Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055354.t1 | KEH17785.1 | 53.7 | 445 | 15 | 2 | 1 | 254 | 30 | 474 | 2.40E-111 | 411.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055354.t1 | P0C897 | 28.4 | 169 | 108 | 2 | 85 | 240 | 341 | 509 | 6.7e-14 | 79.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055354.t1 | A0A072TW95 | 53.7 | 445 | 15 | 2 | 1 | 254 | 30 | 474 | 1.7e-111 | 411.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene91807 | MS.gene055354 | PPI |
MS.gene022559 | MS.gene055354 | PPI |
MS.gene055354 | MS.gene055359 | PPI |
MS.gene055354 | MS.gene91805 | PPI |
MS.gene019468 | MS.gene055354 | PPI |
MS.gene055354 | MS.gene38854 | PPI |
MS.gene055354 | MS.gene91809 | PPI |
MS.gene055354 | MS.gene061337 | PPI |
MS.gene055354 | MS.gene061334 | PPI |
MS.gene055354 | MS.gene055358 | PPI |
MS.gene055354 | MS.gene055356 | PPI |
MS.gene055354 | MS.gene055357 | PPI |
MS.gene055354 | MS.gene022560 | PPI |
MS.gene055354 | MS.gene022561 | PPI |
MS.gene061336 | MS.gene055354 | PPI |
MS.gene055354 | MS.gene061335 | PPI |
MS.gene055354 | MS.gene91806 | PPI |
MS.gene055356 | MS.gene055354 | PPI |
MS.gene055354 | MS.gene019468 | PPI |
MS.gene055354 | MS.gene022562 | PPI |
MS.gene055354 | MS.gene91808 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055354.t1 | MTR_8g005325 | 83.539 | 243 | 10 | 1 | 42 | 254 | 232 | 474 | 4.57e-142 | 407 |
MS.gene055354.t1 | MTR_8g005325 | 85.714 | 42 | 6 | 0 | 1 | 42 | 30 | 71 | 5.17e-16 | 77.4 |
MS.gene055354.t1 | MTR_8g005235 | 68.595 | 242 | 46 | 1 | 43 | 254 | 203 | 444 | 7.80e-120 | 349 |
MS.gene055354.t1 | MTR_8g005235 | 69.048 | 42 | 13 | 0 | 1 | 42 | 1 | 42 | 4.64e-11 | 62.8 |
MS.gene055354.t1 | MTR_8g006525 | 62.174 | 230 | 53 | 2 | 43 | 246 | 204 | 425 | 4.92e-93 | 280 |
MS.gene055354.t1 | MTR_8g006525 | 77.500 | 40 | 9 | 0 | 3 | 42 | 4 | 43 | 8.14e-13 | 67.8 |
MS.gene055354.t1 | MTR_0209s0060 | 57.205 | 229 | 59 | 3 | 43 | 244 | 206 | 422 | 1.67e-84 | 258 |
MS.gene055354.t1 | MTR_0209s0030 | 57.205 | 229 | 59 | 3 | 43 | 244 | 206 | 422 | 1.67e-84 | 258 |
MS.gene055354.t1 | MTR_8g005295 | 49.180 | 244 | 78 | 4 | 46 | 254 | 280 | 512 | 1.65e-74 | 235 |
MS.gene055354.t1 | MTR_8g005265 | 51.965 | 229 | 74 | 2 | 61 | 253 | 227 | 455 | 2.81e-72 | 228 |
MS.gene055354.t1 | MTR_8g005285 | 51.542 | 227 | 76 | 3 | 61 | 254 | 273 | 498 | 3.60e-72 | 229 |
MS.gene055354.t1 | MTR_8g005225 | 48.918 | 231 | 78 | 3 | 61 | 252 | 229 | 458 | 1.82e-67 | 216 |
MS.gene055354.t1 | MTR_4g112660 | 46.512 | 215 | 77 | 6 | 61 | 251 | 158 | 358 | 3.07e-48 | 163 |
MS.gene055354.t1 | MTR_6g010810 | 35.656 | 244 | 139 | 8 | 18 | 243 | 157 | 400 | 4.18e-35 | 130 |
MS.gene055354.t1 | MTR_6g010920 | 36.620 | 213 | 120 | 6 | 47 | 244 | 190 | 402 | 3.54e-34 | 127 |
MS.gene055354.t1 | MTR_6g009610 | 41.451 | 193 | 95 | 6 | 61 | 236 | 205 | 396 | 2.61e-33 | 125 |
MS.gene055354.t1 | MTR_7g011980 | 37.500 | 200 | 108 | 4 | 62 | 244 | 136 | 335 | 3.27e-33 | 123 |
MS.gene055354.t1 | MTR_3g107590 | 34.855 | 241 | 140 | 5 | 9 | 235 | 168 | 405 | 4.47e-33 | 124 |
MS.gene055354.t1 | MTR_6g011050 | 38.725 | 204 | 111 | 5 | 47 | 236 | 191 | 394 | 4.53e-33 | 124 |
MS.gene055354.t1 | MTR_6g009590 | 37.500 | 208 | 110 | 5 | 47 | 236 | 191 | 396 | 3.71e-32 | 122 |
MS.gene055354.t1 | MTR_0024s0080 | 36.126 | 191 | 107 | 4 | 61 | 236 | 201 | 391 | 7.37e-32 | 121 |
MS.gene055354.t1 | MTR_6g010890 | 34.043 | 235 | 133 | 9 | 31 | 243 | 184 | 418 | 9.84e-32 | 121 |
MS.gene055354.t1 | MTR_6g009170 | 36.041 | 197 | 105 | 5 | 60 | 235 | 209 | 405 | 9.92e-32 | 121 |
MS.gene055354.t1 | MTR_6g011060 | 38.119 | 202 | 105 | 4 | 61 | 242 | 209 | 410 | 1.29e-31 | 120 |
MS.gene055354.t1 | MTR_6g009580 | 37.895 | 190 | 103 | 5 | 61 | 235 | 30 | 219 | 4.12e-30 | 112 |
MS.gene055354.t1 | MTR_6g010850 | 35.678 | 199 | 113 | 4 | 60 | 243 | 143 | 341 | 1.40e-29 | 114 |
MS.gene055354.t1 | MTR_3g079390 | 33.023 | 215 | 128 | 4 | 43 | 243 | 230 | 442 | 1.97e-27 | 109 |
MS.gene055354.t1 | MTR_2g035640 | 33.333 | 195 | 117 | 4 | 61 | 243 | 148 | 341 | 2.24e-27 | 108 |
MS.gene055354.t1 | MTR_7g060310 | 31.304 | 230 | 128 | 6 | 38 | 242 | 255 | 479 | 1.51e-22 | 96.3 |
MS.gene055354.t1 | MTR_5g016570 | 31.100 | 209 | 118 | 5 | 44 | 227 | 296 | 503 | 6.23e-22 | 94.7 |
MS.gene055354.t1 | MTR_5g087580 | 31.034 | 174 | 109 | 2 | 81 | 243 | 34 | 207 | 1.52e-21 | 90.1 |
MS.gene055354.t1 | MTR_6g009600 | 36.029 | 136 | 74 | 3 | 82 | 204 | 15 | 150 | 2.65e-21 | 87.4 |
MS.gene055354.t1 | MTR_7g060840 | 29.327 | 208 | 130 | 4 | 53 | 243 | 218 | 425 | 1.25e-20 | 90.5 |
MS.gene055354.t1 | MTR_7g059520 | 36.585 | 123 | 77 | 1 | 102 | 223 | 31 | 153 | 1.91e-20 | 85.9 |
MS.gene055354.t1 | MTR_7g060080 | 32.353 | 170 | 109 | 3 | 81 | 244 | 20 | 189 | 2.32e-19 | 83.6 |
MS.gene055354.t1 | MTR_7g060260 | 29.762 | 168 | 103 | 2 | 75 | 227 | 236 | 403 | 3.63e-19 | 86.3 |
MS.gene055354.t1 | MTR_0182s0060 | 37.956 | 137 | 83 | 2 | 108 | 243 | 374 | 509 | 4.10e-19 | 86.7 |
MS.gene055354.t1 | MTR_7g059540 | 33.088 | 136 | 90 | 1 | 108 | 242 | 332 | 467 | 4.29e-19 | 86.3 |
MS.gene055354.t1 | MTR_7g059540 | 33.088 | 136 | 90 | 1 | 108 | 242 | 323 | 458 | 4.35e-19 | 86.3 |
MS.gene055354.t1 | MTR_7g060320 | 30.088 | 226 | 121 | 6 | 38 | 227 | 217 | 441 | 6.72e-19 | 85.9 |
MS.gene055354.t1 | MTR_5g086340 | 30.539 | 167 | 105 | 3 | 88 | 243 | 259 | 425 | 8.83e-19 | 85.5 |
MS.gene055354.t1 | MTR_7g446270 | 31.361 | 169 | 101 | 2 | 74 | 227 | 293 | 461 | 1.55e-18 | 84.7 |
MS.gene055354.t1 | MTR_2g041180 | 25.210 | 238 | 157 | 4 | 25 | 244 | 207 | 441 | 2.81e-18 | 84.0 |
MS.gene055354.t1 | MTR_7g059525 | 27.222 | 180 | 116 | 2 | 78 | 242 | 96 | 275 | 3.18e-18 | 82.4 |
MS.gene055354.t1 | MTR_5g086260 | 30.723 | 166 | 103 | 3 | 90 | 243 | 136 | 301 | 2.47e-17 | 80.1 |
MS.gene055354.t1 | MTR_7g059480 | 31.618 | 136 | 92 | 1 | 108 | 242 | 630 | 765 | 8.93e-17 | 79.7 |
MS.gene055354.t1 | MTR_7g060160 | 34.884 | 129 | 82 | 2 | 81 | 207 | 237 | 365 | 2.49e-16 | 78.2 |
MS.gene055354.t1 | MTR_2g036320 | 26.042 | 192 | 107 | 4 | 61 | 219 | 259 | 448 | 6.89e-16 | 77.0 |
MS.gene055354.t1 | MTR_7g060020 | 32.877 | 146 | 95 | 3 | 81 | 224 | 265 | 409 | 9.96e-16 | 76.3 |
MS.gene055354.t1 | MTR_8g042830 | 27.168 | 173 | 106 | 2 | 90 | 242 | 233 | 405 | 1.79e-15 | 75.5 |
MS.gene055354.t1 | MTR_7g060115 | 28.837 | 215 | 124 | 4 | 22 | 208 | 201 | 414 | 4.35e-15 | 74.7 |
MS.gene055354.t1 | MTR_8g042170 | 29.448 | 163 | 96 | 4 | 98 | 243 | 290 | 450 | 6.10e-15 | 74.3 |
MS.gene055354.t1 | MTR_3g107600 | 29.319 | 191 | 95 | 5 | 61 | 236 | 406 | 571 | 6.72e-15 | 74.3 |
MS.gene055354.t1 | MTR_7g059510 | 27.230 | 213 | 127 | 5 | 38 | 223 | 187 | 398 | 1.52e-14 | 72.8 |
MS.gene055354.t1 | MTR_7g059810 | 28.634 | 227 | 134 | 4 | 28 | 227 | 196 | 421 | 6.07e-14 | 71.2 |
MS.gene055354.t1 | MTR_8g042400 | 30.303 | 165 | 96 | 5 | 96 | 243 | 175 | 337 | 8.41e-14 | 70.5 |
MS.gene055354.t1 | MTR_8g042070 | 33.557 | 149 | 80 | 6 | 96 | 227 | 94 | 240 | 1.07e-13 | 69.3 |
MS.gene055354.t1 | MTR_7g060220 | 35.537 | 121 | 76 | 2 | 108 | 227 | 294 | 413 | 1.10e-13 | 70.5 |
MS.gene055354.t1 | MTR_7g060370 | 31.008 | 129 | 87 | 2 | 100 | 227 | 320 | 447 | 3.85e-13 | 68.9 |
MS.gene055354.t1 | MTR_4g009620 | 28.767 | 146 | 102 | 2 | 98 | 242 | 396 | 540 | 5.72e-13 | 68.6 |
MS.gene055354.t1 | MTR_4g009340 | 30.216 | 139 | 95 | 2 | 91 | 228 | 391 | 528 | 5.92e-13 | 68.6 |
MS.gene055354.t1 | MTR_4g009590 | 27.193 | 228 | 155 | 5 | 21 | 242 | 320 | 542 | 1.04e-12 | 67.8 |
MS.gene055354.t1 | MTR_7g017620 | 27.273 | 165 | 107 | 4 | 91 | 243 | 369 | 532 | 2.19e-12 | 66.6 |
MS.gene055354.t1 | MTR_7g060330 | 26.901 | 171 | 109 | 3 | 72 | 227 | 295 | 464 | 2.87e-12 | 66.2 |
MS.gene055354.t1 | MTR_2g036310 | 28.788 | 132 | 92 | 1 | 113 | 242 | 19 | 150 | 4.75e-12 | 62.8 |
MS.gene055354.t1 | MTR_6g010830 | 41.860 | 86 | 48 | 2 | 128 | 213 | 1 | 84 | 2.56e-11 | 60.1 |
MS.gene055354.t1 | MTR_1g040690 | 38.843 | 121 | 70 | 4 | 100 | 219 | 295 | 412 | 3.72e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055354.t1 | AT2G28580 | 33.645 | 214 | 122 | 3 | 50 | 243 | 227 | 440 | 3.61e-36 | 134 |
MS.gene055354.t1 | AT2G28580 | 33.645 | 214 | 122 | 3 | 50 | 243 | 278 | 491 | 5.45e-36 | 134 |
MS.gene055354.t1 | AT2G28580 | 33.645 | 214 | 122 | 3 | 50 | 243 | 292 | 505 | 6.80e-36 | 134 |
MS.gene055354.t1 | AT2G28580 | 33.645 | 214 | 122 | 3 | 50 | 243 | 295 | 508 | 6.86e-36 | 134 |
MS.gene055354.t1 | AT2G28580 | 33.645 | 214 | 122 | 3 | 50 | 243 | 309 | 522 | 7.56e-36 | 134 |
MS.gene055354.t1 | AT2G44930 | 34.579 | 214 | 122 | 3 | 50 | 245 | 277 | 490 | 1.88e-33 | 127 |
MS.gene055354.t1 | AT1G67150 | 31.313 | 198 | 118 | 5 | 61 | 243 | 201 | 395 | 1.72e-27 | 109 |
MS.gene055354.t1 | AT1G67150 | 31.313 | 198 | 118 | 5 | 61 | 243 | 201 | 395 | 1.72e-27 | 109 |
MS.gene055354.t1 | AT1G67150 | 30.102 | 196 | 123 | 4 | 61 | 243 | 205 | 399 | 2.30e-27 | 109 |
MS.gene055354.t1 | AT1G67150 | 30.102 | 196 | 119 | 5 | 63 | 243 | 160 | 352 | 2.41e-25 | 102 |
MS.gene055354.t1 | AT3G50140 | 29.583 | 240 | 142 | 6 | 32 | 244 | 286 | 525 | 7.98e-25 | 103 |
MS.gene055354.t1 | AT3G50170 | 32.948 | 173 | 104 | 2 | 83 | 243 | 352 | 524 | 7.87e-24 | 100 |
MS.gene055354.t1 | AT5G11290 | 27.461 | 193 | 127 | 3 | 61 | 242 | 152 | 342 | 1.92e-23 | 97.4 |
MS.gene055354.t1 | AT3G60470 | 31.250 | 224 | 128 | 6 | 32 | 243 | 318 | 527 | 3.14e-23 | 98.6 |
MS.gene055354.t1 | AT5G11290 | 27.461 | 193 | 127 | 3 | 61 | 242 | 221 | 411 | 3.75e-23 | 97.8 |
MS.gene055354.t1 | AT3G50150 | 27.586 | 232 | 149 | 3 | 32 | 244 | 264 | 495 | 4.55e-23 | 97.8 |
MS.gene055354.t1 | AT3G50160 | 30.198 | 202 | 126 | 3 | 57 | 243 | 285 | 486 | 5.68e-23 | 97.8 |
MS.gene055354.t1 | AT3G50120 | 32.778 | 180 | 108 | 3 | 76 | 243 | 338 | 516 | 1.88e-22 | 96.3 |
MS.gene055354.t1 | AT2G36430 | 30.319 | 188 | 113 | 5 | 58 | 227 | 232 | 419 | 2.07e-22 | 95.9 |
MS.gene055354.t1 | AT4G31980 | 25.676 | 222 | 139 | 7 | 32 | 235 | 449 | 662 | 3.48e-19 | 87.0 |
MS.gene055354.t1 | AT3G50130 | 31.902 | 163 | 98 | 3 | 77 | 227 | 372 | 533 | 1.60e-18 | 85.1 |
MS.gene055354.t1 | AT1G65985 | 32.948 | 173 | 111 | 4 | 58 | 227 | 255 | 425 | 5.58e-18 | 83.2 |
MS.gene055354.t1 | AT1G65985 | 32.948 | 173 | 111 | 4 | 58 | 227 | 255 | 425 | 5.58e-18 | 83.2 |
MS.gene055354.t1 | AT3G02645 | 29.936 | 157 | 97 | 2 | 85 | 228 | 341 | 497 | 3.47e-17 | 80.9 |
MS.gene055354.t1 | AT3G50190 | 26.556 | 241 | 148 | 5 | 32 | 243 | 238 | 478 | 1.17e-16 | 79.3 |
MS.gene055354.t1 | AT3G50180 | 27.907 | 172 | 108 | 3 | 88 | 243 | 402 | 573 | 1.70e-16 | 79.0 |
MS.gene055354.t1 | AT2G28580 | 32.374 | 139 | 74 | 3 | 50 | 168 | 309 | 447 | 8.81e-16 | 76.6 |
MS.gene055354.t1 | AT5G22560 | 25.150 | 167 | 112 | 2 | 91 | 244 | 337 | 503 | 5.14e-12 | 65.9 |
MS.gene055354.t1 | AT3G47210 | 28.931 | 159 | 88 | 3 | 61 | 197 | 279 | 434 | 6.04e-12 | 65.5 |
Find 35 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGCAAGCTCTATAATTTC+TGG | 0.197499 | 8.2:-83538906 | None:intergenic |
AAGCCACTCTACATCATCTT+TGG | 0.315095 | 8.2:-83539896 | None:intergenic |
TAGAATAGTTATTCCAACTA+TGG | 0.337812 | 8.2:-83540127 | None:intergenic |
AGAAATTGTGGTGCACGAAC+TGG | 0.344025 | 8.2:+83539927 | MS.gene055354:CDS |
CTACAACAATGAGTGGAAAA+AGG | 0.350659 | 8.2:+83540050 | MS.gene055354:CDS |
GACATTGCTCATAAGCGATT+AGG | 0.379899 | 8.2:-83539813 | None:intergenic |
TTCCCCTTCAAAAGAATAGT+AGG | 0.414575 | 8.2:-83538957 | None:intergenic |
AGAAGCAGTTCTACCATAGT+TGG | 0.425807 | 8.2:+83540114 | MS.gene055354:CDS |
TTGCAAGCTCTATAATTTCT+GGG | 0.432094 | 8.2:-83538905 | None:intergenic |
TAGGTTTCTAAGAATACATT+CGG | 0.437762 | 8.2:-83539794 | None:intergenic |
TTGCAAATGTAAGGCTCGTC+AGG | 0.438333 | 8.2:-83539841 | None:intergenic |
GGGTTTATTTCCGTGATCCT+TGG | 0.441089 | 8.2:+83540091 | MS.gene055354:CDS |
GAAACATAATTGCAAATGTA+AGG | 0.443461 | 8.2:-83539850 | None:intergenic |
CTGGGATGTTGATTACTTGT+TGG | 0.479729 | 8.2:-83538887 | None:intergenic |
AGAAAGAGTGTTTGATGCTA+AGG | 0.486233 | 8.2:+83539590 | MS.gene055354:CDS |
CATTAAGATCATCTATAAGT+TGG | 0.488259 | 8.2:-83540023 | None:intergenic |
TAAGTTTGAGTCAAAGAAGT+GGG | 0.505770 | 8.2:+83539489 | MS.gene055354:CDS |
GCAACAAAGTTGAATGAAGC+TGG | 0.509899 | 8.2:+83539616 | MS.gene055354:CDS |
AGGCCATGGGTACATTAGGA+TGG | 0.524745 | 8.2:+83540070 | MS.gene055354:CDS |
TTGTCACAACATGTTTGCAT+AGG | 0.537842 | 8.2:-83539984 | None:intergenic |
GAAATTGTGGTGCACGAACT+GGG | 0.542527 | 8.2:+83539928 | MS.gene055354:CDS |
GGCCATGGGTACATTAGGAT+GGG | 0.550854 | 8.2:+83540071 | MS.gene055354:CDS |
TAAGAATACATTCGGTTGTG+TGG | 0.555539 | 8.2:-83539786 | None:intergenic |
GCCTCAATGTTGTATCTACA+AGG | 0.565942 | 8.2:+83538932 | MS.gene055354:CDS |
GTAAGTTTGAGTCAAAGAAG+TGG | 0.573446 | 8.2:+83539488 | MS.gene055354:CDS |
AGCTGGTATAAGCTTTGAGA+AGG | 0.574187 | 8.2:+83539633 | MS.gene055354:CDS |
AACTGCTTCTCCAAGGATCA+CGG | 0.580850 | 8.2:-83540101 | None:intergenic |
ATGAACACTACAACAATGAG+TGG | 0.591797 | 8.2:+83540043 | MS.gene055354:CDS |
AACCCATCCTAATGTACCCA+TGG | 0.599030 | 8.2:-83540073 | None:intergenic |
ATGGTAGAACTGCTTCTCCA+AGG | 0.614072 | 8.2:-83540108 | None:intergenic |
GCTTGTTGAGAAAGAAATTG+TGG | 0.649654 | 8.2:+83539915 | MS.gene055354:CDS |
AAACCAAAGATGATGTAGAG+TGG | 0.657208 | 8.2:+83539893 | MS.gene055354:CDS |
AAATTATAGAGCTTGCAACA+TGG | 0.657399 | 8.2:+83538910 | MS.gene055354:CDS |
GCACGAACTGGGAAGCGACG+AGG | 0.690737 | 8.2:+83539939 | MS.gene055354:CDS |
ACCTTGTAGATACAACATTG+AGG | 0.707204 | 8.2:-83538933 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAGATATTTTCATTTTTTT+TGG | + | chr8.2:83539068-83539087 | MS.gene055354:intron | 10.0% |
!!! | ATTAAATCATTTTTTTTTCG+AGG | - | chr8.2:83539099-83539118 | None:intergenic | 15.0% |
!!! | TAATATCAGAAAAATTCTTT+TGG | - | chr8.2:83539173-83539192 | None:intergenic | 15.0% |
!! | TTTAAGAGAAGCAAAAAAAT+GGG | + | chr8.2:83539251-83539270 | MS.gene055354:intron | 20.0% |
!!! | AAAAATTCTTTTGGTAACAA+TGG | - | chr8.2:83539164-83539183 | None:intergenic | 20.0% |
!!! | TTTTAAGAGAAGCAAAAAAA+TGG | + | chr8.2:83539250-83539269 | MS.gene055354:intron | 20.0% |
! | CATTAAGATCATCTATAAGT+TGG | - | chr8.2:83540026-83540045 | None:intergenic | 25.0% |
! | GAAACATAATTGCAAATGTA+AGG | - | chr8.2:83539853-83539872 | None:intergenic | 25.0% |
! | TAGAATAGTTATTCCAACTA+TGG | - | chr8.2:83540130-83540149 | None:intergenic | 25.0% |
!! | AGTTTTTCTAACACATACAT+TGG | - | chr8.2:83539358-83539377 | None:intergenic | 25.0% |
!! | TAGGTTTCTAAGAATACATT+CGG | - | chr8.2:83539797-83539816 | None:intergenic | 25.0% |
AAATTATAGAGCTTGCAACA+TGG | + | chr8.2:83538910-83538929 | MS.gene055354:CDS | 30.0% | |
AGAAAAAACCTTTGTTGAGT+TGG | + | chr8.2:83539689-83539708 | MS.gene055354:intron | 30.0% | |
CTCAAACTTTATGTCAAGTA+AGG | - | chr8.2:83539671-83539690 | None:intergenic | 30.0% | |
GCAATGACAAAAAACACAAA+TGG | + | chr8.2:83539398-83539417 | MS.gene055354:intron | 30.0% | |
TAAGTTTGAGTCAAAGAAGT+GGG | + | chr8.2:83539489-83539508 | MS.gene055354:CDS | 30.0% | |
TTGCAAGCTCTATAATTTCT+GGG | - | chr8.2:83538908-83538927 | None:intergenic | 30.0% | |
! | GTTCCTACTATTCTTTTGAA+GGG | + | chr8.2:83538954-83538973 | MS.gene055354:CDS | 30.0% |
! | GTTTGTTGACATGATATTGT+TGG | + | chr8.2:83539203-83539222 | MS.gene055354:intron | 30.0% |
! | TGCTTAGTGCTAATTTTCAT+GGG | - | chr8.2:83539559-83539578 | None:intergenic | 30.0% |
!! | TTCCTACTATTCTTTTGAAG+GGG | + | chr8.2:83538955-83538974 | MS.gene055354:CDS | 30.0% |
!! | TTGAGTTGGTTTCTTTGTTT+AGG | + | chr8.2:83539703-83539722 | MS.gene055354:intron | 30.0% |
!!! | TTGTGTTTTTTGTCATTGCT+TGG | - | chr8.2:83539397-83539416 | None:intergenic | 30.0% |
!!! | TTTTTGTTGTTATGGTGGAT+CGG | - | chr8.2:83539022-83539041 | None:intergenic | 30.0% |
AAACCAAAGATGATGTAGAG+TGG | + | chr8.2:83539893-83539912 | MS.gene055354:CDS | 35.0% | |
ACACCTCTACTCATATCAAT+TGG | + | chr8.2:83538995-83539014 | MS.gene055354:intron | 35.0% | |
ACCTTGTAGATACAACATTG+AGG | - | chr8.2:83538936-83538955 | None:intergenic | 35.0% | |
ATGAACACTACAACAATGAG+TGG | + | chr8.2:83540043-83540062 | MS.gene055354:CDS | 35.0% | |
CAAAGAAACCAACTCAACAA+AGG | - | chr8.2:83539700-83539719 | None:intergenic | 35.0% | |
CCATAACAACAAAAAACTCG+AGG | + | chr8.2:83539027-83539046 | MS.gene055354:intron | 35.0% | |
CTACAACAATGAGTGGAAAA+AGG | + | chr8.2:83540050-83540069 | MS.gene055354:CDS | 35.0% | |
GTAAGTTTGAGTCAAAGAAG+TGG | + | chr8.2:83539488-83539507 | MS.gene055354:CDS | 35.0% | |
GTTGCAAGCTCTATAATTTC+TGG | - | chr8.2:83538909-83538928 | None:intergenic | 35.0% | |
TAAGAATACATTCGGTTGTG+TGG | - | chr8.2:83539789-83539808 | None:intergenic | 35.0% | |
TCATGTCAACAAACTGTTCA+TGG | - | chr8.2:83539197-83539216 | None:intergenic | 35.0% | |
TTCCCCTTCAAAAGAATAGT+AGG | - | chr8.2:83538960-83538979 | None:intergenic | 35.0% | |
TTGTCACAACATGTTTGCAT+AGG | - | chr8.2:83539987-83540006 | None:intergenic | 35.0% | |
! | GCTTAGTGCTAATTTTCATG+GGG | - | chr8.2:83539558-83539577 | None:intergenic | 35.0% |
! | GCTTGTTGAGAAAGAAATTG+TGG | + | chr8.2:83539915-83539934 | MS.gene055354:CDS | 35.0% |
! | GGTTCCTACTATTCTTTTGA+AGG | + | chr8.2:83538953-83538972 | MS.gene055354:CDS | 35.0% |
! | GTGCTTAGTGCTAATTTTCA+TGG | - | chr8.2:83539560-83539579 | None:intergenic | 35.0% |
!! | AGAAAGAGTGTTTGATGCTA+AGG | + | chr8.2:83539590-83539609 | MS.gene055354:CDS | 35.0% |
!! | TGTGGTCTACTTTTAACTGT+GGG | - | chr8.2:83539771-83539790 | None:intergenic | 35.0% |
!!! | CCTCGAGTTTTTTGTTGTTA+TGG | - | chr8.2:83539030-83539049 | None:intergenic | 35.0% |
!!! | CGAGTTTTTTGTTGTTATGG+TGG | - | chr8.2:83539027-83539046 | None:intergenic | 35.0% |
AAAAAGGCCATGGGTACATT+AGG | + | chr8.2:83540066-83540085 | MS.gene055354:CDS | 40.0% | |
AAGCCACTCTACATCATCTT+TGG | - | chr8.2:83539899-83539918 | None:intergenic | 40.0% | |
AATGAGTGGAAAAAGGCCAT+GGG | + | chr8.2:83540057-83540076 | MS.gene055354:CDS | 40.0% | |
AGAAGCAGTTCTACCATAGT+TGG | + | chr8.2:83540114-83540133 | MS.gene055354:CDS | 40.0% | |
GAAGATGATTCATGCTGAAG+AGG | - | chr8.2:83539463-83539482 | None:intergenic | 40.0% | |
GACATTGCTCATAAGCGATT+AGG | - | chr8.2:83539816-83539835 | None:intergenic | 40.0% | |
GCAACAAAGTTGAATGAAGC+TGG | + | chr8.2:83539616-83539635 | MS.gene055354:CDS | 40.0% | |
GCCTCAATGTTGTATCTACA+AGG | + | chr8.2:83538932-83538951 | MS.gene055354:CDS | 40.0% | |
GCTTTAACACACTTGCAACA+TGG | - | chr8.2:83539736-83539755 | None:intergenic | 40.0% | |
GGTCCAATTGATATGAGTAG+AGG | - | chr8.2:83539001-83539020 | None:intergenic | 40.0% | |
! | CTGGGATGTTGATTACTTGT+TGG | - | chr8.2:83538890-83538909 | None:intergenic | 40.0% |
!! | AGCTGGTATAAGCTTTGAGA+AGG | + | chr8.2:83539633-83539652 | MS.gene055354:CDS | 40.0% |
!! | GTGTGGTCTACTTTTAACTG+TGG | - | chr8.2:83539772-83539791 | None:intergenic | 40.0% |
!! | TCTTTTGAAGGGGAAAGAAG+AGG | + | chr8.2:83538965-83538984 | MS.gene055354:CDS | 40.0% |
AACCCATCCTAATGTACCCA+TGG | - | chr8.2:83540076-83540095 | None:intergenic | 45.0% | |
AACTGCTTCTCCAAGGATCA+CGG | - | chr8.2:83540104-83540123 | None:intergenic | 45.0% | |
AGAAATTGTGGTGCACGAAC+TGG | + | chr8.2:83539927-83539946 | MS.gene055354:CDS | 45.0% | |
ATGGTAGAACTGCTTCTCCA+AGG | - | chr8.2:83540111-83540130 | None:intergenic | 45.0% | |
CAATGAGTGGAAAAAGGCCA+TGG | + | chr8.2:83540056-83540075 | MS.gene055354:CDS | 45.0% | |
GAAATTGTGGTGCACGAACT+GGG | + | chr8.2:83539928-83539947 | MS.gene055354:CDS | 45.0% | |
GGGTTTATTTCCGTGATCCT+TGG | + | chr8.2:83540091-83540110 | MS.gene055354:CDS | 45.0% | |
GTTGGATGTTGCGTTCATCA+TGG | + | chr8.2:83539221-83539240 | MS.gene055354:intron | 45.0% | |
TTGCAAATGTAAGGCTCGTC+AGG | - | chr8.2:83539844-83539863 | None:intergenic | 45.0% | |
AGGCCATGGGTACATTAGGA+TGG | + | chr8.2:83540070-83540089 | MS.gene055354:CDS | 50.0% | |
GGCCATGGGTACATTAGGAT+GGG | + | chr8.2:83540071-83540090 | MS.gene055354:CDS | 50.0% | |
GCACGAACTGGGAAGCGACG+AGG | + | chr8.2:83539939-83539958 | MS.gene055354:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 83538861 | 83540197 | 83538861 | ID=MS.gene055354 |
chr8.2 | mRNA | 83538861 | 83540197 | 83538861 | ID=MS.gene055354.t1;Parent=MS.gene055354 |
chr8.2 | exon | 83538861 | 83538986 | 83538861 | ID=MS.gene055354.t1.exon1;Parent=MS.gene055354.t1 |
chr8.2 | CDS | 83538861 | 83538986 | 83538861 | ID=cds.MS.gene055354.t1;Parent=MS.gene055354.t1 |
chr8.2 | exon | 83539469 | 83539654 | 83539469 | ID=MS.gene055354.t1.exon2;Parent=MS.gene055354.t1 |
chr8.2 | CDS | 83539469 | 83539654 | 83539469 | ID=cds.MS.gene055354.t1;Parent=MS.gene055354.t1 |
chr8.2 | exon | 83539745 | 83540197 | 83539745 | ID=MS.gene055354.t1.exon3;Parent=MS.gene055354.t1 |
chr8.2 | CDS | 83539745 | 83540197 | 83539745 | ID=cds.MS.gene055354.t1;Parent=MS.gene055354.t1 |
Gene Sequence |
Protein sequence |