Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065297.t1 | XP_003590400.1 | 100 | 163 | 0 | 0 | 1 | 163 | 1 | 163 | 7.70E-55 | 223.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065297.t1 | O65743 | 95.6 | 113 | 5 | 0 | 1 | 113 | 1 | 113 | 5.0e-55 | 215.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065297.t1 | Q1SN35 | 100.0 | 163 | 0 | 0 | 1 | 163 | 1 | 163 | 5.5e-55 | 223.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057052 | MS.gene065297 | 0.805867 | 1.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065297 | MS.gene007334 | PPI |
| MS.gene049306 | MS.gene065297 | PPI |
| MS.gene065297 | MS.gene007335 | PPI |
| MS.gene07704 | MS.gene065297 | PPI |
| MS.gene007336 | MS.gene065297 | PPI |
| MS.gene065297 | MS.gene47371 | PPI |
| MS.gene065297 | MS.gene007610 | PPI |
| MS.gene065297 | MS.gene06433 | PPI |
| MS.gene065297 | MS.gene007607 | PPI |
| MS.gene013335 | MS.gene065297 | PPI |
| MS.gene065297 | MS.gene020577 | PPI |
| MS.gene23040 | MS.gene065297 | PPI |
| MS.gene24639 | MS.gene065297 | PPI |
| MS.gene020578 | MS.gene065297 | PPI |
| MS.gene034951 | MS.gene065297 | PPI |
| MS.gene30990 | MS.gene065297 | PPI |
| MS.gene007610 | MS.gene065297 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065297.t1 | MTR_1g061670 | 100.000 | 163 | 0 | 0 | 1 | 163 | 1 | 163 | 3.43e-116 | 325 |
| MS.gene065297.t1 | MTR_7g103320 | 95.333 | 150 | 6 | 1 | 1 | 150 | 1 | 149 | 5.47e-90 | 259 |
| MS.gene065297.t1 | MTR_7g103320 | 95.333 | 150 | 6 | 1 | 1 | 150 | 1 | 149 | 5.47e-90 | 259 |
| MS.gene065297.t1 | MTR_7g103320 | 95.333 | 150 | 6 | 1 | 1 | 150 | 1 | 149 | 5.47e-90 | 259 |
| MS.gene065297.t1 | MTR_4g104930 | 79.630 | 54 | 10 | 1 | 43 | 96 | 13 | 65 | 1.73e-23 | 87.8 |
| MS.gene065297.t1 | MTR_4g055270 | 36.842 | 95 | 58 | 1 | 3 | 95 | 1 | 95 | 2.55e-18 | 77.4 |
| MS.gene065297.t1 | MTR_2g084925 | 34.409 | 93 | 59 | 1 | 3 | 93 | 1 | 93 | 9.24e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065297.t1 | AT2G36620 | 88.079 | 151 | 18 | 0 | 1 | 151 | 1 | 151 | 1.07e-85 | 248 |
| MS.gene065297.t1 | AT3G53020 | 86.755 | 151 | 18 | 1 | 1 | 151 | 1 | 149 | 2.04e-82 | 240 |
| MS.gene065297.t1 | AT2G44860 | 36.719 | 128 | 68 | 5 | 3 | 126 | 1 | 119 | 8.96e-18 | 75.9 |
| MS.gene065297.t1 | AT2G44860 | 36.719 | 128 | 68 | 5 | 3 | 126 | 1 | 119 | 8.96e-18 | 75.9 |
Find 46 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAAAAGCCAGAGGTTC+GGG | 0.343696 | 1.2:-46944825 | MS.gene065297:CDS |
| ACCACCAAGCTTAGGACCTT+TGG | 0.350728 | 1.2:+46944509 | None:intergenic |
| CTTGTGTTGCTTCCTGTACA+TGG | 0.368138 | 1.2:+46945806 | None:intergenic |
| ACACCGAAGTGCAGCTTCTC+TGG | 0.384329 | 1.2:+46944796 | None:intergenic |
| GCCAAGATCTACCCTGGGAG+GGG | 0.390686 | 1.2:-46946052 | MS.gene065297:CDS |
| GCAGTCCATGTAAGCTTTGA+GGG | 0.415662 | 1.2:+46945828 | None:intergenic |
| GTCTATTGTTGGTGCTACTT+TGG | 0.416689 | 1.2:-46944867 | MS.gene065297:CDS |
| GATCAGAAAAGCCAGAGGTT+CGG | 0.422937 | 1.2:-46944826 | MS.gene065297:CDS |
| CCTAAGCTTGGTGGTGGAGG+AGG | 0.426298 | 1.2:-46944501 | MS.gene065297:CDS |
| GGCAGTCCATGTAAGCTTTG+AGG | 0.432460 | 1.2:+46945827 | None:intergenic |
| TACATTTCGAGTTGACAAAC+AGG | 0.440559 | 1.2:+46945877 | None:intergenic |
| GGACGAGAAGAAGGCGAAGA+AGG | 0.443654 | 1.2:-46944592 | MS.gene065297:CDS |
| CTGGCAGCATCCCGAACCTC+TGG | 0.449570 | 1.2:+46944815 | None:intergenic |
| ATTTATCCGTAGTGATTCTC+AGG | 0.450559 | 1.2:-46946023 | MS.gene065297:intron |
| AGGACCTTTGGATGCACCCT+TGG | 0.456981 | 1.2:+46944521 | None:intergenic |
| ACCACTGAATCGGCACAATT+CGG | 0.461843 | 1.2:+46946075 | None:intergenic |
| TTGAGGGCTTCAACTTGTTG+TGG | 0.469444 | 1.2:+46945844 | None:intergenic |
| CCTCCTCCACCACCAAGCTT+AGG | 0.478205 | 1.2:+46944501 | None:intergenic |
| AGATCTTGGCACCACTGAAT+CGG | 0.487454 | 1.2:+46946065 | None:intergenic |
| CCTTACTCAAGGTCTATTGT+TGG | 0.490739 | 1.2:-46944878 | MS.gene065297:CDS |
| TTGTCAACTCGAAATGTAAG+AGG | 0.493316 | 1.2:-46945872 | MS.gene065297:CDS |
| TGAAGCCCTCAAAGCTTACA+TGG | 0.503244 | 1.2:-46945833 | MS.gene065297:CDS |
| GGTCCTAAGCTTGGTGGTGG+AGG | 0.504766 | 1.2:-46944504 | MS.gene065297:CDS |
| CCAAGATCTACCCTGGGAGG+GGG | 0.513418 | 1.2:-46946051 | MS.gene065297:CDS |
| GAAAACAAAGGACGAGAAGA+AGG | 0.514857 | 1.2:-46944601 | MS.gene065297:CDS |
| GAAGGCAGAAAGTCAAGCCA+AGG | 0.518118 | 1.2:-46944574 | MS.gene065297:CDS |
| TTACATGGACTGCCATGTAC+AGG | 0.528646 | 1.2:-46945818 | MS.gene065297:CDS |
| CTAAGCTTGGTGGTGGAGGA+GGG | 0.531900 | 1.2:-46944500 | MS.gene065297:CDS |
| TGGAAAAGGCAATGTTTCCA+AGG | 0.536839 | 1.2:-46944538 | MS.gene065297:CDS |
| CCAACAATAGACCTTGAGTA+AGG | 0.546017 | 1.2:+46944878 | None:intergenic |
| TTTCAGTGAAATTAAGGAGA+GGG | 0.546597 | 1.2:-46944628 | MS.gene065297:intron |
| AAAGGTCCTAAGCTTGGTGG+TGG | 0.554861 | 1.2:-46944507 | MS.gene065297:CDS |
| AGTGGTGCCAAGATCTACCC+TGG | 0.559906 | 1.2:-46946058 | MS.gene065297:CDS |
| TCCAAAGGTCCTAAGCTTGG+TGG | 0.561560 | 1.2:-46944510 | MS.gene065297:CDS |
| TGCCAAGATCTACCCTGGGA+GGG | 0.567188 | 1.2:-46946053 | MS.gene065297:CDS |
| GCATCCAAAGGTCCTAAGCT+TGG | 0.575831 | 1.2:-46944513 | MS.gene065297:CDS |
| ACCGAATTGTGCCGATTCAG+TGG | 0.583637 | 1.2:-46946076 | MS.gene065297:CDS |
| CTGCCAGAGAAGCTGCACTT+CGG | 0.587266 | 1.2:-46944799 | MS.gene065297:intron |
| GTTTCCAAGGGTGCATCCAA+AGG | 0.588659 | 1.2:-46944525 | MS.gene065297:CDS |
| GGAAAAGGCAATGTTTCCAA+GGG | 0.594196 | 1.2:-46944537 | MS.gene065297:CDS |
| ATAGTACCTGAGAATCACTA+CGG | 0.638614 | 1.2:+46946017 | None:intergenic |
| GTGGTGCCAAGATCTACCCT+GGG | 0.639716 | 1.2:-46946057 | MS.gene065297:CDS |
| GAAAAGATCAGAAAAGCCAG+AGG | 0.660729 | 1.2:-46944831 | MS.gene065297:CDS |
| GTACAGGAAGCAACACAAGA+AGG | 0.660890 | 1.2:-46945802 | MS.gene065297:intron |
| GTGCCAAGATCTACCCTGGG+AGG | 0.687257 | 1.2:-46946054 | MS.gene065297:CDS |
| GGAGAGGGTTAAGAAAACAA+AGG | 0.692091 | 1.2:-46944613 | MS.gene065297:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTATTGAAAATGAAAA+TGG | - | chr1.2:46944629-46944648 | MS.gene065297:intron | 15.0% |
| !! | AAATAACAACATATTTGCAA+TGG | + | chr1.2:46945196-46945215 | None:intergenic | 20.0% |
| !! | AATGTCGAATTTATATAGTT+TGG | - | chr1.2:46944594-46944613 | MS.gene065297:CDS | 20.0% |
| !! | CATTTAACAAATGTGTTAAT+GGG | - | chr1.2:46944795-46944814 | MS.gene065297:intron | 20.0% |
| !! | CTTATGAATATAAGTCATAA+AGG | - | chr1.2:46945358-46945377 | MS.gene065297:intron | 20.0% |
| !! | TAAATTCAAAGCTTATAAGA+TGG | + | chr1.2:46945451-46945470 | None:intergenic | 20.0% |
| !!! | AGATTGAAGTTTGTTATTAT+TGG | - | chr1.2:46944933-46944952 | MS.gene065297:intron | 20.0% |
| !!! | GATTGAAGTTTGTTATTATT+GGG | - | chr1.2:46944934-46944953 | MS.gene065297:intron | 20.0% |
| !!! | GTATTTTATATTTGTGTGTT+AGG | - | chr1.2:46944817-46944836 | MS.gene065297:CDS | 20.0% |
| !!! | TGCAAATATGTTGTTATTTA+GGG | - | chr1.2:46945197-46945216 | MS.gene065297:intron | 20.0% |
| !!! | TTGCAAATATGTTGTTATTT+AGG | - | chr1.2:46945196-46945215 | MS.gene065297:intron | 20.0% |
| ! | AAACATAAGAAGATGAGTAT+TGG | - | chr1.2:46945522-46945541 | MS.gene065297:intron | 25.0% |
| ! | ATATGATTTCCAATTGATGA+TGG | + | chr1.2:46945573-46945592 | None:intergenic | 25.0% |
| ! | ATTCTCAGGTACTATAAAAT+TGG | - | chr1.2:46944907-46944926 | MS.gene065297:CDS | 25.0% |
| ! | GCATTTAACAAATGTGTTAA+TGG | - | chr1.2:46944794-46944813 | MS.gene065297:intron | 25.0% |
| ! | TAAAATTAAGCCAATCCAAA+CGG | + | chr1.2:46945224-46945243 | None:intergenic | 25.0% |
| ! | TTATATTCATAAGCTTGTCA+AGG | + | chr1.2:46945351-46945370 | None:intergenic | 25.0% |
| !! | AATTACGCAAAAGTGATTTT+AGG | + | chr1.2:46945152-46945171 | None:intergenic | 25.0% |
| !! | ACTTTTCTGATTGTAAGTAA+TGG | - | chr1.2:46944769-46944788 | MS.gene065297:intron | 25.0% |
| !! | ATTTTTATGTGTACATTGAC+AGG | - | chr1.2:46945968-46945987 | MS.gene065297:intron | 25.0% |
| !! | TATAGTCTGTTTGAGATTAT+TGG | - | chr1.2:46944662-46944681 | MS.gene065297:intron | 25.0% |
| !! | TTTCTCTCTTATTTCTTACA+TGG | - | chr1.2:46946145-46946164 | MS.gene065297:intron | 25.0% |
| !!! | AGTTCTTTTGATGATATTTC+TGG | + | chr1.2:46945621-46945640 | None:intergenic | 25.0% |
| !!! | TGTTGTTTTCAGTGAAATTA+AGG | - | chr1.2:46946282-46946301 | MS.gene065297:intron | 25.0% |
| !!! | TTTGTGTTTGTTGATTTTTC+AGG | - | chr1.2:46945012-46945031 | MS.gene065297:intron | 25.0% |
| AAAATTAAGCCAATCCAAAC+GGG | + | chr1.2:46945223-46945242 | None:intergenic | 30.0% | |
| AACAACATAATGACTTCAGA+TGG | + | chr1.2:46946269-46946288 | None:intergenic | 30.0% | |
| AGTCGTAAGGTAATATTAGA+AGG | + | chr1.2:46945475-46945494 | None:intergenic | 30.0% | |
| ATACTTCTGATATTTACCTC+AGG | - | chr1.2:46945705-46945724 | MS.gene065297:intron | 30.0% | |
| TAACTTTCATCATAATCCTG+AGG | + | chr1.2:46945724-46945743 | None:intergenic | 30.0% | |
| TAGCATAGTAACATGTTTAG+AGG | + | chr1.2:46945758-46945777 | None:intergenic | 30.0% | |
| TCTTAGTGTATATGTACTCT+TGG | - | chr1.2:46946204-46946223 | MS.gene065297:intron | 30.0% | |
| TTCTAATATTACCTTACGAC+TGG | - | chr1.2:46945474-46945493 | MS.gene065297:intron | 30.0% | |
| TTTCAGTGAAATTAAGGAGA+GGG | - | chr1.2:46946288-46946307 | MS.gene065297:intron | 30.0% | |
| ! | TCAAGTATGTTTTCTCTGAT+CGG | - | chr1.2:46944498-46944517 | MS.gene065297:CDS | 30.0% |
| ! | TTTTCAGTGAAATTAAGGAG+AGG | - | chr1.2:46946287-46946306 | MS.gene065297:intron | 30.0% |
| ATAGTACCTGAGAATCACTA+CGG | + | chr1.2:46944902-46944921 | None:intergenic | 35.0% | |
| ATATGTAATAGCCAGTCGTA+AGG | + | chr1.2:46945488-46945507 | None:intergenic | 35.0% | |
| ATTTATCCGTAGTGATTCTC+AGG | - | chr1.2:46944893-46944912 | MS.gene065297:CDS | 35.0% | |
| CAATACAAGACTGTTTGGAT+TGG | + | chr1.2:46945428-46945447 | None:intergenic | 35.0% | |
| CTTGTCTTTCACTTACTGTT+TGG | - | chr1.2:46945888-46945907 | MS.gene065297:intron | 35.0% | |
| CTTGTCTTTCTGTTAATGCT+TGG | - | chr1.2:46945778-46945797 | MS.gene065297:intron | 35.0% | |
| GCACAAAAATCTGTTGGAAA+AGG | - | chr1.2:46946364-46946383 | MS.gene065297:intron | 35.0% | |
| TGTGACAAACCATCATCAAT+TGG | - | chr1.2:46945561-46945580 | MS.gene065297:intron | 35.0% | |
| TTCAGATGGTGAGAAATGAA+AGG | + | chr1.2:46946255-46946274 | None:intergenic | 35.0% | |
| TTGTCAACTCGAAATGTAAG+AGG | - | chr1.2:46945044-46945063 | MS.gene065297:intron | 35.0% | |
| !! | TACATTTCGAGTTGACAAAC+AGG | + | chr1.2:46945042-46945061 | None:intergenic | 35.0% |
| ATCGTAAACAACACTGCAGT+AGG | + | chr1.2:46944556-46944575 | None:intergenic | 40.0% | |
| CCAACAATAGACCTTGAGTA+AGG | + | chr1.2:46946041-46946060 | None:intergenic | 40.0% | |
| CCTTACTCAAGGTCTATTGT+TGG | - | chr1.2:46946038-46946057 | MS.gene065297:CDS | 40.0% | |
| CTACCAAAAAGCCTTACTCA+AGG | - | chr1.2:46946027-46946046 | MS.gene065297:CDS | 40.0% | |
| GAAAACAAAGGACGAGAAGA+AGG | - | chr1.2:46946315-46946334 | MS.gene065297:intron | 40.0% | |
| GAAAAGATCAGAAAAGCCAG+AGG | - | chr1.2:46946085-46946104 | MS.gene065297:intron | 40.0% | |
| GATGGCAATACAAGACTGTT+TGG | + | chr1.2:46945433-46945452 | None:intergenic | 40.0% | |
| GGAAAAGGCAATGTTTCCAA+GGG | - | chr1.2:46946379-46946398 | MS.gene065297:intron | 40.0% | |
| GGAGAGGGTTAAGAAAACAA+AGG | - | chr1.2:46946303-46946322 | MS.gene065297:intron | 40.0% | |
| GTGATTCGTTGCTTATGTGA+TGG | - | chr1.2:46944989-46945008 | MS.gene065297:intron | 40.0% | |
| TGGAAAAGGCAATGTTTCCA+AGG | - | chr1.2:46946378-46946397 | MS.gene065297:intron | 40.0% | |
| ! | AGACCTTGAGTAAGGCTTTT+TGG | + | chr1.2:46946033-46946052 | None:intergenic | 40.0% |
| ! | CTTGGTGTAATCTGAAGTCT+TGG | - | chr1.2:46945796-46945815 | MS.gene065297:intron | 40.0% |
| ! | TCCAACAGATTTTTGTGCCT+TGG | + | chr1.2:46946362-46946381 | None:intergenic | 40.0% |
| !! | CCTCTTTTTCACAGCTTCTT+GGG | + | chr1.2:46946000-46946019 | None:intergenic | 40.0% |
| !! | GTCTATTGTTGGTGCTACTT+TGG | - | chr1.2:46946049-46946068 | MS.gene065297:CDS | 40.0% |
| ACCACTGAATCGGCACAATT+CGG | + | chr1.2:46944844-46944863 | None:intergenic | 45.0% | |
| AGATCTTGGCACCACTGAAT+CGG | + | chr1.2:46944854-46944873 | None:intergenic | 45.0% | |
| AGGAAGCAACACAAGAAGGT+GGG | - | chr1.2:46945118-46945137 | MS.gene065297:intron | 45.0% | |
| ATCAGAAAAGCCAGAGGTTC+GGG | - | chr1.2:46946091-46946110 | MS.gene065297:intron | 45.0% | |
| CCCAAGAAGCTGTGAAAAAG+AGG | - | chr1.2:46945997-46946016 | MS.gene065297:intron | 45.0% | |
| GATCAGAAAAGCCAGAGGTT+CGG | - | chr1.2:46946090-46946109 | MS.gene065297:intron | 45.0% | |
| GCCAAGGCACAAAAATCTGT+TGG | - | chr1.2:46946358-46946377 | MS.gene065297:intron | 45.0% | |
| GTACAGGAAGCAACACAAGA+AGG | - | chr1.2:46945114-46945133 | MS.gene065297:intron | 45.0% | |
| TGAAGCCCTCAAAGCTTACA+TGG | - | chr1.2:46945083-46945102 | MS.gene065297:intron | 45.0% | |
| ! | GCAGTCCATGTAAGCTTTGA+GGG | + | chr1.2:46945091-46945110 | None:intergenic | 45.0% |
| ! | TATTTAGGGCCCGTTTGGAT+TGG | - | chr1.2:46945211-46945230 | MS.gene065297:intron | 45.0% |
| ! | TTACATGGACTGCCATGTAC+AGG | - | chr1.2:46945098-46945117 | MS.gene065297:intron | 45.0% |
| !! | CTTGTGTTGCTTCCTGTACA+TGG | + | chr1.2:46945113-46945132 | None:intergenic | 45.0% |
| !! | GCCTCTTTTTCACAGCTTCT+TGG | + | chr1.2:46946001-46946020 | None:intergenic | 45.0% |
| !! | GTTGTTATTTAGGGCCCGTT+TGG | - | chr1.2:46945206-46945225 | MS.gene065297:intron | 45.0% |
| !! | TTGAGGGCTTCAACTTGTTG+TGG | + | chr1.2:46945075-46945094 | None:intergenic | 45.0% |
| ACCACCAAGCTTAGGACCTT+TGG | + | chr1.2:46946410-46946429 | None:intergenic | 50.0% | |
| ATAAATCTGATCCCCCTCCC+AGG | + | chr1.2:46944879-46944898 | None:intergenic | 50.0% | |
| CAGGAAGCAACACAAGAAGG+TGG | - | chr1.2:46945117-46945136 | MS.gene065297:intron | 50.0% | |
| GAAGGCAGAAAGTCAAGCCA+AGG | - | chr1.2:46946342-46946361 | MS.gene065297:intron | 50.0% | |
| GCATCCAAAGGTCCTAAGCT+TGG | - | chr1.2:46946403-46946422 | MS.gene065297:intron | 50.0% | |
| GGCAGTCCATGTAAGCTTTG+AGG | + | chr1.2:46945092-46945111 | None:intergenic | 50.0% | |
| TAAATCTGATCCCCCTCCCA+GGG | + | chr1.2:46944878-46944897 | None:intergenic | 50.0% | |
| TCCAAAGGTCCTAAGCTTGG+TGG | - | chr1.2:46946406-46946425 | MS.gene065297:intron | 50.0% | |
| ! | AAAGGTCCTAAGCTTGGTGG+TGG | - | chr1.2:46946409-46946428 | MS.gene065297:intron | 50.0% |
| ! | GTTTCCAAGGGTGCATCCAA+AGG | - | chr1.2:46946391-46946410 | MS.gene065297:intron | 50.0% |
| !! | ACCGAATTGTGCCGATTCAG+TGG | - | chr1.2:46944840-46944859 | MS.gene065297:CDS | 50.0% |
| ACACCGAAGTGCAGCTTCTC+TGG | + | chr1.2:46946123-46946142 | None:intergenic | 55.0% | |
| AGGACCTTTGGATGCACCCT+TGG | + | chr1.2:46946398-46946417 | None:intergenic | 55.0% | |
| CTGCCAGAGAAGCTGCACTT+CGG | - | chr1.2:46946117-46946136 | MS.gene065297:intron | 55.0% | |
| GGACGAGAAGAAGGCGAAGA+AGG | - | chr1.2:46946324-46946343 | MS.gene065297:intron | 55.0% | |
| TGCCAAGATCTACCCTGGGA+GGG | - | chr1.2:46944863-46944882 | MS.gene065297:CDS | 55.0% | |
| ! | AGTGGTGCCAAGATCTACCC+TGG | - | chr1.2:46944858-46944877 | MS.gene065297:CDS | 55.0% |
| ! | GTGGTGCCAAGATCTACCCT+GGG | - | chr1.2:46944859-46944878 | MS.gene065297:CDS | 55.0% |
| !! | CTAAGCTTGGTGGTGGAGGA+GGG | - | chr1.2:46946416-46946435 | MS.gene065297:intron | 55.0% |
| CCAAGATCTACCCTGGGAGG+GGG | - | chr1.2:46944865-46944884 | MS.gene065297:CDS | 60.0% | |
| CCTCCTCCACCACCAAGCTT+AGG | + | chr1.2:46946418-46946437 | None:intergenic | 60.0% | |
| GCCAAGATCTACCCTGGGAG+GGG | - | chr1.2:46944864-46944883 | MS.gene065297:CDS | 60.0% | |
| GTGCCAAGATCTACCCTGGG+AGG | - | chr1.2:46944862-46944881 | MS.gene065297:CDS | 60.0% | |
| !! | CCTAAGCTTGGTGGTGGAGG+AGG | - | chr1.2:46946415-46946434 | MS.gene065297:intron | 60.0% |
| !! | GGTCCTAAGCTTGGTGGTGG+AGG | - | chr1.2:46946412-46946431 | MS.gene065297:intron | 60.0% |
| CCCCCTCCCAGGGTAGATCT+TGG | + | chr1.2:46944868-46944887 | None:intergenic | 65.0% | |
| CTGGCAGCATCCCGAACCTC+TGG | + | chr1.2:46946104-46946123 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 46944491 | 46946447 | 46944491 | ID=MS.gene065297 |
| chr1.2 | mRNA | 46944491 | 46946447 | 46944491 | ID=MS.gene065297.t1;Parent=MS.gene065297 |
| chr1.2 | exon | 46946437 | 46946447 | 46946437 | ID=MS.gene065297.t1.exon1;Parent=MS.gene065297.t1 |
| chr1.2 | CDS | 46946437 | 46946447 | 46946437 | ID=cds.MS.gene065297.t1;Parent=MS.gene065297.t1 |
| chr1.2 | exon | 46946024 | 46946099 | 46946024 | ID=MS.gene065297.t1.exon2;Parent=MS.gene065297.t1 |
| chr1.2 | CDS | 46946024 | 46946099 | 46946024 | ID=cds.MS.gene065297.t1;Parent=MS.gene065297.t1 |
| chr1.2 | exon | 46945803 | 46945904 | 46945803 | ID=MS.gene065297.t1.exon3;Parent=MS.gene065297.t1 |
| chr1.2 | CDS | 46945803 | 46945904 | 46945803 | ID=cds.MS.gene065297.t1;Parent=MS.gene065297.t1 |
| chr1.2 | exon | 46944800 | 46944948 | 46944800 | ID=MS.gene065297.t1.exon4;Parent=MS.gene065297.t1 |
| chr1.2 | CDS | 46944800 | 46944948 | 46944800 | ID=cds.MS.gene065297.t1;Parent=MS.gene065297.t1 |
| chr1.2 | exon | 46944491 | 46944644 | 46944491 | ID=MS.gene065297.t1.exon5;Parent=MS.gene065297.t1 |
| chr1.2 | CDS | 46944491 | 46944644 | 46944491 | ID=cds.MS.gene065297.t1;Parent=MS.gene065297.t1 |
| Gene Sequence |
| Protein sequence |
