Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47371.t1 | XP_003590400.1 | 97.5 | 163 | 4 | 0 | 6 | 168 | 1 | 163 | 4.30E-53 | 217.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47371.t1 | O65743 | 92.0 | 113 | 9 | 0 | 6 | 118 | 1 | 113 | 2.8e-53 | 209.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47371.t1 | Q1SN35 | 97.5 | 163 | 4 | 0 | 6 | 168 | 1 | 163 | 3.1e-53 | 217.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057272 | MS.gene47371 | 0.81038 | 1.19E-50 | -1.69E-46 |
| MS.gene060483 | MS.gene47371 | 0.801104 | 1.05E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007334 | MS.gene47371 | PPI |
| MS.gene47371 | MS.gene007334 | PPI |
| MS.gene065297 | MS.gene47371 | PPI |
| MS.gene007336 | MS.gene47371 | PPI |
| MS.gene013335 | MS.gene47371 | PPI |
| MS.gene007607 | MS.gene47371 | PPI |
| MS.gene23040 | MS.gene47371 | PPI |
| MS.gene24639 | MS.gene47371 | PPI |
| MS.gene020578 | MS.gene47371 | PPI |
| MS.gene034951 | MS.gene47371 | PPI |
| MS.gene020577 | MS.gene47371 | PPI |
| MS.gene007335 | MS.gene47371 | PPI |
| MS.gene30990 | MS.gene47371 | PPI |
| MS.gene06433 | MS.gene47371 | PPI |
| MS.gene049306 | MS.gene47371 | PPI |
| MS.gene07704 | MS.gene47371 | PPI |
| MS.gene007610 | MS.gene47371 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47371.t1 | MTR_1g061670 | 97.546 | 163 | 4 | 0 | 6 | 168 | 1 | 163 | 1.90e-113 | 319 |
| MS.gene47371.t1 | MTR_7g103320 | 92.667 | 150 | 10 | 1 | 6 | 155 | 1 | 149 | 4.40e-87 | 252 |
| MS.gene47371.t1 | MTR_7g103320 | 92.667 | 150 | 10 | 1 | 6 | 155 | 1 | 149 | 4.40e-87 | 252 |
| MS.gene47371.t1 | MTR_7g103320 | 92.667 | 150 | 10 | 1 | 6 | 155 | 1 | 149 | 4.40e-87 | 252 |
| MS.gene47371.t1 | MTR_4g104930 | 79.630 | 54 | 10 | 1 | 48 | 101 | 13 | 65 | 2.37e-23 | 87.8 |
| MS.gene47371.t1 | MTR_4g055270 | 37.895 | 95 | 57 | 1 | 8 | 100 | 1 | 95 | 1.74e-18 | 77.8 |
| MS.gene47371.t1 | MTR_2g084925 | 35.484 | 93 | 58 | 1 | 8 | 98 | 1 | 93 | 8.88e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47371.t1 | AT2G36620 | 85.430 | 151 | 22 | 0 | 6 | 156 | 1 | 151 | 7.69e-83 | 241 |
| MS.gene47371.t1 | AT3G53020 | 84.106 | 151 | 22 | 1 | 6 | 156 | 1 | 149 | 1.05e-79 | 234 |
| MS.gene47371.t1 | AT2G44860 | 37.500 | 128 | 67 | 5 | 8 | 131 | 1 | 119 | 5.68e-18 | 76.6 |
| MS.gene47371.t1 | AT2G44860 | 37.500 | 128 | 67 | 5 | 8 | 131 | 1 | 119 | 5.68e-18 | 76.6 |
Find 44 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGAAGCCAGAGGTTC+GGG | 0.353375 | 1.4:-50839956 | MS.gene47371:CDS |
| CTTGTGTTGCTTCCTGTACA+TGG | 0.368138 | 1.4:+50840952 | None:intergenic |
| ACACCGAAGTGCAGCTTCTC+TGG | 0.384329 | 1.4:+50839927 | None:intergenic |
| GCCAAGATCTACCCTGGGAG+GGG | 0.390686 | 1.4:-50841195 | MS.gene47371:CDS |
| GCAGTCCATGTAAGCTTTGA+GGG | 0.415662 | 1.4:+50840974 | None:intergenic |
| GTCTATTGTTGGTGCTACTT+TGG | 0.416689 | 1.4:-50839998 | MS.gene47371:CDS |
| GGCAGTCCATGTAAGCTTTG+AGG | 0.432460 | 1.4:+50840973 | None:intergenic |
| TACATTTCGAGTTGACAAAC+AGG | 0.440559 | 1.4:+50841023 | None:intergenic |
| GATCAGAGAAGCCAGAGGTT+CGG | 0.443820 | 1.4:-50839957 | MS.gene47371:CDS |
| CCTCCTCCACCACCAAGCTT+AGG | 0.447642 | 1.4:+50839632 | None:intergenic |
| CTGGCAGCATCCCGAACCTC+TGG | 0.449570 | 1.4:+50839946 | None:intergenic |
| ATTTATCCGTAGTGATTCTC+AGG | 0.450559 | 1.4:-50841166 | MS.gene47371:intron |
| TTGAGGGCTTCAACTTGTTG+TGG | 0.469444 | 1.4:+50840990 | None:intergenic |
| GGATGAGAAGAAGGCGAAGA+AGG | 0.476204 | 1.4:-50839723 | MS.gene47371:CDS |
| AGATCTTGGCACCACTGAAT+CGG | 0.487454 | 1.4:+50841208 | None:intergenic |
| CCTTACTCAAGGTCTATTGT+TGG | 0.490739 | 1.4:-50840009 | MS.gene47371:CDS |
| CCTAAGCTTGGTGGTGGAGG+AGG | 0.490820 | 1.4:-50839632 | MS.gene47371:CDS |
| GTTTCCAAGGGTGCATCAAA+AGG | 0.492035 | 1.4:-50839656 | MS.gene47371:CDS |
| TTGTCAACTCGAAATGTAAG+AGG | 0.493316 | 1.4:-50841018 | MS.gene47371:CDS |
| GAAAACAAAGGATGAGAAGA+AGG | 0.495920 | 1.4:-50839732 | MS.gene47371:CDS |
| TGAAGCCCTCAAAGCTTACA+TGG | 0.503244 | 1.4:-50840979 | MS.gene47371:CDS |
| GGTCCTAAGCTTGGTGGTGG+AGG | 0.504766 | 1.4:-50839635 | MS.gene47371:CDS |
| CCAAGATCTACCCTGGGAGG+GGG | 0.513418 | 1.4:-50841194 | MS.gene47371:CDS |
| GAAGGCAGAAAGTCAAGCCA+AGG | 0.518118 | 1.4:-50839705 | MS.gene47371:CDS |
| TTGCAGTGAAATTAAGGAGA+GGG | 0.527258 | 1.4:-50839759 | MS.gene47371:intron |
| TTACATGGACTGCCATGTAC+AGG | 0.528646 | 1.4:-50840964 | MS.gene47371:CDS |
| TGGAAAGGGCAATGTTTCCA+AGG | 0.545955 | 1.4:-50839669 | MS.gene47371:CDS |
| CCAACAATAGACCTTGAGTA+AGG | 0.546017 | 1.4:+50840009 | None:intergenic |
| AAAGGTCCTAAGCTTGGTGG+TGG | 0.554861 | 1.4:-50839638 | MS.gene47371:CDS |
| AGTGGTGCCAAGATCTACCC+TGG | 0.559906 | 1.4:-50841201 | MS.gene47371:CDS |
| TGCCAAGATCTACCCTGGGA+GGG | 0.567188 | 1.4:-50841196 | MS.gene47371:CDS |
| GCATCAAAAGGTCCTAAGCT+TGG | 0.570740 | 1.4:-50839644 | MS.gene47371:CDS |
| ACCGAGTTGTGCCGATTCAG+TGG | 0.573181 | 1.4:-50841219 | MS.gene47371:CDS |
| ACCACTGAATCGGCACAACT+CGG | 0.585587 | 1.4:+50841218 | None:intergenic |
| CTGCCAGAGAAGCTGCACTT+CGG | 0.587266 | 1.4:-50839930 | MS.gene47371:intron |
| TCAAAAGGTCCTAAGCTTGG+TGG | 0.588654 | 1.4:-50839641 | MS.gene47371:CDS |
| ATATTACCTGAGAATCACTA+CGG | 0.596958 | 1.4:+50841160 | None:intergenic |
| GGAAAGGGCAATGTTTCCAA+GGG | 0.603312 | 1.4:-50839668 | MS.gene47371:CDS |
| GGAGAGGGTTAAGAAAACAA+AGG | 0.615156 | 1.4:-50839744 | MS.gene47371:CDS |
| GTGGTGCCAAGATCTACCCT+GGG | 0.639716 | 1.4:-50841200 | MS.gene47371:CDS |
| TTTGCAGTGAAATTAAGGAG+AGG | 0.655385 | 1.4:-50839760 | MS.gene47371:intron |
| GTACAGGAAGCAACACAAGA+AGG | 0.660890 | 1.4:-50840948 | MS.gene47371:intron |
| GAAACGATCAGAGAAGCCAG+AGG | 0.669453 | 1.4:-50839962 | MS.gene47371:CDS |
| GTGCCAAGATCTACCCTGGG+AGG | 0.687257 | 1.4:-50841197 | MS.gene47371:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCATTAGTAAGAATTT+AGG | + | chr1.4:50840098-50840117 | None:intergenic | 15.0% |
| !! | AATTTATCCTTCTGATATTA+AGG | - | chr1.4:50840303-50840322 | MS.gene47371:intron | 20.0% |
| !! | ATTCTCAGGTAATATAAAAT+TGG | - | chr1.4:50839716-50839735 | MS.gene47371:CDS | 20.0% |
| !! | TATACCATTCAATAACATAA+AGG | + | chr1.4:50840624-50840643 | None:intergenic | 20.0% |
| !!! | AATGGTATAATTTGAAGTTT+TGG | - | chr1.4:50840635-50840654 | MS.gene47371:intron | 20.0% |
| ! | AAAAACATAATGACTTCAGA+TGG | + | chr1.4:50841090-50841109 | None:intergenic | 25.0% |
| ! | AGTTTATTAGATGGAAATCT+TGG | + | chr1.4:50840244-50840263 | None:intergenic | 25.0% |
| ! | TAGCAAATCTGTTGTATTTA+AGG | - | chr1.4:50840004-50840023 | MS.gene47371:CDS | 25.0% |
| ! | TGTGACTAATTATCATCAAT+TGG | - | chr1.4:50840413-50840432 | MS.gene47371:intron | 25.0% |
| !! | GTATTTTATACTTGTGTGTT+AGG | - | chr1.4:50839626-50839645 | MS.gene47371:CDS | 25.0% |
| !! | TTTCTCTCTTATTTCTTACA+TGG | - | chr1.4:50840966-50840985 | MS.gene47371:CDS | 25.0% |
| !!! | AGAGATTGAAGTTTGTTATT+GGG | - | chr1.4:50839740-50839759 | MS.gene47371:CDS | 25.0% |
| !!! | TAAATACAACAGATTTGCTA+CGG | + | chr1.4:50840004-50840023 | None:intergenic | 25.0% |
| !!! | TGTTTTTTGCAGTGAAATTA+AGG | - | chr1.4:50841103-50841122 | MS.gene47371:intron | 25.0% |
| !!! | TTATTTTTATGTGTACTGAC+AGG | - | chr1.4:50840789-50840808 | MS.gene47371:intron | 25.0% |
| !!! | TTTGTGTTTGTTGATTTTTC+AGG | - | chr1.4:50839818-50839837 | MS.gene47371:intron | 25.0% |
| AAATCTTGGTTTACGTACTA+CGG | + | chr1.4:50840230-50840249 | None:intergenic | 30.0% | |
| AGCTTCTATGTATTACTGAT+AGG | + | chr1.4:50840164-50840183 | None:intergenic | 30.0% | |
| AGGATAAATTCACAGCTTAA+AGG | + | chr1.4:50840293-50840312 | None:intergenic | 30.0% | |
| ATATTACCTGAGAATCACTA+CGG | + | chr1.4:50839711-50839730 | None:intergenic | 30.0% | |
| ATCTAATAAACTTCACTGTG+AGG | - | chr1.4:50840252-50840271 | MS.gene47371:intron | 30.0% | |
| ATGAGACAAACAACATATGA+AGG | + | chr1.4:50840125-50840144 | None:intergenic | 30.0% | |
| TATACTTTCTGATTTACCTC+AGG | - | chr1.4:50840546-50840565 | MS.gene47371:intron | 30.0% | |
| TCACAGTGAAGTTTATTAGA+TGG | + | chr1.4:50840253-50840272 | None:intergenic | 30.0% | |
| TCTAATAAACTTCACTGTGA+GGG | - | chr1.4:50840253-50840272 | MS.gene47371:intron | 30.0% | |
| TCTTAGTCTATATGTACTCT+TGG | - | chr1.4:50841025-50841044 | MS.gene47371:CDS | 30.0% | |
| TTGTGTAACCTGATTATCAA+AGG | - | chr1.4:50840456-50840475 | MS.gene47371:intron | 30.0% | |
| ! | TGAAAGTTCCTTTGATAATC+AGG | + | chr1.4:50840467-50840486 | None:intergenic | 30.0% |
| !! | CAGAGATTGAAGTTTGTTAT+TGG | - | chr1.4:50839739-50839758 | MS.gene47371:CDS | 30.0% |
| AAAAATAAGCCAATCCAACC+GGG | - | chr1.4:50840203-50840222 | MS.gene47371:intron | 35.0% | |
| AATCTTGGTTTACGTACTAC+GGG | + | chr1.4:50840229-50840248 | None:intergenic | 35.0% | |
| ATTTATCCGTAGTGATTCTC+AGG | - | chr1.4:50839702-50839721 | MS.gene47371:CDS | 35.0% | |
| CAAAAATAAGCCAATCCAAC+CGG | - | chr1.4:50840202-50840221 | MS.gene47371:intron | 35.0% | |
| CATTGCACCTTAATATCAGA+AGG | + | chr1.4:50840313-50840332 | None:intergenic | 35.0% | |
| CCATTCAATAACATAAAGGC+AGG | + | chr1.4:50840620-50840639 | None:intergenic | 35.0% | |
| CCTGCCTTTATGTTATTGAA+TGG | - | chr1.4:50840617-50840636 | MS.gene47371:intron | 35.0% | |
| CTAATAAACTTCACTGTGAG+GGG | - | chr1.4:50840254-50840273 | MS.gene47371:intron | 35.0% | |
| GAAAACAAAGGATGAGAAGA+AGG | - | chr1.4:50841136-50841155 | MS.gene47371:intron | 35.0% | |
| GCACAAAAATCTGTTGGAAA+GGG | - | chr1.4:50841185-50841204 | MS.gene47371:CDS | 35.0% | |
| GTAACATGTTTAGATGTGTG+TGG | + | chr1.4:50840590-50840609 | None:intergenic | 35.0% | |
| TAACACCAACAGTAACAGAA+AGG | + | chr1.4:50840732-50840751 | None:intergenic | 35.0% | |
| TAACTTTCGTCATAATCCTG+AGG | + | chr1.4:50840565-50840584 | None:intergenic | 35.0% | |
| TACTTGCCTTTCTGTTATGA+TGG | - | chr1.4:50840758-50840777 | MS.gene47371:intron | 35.0% | |
| TATTACTGATAGGCTTGTCA+AGG | + | chr1.4:50840154-50840173 | None:intergenic | 35.0% | |
| TTGCAGTGAAATTAAGGAGA+GGG | - | chr1.4:50841109-50841128 | MS.gene47371:intron | 35.0% | |
| TTGTCAACTCGAAATGTAAG+AGG | - | chr1.4:50839850-50839869 | MS.gene47371:intron | 35.0% | |
| TTTGCAGTGAAATTAAGGAG+AGG | - | chr1.4:50841108-50841127 | MS.gene47371:intron | 35.0% | |
| ! | TTGGTGTAATTTGAAGTCGT+AGG | - | chr1.4:50840654-50840673 | MS.gene47371:intron | 35.0% |
| !! | CAGATTTGCTACGGAATATA+TGG | + | chr1.4:50839995-50840014 | None:intergenic | 35.0% |
| !! | TACATTTCGAGTTGACAAAC+AGG | + | chr1.4:50839848-50839867 | None:intergenic | 35.0% |
| ATGCAGCCATCATAACAGAA+AGG | + | chr1.4:50840767-50840786 | None:intergenic | 40.0% | |
| CCAACAATAGACCTTGAGTA+AGG | + | chr1.4:50840862-50840881 | None:intergenic | 40.0% | |
| CCTTACTCAAGGTCTATTGT+TGG | - | chr1.4:50840859-50840878 | MS.gene47371:intron | 40.0% | |
| CTACCAAAAAGCCTTACTCA+AGG | - | chr1.4:50840848-50840867 | MS.gene47371:intron | 40.0% | |
| GGAGAGGGTTAAGAAAACAA+AGG | - | chr1.4:50841124-50841143 | MS.gene47371:intron | 40.0% | |
| GGCACAAAAATCTGTTGGAA+AGG | - | chr1.4:50841184-50841203 | MS.gene47371:CDS | 40.0% | |
| GTGATTCGTTGCTTATGTGA+TGG | - | chr1.4:50839795-50839814 | MS.gene47371:intron | 40.0% | |
| ! | AGACCTTGAGTAAGGCTTTT+TGG | + | chr1.4:50840854-50840873 | None:intergenic | 40.0% |
| ! | TCCAACAGATTTTTGTGCCT+TGG | + | chr1.4:50841183-50841202 | None:intergenic | 40.0% |
| !! | CCTCTTTTTCACAGCTTCTT+GGG | + | chr1.4:50840821-50840840 | None:intergenic | 40.0% |
| !! | GTCTATTGTTGGTGCTACTT+TGG | - | chr1.4:50840870-50840889 | MS.gene47371:intron | 40.0% |
| ACTCGCCTTTCTGTTACTGT+TGG | - | chr1.4:50840724-50840743 | MS.gene47371:intron | 45.0% | |
| AGATCTTGGCACCACTGAAT+CGG | + | chr1.4:50839663-50839682 | None:intergenic | 45.0% | |
| CCCAAGAAGCTGTGAAAAAG+AGG | - | chr1.4:50840818-50840837 | MS.gene47371:intron | 45.0% | |
| GCATCAAAAGGTCCTAAGCT+TGG | - | chr1.4:50841224-50841243 | MS.gene47371:CDS | 45.0% | |
| GCCAAGGCACAAAAATCTGT+TGG | - | chr1.4:50841179-50841198 | MS.gene47371:CDS | 45.0% | |
| GGAAAGGGCAATGTTTCCAA+GGG | - | chr1.4:50841200-50841219 | MS.gene47371:CDS | 45.0% | |
| GTACAGGAAGCAACACAAGA+AGG | - | chr1.4:50839920-50839939 | MS.gene47371:intron | 45.0% | |
| TCAAAAGGTCCTAAGCTTGG+TGG | - | chr1.4:50841227-50841246 | MS.gene47371:CDS | 45.0% | |
| TGAAGCCCTCAAAGCTTACA+TGG | - | chr1.4:50839889-50839908 | MS.gene47371:intron | 45.0% | |
| TGGAAAGGGCAATGTTTCCA+AGG | - | chr1.4:50841199-50841218 | MS.gene47371:CDS | 45.0% | |
| ! | GCAGTCCATGTAAGCTTTGA+GGG | + | chr1.4:50839897-50839916 | None:intergenic | 45.0% |
| ! | GTTTCCAAGGGTGCATCAAA+AGG | - | chr1.4:50841212-50841231 | MS.gene47371:CDS | 45.0% |
| ! | TTACATGGACTGCCATGTAC+AGG | - | chr1.4:50839904-50839923 | MS.gene47371:intron | 45.0% |
| !! | CTTGTGTTGCTTCCTGTACA+TGG | + | chr1.4:50839919-50839938 | None:intergenic | 45.0% |
| !! | GCCTCTTTTTCACAGCTTCT+TGG | + | chr1.4:50840822-50840841 | None:intergenic | 45.0% |
| !! | TTGAGGGCTTCAACTTGTTG+TGG | + | chr1.4:50839881-50839900 | None:intergenic | 45.0% |
| ACCACTGAATCGGCACAACT+CGG | + | chr1.4:50839653-50839672 | None:intergenic | 50.0% | |
| ATAAATCTGATCCCCCTCCC+AGG | + | chr1.4:50839688-50839707 | None:intergenic | 50.0% | |
| ATCAGAGAAGCCAGAGGTTC+GGG | - | chr1.4:50840912-50840931 | MS.gene47371:intron | 50.0% | |
| GAAACGATCAGAGAAGCCAG+AGG | - | chr1.4:50840906-50840925 | MS.gene47371:intron | 50.0% | |
| GAAGGCAGAAAGTCAAGCCA+AGG | - | chr1.4:50841163-50841182 | MS.gene47371:intron | 50.0% | |
| GATCAGAGAAGCCAGAGGTT+CGG | - | chr1.4:50840911-50840930 | MS.gene47371:intron | 50.0% | |
| GGATGAGAAGAAGGCGAAGA+AGG | - | chr1.4:50841145-50841164 | MS.gene47371:intron | 50.0% | |
| GGCAGTCCATGTAAGCTTTG+AGG | + | chr1.4:50839898-50839917 | None:intergenic | 50.0% | |
| TAAATCTGATCCCCCTCCCA+GGG | + | chr1.4:50839687-50839706 | None:intergenic | 50.0% | |
| ! | AAAGGTCCTAAGCTTGGTGG+TGG | - | chr1.4:50841230-50841249 | MS.gene47371:CDS | 50.0% |
| ! | AGGACCTTTTGATGCACCCT+TGG | + | chr1.4:50841219-50841238 | None:intergenic | 50.0% |
| ACACCGAAGTGCAGCTTCTC+TGG | + | chr1.4:50840944-50840963 | None:intergenic | 55.0% | |
| CTGCCAGAGAAGCTGCACTT+CGG | - | chr1.4:50840938-50840957 | MS.gene47371:intron | 55.0% | |
| TGCCAAGATCTACCCTGGGA+GGG | - | chr1.4:50839672-50839691 | MS.gene47371:CDS | 55.0% | |
| TGGTTTACGTACTACGGGCC+CGG | + | chr1.4:50840224-50840243 | None:intergenic | 55.0% | |
| ! | AGTGGTGCCAAGATCTACCC+TGG | - | chr1.4:50839667-50839686 | MS.gene47371:CDS | 55.0% |
| ! | GTGGTGCCAAGATCTACCCT+GGG | - | chr1.4:50839668-50839687 | MS.gene47371:CDS | 55.0% |
| !! | ACCGAGTTGTGCCGATTCAG+TGG | - | chr1.4:50839649-50839668 | MS.gene47371:CDS | 55.0% |
| CCAAGATCTACCCTGGGAGG+GGG | - | chr1.4:50839674-50839693 | MS.gene47371:CDS | 60.0% | |
| CCTCCTCCACCACCAAGCTT+AGG | + | chr1.4:50841239-50841258 | None:intergenic | 60.0% | |
| GCCAAGATCTACCCTGGGAG+GGG | - | chr1.4:50839673-50839692 | MS.gene47371:CDS | 60.0% | |
| GTGCCAAGATCTACCCTGGG+AGG | - | chr1.4:50839671-50839690 | MS.gene47371:CDS | 60.0% | |
| TACTACGGGCCCGGTTGGAT+TGG | + | chr1.4:50840215-50840234 | None:intergenic | 60.0% | |
| TTACGTACTACGGGCCCGGT+TGG | + | chr1.4:50840220-50840239 | None:intergenic | 60.0% | |
| !! | CCTAAGCTTGGTGGTGGAGG+AGG | - | chr1.4:50841236-50841255 | MS.gene47371:CDS | 60.0% |
| !! | GGTCCTAAGCTTGGTGGTGG+AGG | - | chr1.4:50841233-50841252 | MS.gene47371:CDS | 60.0% |
| CCCCCTCCCAGGGTAGATCT+TGG | + | chr1.4:50839677-50839696 | None:intergenic | 65.0% | |
| CTGGCAGCATCCCGAACCTC+TGG | + | chr1.4:50840925-50840944 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 50839622 | 50841268 | 50839622 | ID=MS.gene47371 |
| chr1.4 | mRNA | 50839622 | 50841268 | 50839622 | ID=MS.gene47371.t1;Parent=MS.gene47371 |
| chr1.4 | exon | 50841167 | 50841268 | 50841167 | ID=MS.gene47371.t1.exon1;Parent=MS.gene47371.t1 |
| chr1.4 | CDS | 50841167 | 50841268 | 50841167 | ID=cds.MS.gene47371.t1;Parent=MS.gene47371.t1 |
| chr1.4 | exon | 50840949 | 50841050 | 50840949 | ID=MS.gene47371.t1.exon2;Parent=MS.gene47371.t1 |
| chr1.4 | CDS | 50840949 | 50841050 | 50840949 | ID=cds.MS.gene47371.t1;Parent=MS.gene47371.t1 |
| chr1.4 | exon | 50839931 | 50840079 | 50839931 | ID=MS.gene47371.t1.exon3;Parent=MS.gene47371.t1 |
| chr1.4 | CDS | 50839931 | 50840079 | 50839931 | ID=cds.MS.gene47371.t1;Parent=MS.gene47371.t1 |
| chr1.4 | exon | 50839622 | 50839775 | 50839622 | ID=MS.gene47371.t1.exon4;Parent=MS.gene47371.t1 |
| chr1.4 | CDS | 50839622 | 50839775 | 50839622 | ID=cds.MS.gene47371.t1;Parent=MS.gene47371.t1 |
| Gene Sequence |
| Protein sequence |
