Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034951.t1 | XP_003590400.1 | 100 | 163 | 0 | 0 | 1 | 163 | 1 | 163 | 7.70E-55 | 223.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034951.t1 | O65743 | 95.6 | 113 | 5 | 0 | 1 | 113 | 1 | 113 | 5.0e-55 | 215.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034951.t1 | Q1SN35 | 100.0 | 163 | 0 | 0 | 1 | 163 | 1 | 163 | 5.5e-55 | 223.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007336 | MS.gene034951 | PPI |
| MS.gene034951 | MS.gene020578 | PPI |
| MS.gene034951 | MS.gene013335 | PPI |
| MS.gene034951 | MS.gene007336 | PPI |
| MS.gene034951 | MS.gene007334 | PPI |
| MS.gene034951 | MS.gene007335 | PPI |
| MS.gene034951 | MS.gene47371 | PPI |
| MS.gene049306 | MS.gene034951 | PPI |
| MS.gene034951 | MS.gene007610 | PPI |
| MS.gene034951 | MS.gene30990 | PPI |
| MS.gene034951 | MS.gene23040 | PPI |
| MS.gene034951 | MS.gene06433 | PPI |
| MS.gene034951 | MS.gene065297 | PPI |
| MS.gene034951 | MS.gene007607 | PPI |
| MS.gene034951 | MS.gene24639 | PPI |
| MS.gene034951 | MS.gene020577 | PPI |
| MS.gene034951 | MS.gene07704 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034951.t1 | MTR_1g061670 | 100.000 | 163 | 0 | 0 | 1 | 163 | 1 | 163 | 3.43e-116 | 325 |
| MS.gene034951.t1 | MTR_7g103320 | 95.333 | 150 | 6 | 1 | 1 | 150 | 1 | 149 | 5.47e-90 | 259 |
| MS.gene034951.t1 | MTR_7g103320 | 95.333 | 150 | 6 | 1 | 1 | 150 | 1 | 149 | 5.47e-90 | 259 |
| MS.gene034951.t1 | MTR_7g103320 | 95.333 | 150 | 6 | 1 | 1 | 150 | 1 | 149 | 5.47e-90 | 259 |
| MS.gene034951.t1 | MTR_4g104930 | 79.630 | 54 | 10 | 1 | 43 | 96 | 13 | 65 | 1.73e-23 | 87.8 |
| MS.gene034951.t1 | MTR_4g055270 | 36.842 | 95 | 58 | 1 | 3 | 95 | 1 | 95 | 2.55e-18 | 77.4 |
| MS.gene034951.t1 | MTR_2g084925 | 34.409 | 93 | 59 | 1 | 3 | 93 | 1 | 93 | 9.24e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034951.t1 | AT2G36620 | 88.079 | 151 | 18 | 0 | 1 | 151 | 1 | 151 | 1.07e-85 | 248 |
| MS.gene034951.t1 | AT3G53020 | 86.755 | 151 | 18 | 1 | 1 | 151 | 1 | 149 | 2.04e-82 | 240 |
| MS.gene034951.t1 | AT2G44860 | 36.719 | 128 | 68 | 5 | 3 | 126 | 1 | 119 | 8.96e-18 | 75.9 |
| MS.gene034951.t1 | AT2G44860 | 36.719 | 128 | 68 | 5 | 3 | 126 | 1 | 119 | 8.96e-18 | 75.9 |
Find 44 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGAAGCCAGAGGTTC+GGG | 0.353375 | 1.3:-44487216 | MS.gene034951:CDS |
| CTTGTGTTGCTTCCTGTACA+TGG | 0.368138 | 1.3:+44488210 | None:intergenic |
| ACACCGAAGTGCAGCTTCTC+TGG | 0.384329 | 1.3:+44487187 | None:intergenic |
| GCCAAGATCTACCCTGGGAG+GGG | 0.390686 | 1.3:-44488453 | MS.gene034951:CDS |
| GCAGTCCATGTAAGCTTTGA+GGG | 0.415662 | 1.3:+44488232 | None:intergenic |
| GTCTATTGTTGGTGCTACTT+TGG | 0.416689 | 1.3:-44487258 | MS.gene034951:CDS |
| GGCAGTCCATGTAAGCTTTG+AGG | 0.432460 | 1.3:+44488231 | None:intergenic |
| TACATTTCGAGTTGACAAAC+AGG | 0.440559 | 1.3:+44488281 | None:intergenic |
| GATCAGAGAAGCCAGAGGTT+CGG | 0.443820 | 1.3:-44487217 | MS.gene034951:CDS |
| CCTCCTCCACCACCAAGCTT+AGG | 0.447642 | 1.3:+44486892 | None:intergenic |
| CTGGCAGCATCCCGAACCTC+TGG | 0.449570 | 1.3:+44487206 | None:intergenic |
| ATTTATCCGTAGTGATTCTC+AGG | 0.450559 | 1.3:-44488424 | MS.gene034951:intron |
| TTGAGGGCTTCAACTTGTTG+TGG | 0.469444 | 1.3:+44488248 | None:intergenic |
| GGATGAGAAGAAGGCGAAGA+AGG | 0.476204 | 1.3:-44486983 | MS.gene034951:CDS |
| AGATCTTGGCACCACTGAAT+CGG | 0.487454 | 1.3:+44488466 | None:intergenic |
| CCTTACTCAAGGTCTATTGT+TGG | 0.490739 | 1.3:-44487269 | MS.gene034951:CDS |
| CCTAAGCTTGGTGGTGGAGG+AGG | 0.490820 | 1.3:-44486892 | MS.gene034951:CDS |
| GTTTCCAAGGGTGCATCAAA+AGG | 0.492035 | 1.3:-44486916 | MS.gene034951:CDS |
| TTGTCAACTCGAAATGTAAG+AGG | 0.493316 | 1.3:-44488276 | MS.gene034951:CDS |
| GAAAACAAAGGATGAGAAGA+AGG | 0.495920 | 1.3:-44486992 | MS.gene034951:CDS |
| TGAAGCCCTCAAAGCTTACA+TGG | 0.503244 | 1.3:-44488237 | MS.gene034951:CDS |
| GGTCCTAAGCTTGGTGGTGG+AGG | 0.504766 | 1.3:-44486895 | MS.gene034951:CDS |
| CCAAGATCTACCCTGGGAGG+GGG | 0.513418 | 1.3:-44488452 | MS.gene034951:CDS |
| GAAGGCAGAAAGTCAAGCCA+AGG | 0.518118 | 1.3:-44486965 | MS.gene034951:CDS |
| TTGCAGTGAAATTAAGGAGA+GGG | 0.527258 | 1.3:-44487019 | MS.gene034951:intron |
| TTACATGGACTGCCATGTAC+AGG | 0.528646 | 1.3:-44488222 | MS.gene034951:CDS |
| TGGAAAAGGCAATGTTTCCA+AGG | 0.536839 | 1.3:-44486929 | MS.gene034951:CDS |
| CCAACAATAGACCTTGAGTA+AGG | 0.546017 | 1.3:+44487269 | None:intergenic |
| AAAGGTCCTAAGCTTGGTGG+TGG | 0.554861 | 1.3:-44486898 | MS.gene034951:CDS |
| AGTGGTGCCAAGATCTACCC+TGG | 0.559906 | 1.3:-44488459 | MS.gene034951:CDS |
| TGCCAAGATCTACCCTGGGA+GGG | 0.567188 | 1.3:-44488454 | MS.gene034951:CDS |
| GCATCAAAAGGTCCTAAGCT+TGG | 0.570740 | 1.3:-44486904 | MS.gene034951:CDS |
| ACCGAGTTGTGCCGATTCAG+TGG | 0.573181 | 1.3:-44488477 | MS.gene034951:CDS |
| ACCACTGAATCGGCACAACT+CGG | 0.585587 | 1.3:+44488476 | None:intergenic |
| CTGCCAGAGAAGCTGCACTT+CGG | 0.587266 | 1.3:-44487190 | MS.gene034951:intron |
| TCAAAAGGTCCTAAGCTTGG+TGG | 0.588654 | 1.3:-44486901 | MS.gene034951:CDS |
| GGAAAAGGCAATGTTTCCAA+GGG | 0.594196 | 1.3:-44486928 | MS.gene034951:CDS |
| ATATTACCTGAGAATCACTA+CGG | 0.596958 | 1.3:+44488418 | None:intergenic |
| GGAGAGGGTTAAGAAAACAA+AGG | 0.615156 | 1.3:-44487004 | MS.gene034951:CDS |
| GTGGTGCCAAGATCTACCCT+GGG | 0.639716 | 1.3:-44488458 | MS.gene034951:CDS |
| TTTGCAGTGAAATTAAGGAG+AGG | 0.655385 | 1.3:-44487020 | MS.gene034951:intron |
| GTACAGGAAGCAACACAAGA+AGG | 0.660890 | 1.3:-44488206 | MS.gene034951:intron |
| GAAACGATCAGAGAAGCCAG+AGG | 0.669453 | 1.3:-44487222 | MS.gene034951:CDS |
| GTGCCAAGATCTACCCTGGG+AGG | 0.687257 | 1.3:-44488455 | MS.gene034951:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCATTAGTAAGAATTT+AGG | + | chr1.3:44487661-44487680 | None:intergenic | 15.0% |
| !!! | TTAACATGTTTTATTGAAAA+TGG | - | chr1.3:44487003-44487022 | MS.gene034951:CDS | 15.0% |
| !! | AATGTTGAATTCATATAGTT+TGG | - | chr1.3:44486974-44486993 | MS.gene034951:CDS | 20.0% |
| !! | AATTTATCCTTCTGATATTA+AGG | - | chr1.3:44487866-44487885 | MS.gene034951:intron | 20.0% |
| !! | ATTCTCAGGTAATATAAAAT+TGG | - | chr1.3:44487281-44487300 | MS.gene034951:CDS | 20.0% |
| !! | CATTTAACAAATGTGTTAAT+GGG | - | chr1.3:44487169-44487188 | MS.gene034951:intron | 20.0% |
| !! | TATACCATTCAATAACATAA+AGG | + | chr1.3:44488187-44488206 | None:intergenic | 20.0% |
| !!! | AATGGTATAATTTGAAGTTT+TGG | - | chr1.3:44488198-44488217 | MS.gene034951:intron | 20.0% |
| ! | AAAAACATAATGACTTCAGA+TGG | + | chr1.3:44488653-44488672 | None:intergenic | 25.0% |
| ! | AGTTTATTAGATGGAAATCT+TGG | + | chr1.3:44487807-44487826 | None:intergenic | 25.0% |
| ! | GCATTTAACAAATGTGTTAA+TGG | - | chr1.3:44487168-44487187 | MS.gene034951:intron | 25.0% |
| ! | TGAATTCATATAGTTTGGTT+TGG | - | chr1.3:44486979-44486998 | MS.gene034951:CDS | 25.0% |
| ! | TGTGACTAATTATCATCAAT+TGG | - | chr1.3:44487976-44487995 | MS.gene034951:intron | 25.0% |
| !! | ACTTTTCTGATTGTAAGTAA+TGG | - | chr1.3:44487143-44487162 | MS.gene034951:intron | 25.0% |
| !! | GTATTTTATACTTGTCTGTT+AGG | - | chr1.3:44487191-44487210 | MS.gene034951:CDS | 25.0% |
| !! | TGTTATCTGTTTGAGATTAT+TGG | - | chr1.3:44487036-44487055 | MS.gene034951:intron | 25.0% |
| !! | TTTCTCTCTTATTTCTTACA+TGG | - | chr1.3:44488529-44488548 | MS.gene034951:intron | 25.0% |
| !!! | AGAGATTGAAGTTTGTTATT+GGG | - | chr1.3:44487305-44487324 | MS.gene034951:CDS | 25.0% |
| !!! | TGTTTTTTGCAGTGAAATTA+AGG | - | chr1.3:44488666-44488685 | MS.gene034951:intron | 25.0% |
| !!! | TTATTTTTATGTGTACTGAC+AGG | - | chr1.3:44488352-44488371 | MS.gene034951:intron | 25.0% |
| !!! | TTTGTGTTTGTTGATTTTTC+AGG | - | chr1.3:44487383-44487402 | MS.gene034951:intron | 25.0% |
| AAAAATAAGCCAATCCAATC+GGG | - | chr1.3:44487766-44487785 | MS.gene034951:intron | 30.0% | |
| AAATCTTGGTTTACGTACTA+CGG | + | chr1.3:44487793-44487812 | None:intergenic | 30.0% | |
| AGCTTCTATGTATTACTGAT+AGG | + | chr1.3:44487727-44487746 | None:intergenic | 30.0% | |
| AGGATAAATTCACAGCTTAA+AGG | + | chr1.3:44487856-44487875 | None:intergenic | 30.0% | |
| ATATTACCTGAGAATCACTA+CGG | + | chr1.3:44487276-44487295 | None:intergenic | 30.0% | |
| ATCTAATAAACTTCACTGTG+AGG | - | chr1.3:44487815-44487834 | MS.gene034951:intron | 30.0% | |
| ATGAGACAAACAACATATGA+AGG | + | chr1.3:44487688-44487707 | None:intergenic | 30.0% | |
| ATTGTAAACAACGTTGCAAT+AGG | + | chr1.3:44486952-44486971 | None:intergenic | 30.0% | |
| CAAAAATAAGCCAATCCAAT+CGG | - | chr1.3:44487765-44487784 | MS.gene034951:intron | 30.0% | |
| CAGCAAATCTGTTGTATTTA+AGG | - | chr1.3:44487567-44487586 | MS.gene034951:intron | 30.0% | |
| CTTAAATACAACAGATTTGC+TGG | + | chr1.3:44487569-44487588 | None:intergenic | 30.0% | |
| GAGTACATATAGACTAAGAA+CGG | + | chr1.3:44488587-44488606 | None:intergenic | 30.0% | |
| TATACTTTCTGATTTACCTC+AGG | - | chr1.3:44488109-44488128 | MS.gene034951:intron | 30.0% | |
| TCACAGTGAAGTTTATTAGA+TGG | + | chr1.3:44487816-44487835 | None:intergenic | 30.0% | |
| TCTAATAAACTTCACTGTGA+GGG | - | chr1.3:44487816-44487835 | MS.gene034951:intron | 30.0% | |
| TCTTAGTCTATATGTACTCT+TGG | - | chr1.3:44488588-44488607 | MS.gene034951:intron | 30.0% | |
| ! | TCAAGTATGTTTTCTCTGAT+CGG | - | chr1.3:44486889-44486908 | MS.gene034951:CDS | 30.0% |
| ! | TGAAAGTTCCTTTGATAATC+AGG | + | chr1.3:44488030-44488049 | None:intergenic | 30.0% |
| !! | AACAGATTTGCTGGAATATA+TGG | + | chr1.3:44487560-44487579 | None:intergenic | 30.0% |
| !! | CAGAGATTGAAGTTTGTTAT+TGG | - | chr1.3:44487304-44487323 | MS.gene034951:CDS | 30.0% |
| AATCTTGGTTTACGTACTAC+GGG | + | chr1.3:44487792-44487811 | None:intergenic | 35.0% | |
| ATTTATCCGTAGTGATTCTC+AGG | - | chr1.3:44487267-44487286 | MS.gene034951:CDS | 35.0% | |
| CCATTCAATAACATAAAGGC+AGG | + | chr1.3:44488183-44488202 | None:intergenic | 35.0% | |
| CCTGCCTTTATGTTATTGAA+TGG | - | chr1.3:44488180-44488199 | MS.gene034951:intron | 35.0% | |
| CTAATAAACTTCACTGTGAG+GGG | - | chr1.3:44487817-44487836 | MS.gene034951:intron | 35.0% | |
| GAAAACAAAGGATGAGAAGA+AGG | - | chr1.3:44488699-44488718 | MS.gene034951:intron | 35.0% | |
| GCACAAAAATCTGTTGGAAA+AGG | - | chr1.3:44488748-44488767 | MS.gene034951:intron | 35.0% | |
| GTAACATGTTTAGATGTGTG+TGG | + | chr1.3:44488153-44488172 | None:intergenic | 35.0% | |
| TAACACCAACAGTAACAGAA+AGG | + | chr1.3:44488295-44488314 | None:intergenic | 35.0% | |
| TAACTTTCGTCATAATCCTG+AGG | + | chr1.3:44488128-44488147 | None:intergenic | 35.0% | |
| TACTTGCCTTTCTGTTATGA+TGG | - | chr1.3:44488321-44488340 | MS.gene034951:intron | 35.0% | |
| TATTACTGATAGGCTTGTCA+AGG | + | chr1.3:44487717-44487736 | None:intergenic | 35.0% | |
| TTGCAGTGAAATTAAGGAGA+GGG | - | chr1.3:44488672-44488691 | MS.gene034951:intron | 35.0% | |
| TTGCGTAACCTGATTATCAA+AGG | - | chr1.3:44488019-44488038 | MS.gene034951:intron | 35.0% | |
| TTGTCAACTCGAAATGTAAG+AGG | - | chr1.3:44487415-44487434 | MS.gene034951:intron | 35.0% | |
| TTTGCAGTGAAATTAAGGAG+AGG | - | chr1.3:44488671-44488690 | MS.gene034951:intron | 35.0% | |
| ! | TTGGTGTAATTTGAAGTCGT+AGG | - | chr1.3:44488217-44488236 | MS.gene034951:CDS | 35.0% |
| !! | TACATTTCGAGTTGACAAAC+AGG | + | chr1.3:44487413-44487432 | None:intergenic | 35.0% |
| ATGCAGCCATCATAACAGAA+AGG | + | chr1.3:44488330-44488349 | None:intergenic | 40.0% | |
| CCAACAATAGACCTTGAGTA+AGG | + | chr1.3:44488425-44488444 | None:intergenic | 40.0% | |
| CCTTACTCAAGGTCTATTGT+TGG | - | chr1.3:44488422-44488441 | MS.gene034951:intron | 40.0% | |
| CGTTGCACCTTAATATCAGA+AGG | + | chr1.3:44487876-44487895 | None:intergenic | 40.0% | |
| CTACCAAAAAGCCTTACTCA+AGG | - | chr1.3:44488411-44488430 | MS.gene034951:intron | 40.0% | |
| GGAAAAGGCAATGTTTCCAA+GGG | - | chr1.3:44488763-44488782 | MS.gene034951:intron | 40.0% | |
| GGAGAGGGTTAAGAAAACAA+AGG | - | chr1.3:44488687-44488706 | MS.gene034951:intron | 40.0% | |
| GTGATTCGTTGCTTATGTGA+TGG | - | chr1.3:44487360-44487379 | MS.gene034951:intron | 40.0% | |
| TGGAAAAGGCAATGTTTCCA+AGG | - | chr1.3:44488762-44488781 | MS.gene034951:intron | 40.0% | |
| ! | AGACCTTGAGTAAGGCTTTT+TGG | + | chr1.3:44488417-44488436 | None:intergenic | 40.0% |
| ! | TCCAACAGATTTTTGTGCCT+TGG | + | chr1.3:44488746-44488765 | None:intergenic | 40.0% |
| !! | CCTCTTTTTCACAGCTTCTT+GGG | + | chr1.3:44488384-44488403 | None:intergenic | 40.0% |
| !! | GTCTATTGTTGGTGCTACTT+TGG | - | chr1.3:44488433-44488452 | MS.gene034951:CDS | 40.0% |
| ACTCGCCTTTCTGTTACTGT+TGG | - | chr1.3:44488287-44488306 | MS.gene034951:CDS | 45.0% | |
| AGATCTTGGCACCACTGAAT+CGG | + | chr1.3:44487228-44487247 | None:intergenic | 45.0% | |
| CCCAAGAAGCTGTGAAAAAG+AGG | - | chr1.3:44488381-44488400 | MS.gene034951:intron | 45.0% | |
| GCATCAAAAGGTCCTAAGCT+TGG | - | chr1.3:44488787-44488806 | MS.gene034951:intron | 45.0% | |
| GCCAAGGCACAAAAATCTGT+TGG | - | chr1.3:44488742-44488761 | MS.gene034951:intron | 45.0% | |
| GTACAGGAAGCAACACAAGA+AGG | - | chr1.3:44487485-44487504 | MS.gene034951:intron | 45.0% | |
| TCAAAAGGTCCTAAGCTTGG+TGG | - | chr1.3:44488790-44488809 | MS.gene034951:intron | 45.0% | |
| TGAAGCCCTCAAAGCTTACA+TGG | - | chr1.3:44487454-44487473 | MS.gene034951:intron | 45.0% | |
| ! | GCAGTCCATGTAAGCTTTGA+GGG | + | chr1.3:44487462-44487481 | None:intergenic | 45.0% |
| ! | GTTTCCAAGGGTGCATCAAA+AGG | - | chr1.3:44488775-44488794 | MS.gene034951:intron | 45.0% |
| ! | TTACATGGACTGCCATGTAC+AGG | - | chr1.3:44487469-44487488 | MS.gene034951:intron | 45.0% |
| !! | CTTGTGTTGCTTCCTGTACA+TGG | + | chr1.3:44487484-44487503 | None:intergenic | 45.0% |
| !! | GCCTCTTTTTCACAGCTTCT+TGG | + | chr1.3:44488385-44488404 | None:intergenic | 45.0% |
| !! | TTGAGGGCTTCAACTTGTTG+TGG | + | chr1.3:44487446-44487465 | None:intergenic | 45.0% |
| ACCACTGAATCGGCACAACT+CGG | + | chr1.3:44487218-44487237 | None:intergenic | 50.0% | |
| ATAAATCTGATCCCCCTCCC+AGG | + | chr1.3:44487253-44487272 | None:intergenic | 50.0% | |
| ATCAGAGAAGCCAGAGGTTC+GGG | - | chr1.3:44488475-44488494 | MS.gene034951:CDS | 50.0% | |
| GAAACGATCAGAGAAGCCAG+AGG | - | chr1.3:44488469-44488488 | MS.gene034951:CDS | 50.0% | |
| GAAGGCAGAAAGTCAAGCCA+AGG | - | chr1.3:44488726-44488745 | MS.gene034951:intron | 50.0% | |
| GATCAGAGAAGCCAGAGGTT+CGG | - | chr1.3:44488474-44488493 | MS.gene034951:CDS | 50.0% | |
| GGATGAGAAGAAGGCGAAGA+AGG | - | chr1.3:44488708-44488727 | MS.gene034951:intron | 50.0% | |
| GGCAGTCCATGTAAGCTTTG+AGG | + | chr1.3:44487463-44487482 | None:intergenic | 50.0% | |
| TAAATCTGATCCCCCTCCCA+GGG | + | chr1.3:44487252-44487271 | None:intergenic | 50.0% | |
| ! | AAAGGTCCTAAGCTTGGTGG+TGG | - | chr1.3:44488793-44488812 | MS.gene034951:intron | 50.0% |
| ! | AGGACCTTTTGATGCACCCT+TGG | + | chr1.3:44488782-44488801 | None:intergenic | 50.0% |
| ACACCGAAGTGCAGCTTCTC+TGG | + | chr1.3:44488507-44488526 | None:intergenic | 55.0% | |
| CTGCCAGAGAAGCTGCACTT+CGG | - | chr1.3:44488501-44488520 | MS.gene034951:intron | 55.0% | |
| TACTACGGGCCCGATTGGAT+TGG | + | chr1.3:44487778-44487797 | None:intergenic | 55.0% | |
| TGCCAAGATCTACCCTGGGA+GGG | - | chr1.3:44487237-44487256 | MS.gene034951:CDS | 55.0% | |
| TTACGTACTACGGGCCCGAT+TGG | + | chr1.3:44487783-44487802 | None:intergenic | 55.0% | |
| ! | AGTGGTGCCAAGATCTACCC+TGG | - | chr1.3:44487232-44487251 | MS.gene034951:CDS | 55.0% |
| ! | GTGGTGCCAAGATCTACCCT+GGG | - | chr1.3:44487233-44487252 | MS.gene034951:CDS | 55.0% |
| !! | ACCGAGTTGTGCCGATTCAG+TGG | - | chr1.3:44487214-44487233 | MS.gene034951:CDS | 55.0% |
| CCAAGATCTACCCTGGGAGG+GGG | - | chr1.3:44487239-44487258 | MS.gene034951:CDS | 60.0% | |
| CCTCCTCCACCACCAAGCTT+AGG | + | chr1.3:44488802-44488821 | None:intergenic | 60.0% | |
| GCCAAGATCTACCCTGGGAG+GGG | - | chr1.3:44487238-44487257 | MS.gene034951:CDS | 60.0% | |
| GTGCCAAGATCTACCCTGGG+AGG | - | chr1.3:44487236-44487255 | MS.gene034951:CDS | 60.0% | |
| !! | CCTAAGCTTGGTGGTGGAGG+AGG | - | chr1.3:44488799-44488818 | MS.gene034951:intron | 60.0% |
| !! | GGTCCTAAGCTTGGTGGTGG+AGG | - | chr1.3:44488796-44488815 | MS.gene034951:intron | 60.0% |
| CCCCCTCCCAGGGTAGATCT+TGG | + | chr1.3:44487242-44487261 | None:intergenic | 65.0% | |
| CTGGCAGCATCCCGAACCTC+TGG | + | chr1.3:44488488-44488507 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 44486882 | 44488831 | 44486882 | ID=MS.gene034951 |
| chr1.3 | mRNA | 44486882 | 44488831 | 44486882 | ID=MS.gene034951.t1;Parent=MS.gene034951 |
| chr1.3 | exon | 44488821 | 44488831 | 44488821 | ID=MS.gene034951.t1.exon1;Parent=MS.gene034951.t1 |
| chr1.3 | CDS | 44488821 | 44488831 | 44488821 | ID=cds.MS.gene034951.t1;Parent=MS.gene034951.t1 |
| chr1.3 | exon | 44488425 | 44488500 | 44488425 | ID=MS.gene034951.t1.exon2;Parent=MS.gene034951.t1 |
| chr1.3 | CDS | 44488425 | 44488500 | 44488425 | ID=cds.MS.gene034951.t1;Parent=MS.gene034951.t1 |
| chr1.3 | exon | 44488207 | 44488308 | 44488207 | ID=MS.gene034951.t1.exon3;Parent=MS.gene034951.t1 |
| chr1.3 | CDS | 44488207 | 44488308 | 44488207 | ID=cds.MS.gene034951.t1;Parent=MS.gene034951.t1 |
| chr1.3 | exon | 44487191 | 44487339 | 44487191 | ID=MS.gene034951.t1.exon4;Parent=MS.gene034951.t1 |
| chr1.3 | CDS | 44487191 | 44487339 | 44487191 | ID=cds.MS.gene034951.t1;Parent=MS.gene034951.t1 |
| chr1.3 | exon | 44486882 | 44487035 | 44486882 | ID=MS.gene034951.t1.exon5;Parent=MS.gene034951.t1 |
| chr1.3 | CDS | 44486882 | 44487035 | 44486882 | ID=cds.MS.gene034951.t1;Parent=MS.gene034951.t1 |
| Gene Sequence |
| Protein sequence |
