Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020921.t1 | AAB41556.1 | 99 | 312 | 3 | 0 | 1 | 312 | 1 | 312 | 1.70E-175 | 625.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020921.t1 | P26690 | 84.2 | 310 | 49 | 0 | 3 | 312 | 4 | 313 | 1.5e-153 | 543.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020921.t1 | Q40310 | 99.0 | 312 | 3 | 0 | 1 | 312 | 1 | 312 | 1.2e-175 | 625.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene020921 | MS.gene95889 | PPI |
MS.gene056487 | MS.gene020921 | PPI |
MS.gene50700 | MS.gene020921 | PPI |
MS.gene23359 | MS.gene020921 | PPI |
MS.gene020921 | MS.gene98697 | PPI |
MS.gene020921 | MS.gene93783 | PPI |
MS.gene020921 | MS.gene93058 | PPI |
MS.gene020921 | MS.gene55382 | PPI |
MS.gene020921 | MS.gene99693 | PPI |
MS.gene003638 | MS.gene020921 | PPI |
MS.gene62620 | MS.gene020921 | PPI |
MS.gene056488 | MS.gene020921 | PPI |
MS.gene020921 | MS.gene062932 | PPI |
MS.gene97981 | MS.gene020921 | PPI |
MS.gene020921 | MS.gene42146 | PPI |
MS.gene020921 | MS.gene42873 | PPI |
MS.gene020921 | MS.gene87111 | PPI |
MS.gene93059 | MS.gene020921 | PPI |
MS.gene020921 | MS.gene97980 | PPI |
MS.gene72560 | MS.gene020921 | PPI |
MS.gene040151 | MS.gene020921 | PPI |
MS.gene020921 | MS.gene53169 | PPI |
MS.gene020921 | MS.gene008793 | PPI |
MS.gene54933 | MS.gene020921 | PPI |
MS.gene95889 | MS.gene020921 | PPI |
MS.gene020921 | MS.gene024362 | PPI |
MS.gene020921 | MS.gene91446 | PPI |
MS.gene020921 | MS.gene008794 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020921.t1 | MTR_5g097900 | 98.397 | 312 | 5 | 0 | 1 | 312 | 1 | 312 | 0.0 | 637 |
MS.gene020921.t1 | MTR_5g097910 | 98.077 | 312 | 6 | 0 | 1 | 312 | 1 | 312 | 0.0 | 635 |
MS.gene020921.t1 | MTR_5g097940 | 98.077 | 312 | 6 | 0 | 1 | 312 | 1 | 312 | 0.0 | 635 |
MS.gene020921.t1 | MTR_3g083130 | 68.182 | 308 | 97 | 1 | 6 | 312 | 7 | 314 | 8.66e-162 | 453 |
MS.gene020921.t1 | MTR_0374s0050 | 62.951 | 305 | 110 | 3 | 1 | 302 | 1 | 305 | 3.16e-137 | 391 |
MS.gene020921.t1 | MTR_4g072320 | 52.174 | 299 | 133 | 4 | 1 | 297 | 1 | 291 | 1.07e-100 | 298 |
MS.gene020921.t1 | MTR_4g072350 | 51.155 | 303 | 136 | 5 | 20 | 311 | 17 | 318 | 6.14e-99 | 294 |
MS.gene020921.t1 | MTR_4g072360 | 50.000 | 300 | 144 | 4 | 1 | 297 | 1 | 297 | 1.39e-98 | 293 |
MS.gene020921.t1 | MTR_6g073110 | 49.835 | 303 | 146 | 4 | 1 | 300 | 1 | 300 | 3.89e-97 | 289 |
MS.gene020921.t1 | MTR_8g070095 | 41.901 | 284 | 162 | 2 | 19 | 300 | 15 | 297 | 4.18e-73 | 228 |
MS.gene020921.t1 | MTR_7g063580 | 43.382 | 272 | 142 | 3 | 49 | 311 | 83 | 351 | 4.68e-71 | 224 |
MS.gene020921.t1 | MTR_4g036845 | 40.351 | 285 | 165 | 4 | 18 | 300 | 12 | 293 | 5.20e-70 | 220 |
MS.gene020921.t1 | MTR_8g070115 | 42.361 | 288 | 155 | 4 | 19 | 302 | 15 | 295 | 1.92e-68 | 216 |
MS.gene020921.t1 | MTR_4g021350 | 43.206 | 287 | 148 | 5 | 19 | 300 | 15 | 291 | 2.70e-65 | 208 |
MS.gene020921.t1 | MTR_4g021410 | 42.295 | 305 | 148 | 6 | 19 | 312 | 16 | 303 | 5.85e-65 | 207 |
MS.gene020921.t1 | MTR_4g021350 | 43.060 | 281 | 145 | 5 | 19 | 294 | 15 | 285 | 3.63e-63 | 201 |
MS.gene020921.t1 | MTR_4g021410 | 43.223 | 273 | 135 | 4 | 48 | 312 | 6 | 266 | 1.59e-61 | 197 |
MS.gene020921.t1 | MTR_4g021450 | 42.908 | 282 | 147 | 3 | 19 | 300 | 16 | 283 | 2.84e-61 | 197 |
MS.gene020921.t1 | MTR_7g070500 | 37.500 | 280 | 167 | 5 | 20 | 298 | 23 | 295 | 8.22e-58 | 189 |
MS.gene020921.t1 | MTR_7g070500 | 37.956 | 274 | 162 | 5 | 20 | 292 | 23 | 289 | 3.11e-57 | 187 |
MS.gene020921.t1 | MTR_4g072060 | 38.436 | 307 | 174 | 6 | 15 | 310 | 6 | 308 | 1.13e-56 | 186 |
MS.gene020921.t1 | MTR_4g021410 | 42.259 | 239 | 118 | 4 | 82 | 312 | 1 | 227 | 6.52e-48 | 160 |
MS.gene020921.t1 | MTR_4g021450 | 43.379 | 219 | 112 | 2 | 82 | 300 | 1 | 207 | 3.31e-45 | 153 |
MS.gene020921.t1 | MTR_4g021450 | 43.038 | 158 | 87 | 1 | 143 | 300 | 10 | 164 | 1.25e-38 | 135 |
MS.gene020921.t1 | MTR_6g072650 | 43.537 | 147 | 47 | 5 | 176 | 311 | 13 | 134 | 2.32e-26 | 101 |
MS.gene020921.t1 | MTR_6g072710 | 45.133 | 113 | 57 | 2 | 191 | 300 | 1 | 111 | 5.94e-25 | 97.1 |
MS.gene020921.t1 | MTR_3g449790 | 26.625 | 323 | 159 | 12 | 15 | 285 | 42 | 338 | 6.56e-18 | 83.6 |
MS.gene020921.t1 | MTR_3g449790 | 26.140 | 329 | 159 | 13 | 15 | 285 | 42 | 344 | 1.45e-16 | 79.7 |
MS.gene020921.t1 | MTR_7g114990 | 26.736 | 288 | 147 | 13 | 41 | 289 | 52 | 314 | 1.17e-12 | 68.2 |
MS.gene020921.t1 | MTR_7g021850 | 25.087 | 287 | 161 | 9 | 41 | 292 | 43 | 310 | 6.07e-12 | 65.9 |
MS.gene020921.t1 | MTR_7g021680 | 24.742 | 291 | 166 | 9 | 36 | 292 | 38 | 309 | 5.94e-11 | 62.8 |
MS.gene020921.t1 | MTR_7g021820 | 24.742 | 291 | 166 | 9 | 36 | 292 | 38 | 309 | 5.94e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020921.t1 | AT1G59960 | 53.896 | 308 | 131 | 6 | 1 | 300 | 1 | 305 | 8.72e-113 | 330 |
MS.gene020921.t1 | AT1G59950 | 55.903 | 288 | 117 | 5 | 20 | 300 | 15 | 299 | 3.18e-105 | 310 |
MS.gene020921.t1 | AT2G37790 | 43.357 | 286 | 151 | 4 | 19 | 300 | 15 | 293 | 4.58e-76 | 236 |
MS.gene020921.t1 | AT2G37770 | 43.357 | 286 | 151 | 4 | 19 | 300 | 15 | 293 | 2.42e-75 | 234 |
MS.gene020921.t1 | AT5G62420 | 42.958 | 284 | 156 | 4 | 20 | 300 | 14 | 294 | 5.65e-73 | 228 |
MS.gene020921.t1 | AT2G37760 | 42.612 | 291 | 140 | 5 | 19 | 299 | 15 | 288 | 4.11e-72 | 224 |
MS.gene020921.t1 | AT2G37760 | 42.612 | 291 | 140 | 5 | 19 | 299 | 15 | 288 | 4.11e-72 | 224 |
MS.gene020921.t1 | AT5G01670 | 41.812 | 287 | 158 | 6 | 16 | 300 | 20 | 299 | 4.25e-72 | 226 |
MS.gene020921.t1 | AT2G37760 | 43.056 | 288 | 137 | 5 | 19 | 296 | 15 | 285 | 3.86e-71 | 222 |
MS.gene020921.t1 | AT2G37760 | 42.561 | 289 | 139 | 5 | 19 | 297 | 15 | 286 | 2.97e-70 | 221 |
MS.gene020921.t1 | AT2G37760 | 42.561 | 289 | 139 | 5 | 19 | 297 | 15 | 286 | 2.97e-70 | 221 |
MS.gene020921.t1 | AT3G53880 | 41.343 | 283 | 161 | 3 | 19 | 300 | 15 | 293 | 1.32e-68 | 216 |
MS.gene020921.t1 | AT3G53880 | 41.429 | 280 | 153 | 4 | 19 | 294 | 15 | 287 | 3.44e-66 | 210 |
MS.gene020921.t1 | AT5G01670 | 38.264 | 311 | 156 | 7 | 19 | 300 | 23 | 326 | 4.58e-66 | 211 |
MS.gene020921.t1 | AT2G21260 | 38.699 | 292 | 164 | 6 | 15 | 295 | 6 | 293 | 5.30e-65 | 207 |
MS.gene020921.t1 | AT2G21250 | 37.459 | 307 | 177 | 6 | 15 | 310 | 6 | 308 | 1.02e-63 | 204 |
MS.gene020921.t1 | AT2G37760 | 42.276 | 246 | 121 | 4 | 62 | 297 | 6 | 240 | 8.62e-58 | 187 |
MS.gene020921.t1 | AT2G37760 | 42.276 | 246 | 121 | 4 | 62 | 297 | 6 | 240 | 8.62e-58 | 187 |
MS.gene020921.t1 | AT2G37770 | 46.193 | 197 | 96 | 3 | 19 | 212 | 15 | 204 | 1.33e-52 | 174 |
MS.gene020921.t1 | AT2G21250 | 41.429 | 210 | 112 | 5 | 15 | 217 | 6 | 211 | 1.02e-46 | 157 |
MS.gene020921.t1 | AT2G21260 | 35.000 | 220 | 130 | 5 | 87 | 295 | 8 | 225 | 7.02e-40 | 140 |
MS.gene020921.t1 | AT1G06690 | 27.397 | 292 | 144 | 10 | 35 | 282 | 85 | 352 | 6.36e-20 | 89.4 |
MS.gene020921.t1 | AT5G53580 | 25.263 | 285 | 158 | 10 | 44 | 290 | 80 | 347 | 5.29e-16 | 78.2 |
MS.gene020921.t1 | AT1G60680 | 25.982 | 331 | 178 | 15 | 15 | 300 | 14 | 322 | 3.98e-14 | 72.4 |
MS.gene020921.t1 | AT1G60750 | 25.177 | 282 | 161 | 11 | 44 | 300 | 50 | 306 | 1.64e-11 | 64.7 |
Find 62 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATCAAAGATACACAAATTT+TGG | 0.147232 | 5.4:+77171210 | None:intergenic |
TTGCATTGCAAAACTCTCTA+AGG | 0.274401 | 5.4:+77171426 | None:intergenic |
TGGACTTGTACTTGATTCAT+TGG | 0.300645 | 5.4:-77171775 | MS.gene020921:CDS |
ATTGGAAATGTAAACTTTCC+AGG | 0.312952 | 5.4:+77171737 | None:intergenic |
GTGTCTATAACCTTGTTTGA+TGG | 0.333209 | 5.4:+77172219 | None:intergenic |
AGGCCTGGCTTGGTTGGTCC+AGG | 0.344379 | 5.4:+77171128 | None:intergenic |
AAAATTTGTGTATCTTTGAT+TGG | 0.361005 | 5.4:-77171208 | MS.gene020921:CDS |
CATTTGATGTGAAAGGTGTT+TGG | 0.375654 | 5.4:-77171694 | MS.gene020921:CDS |
CTTGGACTCACTAAAGCTAT+TGG | 0.375778 | 5.4:-77171647 | MS.gene020921:CDS |
CAAACACCTTTCACATCAAA+TGG | 0.378027 | 5.4:+77171695 | None:intergenic |
AAGAGATCTGCCACATCAAT+TGG | 0.378807 | 5.4:+77171719 | None:intergenic |
TCATTCTCCATAACCTCATT+TGG | 0.392662 | 5.4:+77171350 | None:intergenic |
TTGCACAAATTTCTCTAAGA+TGG | 0.398611 | 5.4:-77171289 | MS.gene020921:CDS |
TCTTTCCTTATCATAACTCT+TGG | 0.404407 | 5.4:+77171238 | None:intergenic |
CAGAGGACCAAATGAGGTTA+TGG | 0.408273 | 5.4:-77171357 | MS.gene020921:CDS |
ATTTGATGTGAAAGGTGTTT+GGG | 0.418218 | 5.4:-77171693 | MS.gene020921:CDS |
TTGAAAGAGGCAATTGAACT+TGG | 0.422526 | 5.4:-77172148 | MS.gene020921:CDS |
TGTTCCCAAGAGTTATGATA+AGG | 0.428240 | 5.4:-77171243 | MS.gene020921:CDS |
TTTGATACTGCTGCTGCCTA+TGG | 0.438326 | 5.4:-77172196 | MS.gene020921:CDS |
TCATTGAGGCCTGGCTTGGT+TGG | 0.438358 | 5.4:+77171122 | None:intergenic |
CTTTCCTTATCATAACTCTT+GGG | 0.442857 | 5.4:+77171239 | None:intergenic |
AAGCAAAATCGTTTGATCCC+TGG | 0.455139 | 5.4:-77171146 | MS.gene020921:CDS |
GACTCTTCAACTAGACTACT+TGG | 0.469433 | 5.4:-77171795 | MS.gene020921:CDS |
GAGGTCATTGAGGCCTGGCT+TGG | 0.476217 | 5.4:+77171118 | None:intergenic |
ATCCCTGGACCAACCAAGCC+AGG | 0.483424 | 5.4:-77171131 | MS.gene020921:CDS |
AAGTTTCAAGCTTTCCTCCA+TGG | 0.483539 | 5.4:+77171667 | None:intergenic |
GGCCTGGCTTGGTTGGTCCA+GGG | 0.485174 | 5.4:+77171129 | None:intergenic |
TGTTGGTAAGAACCTTGGTT+GGG | 0.497536 | 5.4:+77172332 | None:intergenic |
ATGGAGGAAAGCTTGAAACT+TGG | 0.498400 | 5.4:-77171665 | MS.gene020921:CDS |
TCTTGGTGAGGCTTTGAAAG+AGG | 0.504118 | 5.4:-77172161 | MS.gene020921:CDS |
TCTTTCTTACATGTGAAGTC+AGG | 0.515291 | 5.4:+77172265 | None:intergenic |
CTCTTACCATTTGATGTGAA+AGG | 0.516557 | 5.4:-77171701 | MS.gene020921:CDS |
CTTCAATTGACTAGAAGTGT+TGG | 0.534788 | 5.4:+77172315 | None:intergenic |
GAAGATGCCTGTGGTTGGAA+TGG | 0.535658 | 5.4:-77172296 | MS.gene020921:CDS |
TATGGTTCAGAACAAGCTCT+TGG | 0.542359 | 5.4:-77172178 | MS.gene020921:CDS |
TCATAGAGGTCATTGAGGCC+TGG | 0.545875 | 5.4:+77171113 | None:intergenic |
AAGAGCTTGTTCTGAACCAT+AGG | 0.546096 | 5.4:+77172180 | None:intergenic |
AGAAGTGTTGGTAAGAACCT+TGG | 0.552345 | 5.4:+77172327 | None:intergenic |
AAGATGCCTGTGGTTGGAAT+GGG | 0.555328 | 5.4:-77172295 | MS.gene020921:CDS |
TTGACATTTAGTCATCATAG+AGG | 0.571928 | 5.4:+77171099 | None:intergenic |
GTGTTGGTAAGAACCTTGGT+TGG | 0.585257 | 5.4:+77172331 | None:intergenic |
ATCATTGAAGCCATCAAACA+AGG | 0.587661 | 5.4:-77172229 | MS.gene020921:CDS |
GAAAGGTGTTTGGGAATCCA+TGG | 0.587744 | 5.4:-77171684 | MS.gene020921:CDS |
GCTGATCCCATTCCAACCAC+AGG | 0.587926 | 5.4:+77172289 | None:intergenic |
CTAAGATGGCTATATGAACA+AGG | 0.588672 | 5.4:-77171275 | MS.gene020921:CDS |
CTGCTTGCACCTTTCCTCAA+CGG | 0.589452 | 5.4:+77171377 | None:intergenic |
AGGTGGAGATGAACCTTGCA+TGG | 0.591438 | 5.4:-77171460 | MS.gene020921:CDS |
TGCAAGCAGAGGACCAAATG+AGG | 0.592065 | 5.4:-77171363 | MS.gene020921:CDS |
TGAATTACTTGATTGACTGC+AGG | 0.596137 | 5.4:+77171566 | None:intergenic |
AGTCATCATAGAGGTCATTG+AGG | 0.605914 | 5.4:+77171108 | None:intergenic |
GTTTACATTTCCAATTGATG+TGG | 0.608506 | 5.4:-77171729 | MS.gene020921:CDS |
CAATTGAAGATGCCTGTGGT+TGG | 0.621459 | 5.4:-77172301 | MS.gene020921:CDS |
TGGCCACTTAGTTCTCAACC+TGG | 0.621982 | 5.4:-77171755 | MS.gene020921:CDS |
AGAGCAGGAATAACAAGATG+AGG | 0.624425 | 5.4:+77172067 | None:intergenic |
TTTCCAGGTTGAGAACTAAG+TGG | 0.629025 | 5.4:+77171752 | None:intergenic |
AAAGAGATTGCAGATGCACA+TGG | 0.633321 | 5.4:-77171320 | MS.gene020921:CDS |
TTCAGAACAAGCTCTTGGTG+AGG | 0.637219 | 5.4:-77172173 | MS.gene020921:CDS |
TAGTCAATTGAAGATGCCTG+TGG | 0.637967 | 5.4:-77172305 | MS.gene020921:CDS |
TTGAGGAAAGGTGCAAGCAG+AGG | 0.639249 | 5.4:-77171374 | MS.gene020921:CDS |
TAGTGTTGAAATCCCAACCA+AGG | 0.690652 | 5.4:-77172344 | MS.gene020921:CDS |
ATTGACTGCAGGAAGAACAG+TGG | 0.718468 | 5.4:+77171577 | None:intergenic |
AGGTGTTTGGGAATCCATGG+AGG | 0.719619 | 5.4:-77171681 | MS.gene020921:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTTGTGTATCTTTGAT+TGG | - | chr5.4:77172247-77172266 | MS.gene020921:CDS | 20.0% |
!!! | AATCAAAGATACACAAATTT+TGG | + | chr5.4:77172248-77172267 | None:intergenic | 20.0% |
! | CAAGAAGTTAATCAAAACTT+AGG | + | chr5.4:77171924-77171943 | None:intergenic | 25.0% |
! | CAATGAACTCATATATTTAC+AGG | - | chr5.4:77171975-77171994 | MS.gene020921:intron | 25.0% |
! | GAGTATATTTAGATGACATT+TGG | - | chr5.4:77171456-77171475 | MS.gene020921:CDS | 25.0% |
! | TACACTTATTGAGATTAAAC+TGG | - | chr5.4:77171618-77171637 | MS.gene020921:CDS | 25.0% |
!!! | TTTTGTTACTTCCAAACTTT+GGG | - | chr5.4:77171351-77171370 | MS.gene020921:CDS | 25.0% |
!!! | TTTTTGTTACTTCCAAACTT+TGG | - | chr5.4:77171350-77171369 | MS.gene020921:CDS | 25.0% |
ATTGGAAATGTAAACTTTCC+AGG | + | chr5.4:77171721-77171740 | None:intergenic | 30.0% | |
CTTTCCTTATCATAACTCTT+GGG | + | chr5.4:77172219-77172238 | None:intergenic | 30.0% | |
GTTTACATTTCCAATTGATG+TGG | - | chr5.4:77171726-77171745 | MS.gene020921:CDS | 30.0% | |
TCTTTCCTTATCATAACTCT+TGG | + | chr5.4:77172220-77172239 | None:intergenic | 30.0% | |
TGAACTCATATATTTACAGG+TGG | - | chr5.4:77171978-77171997 | MS.gene020921:intron | 30.0% | |
! | ATTTTCAGTAACCCAAAGTT+TGG | + | chr5.4:77171365-77171384 | None:intergenic | 30.0% |
! | TTGCACAAATTTCTCTAAGA+TGG | - | chr5.4:77172166-77172185 | MS.gene020921:CDS | 30.0% |
!! | ATTTGATGTGAAAGGTGTTT+GGG | - | chr5.4:77171762-77171781 | MS.gene020921:CDS | 30.0% |
ATCATTGAAGCCATCAAACA+AGG | - | chr5.4:77171226-77171245 | MS.gene020921:CDS | 35.0% | |
CAAACACCTTTCACATCAAA+TGG | + | chr5.4:77171763-77171782 | None:intergenic | 35.0% | |
CTAAGATGGCTATATGAACA+AGG | - | chr5.4:77172180-77172199 | MS.gene020921:CDS | 35.0% | |
CTCTTACCATTTGATGTGAA+AGG | - | chr5.4:77171754-77171773 | MS.gene020921:CDS | 35.0% | |
TCATTCTCCATAACCTCATT+TGG | + | chr5.4:77172108-77172127 | None:intergenic | 35.0% | |
TCTTTCTTACATGTGAAGTC+AGG | + | chr5.4:77171193-77171212 | None:intergenic | 35.0% | |
TGAATTACTTGATTGACTGC+AGG | + | chr5.4:77171892-77171911 | None:intergenic | 35.0% | |
TGGACTTGTACTTGATTCAT+TGG | - | chr5.4:77171680-77171699 | MS.gene020921:CDS | 35.0% | |
TGTTCCCAAGAGTTATGATA+AGG | - | chr5.4:77172212-77172231 | MS.gene020921:CDS | 35.0% | |
TTGAAAGAGGCAATTGAACT+TGG | - | chr5.4:77171307-77171326 | MS.gene020921:CDS | 35.0% | |
TTGCATTGCAAAACTCTCTA+AGG | + | chr5.4:77172032-77172051 | None:intergenic | 35.0% | |
! | AGAGAGTTTTGCAATGCAAA+TGG | - | chr5.4:77172033-77172052 | MS.gene020921:intron | 35.0% |
! | CTTCAATTGACTAGAAGTGT+TGG | + | chr5.4:77171143-77171162 | None:intergenic | 35.0% |
! | GTGTCTATAACCTTGTTTGA+TGG | + | chr5.4:77171239-77171258 | None:intergenic | 35.0% |
!! | CATTTGATGTGAAAGGTGTT+TGG | - | chr5.4:77171761-77171780 | MS.gene020921:CDS | 35.0% |
!! | TTGAGAGATTTTTGAAGAGC+AGG | + | chr5.4:77171406-77171425 | None:intergenic | 35.0% |
AAAGAGATTGCAGATGCACA+TGG | - | chr5.4:77172135-77172154 | MS.gene020921:CDS | 40.0% | |
AAGAGATCTGCCACATCAAT+TGG | + | chr5.4:77171739-77171758 | None:intergenic | 40.0% | |
AAGCAAAATCGTTTGATCCC+TGG | - | chr5.4:77172309-77172328 | MS.gene020921:CDS | 40.0% | |
AAGTTTCAAGCTTTCCTCCA+TGG | + | chr5.4:77171791-77171810 | None:intergenic | 40.0% | |
AGAGCAGGAATAACAAGATG+AGG | + | chr5.4:77171391-77171410 | None:intergenic | 40.0% | |
AGTCATCATAGAGGTCATTG+AGG | + | chr5.4:77172350-77172369 | None:intergenic | 40.0% | |
ATGGAGGAAAGCTTGAAACT+TGG | - | chr5.4:77171790-77171809 | MS.gene020921:CDS | 40.0% | |
CTTGGACTCACTAAAGCTAT+TGG | - | chr5.4:77171808-77171827 | MS.gene020921:intron | 40.0% | |
GACTCTTCAACTAGACTACT+TGG | - | chr5.4:77171660-77171679 | MS.gene020921:CDS | 40.0% | |
TAGTCAATTGAAGATGCCTG+TGG | - | chr5.4:77171150-77171169 | MS.gene020921:CDS | 40.0% | |
TATGGTTCAGAACAAGCTCT+TGG | - | chr5.4:77171277-77171296 | MS.gene020921:CDS | 40.0% | |
! | AAGAGCTTGTTCTGAACCAT+AGG | + | chr5.4:77171278-77171297 | None:intergenic | 40.0% |
! | TAGTGTTGAAATCCCAACCA+AGG | - | chr5.4:77171111-77171130 | MS.gene020921:CDS | 40.0% |
! | TGTTGGTAAGAACCTTGGTT+GGG | + | chr5.4:77171126-77171145 | None:intergenic | 40.0% |
! | TTTCCAGGTTGAGAACTAAG+TGG | + | chr5.4:77171706-77171725 | None:intergenic | 40.0% |
!! | AGAAGTGTTGGTAAGAACCT+TGG | + | chr5.4:77171131-77171150 | None:intergenic | 40.0% |
!! | TGGATTTGTTGATTTCGTGC+AGG | - | chr5.4:77171638-77171657 | MS.gene020921:CDS | 40.0% |
AAGATGCCTGTGGTTGGAAT+GGG | - | chr5.4:77171160-77171179 | MS.gene020921:CDS | 45.0% | |
ATTGACTGCAGGAAGAACAG+TGG | + | chr5.4:77171881-77171900 | None:intergenic | 45.0% | |
CAATTGAAGATGCCTGTGGT+TGG | - | chr5.4:77171154-77171173 | MS.gene020921:CDS | 45.0% | |
CAGAGGACCAAATGAGGTTA+TGG | - | chr5.4:77172098-77172117 | MS.gene020921:CDS | 45.0% | |
TTCAGAACAAGCTCTTGGTG+AGG | - | chr5.4:77171282-77171301 | MS.gene020921:CDS | 45.0% | |
TTTGATACTGCTGCTGCCTA+TGG | - | chr5.4:77171259-77171278 | MS.gene020921:CDS | 45.0% | |
! | GGTTCTTTTGTTGCCATGCA+AGG | + | chr5.4:77172011-77172030 | None:intergenic | 45.0% |
! | GTGTTGGTAAGAACCTTGGT+TGG | + | chr5.4:77171127-77171146 | None:intergenic | 45.0% |
!! | GAAAGGTGTTTGGGAATCCA+TGG | - | chr5.4:77171771-77171790 | MS.gene020921:CDS | 45.0% |
!! | TCTTGGTGAGGCTTTGAAAG+AGG | - | chr5.4:77171294-77171313 | MS.gene020921:CDS | 45.0% |
AGGTGGAGATGAACCTTGCA+TGG | - | chr5.4:77171995-77172014 | MS.gene020921:intron | 50.0% | |
AGGTGTTTGGGAATCCATGG+AGG | - | chr5.4:77171774-77171793 | MS.gene020921:CDS | 50.0% | |
CTGCTTGCACCTTTCCTCAA+CGG | + | chr5.4:77172081-77172100 | None:intergenic | 50.0% | |
GAAGATGCCTGTGGTTGGAA+TGG | - | chr5.4:77171159-77171178 | MS.gene020921:CDS | 50.0% | |
TCATAGAGGTCATTGAGGCC+TGG | + | chr5.4:77172345-77172364 | None:intergenic | 50.0% | |
TGCAAGCAGAGGACCAAATG+AGG | - | chr5.4:77172092-77172111 | MS.gene020921:CDS | 50.0% | |
! | TAACTGCGTTTTCGCCGTTG+AGG | - | chr5.4:77172064-77172083 | MS.gene020921:CDS | 50.0% |
! | TGGCCACTTAGTTCTCAACC+TGG | - | chr5.4:77171700-77171719 | MS.gene020921:CDS | 50.0% |
! | TTGAGGAAAGGTGCAAGCAG+AGG | - | chr5.4:77172081-77172100 | MS.gene020921:CDS | 50.0% |
GCTGATCCCATTCCAACCAC+AGG | + | chr5.4:77171169-77171188 | None:intergenic | 55.0% | |
! | GCGTTTTCGCCGTTGAGGAA+AGG | - | chr5.4:77172069-77172088 | MS.gene020921:CDS | 55.0% |
!! | TCATTGAGGCCTGGCTTGGT+TGG | + | chr5.4:77172336-77172355 | None:intergenic | 55.0% |
ATCCCTGGACCAACCAAGCC+AGG | - | chr5.4:77172324-77172343 | MS.gene020921:CDS | 60.0% | |
GAGGTCATTGAGGCCTGGCT+TGG | + | chr5.4:77172340-77172359 | None:intergenic | 60.0% | |
!! | AGGCCTGGCTTGGTTGGTCC+AGG | + | chr5.4:77172330-77172349 | None:intergenic | 65.0% |
!! | GGCCTGGCTTGGTTGGTCCA+GGG | + | chr5.4:77172329-77172348 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 77171106 | 77172371 | 77171106 | ID=MS.gene020921 |
chr5.4 | mRNA | 77171106 | 77172371 | 77171106 | ID=MS.gene020921.t1;Parent=MS.gene020921 |
chr5.4 | exon | 77172052 | 77172371 | 77172052 | ID=MS.gene020921.t1.exon1;Parent=MS.gene020921.t1 |
chr5.4 | CDS | 77172052 | 77172371 | 77172052 | ID=cds.MS.gene020921.t1;Parent=MS.gene020921.t1 |
chr5.4 | exon | 77171574 | 77171817 | 77171574 | ID=MS.gene020921.t1.exon2;Parent=MS.gene020921.t1 |
chr5.4 | CDS | 77171574 | 77171817 | 77171574 | ID=cds.MS.gene020921.t1;Parent=MS.gene020921.t1 |
chr5.4 | exon | 77171106 | 77171480 | 77171106 | ID=MS.gene020921.t1.exon3;Parent=MS.gene020921.t1 |
chr5.4 | CDS | 77171106 | 77171480 | 77171106 | ID=cds.MS.gene020921.t1;Parent=MS.gene020921.t1 |
Gene Sequence |
Protein sequence |