4
MS.gene38854.t1 MTR_5g086230 34.426 183 94 6 37 213 29 191 3.14e-21 92.0
MS.gene38854.t1 MTR_7g059540 23.062 516 319 16 12 500 3 467 5.87e-21 96.3
MS.gene38854.t1 MTR_7g060260 25.743 303 165 6 184 485 160 403 5.88e-19 89.7
MS.gene38854.t1 MTR_7g060310 23.722 489 291 16 46 500 39 479 2.20e-18 88.2
MS.gene38854.t1 MTR_6g009600 33.333 135 66 2 315 448 23 134 3.98e-17 79.0
MS.gene38854.t1 MTR_7g060320 22.981 483 268 16 38 485 28 441 4.79e-17 84.0
MS.gene38854.t1 MTR_7g060220 24.468 470 250 14 38 485 27 413 1.51e-16 82.4
MS.gene38854.t1 MTR_7g059525 28.877 187 113 2 315 500 108 275 1.93e-16 80.1
MS.gene38854.t1 MTR_7g059520 29.825 171 100 3 315 484 5 156 3.09e-16 77.0
MS.gene38854.t1 MTR_7g059480 27.861 201 122 3 304 500 584 765 3.89e-16 82.0
MS.gene38854.t1 MTR_0182s0060 24.901 506 301 15 40 500 37 508 9.61e-16 80.1
MS.gene38854.t1 MTR_5g086260 28.061 196 114 5 304 497 126 296 1.13e-15 78.6
MS.gene38854.t1 MTR_7g060080 30.872 149 98 2 360 503 42 190 1.73e-15 75.5
MS.gene38854.t1 MTR_4g009340 32.143 168 101 4 36 203 42 196 3.73e-15 78.6
MS.gene38854.t1 MTR_5g087580 25.397 189 117 2 313 500 41 206 6.17e-15 74.3
MS.gene38854.t1 MTR_7g067970 32.955 176 106 6 36 210 29 193 6.72e-15 77.8
MS.gene38854.t1 MTR_7g060115 23.241 469 280 16 53 502 44 451 1.16e-14 76.6
MS.gene38854.t1 MTR_4g009620 33.333 165 96 4 36 200 42 192 1.80e-14 76.3
MS.gene38854.t1 MTR_7g060840 24.066 482 256 19 46 511 38 425 1.98e-14 75.9
MS.gene38854.t1 MTR_4g009590 30.952 168 103 4 36 203 42 196 7.71e-14 74.3
MS.gene38854.t1 MTR_4g009590 28.750 160 105 4 348 502 389 544 4.25e-11 65.9
MS.gene38854.t1 MTR_7g060020 33.099 142 91 3 364 502 291 431 9.77e-14 73.6
MS.gene38854.t1 MTR_7g446270 22.887 485 283 18 38 485 31 461 1.46e-13 73.2
MS.gene38854.t1 MTR_3g466740 28.866 194 119 6 37 230 31 205 2.35e-12 69.3
MS.gene38854.t1 MTR_8g042170 31.126 151 90 2 364 500 299 449 2.58e-12 69.3
MS.gene38854.t1 MTR_7g067750 27.753 227 131 10 2 216 26 231 2.71e-12 69.3
MS.gene38854.t1 MTR_7g017620 28.283 198 127 6 4 200 9 192 4.73e-12 68.9
MS.gene38854.t1 MTR_7g060160 30.986 142 94 3 364 502 263 403 4.77e-12 68.2
MS.gene38854.t1 MTR_8g042830 21.320 197 122 2 315 501 233 406 9.55e-12 67.4
MS.gene38854.t1 MTR_2g036310 28.467 137 95 2 368 502 16 151 2.04e-11 62.8
MS.gene38854.t1 MTR_7g059510 22.124 339 206 7 184 503 123 422 2.59e-11 65.9
MS.gene38854.t1 MTR_0067s0010 29.050 179 106 6 37 213 44 203 2.81e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38854.t1 AT2G44930 30.645 496 231 12 36 505 84 492 1.35e-53 189
MS.gene38854.t1 AT3G60470 29.609 537 270 14 38 505 34 531 1.24e-51 184
MS.gene38854.t1 AT2G28580 29.936 471 245 9 36 505 109 495 2.76e-49 177
MS.gene38854.t1 AT2G28580 29.810 473 243 10 36 505 123 509 4.74e-49 177
MS.gene38854.t1 AT2G28580 29.485 485 246 10 36 505 41 444 6.95e-49 175
MS.gene38854.t1 AT2G28580 29.485 485 246 10 36 505 109 512 1.54e-48 176
MS.gene38854.t1 AT2G28580 29.363 487 244 11 36 505 123 526 1.86e-48 176
MS.gene38854.t1 AT4G31980 28.298 470 225 12 36 493 293 662 9.08e-48 176
MS.gene38854.t1 AT5G11290 25.996 477 266 15 24 500 22 411 5.87e-42 155
MS.gene38854.t1 AT1G67150 27.178 482 243 11 35 500 5 394 1.97e-39 148
MS.gene38854.t1 AT1G67150 27.178 482 243 11 35 500 5 394 1.97e-39 148
MS.gene38854.t1 AT1G67150 26.955 486 243 11 35 500 5 398 9.43e-39 146
MS.gene38854.t1 AT2G36430 25.758 462 244 14 36 485 45 419 2.56e-37 143
MS.gene38854.t1 AT3G50150 26.923 468 275 10 38 502 92 495 4.64e-36 140
MS.gene38854.t1 AT3G47250 26.585 489 268 16 27 500 52 464 9.13e-35 136
MS.gene38854.t1 AT3G47250 26.585 489 268 16 27 500 52 464 9.13e-35 136
MS.gene38854.t1 AT3G47250 26.585 489 268 16 27 500 52 464 9.13e-35 136
MS.gene38854.t1 AT3G47210 27.133 457 219 14 27 464 84 445 8.95e-33 130
MS.gene38854.t1 AT3G50140 26.261 476 275 11 38 502 115 525 2.45e-32 130
MS.gene38854.t1 AT3G50120 26.695 472 276 12 38 500 105 515 2.01e-30 124
MS.gene38854.t1 AT3G50180 25.926 486 262 15 29 500 171 572 3.80e-29 121
MS.gene38854.t1 AT2G28580 28.186 408 193 11 36 426 123 447 4.74e-29 120
MS.gene38854.t1 AT3G50130 26.327 452 270 11 38 485 141 533 1.05e-28 120
MS.gene38854.t1 AT5G22540 24.471 425 226 12 36 450 31 370 4.69e-26 110
MS.gene38854.t1 AT3G47200 24.686 478 259 14 27 485 37 432 1.63e-25 109
MS.gene38854.t1 AT3G47200 24.686 478 259 14 27 485 37 432 1.63e-25 109
MS.gene38854.t1 AT3G50190 24.313 473 255 13 38 500 98 477 1.94e-23 103
MS.gene38854.t1 AT5G11290 23.131 428 243 14 73 500 1 342 6.63e-23 100
MS.gene38854.t1 AT5G22550 33.333 207 110 9 2 200 5 191 5.34e-20 93.2
MS.gene38854.t1 AT1G65985 34.595 185 78 4 38 204 16 175 9.00e-20 92.4
MS.gene38854.t1 AT1G65985 37.097 124 77 1 365 487 304 427 5.21e-16 80.9
MS.gene38854.t1 AT1G65985 34.595 185 78 4 38 204 16 175 9.00e-20 92.4
MS.gene38854.t1 AT1G65985 37.097 124 77 1 365 487 304 427 5.21e-16 80.9
MS.gene38854.t1 AT1G67150 30.481 187 106 3 315 500 188 351 1.05e-19 91.3
MS.gene38854.t1 AT1G67150 31.250 176 91 4 35 200 5 160 2.03e-14 75.1
MS.gene38854.t1 AT3G50170 30.144 209 116 5 2 200 69 257 9.70e-19 89.7
MS.gene38854.t1 AT3G50170 30.645 186 104 2 317 500 361 523 7.61e-17 84.0
MS.gene38854.t1 AT3G50170 30.144 209 116 5 2 200 69 257 1.03e-18 89.0
MS.gene38854.t1 AT3G44710 30.000 210 118 6 36 242 47 230 2.68e-17 85.1
MS.gene38854.t1 AT3G50160 30.168 179 105 4 32 210 100 258 3.83e-16 81.6
MS.gene38854.t1 AT3G50160 29.032 186 107 2 317 500 323 485 7.80e-16 80.5
MS.gene38854.t1 AT3G50150 31.902 163 92 3 38 200 92 235 4.22e-16 81.3
MS.gene38854.t1 AT5G22560 26.222 225 128 7 36 246 47 247 7.18e-15 77.4
MS.gene38854.t1 AT3G50140 31.288 163 92 4 38 200 115 257 3.71e-14 74.7
MS.gene38854.t1 AT3G02645 31.356 118 80 1 370 486 380 497 2.99e-12 69.3
MS.gene38854.t1 AT3G50190 27.950 161 96 4 38 198 98 238 3.56e-11 65.1
MS.gene38854.t1 AT3G50190 27.950 161 96 4 38 198 98 238 3.91e-11 65.1
MS.gene38854.t1 AT3G50190 27.950 161 96 4 38 198 98 238 3.91e-11 65.1
MS.gene38854.t1 AT3G44700 33.929 112 68 4 36 143 48 157 6.82e-11 62.4

Find 58 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCATTATCAGAATATT+TGG 0.154201 8.4:-51876907 MS.gene38854:CDS
CTTGATACTGACATTGTTCT+AGG 0.157660 8.4:+51877128 None:intergenic
ATTAACTTTGTTACTGTTCT+TGG 0.216519 8.4:+51877352 None:intergenic
TCTCTAGTAGAAGAGAATTT+TGG 0.225438 8.4:+51876769 None:intergenic
CTGCTAAACTTAACTCTTCT+AGG 0.239207 8.4:+51878211 None:intergenic
ACTTGAAACTAAGCTTGTTT+TGG 0.267436 8.4:-51877578 MS.gene38854:CDS
CAAGAACTACAAACTTTATC+TGG 0.290303 8.4:-51878001 MS.gene38854:CDS
ACCATTTCAAAGCGCGTCTA+AGG 0.318480 8.4:-51877207 MS.gene38854:CDS
GAAACATAATTGCATATATA+AGG 0.329067 8.4:+51877100 None:intergenic
TCAAGAAAACTTTCATGATC+TGG 0.348149 8.4:+51877649 None:intergenic
TTAACTTTGTTACTGTTCTT+GGG 0.372657 8.4:+51877353 None:intergenic
TATCAGATCAGTGAAATGTT+TGG 0.373708 8.4:+51877429 None:intergenic
ATCAGATCAGTGAAATGTTT+GGG 0.376927 8.4:+51877430 None:intergenic
GAGCTAGTTCTACTTTGGTT+GGG 0.384217 8.4:-51876835 MS.gene38854:CDS
AACATTTCACTGATCTGATA+AGG 0.390830 8.4:-51877426 MS.gene38854:CDS
ACTCCTCAATTAATCTCAAT+TGG 0.392658 8.4:-51878132 MS.gene38854:CDS
CATAGAAAATTACTCAGAAA+TGG 0.395423 8.4:+51877262 None:intergenic
GTAACAAAGTTAATAGATTC+TGG 0.396787 8.4:-51877343 MS.gene38854:CDS
GAAGTGGCAATGCTTGTTAA+TGG 0.398822 8.4:-51876989 MS.gene38854:CDS
AGAGCTAGTTCTACTTTGGT+TGG 0.408855 8.4:-51876836 MS.gene38854:CDS
AAGTTTGTAGTTCTTGATCA+TGG 0.408979 8.4:+51878008 None:intergenic
TCCTTAGACGCGCTTTGAAA+TGG 0.415205 8.4:+51877206 None:intergenic
GAGAAACAGTTCATGGAAAT+CGG 0.420757 8.4:-51877863 MS.gene38854:CDS
GTTTGGGACCTTGTAACCTA+TGG 0.438075 8.4:+51877446 None:intergenic
AATCAACATCAACTTGTGTA+TGG 0.449318 8.4:+51877059 None:intergenic
ATCTGAAACTGAATATGAAA+TGG 0.454211 8.4:-51878259 MS.gene38854:CDS
ACAAGTTGATGTTGATTTGT+TGG 0.455972 8.4:-51877053 MS.gene38854:CDS
GGAAGTGATTGTGCATGAAA+TGG 0.461128 8.4:-51877023 MS.gene38854:CDS
GGACCAATTGAGATTAATTG+AGG 0.464532 8.4:+51878129 None:intergenic
TTGGAGAGCTAGTTCTACTT+TGG 0.466290 8.4:-51876840 MS.gene38854:CDS
ATAGACGCTCATAGAAGAAA+AGG 0.487231 8.4:+51878049 None:intergenic
TAAGCTCATTGATAATATCA+TGG 0.492920 8.4:+51876930 None:intergenic
AGCAGATTGTAGCATCTACA+AGG 0.504878 8.4:-51878193 MS.gene38854:CDS
TCTAAGGATTCCGCAATTGA+AGG 0.506886 8.4:-51877191 MS.gene38854:CDS
ATTACATTCTAACACAAGCT+TGG 0.511928 8.4:-51877777 MS.gene38854:CDS
TGTTGATTTGTTGGTGGAGA+AGG 0.512953 8.4:-51877044 MS.gene38854:CDS
TCACTCTTTCCTAAATGAGC+TGG 0.518927 8.4:+51877391 None:intergenic
TTGATACTGACATTGTTCTA+GGG 0.522905 8.4:+51877129 None:intergenic
ATGTTTCAATCTAAATGACT+TGG 0.523292 8.4:+51877807 None:intergenic
GAAGTGATTGTGCATGAAAT+GGG 0.523677 8.4:-51877022 MS.gene38854:CDS
CACCAACCACAATGCAGCCA+TGG 0.546124 8.4:+51876877 None:intergenic
AGTGGCATAATTGGTGATGT+TGG 0.552422 8.4:-51877523 MS.gene38854:CDS
TCAATTGGTCCAATTCACCT+TGG 0.558480 8.4:-51878117 MS.gene38854:CDS
AGCAGTAACCATAGGTTACA+AGG 0.567358 8.4:-51877454 MS.gene38854:CDS
ACCACAATGCAGCCATGGTA+CGG 0.571593 8.4:+51876882 None:intergenic
AGTTGATGTTGATTTGTTGG+TGG 0.572996 8.4:-51877050 MS.gene38854:CDS
ATAATTGGTGATGTTGGTAA+TGG 0.576650 8.4:-51877517 MS.gene38854:CDS
TGGTCTTTGTAAACATGTTG+TGG 0.582048 8.4:-51876969 MS.gene38854:CDS
GACATTGTTCTAGGGCAATG+AGG 0.593451 8.4:+51877137 None:intergenic
GGCTCAGCAAAAGCATCACA+AGG 0.605591 8.4:-51877756 MS.gene38854:CDS
AATCTATGAGCAGTAACCAT+AGG 0.607974 8.4:-51877462 MS.gene38854:CDS
TACCATGGCTGCATTGTGGT+TGG 0.611964 8.4:-51876879 MS.gene38854:CDS
GTGTGATCAACCTTCAATTG+CGG 0.626857 8.4:+51877181 None:intergenic
GAATATTTGGAACCGTACCA+TGG 0.643141 8.4:-51876894 MS.gene38854:CDS
TCTTTCCTAAATGAGCTGGA+AGG 0.662299 8.4:+51877395 None:intergenic
GCTCAGCAAAAGCATCACAA+GGG 0.717992 8.4:-51877755 MS.gene38854:CDS
ACCGTACCATGGCTGCATTG+TGG 0.722473 8.4:-51876883 MS.gene38854:CDS
ATTGAAGGTTGATCACACAA+CGG 0.761486 8.4:-51877176 MS.gene38854:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGCATTATCAGAATATT+TGG - chr8.4:51878156-51878175 MS.gene38854:CDS 20.0%
!! GAAACATAATTGCATATATA+AGG + chr8.4:51877966-51877985 None:intergenic 20.0%
!!! AAATTTTTCTTTGCTTATGT+CGG + chr8.4:51877133-51877152 None:intergenic 20.0%
!!! AAGAAATATTATTTTGTGAG+TGG - chr8.4:51877522-51877541 MS.gene38854:CDS 20.0%
!!! TTTATCAGAATGTTTTTTCT+TGG + chr8.4:51877583-51877602 None:intergenic 20.0%
! AGATCCATCAATACAAAAAA+AGG + chr8.4:51877360-51877379 None:intergenic 25.0%
! ATGTTTCAATCTAAATGACT+TGG + chr8.4:51877259-51877278 None:intergenic 25.0%
! ATTAACTTTGTTACTGTTCT+TGG + chr8.4:51877714-51877733 None:intergenic 25.0%
! CATAAGCAAAGAAAAATTTG+TGG - chr8.4:51877134-51877153 MS.gene38854:CDS 25.0%
! CATAGAAAATTACTCAGAAA+TGG + chr8.4:51877804-51877823 None:intergenic 25.0%
! GTAACAAAGTTAATAGATTC+TGG - chr8.4:51877720-51877739 MS.gene38854:CDS 25.0%
! TTAACTTTGTTACTGTTCTT+GGG + chr8.4:51877713-51877732 None:intergenic 25.0%
!! AATTTTTCTTTGCTTATGTC+GGG + chr8.4:51877132-51877151 None:intergenic 25.0%
!! ATCTGAAACTGAATATGAAA+TGG - chr8.4:51876804-51876823 MS.gene38854:CDS 25.0%
!! TAAGCTCATTGATAATATCA+TGG + chr8.4:51878136-51878155 None:intergenic 25.0%
!!! GATACCTTTTTTTGTATTGA+TGG - chr8.4:51877353-51877372 MS.gene38854:CDS 25.0%
AACATTTCACTGATCTGATA+AGG - chr8.4:51877637-51877656 MS.gene38854:CDS 30.0%
AAGTTTGTAGTTCTTGATCA+TGG + chr8.4:51877058-51877077 None:intergenic 30.0%
AATCAACATCAACTTGTGTA+TGG + chr8.4:51878007-51878026 None:intergenic 30.0%
ACTCCTCAATTAATCTCAAT+TGG - chr8.4:51876931-51876950 MS.gene38854:CDS 30.0%
ATCAGATCAGTGAAATGTTT+GGG + chr8.4:51877636-51877655 None:intergenic 30.0%
ATTACATTCTAACACAAGCT+TGG - chr8.4:51877286-51877305 MS.gene38854:CDS 30.0%
CAAGAACTACAAACTTTATC+TGG - chr8.4:51877062-51877081 MS.gene38854:CDS 30.0%
TATCAGATCAGTGAAATGTT+TGG + chr8.4:51877637-51877656 None:intergenic 30.0%
TCAAGAAAACTTTCATGATC+TGG + chr8.4:51877417-51877436 None:intergenic 30.0%
TGGTTCAAACATGAAAAAGA+AGG + chr8.4:51877840-51877859 None:intergenic 30.0%
TTGATACTGACATTGTTCTA+GGG + chr8.4:51877937-51877956 None:intergenic 30.0%
! ATTTGTGGAGACAATTTTGT+TGG - chr8.4:51877149-51877168 MS.gene38854:CDS 30.0%
! CTGAGTAATTTTCTATGCTT+AGG - chr8.4:51877807-51877826 MS.gene38854:CDS 30.0%
! TATTTTGTGAGTGGCATAAT+TGG - chr8.4:51877531-51877550 MS.gene38854:CDS 30.0%
! TTTTGTTGAGAAACAGTTCA+TGG - chr8.4:51877193-51877212 MS.gene38854:CDS 30.0%
!! AAGCTTCTTGTTTCACTTTT+CGG + chr8.4:51876909-51876928 None:intergenic 30.0%
!! ACAAGTTGATGTTGATTTGT+TGG - chr8.4:51878010-51878029 MS.gene38854:CDS 30.0%
!! ACTTGAAACTAAGCTTGTTT+TGG - chr8.4:51877485-51877504 MS.gene38854:CDS 30.0%
!! ATAATTGGTGATGTTGGTAA+TGG - chr8.4:51877546-51877565 MS.gene38854:CDS 30.0%
!!! CTTTTTTTGTGTTCTTGCAT+CGG + chr8.4:51876988-51877007 None:intergenic 30.0%
AATCTATGAGCAGTAACCAT+AGG - chr8.4:51877601-51877620 MS.gene38854:CDS 35.0%
AATGGGAAGTGAAAAAGAAG+TGG - chr8.4:51878058-51878077 MS.gene38854:CDS 35.0%
ATAGACGCTCATAGAAGAAA+AGG + chr8.4:51877017-51877036 None:intergenic 35.0%
CGATGCAAGAACACAAAAAA+AGG - chr8.4:51876986-51877005 MS.gene38854:CDS 35.0%
CTGCTAAACTTAACTCTTCT+AGG + chr8.4:51876855-51876874 None:intergenic 35.0%
CTTGATACTGACATTGTTCT+AGG + chr8.4:51877938-51877957 None:intergenic 35.0%
GAAGTGATTGTGCATGAAAT+GGG - chr8.4:51878041-51878060 MS.gene38854:CDS 35.0%
GAGAAACAGTTCATGGAAAT+CGG - chr8.4:51877200-51877219 MS.gene38854:CDS 35.0%
GGACCAATTGAGATTAATTG+AGG + chr8.4:51876937-51876956 None:intergenic 35.0%
TGGTCTTTGTAAACATGTTG+TGG - chr8.4:51878094-51878113 MS.gene38854:CDS 35.0%
! ACACAACGGAATGTGTTTTA+AGG - chr8.4:51877901-51877920 MS.gene38854:CDS 35.0%
! ATTGAAGGTTGATCACACAA+CGG - chr8.4:51877887-51877906 MS.gene38854:CDS 35.0%
! GTTGAAGTTCTTCTTTTCCA+AGG + chr8.4:51876966-51876985 None:intergenic 35.0%
! TCTTCTTTTCCAAGGTGAAT+TGG + chr8.4:51876958-51876977 None:intergenic 35.0%
! TTTTACCTTCCAGCTCATTT+AGG - chr8.4:51877663-51877682 MS.gene38854:CDS 35.0%
!! AGTTGATGTTGATTTGTTGG+TGG - chr8.4:51878013-51878032 MS.gene38854:CDS 35.0%
!! TGGTGTATTTTAGAGATGCT+TGG - chr8.4:51878204-51878223 MS.gene38854:CDS 35.0%
!!! CTGGTTTTTTGTCATCGTTA+GGG + chr8.4:51877398-51877417 None:intergenic 35.0%
!!! GTGAGTTTTGAGAAAGTTGT+GGG - chr8.4:51877744-51877763 MS.gene38854:CDS 35.0%
!!! TCTGGTTTTTTGTCATCGTT+AGG + chr8.4:51877399-51877418 None:intergenic 35.0%
!!! TGAGTTTTGAGAAAGTTGTG+GGG - chr8.4:51877745-51877764 MS.gene38854:CDS 35.0%
!!! TGTGAGTTTTGAGAAAGTTG+TGG - chr8.4:51877743-51877762 MS.gene38854:CDS 35.0%
AGCAGATTGTAGCATCTACA+AGG - chr8.4:51876870-51876889 MS.gene38854:CDS 40.0%
AGCAGTAACCATAGGTTACA+AGG - chr8.4:51877609-51877628 MS.gene38854:CDS 40.0%
GGAAGTGATTGTGCATGAAA+TGG - chr8.4:51878040-51878059 MS.gene38854:CDS 40.0%
GTGTGATCAACCTTCAATTG+CGG + chr8.4:51877885-51877904 None:intergenic 40.0%
TCAATTGGTCCAATTCACCT+TGG - chr8.4:51876946-51876965 MS.gene38854:CDS 40.0%
TCACTCTTTCCTAAATGAGC+TGG + chr8.4:51877675-51877694 None:intergenic 40.0%
TCTAAGGATTCCGCAATTGA+AGG - chr8.4:51877872-51877891 MS.gene38854:CDS 40.0%
TCTTTCCTAAATGAGCTGGA+AGG + chr8.4:51877671-51877690 None:intergenic 40.0%
! CACAAGGGACTTGATTTTGT+TGG - chr8.4:51877323-51877342 MS.gene38854:CDS 40.0%
! GAAGTGGCAATGCTTGTTAA+TGG - chr8.4:51878074-51878093 MS.gene38854:CDS 40.0%
! GAATATTTGGAACCGTACCA+TGG - chr8.4:51878169-51878188 MS.gene38854:CDS 40.0%
!! AGAGCTAGTTCTACTTTGGT+TGG - chr8.4:51878227-51878246 MS.gene38854:CDS 40.0%
!! AGTGGCATAATTGGTGATGT+TGG - chr8.4:51877540-51877559 MS.gene38854:CDS 40.0%
!! GAGCTAGTTCTACTTTGGTT+GGG - chr8.4:51878228-51878247 MS.gene38854:CDS 40.0%
!! TGTTGATTTGTTGGTGGAGA+AGG - chr8.4:51878019-51878038 MS.gene38854:CDS 40.0%
!! TTCACTTTTCGGAGATTGTG+AGG + chr8.4:51876898-51876917 None:intergenic 40.0%
!! TTGGAGAGCTAGTTCTACTT+TGG - chr8.4:51878223-51878242 MS.gene38854:CDS 40.0%
!!! GTTGGATGCTGTTTTCATCA+TGG - chr8.4:51877167-51877186 MS.gene38854:CDS 40.0%
ACCATTTCAAAGCGCGTCTA+AGG - chr8.4:51877856-51877875 MS.gene38854:CDS 45.0%
! GTTTGGGACCTTGTAACCTA+TGG + chr8.4:51877620-51877639 None:intergenic 45.0%
!! GACATTGTTCTAGGGCAATG+AGG + chr8.4:51877929-51877948 None:intergenic 45.0%
!! GCTCAGCAAAAGCATCACAA+GGG - chr8.4:51877308-51877327 MS.gene38854:CDS 45.0%
!! TCCTTAGACGCGCTTTGAAA+TGG + chr8.4:51877860-51877879 None:intergenic 45.0%
ACCACAATGCAGCCATGGTA+CGG + chr8.4:51878184-51878203 None:intergenic 50.0%
TACCATGGCTGCATTGTGGT+TGG - chr8.4:51878184-51878203 MS.gene38854:CDS 50.0%
!! GGCTCAGCAAAAGCATCACA+AGG - chr8.4:51877307-51877326 MS.gene38854:CDS 50.0%
ACCGTACCATGGCTGCATTG+TGG - chr8.4:51878180-51878199 MS.gene38854:CDS 55.0%
CACCAACCACAATGCAGCCA+TGG + chr8.4:51878189-51878208 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 51876772 51878313 51876772 ID=MS.gene38854
chr8.4 mRNA 51876772 51878313 51876772 ID=MS.gene38854.t1;Parent=MS.gene38854
chr8.4 exon 51876772 51878313 51876772 ID=MS.gene38854.t1.exon1;Parent=MS.gene38854.t1
chr8.4 CDS 51876772 51878313 51876772 ID=cds.MS.gene38854.t1;Parent=MS.gene38854.t1
Gene Sequence

>MS.gene38854

ATGGCACATGCTAATACTTCTGCTGCTGCTTTATCTGAAACTGAATATGAAATGGTGAAACAAATAATAGACATTGAAGTCCTAGAAGAGTTAAGTTTAGCAGATTGTAGCATCTACAAGGTTCCTCACAATCTCCGAAAAGTGAAACAAGAAGCTTACACTCCTCAATTAATCTCAATTGGTCCAATTCACCTTGGAAAAGAAGAACTTCAACCGATGCAAGAACACAAAAAAAGGTATTTCCTTTTCTTCTATGAGCGTCTATGTCAATTCAATCAACAATCCATGATCAAGAACTACAAACTTTATCTGGAGAACAAAGAACAAGAAATAAGAAAATGTTATGCAGAGAAATTTCCCGACATAAGCAAAGAAAAATTTGTGGAGACAATTTTGTTGGATGCTGTTTTCATCATGGAACTTTTGTTGAGAAACAGTTCATGGAAATCGGATACATCTAAACATGAACATGAATACAAGCAATCCAAGTCATTTAGATTGAAACATAGTGATGATTACATTCTAACACAAGCTTGGCTCAGCAAAAGCATCACAAGGGACTTGATTTTGTTGGAAAATCAGATACCTTTTTTTGTATTGATGGATCTTTACAAAAATGTCGTCCCTAACGATGACAAAAAACCAGATCATGAAAGTTTTCTTGATCTTGCACTTGAGTATTTTGCATTCTACGATACTCAAAAATCGTCATCACTTGAAACTAAGCTTGTTTTGGATAAGAATCAGACAAAGAAATATTATTTTGTGAGTGGCATAATTGGTGATGTTGGTAATGGCAATTCAGTTTCCAAGAAAAAACATTCTGATAAATCTATGAGCAGTAACCATAGGTTACAAGGTCCCAAACATTTCACTGATCTGATAAGGTTTTTTTACCTTCCAGCTCATTTAGGAAAGAGTGATTGTTCTCATATTTTCCCAAGAACAGTAACAAAGTTAATAGATTCTGGTGTGAGTTTTGAGAAAGTTGTGGGGAGAAGATTACTAGACATAACATTTGAGAAGAAACCATTTCTGAGTAATTTTCTATGCTTAGGTTGTTTACCTTCTTTTTCATGTTTGAACCATTTCAAAGCGCGTCTAAGGATTCCGCAATTGAAGGTTGATCACACAACGGAATGTGTTTTAAGGAACCTCATTGCCCTAGAACAATGTCAGTATCAAGAACAACCTTATATATGCAATTATGTTTCACTTGTTGATTCTCTTATCCATACACAAGTTGATGTTGATTTGTTGGTGGAGAAGGAAGTGATTGTGCATGAAATGGGAAGTGAAAAAGAAGTGGCAATGCTTGTTAATGGTCTTTGTAAACATGTTGTGGTGAATTCAACTTGTTACCATGATATTATCAATGAGCTTAATAAGCATTATCAGAATATTTGGAACCGTACCATGGCTGCATTGTGGTTGGTGTATTTTAGAGATGCTTGGAGAGCTAGTTCTACTTTGGTTGGGATTGCTTTTCTTGTTTACACAGCATTCAACTTTGTACGTCTTGCCAAAATTCTCTTCTACTAG
Protein sequence

>MS.gene38854.t1

MAHANTSAAALSETEYEMVKQIIDIEVLEELSLADCSIYKVPHNLRKVKQEAYTPQLISIGPIHLGKEELQPMQEHKKRYFLFFYERLCQFNQQSMIKNYKLYLENKEQEIRKCYAEKFPDISKEKFVETILLDAVFIMELLLRNSSWKSDTSKHEHEYKQSKSFRLKHSDDYILTQAWLSKSITRDLILLENQIPFFVLMDLYKNVVPNDDKKPDHESFLDLALEYFAFYDTQKSSSLETKLVLDKNQTKKYYFVSGIIGDVGNGNSVSKKKHSDKSMSSNHRLQGPKHFTDLIRFFYLPAHLGKSDCSHIFPRTVTKLIDSGVSFEKVVGRRLLDITFEKKPFLSNFLCLGCLPSFSCLNHFKARLRIPQLKVDHTTECVLRNLIALEQCQYQEQPYICNYVSLVDSLIHTQVDVDLLVEKEVIVHEMGSEKEVAMLVNGLCKHVVVNSTCYHDIINELNKHYQNIWNRTMAALWLVYFRDAWRASSTLVGIAFLVYTAFNFVRLAKILFY