Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020578.t1 | XP_013450065.1 | 100 | 163 | 0 | 0 | 1 | 163 | 1 | 163 | 1.00E-62 | 249.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020578.t1 | O65743 | 95.1 | 163 | 7 | 1 | 1 | 162 | 1 | 163 | 3.6e-61 | 235.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020578.t1 | I3SKQ8 | 100.0 | 163 | 0 | 0 | 1 | 163 | 1 | 163 | 7.2e-63 | 249.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24639 | MS.gene020578 | PPI |
| MS.gene020578 | MS.gene06433 | PPI |
| MS.gene034951 | MS.gene020578 | PPI |
| MS.gene020578 | MS.gene007334 | PPI |
| MS.gene020578 | MS.gene007335 | PPI |
| MS.gene049306 | MS.gene020578 | PPI |
| MS.gene07704 | MS.gene020578 | PPI |
| MS.gene020578 | MS.gene47371 | PPI |
| MS.gene007336 | MS.gene020578 | PPI |
| MS.gene020578 | MS.gene30990 | PPI |
| MS.gene020578 | MS.gene065297 | PPI |
| MS.gene020578 | MS.gene007607 | PPI |
| MS.gene020578 | MS.gene007610 | PPI |
| MS.gene020578 | MS.gene020577 | PPI |
| MS.gene013335 | MS.gene020578 | PPI |
| MS.gene23040 | MS.gene020578 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020578.t1 | MTR_7g103320 | 100.000 | 163 | 0 | 0 | 1 | 163 | 1 | 163 | 5.20e-117 | 328 |
| MS.gene020578.t1 | MTR_7g103320 | 100.000 | 163 | 0 | 0 | 1 | 163 | 1 | 163 | 5.20e-117 | 328 |
| MS.gene020578.t1 | MTR_7g103320 | 100.000 | 163 | 0 | 0 | 1 | 163 | 1 | 163 | 5.20e-117 | 328 |
| MS.gene020578.t1 | MTR_1g061670 | 95.333 | 150 | 6 | 1 | 1 | 149 | 1 | 150 | 7.69e-90 | 259 |
| MS.gene020578.t1 | MTR_4g104930 | 79.630 | 54 | 10 | 1 | 43 | 96 | 13 | 65 | 2.18e-23 | 87.8 |
| MS.gene020578.t1 | MTR_4g055270 | 36.842 | 95 | 58 | 1 | 3 | 95 | 1 | 95 | 2.81e-18 | 77.4 |
| MS.gene020578.t1 | MTR_2g084925 | 34.409 | 93 | 59 | 1 | 3 | 93 | 1 | 93 | 8.49e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020578.t1 | AT2G36620 | 89.172 | 157 | 16 | 1 | 1 | 156 | 1 | 157 | 1.94e-88 | 255 |
| MS.gene020578.t1 | AT3G53020 | 89.933 | 149 | 14 | 1 | 1 | 149 | 1 | 148 | 1.08e-83 | 243 |
| MS.gene020578.t1 | AT2G44860 | 36.719 | 128 | 68 | 5 | 3 | 126 | 1 | 119 | 8.77e-18 | 75.9 |
| MS.gene020578.t1 | AT2G44860 | 36.719 | 128 | 68 | 5 | 3 | 126 | 1 | 119 | 8.77e-18 | 75.9 |
Find 50 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGCTACTTCGGCTTTCT+TGG | 0.236901 | 7.2:+9442749 | None:intergenic |
| CCTAAAATGGGCGGTGGTGG+TGG | 0.259183 | 7.2:-9442672 | MS.gene020578:CDS |
| TATGCCCAAGGGTCCTAAAA+TGG | 0.286938 | 7.2:-9442685 | MS.gene020578:CDS |
| CTTGGCTTTCTTCTCATCCT+TGG | 0.290844 | 7.2:+9442767 | None:intergenic |
| ATCTCGAACCTCGGGCTTCT+CGG | 0.307520 | 7.2:+9443039 | None:intergenic |
| CTTGTGCTGCTTTCTGTACA+TGG | 0.329814 | 7.2:+9443396 | None:intergenic |
| GGACCTGGAGTATGGCTTCT+TGG | 0.357806 | 7.2:+9443102 | None:intergenic |
| GCAGTCCATGTGAGCTTTGA+AGG | 0.357906 | 7.2:+9443418 | None:intergenic |
| GAAAGCCGAAGTAGCATCTA+AGG | 0.360444 | 7.2:-9442745 | MS.gene020578:CDS |
| ATAAATCTGATCCCTCTTCC+TGG | 0.395884 | 7.2:+9443649 | None:intergenic |
| GCATCTAAGGCACAAAAGTC+AGG | 0.405098 | 7.2:-9442732 | MS.gene020578:CDS |
| CCAACAATGGACCTGGAGTA+TGG | 0.414209 | 7.2:+9443094 | None:intergenic |
| ATTTATTCGTAGTGATTCTC+AGG | 0.428494 | 7.2:-9443632 | MS.gene020578:intron |
| CCTAGCAGCATCTCGAACCT+CGG | 0.438375 | 7.2:+9443030 | None:intergenic |
| GGTCCTAAAATGGGCGGTGG+TGG | 0.445895 | 7.2:-9442675 | MS.gene020578:CDS |
| TTGTGAACTCAAAATGTAAG+AGG | 0.457107 | 7.2:-9443462 | MS.gene020578:CDS |
| TTGAAGGCTTCAACTTGTTG+TGG | 0.467148 | 7.2:+9443434 | None:intergenic |
| GCAAAGATTTACCCAGGAAG+AGG | 0.473275 | 7.2:-9443661 | MS.gene020578:CDS |
| ATGCCCAAGGGTCCTAAAAT+GGG | 0.479062 | 7.2:-9442684 | MS.gene020578:CDS |
| CTGCTAGGGAAGCTGCTCTT+CGG | 0.488937 | 7.2:-9443015 | MS.gene020578:intron |
| CCATACTCCAGGTCCATTGT+TGG | 0.499932 | 7.2:-9443094 | MS.gene020578:CDS |
| TCAATCCCGCAGTGAAATCA+AGG | 0.506619 | 7.2:-9442805 | MS.gene020578:intron |
| CTAGCAGCATCTCGAACCTC+GGG | 0.515819 | 7.2:+9443031 | None:intergenic |
| CTAAAATGGGCGGTGGTGGT+GGG | 0.525722 | 7.2:-9442671 | MS.gene020578:CDS |
| CTCAAGAAGCTGTGAAGAAG+AGG | 0.530274 | 7.2:-9443135 | MS.gene020578:CDS |
| CCGAGGTTCGAGATGCTGCT+AGG | 0.531808 | 7.2:-9443030 | MS.gene020578:CDS |
| CGAGGTTCGAGATGCTGCTA+GGG | 0.538000 | 7.2:-9443029 | MS.gene020578:CDS |
| TTGTGCCTTAGATGCTACTT+CGG | 0.538791 | 7.2:+9442740 | None:intergenic |
| AGGGAAAGGCAATGTTCAGA+AGG | 0.551183 | 7.2:-9442712 | MS.gene020578:CDS |
| CCTGGAGTATGGCTTCTTGG+TGG | 0.554085 | 7.2:+9443105 | None:intergenic |
| TAAATCTGATCCCTCTTCCT+GGG | 0.554260 | 7.2:+9443650 | None:intergenic |
| TGAAGCCTTCAAAGCTCACA+TGG | 0.563280 | 7.2:-9443423 | MS.gene020578:CDS |
| TTCAAGTGTAGCACCAACAA+TGG | 0.581573 | 7.2:+9443081 | None:intergenic |
| AAGGGTCCTAAAATGGGCGG+TGG | 0.584819 | 7.2:-9442678 | MS.gene020578:CDS |
| TCAGAAGGGTGCTATGCCCA+AGG | 0.589737 | 7.2:-9442697 | MS.gene020578:CDS |
| CAAAGATTTACCCAGGAAGA+GGG | 0.595056 | 7.2:-9443660 | MS.gene020578:CDS |
| ACTGAACTCTGTCGATTCAG+TGG | 0.599671 | 7.2:-9443685 | MS.gene020578:CDS |
| CCACCAAGAAGCCATACTCC+AGG | 0.600767 | 7.2:-9443105 | MS.gene020578:CDS |
| AAGGCACAAAAGTCAGGGAA+AGG | 0.600921 | 7.2:-9442726 | MS.gene020578:CDS |
| CAGAAGGGTGCTATGCCCAA+GGG | 0.602938 | 7.2:-9442696 | MS.gene020578:CDS |
| AGTATGGCTTCTTGGTGGCA+CGG | 0.604625 | 7.2:+9443110 | None:intergenic |
| CATCTAAGGCACAAAAGTCA+GGG | 0.612277 | 7.2:-9442731 | MS.gene020578:CDS |
| TGTAGCACCAACAATGGACC+TGG | 0.616016 | 7.2:+9443087 | None:intergenic |
| GAAAAGAACCGAGAAGCCCG+AGG | 0.642434 | 7.2:-9443047 | MS.gene020578:CDS |
| AGTGGCGCAAAGATTTACCC+AGG | 0.643624 | 7.2:-9443667 | MS.gene020578:CDS |
| GTACAGAAAGCAGCACAAGA+AGG | 0.650232 | 7.2:-9443392 | MS.gene020578:intron |
| CCCAAGGGTCCTAAAATGGG+CGG | 0.653433 | 7.2:-9442681 | MS.gene020578:CDS |
| GGGAAAGGCAATGTTCAGAA+GGG | 0.656870 | 7.2:-9442711 | MS.gene020578:CDS |
| CCCGCAGTGAAATCAAGGAG+AGG | 0.678239 | 7.2:-9442800 | MS.gene020578:intron |
| GGAGAGGATAAAGAAAACCA+AGG | 0.682479 | 7.2:-9442784 | MS.gene020578:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTAGTTTTATTGATATA+AGG | - | chr7.2:9443397-9443416 | MS.gene020578:CDS | 15.0% |
| !!! | GTTTTTTTTATTGTTTTTAC+AGG | - | chr7.2:9443423-9443442 | MS.gene020578:CDS | 15.0% |
| !! | TTAAAAATTGAAATTGCACA+AGG | + | chr7.2:9443058-9443077 | None:intergenic | 20.0% |
| !! | TTTGATGGAATGTAAAATTT+CGG | - | chr7.2:9442807-9442826 | MS.gene020578:intron | 20.0% |
| !!! | AGATTTAGTTTTATTGTACT+TGG | - | chr7.2:9442781-9442800 | MS.gene020578:CDS | 20.0% |
| !!! | CAAAATTCTAAAAATCTGTT+TGG | - | chr7.2:9442878-9442897 | MS.gene020578:intron | 20.0% |
| !!! | CAATTTCAATTTTTAATGAG+TGG | - | chr7.2:9443062-9443081 | MS.gene020578:CDS | 20.0% |
| !!! | GATTTAGTTTTATTGTACTT+GGG | - | chr7.2:9442782-9442801 | MS.gene020578:CDS | 20.0% |
| !!! | TGGAAATTTAGATTTGTTTT+TGG | - | chr7.2:9443023-9443042 | MS.gene020578:CDS | 20.0% |
| !!! | TGTATTTTGATTGAATTAGT+GGG | - | chr7.2:9443145-9443164 | MS.gene020578:CDS | 20.0% |
| !!! | TTGTATTTTGATTGAATTAG+TGG | - | chr7.2:9443144-9443163 | MS.gene020578:CDS | 20.0% |
| ! | AAAACTGAATGTGTAAATGA+TGG | + | chr7.2:9442701-9442720 | None:intergenic | 25.0% |
| ! | AAATCAACCAAAGCTATAAT+GGG | + | chr7.2:9442970-9442989 | None:intergenic | 25.0% |
| ! | AGTAGTAAAATTACTAGACA+AGG | + | chr7.2:9443713-9443732 | None:intergenic | 25.0% |
| ! | ATAATCATAGAACACTGTTT+CGG | + | chr7.2:9442843-9442862 | None:intergenic | 25.0% |
| ! | CAAAATACAATAACAGTGAA+TGG | + | chr7.2:9443134-9443153 | None:intergenic | 25.0% |
| ! | GATTCATCAACTAAACATTA+CGG | + | chr7.2:9442760-9442779 | None:intergenic | 25.0% |
| ! | TAAATCAACCAAAGCTATAA+TGG | + | chr7.2:9442971-9442990 | None:intergenic | 25.0% |
| !! | CATTTACACATTCAGTTTTA+GGG | - | chr7.2:9442702-9442721 | MS.gene020578:CDS | 25.0% |
| !! | TCATTTACACATTCAGTTTT+AGG | - | chr7.2:9442701-9442720 | MS.gene020578:CDS | 25.0% |
| !! | TTTGCAATTTTTGATGCTAT+TGG | - | chr7.2:9443003-9443022 | MS.gene020578:intron | 25.0% |
| !!! | AAGCTTAATTTAGCTTTACA+CGG | + | chr7.2:9443600-9443619 | None:intergenic | 25.0% |
| AAAGAGTCGGCATAATAAAA+AGG | + | chr7.2:9443935-9443954 | None:intergenic | 30.0% | |
| ATTTATTCGTAGTGATTCTC+AGG | - | chr7.2:9443285-9443304 | MS.gene020578:intron | 30.0% | |
| CAGTGTTCTATGATTATTGT+AGG | - | chr7.2:9442846-9442865 | MS.gene020578:intron | 30.0% | |
| GAGATAAAAATGACTCATGT+TGG | - | chr7.2:9443309-9443328 | MS.gene020578:intron | 30.0% | |
| TATTGTACTTGGGAATTTGA+TGG | - | chr7.2:9442792-9442811 | MS.gene020578:CDS | 30.0% | |
| TTGTGAACTCAAAATGTAAG+AGG | - | chr7.2:9443455-9443474 | MS.gene020578:CDS | 30.0% | |
| ! | TACTAACTTTTCCACACAAA+GGG | + | chr7.2:9443192-9443211 | None:intergenic | 30.0% |
| ! | TTACTAACTTTTCCACACAA+AGG | + | chr7.2:9443193-9443212 | None:intergenic | 30.0% |
| !!! | AAATGACTCATGTTGGTTTT+TGG | - | chr7.2:9443316-9443335 | MS.gene020578:intron | 30.0% |
| !!! | TACATTTTGAGTTCACAAAG+AGG | + | chr7.2:9443453-9443472 | None:intergenic | 30.0% |
| AAAAAGAGGTCTCAAAGAGT+CGG | + | chr7.2:9443948-9443967 | None:intergenic | 35.0% | |
| AATGTAACTAGGTTCATGGA+TGG | + | chr7.2:9443646-9443665 | None:intergenic | 35.0% | |
| ATATTATGCATCTGTTGTGC+AGG | - | chr7.2:9443753-9443772 | MS.gene020578:intron | 35.0% | |
| CAACAATGTAACTAGGTTCA+TGG | + | chr7.2:9443650-9443669 | None:intergenic | 35.0% | |
| CAAGGCTATCTCATAGAATT+AGG | + | chr7.2:9443695-9443714 | None:intergenic | 35.0% | |
| GTAACCACAACAATGTAACT+AGG | + | chr7.2:9443657-9443676 | None:intergenic | 35.0% | |
| TCAAGTACCCATTATAGCTT+TGG | - | chr7.2:9442960-9442979 | MS.gene020578:intron | 35.0% | |
| TGAACCTAGTTACATTGTTG+TGG | - | chr7.2:9443650-9443669 | MS.gene020578:CDS | 35.0% | |
| AATTTATTGCGCCCTTTGTG+TGG | - | chr7.2:9443178-9443197 | MS.gene020578:intron | 40.0% | |
| ATAAATCTGATCCCTCTTCC+TGG | + | chr7.2:9443271-9443290 | None:intergenic | 40.0% | |
| CAAAGATTTACCCAGGAAGA+GGG | - | chr7.2:9443257-9443276 | MS.gene020578:intron | 40.0% | |
| GGAGAGGATAAAGAAAACCA+AGG | - | chr7.2:9444133-9444152 | MS.gene020578:intron | 40.0% | |
| TAAATCTGATCCCTCTTCCT+GGG | + | chr7.2:9443270-9443289 | None:intergenic | 40.0% | |
| TTCAAGTGTAGCACCAACAA+TGG | + | chr7.2:9443839-9443858 | None:intergenic | 40.0% | |
| ! | CATCTAAGGCACAAAAGTCA+GGG | - | chr7.2:9444186-9444205 | MS.gene020578:intron | 40.0% |
| ! | TTGTGCCTTAGATGCTACTT+CGG | + | chr7.2:9444180-9444199 | None:intergenic | 40.0% |
| !! | GACAGAGTTCAGTTCTGAAA+TGG | + | chr7.2:9443225-9443244 | None:intergenic | 40.0% |
| !! | TTGAAGGCTTCAACTTGTTG+TGG | + | chr7.2:9443486-9443505 | None:intergenic | 40.0% |
| AAGGCACAAAAGTCAGGGAA+AGG | - | chr7.2:9444191-9444210 | MS.gene020578:intron | 45.0% | |
| AGGGAAAGGCAATGTTCAGA+AGG | - | chr7.2:9444205-9444224 | MS.gene020578:intron | 45.0% | |
| ATGCCCAAGGGTCCTAAAAT+GGG | - | chr7.2:9444233-9444252 | MS.gene020578:intron | 45.0% | |
| ATTTCACTGCGGGATTGACT+CGG | + | chr7.2:9444110-9444129 | None:intergenic | 45.0% | |
| CTCAAGAAGCTGTGAAGAAG+AGG | - | chr7.2:9443782-9443801 | MS.gene020578:intron | 45.0% | |
| GAAAGCCGAAGTAGCATCTA+AGG | - | chr7.2:9444172-9444191 | MS.gene020578:intron | 45.0% | |
| GCAAAGATTTACCCAGGAAG+AGG | - | chr7.2:9443256-9443275 | MS.gene020578:intron | 45.0% | |
| GGGAAAGGCAATGTTCAGAA+GGG | - | chr7.2:9444206-9444225 | MS.gene020578:intron | 45.0% | |
| GTACAGAAAGCAGCACAAGA+AGG | - | chr7.2:9443525-9443544 | MS.gene020578:intron | 45.0% | |
| TATGCCCAAGGGTCCTAAAA+TGG | - | chr7.2:9444232-9444251 | MS.gene020578:intron | 45.0% | |
| TCAATCCCGCAGTGAAATCA+AGG | - | chr7.2:9444112-9444131 | MS.gene020578:intron | 45.0% | |
| TCCTCTCCTTGATTTCACTG+CGG | + | chr7.2:9444121-9444140 | None:intergenic | 45.0% | |
| TGAAGCCTTCAAAGCTCACA+TGG | - | chr7.2:9443494-9443513 | MS.gene020578:intron | 45.0% | |
| ! | AGATGCTACTTCGGCTTTCT+TGG | + | chr7.2:9444171-9444190 | None:intergenic | 45.0% |
| ! | CTTGGCTTTCTTCTCATCCT+TGG | + | chr7.2:9444153-9444172 | None:intergenic | 45.0% |
| ! | GCATCTAAGGCACAAAAGTC+AGG | - | chr7.2:9444185-9444204 | MS.gene020578:intron | 45.0% |
| !! | ACTGAACTCTGTCGATTCAG+TGG | - | chr7.2:9443232-9443251 | MS.gene020578:intron | 45.0% |
| !! | CTTGTGCTGCTTTCTGTACA+TGG | + | chr7.2:9443524-9443543 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAAAAAAAAAG+AGG | + | chr7.2:9443962-9443981 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTCA+TGG | - | chr7.2:9443964-9443983 | MS.gene020578:intron | 5.0% |
| AGTGGCGCAAAGATTTACCC+AGG | - | chr7.2:9443250-9443269 | MS.gene020578:intron | 50.0% | |
| CCAACAATGGACCTGGAGTA+TGG | + | chr7.2:9443826-9443845 | None:intergenic | 50.0% | |
| CCATACTCCAGGTCCATTGT+TGG | - | chr7.2:9443823-9443842 | MS.gene020578:intron | 50.0% | |
| CCTCTCCTTGATTTCACTGC+GGG | + | chr7.2:9444120-9444139 | None:intergenic | 50.0% | |
| TGTAGCACCAACAATGGACC+TGG | + | chr7.2:9443833-9443852 | None:intergenic | 50.0% | |
| ! | AGTATGGCTTCTTGGTGGCA+CGG | + | chr7.2:9443810-9443829 | None:intergenic | 50.0% |
| ! | GCAGTCCATGTGAGCTTTGA+AGG | + | chr7.2:9443502-9443521 | None:intergenic | 50.0% |
| AAGGGTCCTAAAATGGGCGG+TGG | - | chr7.2:9444239-9444258 | MS.gene020578:intron | 55.0% | |
| ATCTCGAACCTCGGGCTTCT+CGG | + | chr7.2:9443881-9443900 | None:intergenic | 55.0% | |
| CCACCAAGAAGCCATACTCC+AGG | - | chr7.2:9443812-9443831 | MS.gene020578:intron | 55.0% | |
| CCCAAGGGTCCTAAAATGGG+CGG | - | chr7.2:9444236-9444255 | MS.gene020578:intron | 55.0% | |
| CCCGCAGTGAAATCAAGGAG+AGG | - | chr7.2:9444117-9444136 | MS.gene020578:intron | 55.0% | |
| CCTAGCAGCATCTCGAACCT+CGG | + | chr7.2:9443890-9443909 | None:intergenic | 55.0% | |
| CCTGGAGTATGGCTTCTTGG+TGG | + | chr7.2:9443815-9443834 | None:intergenic | 55.0% | |
| CGAGGTTCGAGATGCTGCTA+GGG | - | chr7.2:9443888-9443907 | MS.gene020578:intron | 55.0% | |
| CTAGCAGCATCTCGAACCTC+GGG | + | chr7.2:9443889-9443908 | None:intergenic | 55.0% | |
| CTGCTAGGGAAGCTGCTCTT+CGG | - | chr7.2:9443902-9443921 | MS.gene020578:intron | 55.0% | |
| GAAAAGAACCGAGAAGCCCG+AGG | - | chr7.2:9443870-9443889 | MS.gene020578:intron | 55.0% | |
| GGACCTGGAGTATGGCTTCT+TGG | + | chr7.2:9443818-9443837 | None:intergenic | 55.0% | |
| ! | CTAAAATGGGCGGTGGTGGT+GGG | - | chr7.2:9444246-9444265 | MS.gene020578:intron | 55.0% |
| !! | CAGAAGGGTGCTATGCCCAA+GGG | - | chr7.2:9444221-9444240 | MS.gene020578:intron | 55.0% |
| !! | TCAGAAGGGTGCTATGCCCA+AGG | - | chr7.2:9444220-9444239 | MS.gene020578:intron | 55.0% |
| !!! | ACCGCCCATTTTAGGACCCT+TGG | + | chr7.2:9444240-9444259 | None:intergenic | 55.0% |
| !!! | CCGCCCATTTTAGGACCCTT+GGG | + | chr7.2:9444239-9444258 | None:intergenic | 55.0% |
| CCGAGGTTCGAGATGCTGCT+AGG | - | chr7.2:9443887-9443906 | MS.gene020578:intron | 60.0% | |
| GGTCCTAAAATGGGCGGTGG+TGG | - | chr7.2:9444242-9444261 | MS.gene020578:intron | 60.0% | |
| ! | CCACCACCACCGCCCATTTT+AGG | + | chr7.2:9444248-9444267 | None:intergenic | 60.0% |
| ! | CCTAAAATGGGCGGTGGTGG+TGG | - | chr7.2:9444245-9444264 | MS.gene020578:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 9442662 | 9444277 | 9442662 | ID=MS.gene020578 |
| chr7.2 | mRNA | 9442662 | 9444277 | 9442662 | ID=MS.gene020578.t1;Parent=MS.gene020578 |
| chr7.2 | exon | 9444267 | 9444277 | 9444267 | ID=MS.gene020578.t1.exon1;Parent=MS.gene020578.t1 |
| chr7.2 | CDS | 9444267 | 9444277 | 9444267 | ID=cds.MS.gene020578.t1;Parent=MS.gene020578.t1 |
| chr7.2 | exon | 9443633 | 9443708 | 9443633 | ID=MS.gene020578.t1.exon2;Parent=MS.gene020578.t1 |
| chr7.2 | CDS | 9443633 | 9443708 | 9443633 | ID=cds.MS.gene020578.t1;Parent=MS.gene020578.t1 |
| chr7.2 | exon | 9443393 | 9443494 | 9443393 | ID=MS.gene020578.t1.exon3;Parent=MS.gene020578.t1 |
| chr7.2 | CDS | 9443393 | 9443494 | 9443393 | ID=cds.MS.gene020578.t1;Parent=MS.gene020578.t1 |
| chr7.2 | exon | 9443016 | 9443164 | 9443016 | ID=MS.gene020578.t1.exon4;Parent=MS.gene020578.t1 |
| chr7.2 | CDS | 9443016 | 9443164 | 9443016 | ID=cds.MS.gene020578.t1;Parent=MS.gene020578.t1 |
| chr7.2 | exon | 9442662 | 9442815 | 9442662 | ID=MS.gene020578.t1.exon5;Parent=MS.gene020578.t1 |
| chr7.2 | CDS | 9442662 | 9442815 | 9442662 | ID=cds.MS.gene020578.t1;Parent=MS.gene020578.t1 |
| Gene Sequence |
| Protein sequence |
