Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020922.t1 | CAA57784.1 | 99 | 293 | 3 | 0 | 1 | 293 | 20 | 312 | 5.60E-165 | 590.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020922.t1 | P26690 | 86.7 | 293 | 39 | 0 | 1 | 293 | 21 | 313 | 1.7e-149 | 530.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020922.t1 | Q40310 | 99.0 | 293 | 3 | 0 | 1 | 293 | 20 | 312 | 4.0e-165 | 590.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020922 | MS.gene42873 | PPI |
| MS.gene020922 | MS.gene87111 | PPI |
| MS.gene020922 | MS.gene62620 | PPI |
| MS.gene020922 | MS.gene97980 | PPI |
| MS.gene020922 | MS.gene97981 | PPI |
| MS.gene020922 | MS.gene056487 | PPI |
| MS.gene020922 | MS.gene062932 | PPI |
| MS.gene020922 | MS.gene040151 | PPI |
| MS.gene020922 | MS.gene50700 | PPI |
| MS.gene020922 | MS.gene008793 | PPI |
| MS.gene040151 | MS.gene020922 | PPI |
| MS.gene020922 | MS.gene024362 | PPI |
| MS.gene020922 | MS.gene23359 | PPI |
| MS.gene020922 | MS.gene53169 | PPI |
| MS.gene020922 | MS.gene72560 | PPI |
| MS.gene020922 | MS.gene91446 | PPI |
| MS.gene020922 | MS.gene008794 | PPI |
| MS.gene020922 | MS.gene95889 | PPI |
| MS.gene020922 | MS.gene54933 | PPI |
| MS.gene020922 | MS.gene98697 | PPI |
| MS.gene020922 | MS.gene93059 | PPI |
| MS.gene020922 | MS.gene93783 | PPI |
| MS.gene020922 | MS.gene93058 | PPI |
| MS.gene020922 | MS.gene55382 | PPI |
| MS.gene020922 | MS.gene99693 | PPI |
| MS.gene020922 | MS.gene003638 | PPI |
| MS.gene020922 | MS.gene42146 | PPI |
| MS.gene020922 | MS.gene056488 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020922.t1 | MTR_5g097900 | 97.611 | 293 | 7 | 0 | 1 | 293 | 20 | 312 | 0.0 | 596 |
| MS.gene020922.t1 | MTR_5g097910 | 97.270 | 293 | 8 | 0 | 1 | 293 | 20 | 312 | 0.0 | 595 |
| MS.gene020922.t1 | MTR_5g097940 | 97.270 | 293 | 8 | 0 | 1 | 293 | 20 | 312 | 0.0 | 595 |
| MS.gene020922.t1 | MTR_3g083130 | 69.388 | 294 | 89 | 1 | 1 | 293 | 21 | 314 | 6.88e-158 | 442 |
| MS.gene020922.t1 | MTR_0374s0050 | 63.986 | 286 | 100 | 3 | 1 | 283 | 20 | 305 | 3.06e-131 | 375 |
| MS.gene020922.t1 | MTR_4g072320 | 53.571 | 280 | 123 | 3 | 1 | 278 | 17 | 291 | 1.44e-99 | 295 |
| MS.gene020922.t1 | MTR_4g072350 | 50.825 | 303 | 137 | 5 | 1 | 292 | 17 | 318 | 2.91e-98 | 291 |
| MS.gene020922.t1 | MTR_4g072360 | 51.246 | 281 | 134 | 3 | 1 | 278 | 17 | 297 | 6.42e-97 | 288 |
| MS.gene020922.t1 | MTR_6g073110 | 50.704 | 284 | 137 | 3 | 1 | 281 | 17 | 300 | 1.53e-95 | 285 |
| MS.gene020922.t1 | MTR_8g070095 | 42.403 | 283 | 160 | 2 | 1 | 281 | 16 | 297 | 3.27e-74 | 230 |
| MS.gene020922.t1 | MTR_7g063580 | 43.015 | 272 | 143 | 3 | 30 | 292 | 83 | 351 | 1.62e-70 | 222 |
| MS.gene020922.t1 | MTR_4g036845 | 40.989 | 283 | 162 | 4 | 1 | 281 | 14 | 293 | 2.40e-70 | 220 |
| MS.gene020922.t1 | MTR_8g070115 | 43.750 | 256 | 141 | 2 | 29 | 283 | 42 | 295 | 2.65e-69 | 218 |
| MS.gene020922.t1 | MTR_4g021350 | 43.007 | 286 | 148 | 5 | 1 | 281 | 16 | 291 | 1.74e-65 | 207 |
| MS.gene020922.t1 | MTR_4g021410 | 41.776 | 304 | 149 | 6 | 1 | 293 | 17 | 303 | 7.80e-64 | 203 |
| MS.gene020922.t1 | MTR_4g021350 | 42.857 | 280 | 145 | 5 | 1 | 275 | 16 | 285 | 3.34e-63 | 201 |
| MS.gene020922.t1 | MTR_4g021410 | 42.857 | 273 | 136 | 4 | 29 | 293 | 6 | 266 | 4.74e-61 | 195 |
| MS.gene020922.t1 | MTR_4g021450 | 42.349 | 281 | 148 | 3 | 1 | 281 | 17 | 283 | 2.96e-60 | 194 |
| MS.gene020922.t1 | MTR_7g070500 | 37.857 | 280 | 166 | 5 | 1 | 279 | 23 | 295 | 1.59e-58 | 190 |
| MS.gene020922.t1 | MTR_7g070500 | 38.321 | 274 | 161 | 5 | 1 | 273 | 23 | 289 | 4.87e-58 | 188 |
| MS.gene020922.t1 | MTR_4g072060 | 38.742 | 302 | 170 | 6 | 1 | 291 | 11 | 308 | 2.43e-56 | 184 |
| MS.gene020922.t1 | MTR_4g021410 | 41.841 | 239 | 119 | 4 | 63 | 293 | 1 | 227 | 3.29e-47 | 158 |
| MS.gene020922.t1 | MTR_4g021450 | 42.922 | 219 | 113 | 2 | 63 | 281 | 1 | 207 | 1.92e-44 | 151 |
| MS.gene020922.t1 | MTR_4g021450 | 43.038 | 158 | 87 | 1 | 124 | 281 | 10 | 164 | 2.15e-38 | 134 |
| MS.gene020922.t1 | MTR_6g072650 | 43.537 | 147 | 47 | 5 | 157 | 292 | 13 | 134 | 5.23e-26 | 100 |
| MS.gene020922.t1 | MTR_6g072710 | 45.133 | 113 | 57 | 2 | 172 | 281 | 1 | 111 | 5.87e-25 | 96.7 |
| MS.gene020922.t1 | MTR_3g449790 | 26.712 | 292 | 148 | 10 | 15 | 266 | 73 | 338 | 4.49e-18 | 83.6 |
| MS.gene020922.t1 | MTR_3g449790 | 26.174 | 298 | 148 | 11 | 15 | 266 | 73 | 344 | 9.36e-17 | 79.7 |
| MS.gene020922.t1 | MTR_7g114990 | 25.260 | 289 | 152 | 11 | 22 | 271 | 52 | 315 | 2.88e-13 | 69.7 |
| MS.gene020922.t1 | MTR_7g021850 | 25.087 | 287 | 161 | 9 | 22 | 273 | 43 | 310 | 1.28e-11 | 64.7 |
| MS.gene020922.t1 | MTR_1g102750 | 23.226 | 310 | 167 | 10 | 5 | 271 | 29 | 310 | 3.27e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020922.t1 | AT1G59960 | 55.903 | 288 | 117 | 5 | 1 | 281 | 21 | 305 | 1.24e-111 | 326 |
| MS.gene020922.t1 | AT1G59950 | 55.556 | 288 | 118 | 5 | 1 | 281 | 15 | 299 | 1.36e-104 | 308 |
| MS.gene020922.t1 | AT2G37770 | 44.211 | 285 | 148 | 4 | 1 | 281 | 16 | 293 | 1.55e-76 | 236 |
| MS.gene020922.t1 | AT2G37790 | 43.158 | 285 | 151 | 4 | 1 | 281 | 16 | 293 | 3.99e-76 | 235 |
| MS.gene020922.t1 | AT2G37760 | 43.463 | 283 | 147 | 4 | 1 | 280 | 16 | 288 | 2.42e-72 | 224 |
| MS.gene020922.t1 | AT2G37760 | 43.463 | 283 | 147 | 4 | 1 | 280 | 16 | 288 | 2.42e-72 | 224 |
| MS.gene020922.t1 | AT5G62420 | 42.958 | 284 | 156 | 4 | 1 | 281 | 14 | 294 | 6.18e-72 | 224 |
| MS.gene020922.t1 | AT2G37760 | 43.929 | 280 | 144 | 4 | 1 | 277 | 16 | 285 | 2.51e-71 | 222 |
| MS.gene020922.t1 | AT5G01670 | 42.049 | 283 | 155 | 6 | 1 | 281 | 24 | 299 | 2.68e-71 | 223 |
| MS.gene020922.t1 | AT2G37760 | 43.416 | 281 | 146 | 4 | 1 | 278 | 16 | 286 | 1.43e-70 | 221 |
| MS.gene020922.t1 | AT2G37760 | 43.416 | 281 | 146 | 4 | 1 | 278 | 16 | 286 | 1.43e-70 | 221 |
| MS.gene020922.t1 | AT3G53880 | 42.969 | 256 | 143 | 2 | 27 | 281 | 40 | 293 | 1.40e-69 | 218 |
| MS.gene020922.t1 | AT3G53880 | 42.800 | 250 | 140 | 2 | 27 | 275 | 40 | 287 | 3.77e-67 | 212 |
| MS.gene020922.t1 | AT5G01670 | 38.387 | 310 | 155 | 7 | 1 | 281 | 24 | 326 | 3.67e-65 | 208 |
| MS.gene020922.t1 | AT2G21260 | 38.676 | 287 | 161 | 6 | 1 | 276 | 11 | 293 | 2.85e-64 | 204 |
| MS.gene020922.t1 | AT2G21250 | 37.417 | 302 | 174 | 6 | 1 | 291 | 11 | 308 | 3.97e-63 | 201 |
| MS.gene020922.t1 | AT2G37760 | 43.515 | 239 | 128 | 3 | 43 | 278 | 6 | 240 | 7.35e-59 | 189 |
| MS.gene020922.t1 | AT2G37760 | 43.515 | 239 | 128 | 3 | 43 | 278 | 6 | 240 | 7.35e-59 | 189 |
| MS.gene020922.t1 | AT2G37770 | 46.939 | 196 | 94 | 3 | 1 | 193 | 16 | 204 | 5.25e-53 | 175 |
| MS.gene020922.t1 | AT2G21250 | 41.463 | 205 | 109 | 5 | 1 | 198 | 11 | 211 | 8.24e-46 | 155 |
| MS.gene020922.t1 | AT2G21260 | 34.545 | 220 | 131 | 5 | 68 | 276 | 8 | 225 | 4.00e-40 | 140 |
| MS.gene020922.t1 | AT1G06690 | 27.336 | 289 | 154 | 9 | 16 | 266 | 85 | 355 | 3.58e-20 | 89.7 |
| MS.gene020922.t1 | AT5G53580 | 24.912 | 285 | 157 | 11 | 25 | 270 | 80 | 346 | 1.40e-14 | 73.6 |
| MS.gene020922.t1 | AT1G60680 | 26.415 | 318 | 170 | 15 | 6 | 281 | 27 | 322 | 6.19e-13 | 68.6 |
| MS.gene020922.t1 | AT1G60750 | 25.532 | 282 | 160 | 12 | 25 | 281 | 50 | 306 | 2.68e-11 | 63.5 |
Find 59 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAAGATACACAAATTT+TGG | 0.147232 | 5.4:+77175988 | None:intergenic |
| TTGCATTGCAAAACTCTCTA+AGG | 0.274401 | 5.4:+77176204 | None:intergenic |
| ATTGGAAATGAAAACTTTCC+AGG | 0.287256 | 5.4:+77176515 | None:intergenic |
| TGGACTTGTACTTGATTCAT+TGG | 0.300645 | 5.4:-77176553 | MS.gene020922:CDS |
| GTGTCTATAACCTTGTTTGA+TGG | 0.333209 | 5.4:+77176994 | None:intergenic |
| CATTTGATGTGAAGGGTGTT+TGG | 0.341777 | 5.4:-77176472 | MS.gene020922:CDS |
| AACTCTTCAATTGGACTACT+TGG | 0.355732 | 5.4:-77176573 | MS.gene020922:CDS |
| AAAATTTGTGTATCTTTGAT+TGG | 0.361005 | 5.4:-77175986 | MS.gene020922:CDS |
| TCTTTCTTACATGTGAAGTC+AGG | 0.371382 | 5.4:+77177040 | None:intergenic |
| AGTCCGGGCTTGGTTGGTCC+AGG | 0.391423 | 5.4:+77175906 | None:intergenic |
| TTTGATACTGCTGCTGCATA+TGG | 0.391786 | 5.4:-77176971 | MS.gene020922:CDS |
| TCATTCTCCATAACCTCATT+TGG | 0.392662 | 5.4:+77176128 | None:intergenic |
| TTGCACAAATTTCTCTAAGA+TGG | 0.398611 | 5.4:-77176067 | MS.gene020922:CDS |
| TCTTTCCTTATCATAACTCT+TGG | 0.404407 | 5.4:+77176016 | None:intergenic |
| CAGAGGACCAAATGAGGTTA+TGG | 0.408273 | 5.4:-77176135 | MS.gene020922:CDS |
| ATTTGATGTGAAGGGTGTTT+GGG | 0.409991 | 5.4:-77176471 | MS.gene020922:CDS |
| ATCATAGAGGTCATTGAGTC+CGG | 0.411816 | 5.4:+77175890 | None:intergenic |
| CTTGGACTGACTAAAGCTAT+TGG | 0.416542 | 5.4:-77176425 | MS.gene020922:CDS |
| TTGAAAGAGGCAATTGAACT+TGG | 0.417383 | 5.4:-77176923 | MS.gene020922:CDS |
| AAGAGATCTGCCACATCAAT+TGG | 0.421446 | 5.4:+77176497 | None:intergenic |
| TGTTCCCAAGAGTTATGATA+AGG | 0.428240 | 5.4:-77176021 | MS.gene020922:CDS |
| TTCGTGCAGAACTCTTCAAT+TGG | 0.428301 | 5.4:-77176582 | MS.gene020922:intron |
| CAAACACCCTTCACATCAAA+TGG | 0.432538 | 5.4:+77176473 | None:intergenic |
| CTTTCCTTATCATAACTCTT+GGG | 0.442857 | 5.4:+77176017 | None:intergenic |
| GAGGTCATTGAGTCCGGGCT+TGG | 0.446240 | 5.4:+77175896 | None:intergenic |
| AAGCAAAATCGTTTGATCCC+TGG | 0.455139 | 5.4:-77175924 | MS.gene020922:CDS |
| ATCCCTGGACCAACCAAGCC+CGG | 0.482612 | 5.4:-77175909 | MS.gene020922:CDS |
| AAGTTTCAAGCTTTCCTCCA+TGG | 0.483539 | 5.4:+77176445 | None:intergenic |
| ATGGAGGAAAGCTTGAAACT+TGG | 0.498400 | 5.4:-77176443 | MS.gene020922:CDS |
| TATGGTTCAGAACAAGCTCT+TGG | 0.504539 | 5.4:-77176953 | MS.gene020922:CDS |
| TCTTGGAGAGGCTTTGAAAG+AGG | 0.506147 | 5.4:-77176936 | MS.gene020922:CDS |
| CTTTCTTACATGTGAAGTCA+GGG | 0.506502 | 5.4:+77177041 | None:intergenic |
| GAAGATGCCTGTGGTTGGAA+TGG | 0.535658 | 5.4:-77177071 | None:intergenic |
| AAAGAGATTGCAGATGCTCA+TGG | 0.540234 | 5.4:-77176098 | MS.gene020922:CDS |
| GTCCGGGCTTGGTTGGTCCA+GGG | 0.541777 | 5.4:+77175907 | None:intergenic |
| TCATTGAGTCCGGGCTTGGT+TGG | 0.547327 | 5.4:+77175900 | None:intergenic |
| AAGATGCCTGTGGTTGGAAT+GGG | 0.555328 | 5.4:-77177070 | MS.gene020922:CDS |
| GAAGGGTGTTTGGGAATCCA+TGG | 0.563941 | 5.4:-77176462 | MS.gene020922:CDS |
| TCTCTTGCCATTTGATGTGA+AGG | 0.569789 | 5.4:-77176480 | MS.gene020922:CDS |
| TCATAGAGGTCATTGAGTCC+GGG | 0.574712 | 5.4:+77175891 | None:intergenic |
| GCTGATCCCATTCCAACCAC+AGG | 0.587516 | 5.4:+77177064 | None:intergenic |
| ATCATTGAAGCCATCAAACA+AGG | 0.587661 | 5.4:-77177004 | MS.gene020922:CDS |
| CTAAGATGGCTATATGAACA+AGG | 0.588672 | 5.4:-77176053 | MS.gene020922:CDS |
| CTGCTTGCACCTTTCCTCAA+CGG | 0.589452 | 5.4:+77176155 | None:intergenic |
| AGGTGGAGATGAACCTTGCA+TGG | 0.591438 | 5.4:-77176238 | MS.gene020922:CDS |
| TGCAAGCAGAGGACCAAATG+AGG | 0.592065 | 5.4:-77176141 | MS.gene020922:CDS |
| TGAATTACTTGATTGACTGC+AGG | 0.596137 | 5.4:+77176344 | None:intergenic |
| TTTCTTACATGTGAAGTCAG+GGG | 0.620409 | 5.4:+77177042 | None:intergenic |
| CAATTGAAGATGCCTGTGGT+TGG | 0.621459 | 5.4:-77177076 | None:intergenic |
| TGGCCACTTAGTTCTCAACC+TGG | 0.621982 | 5.4:-77176533 | MS.gene020922:CDS |
| AGAGCAGGAATAACAAGATG+AGG | 0.624425 | 5.4:+77176842 | None:intergenic |
| TTTCCAGGTTGAGAACTAAG+TGG | 0.629025 | 5.4:+77176530 | None:intergenic |
| CTCTTGCCATTTGATGTGAA+GGG | 0.629600 | 5.4:-77176479 | MS.gene020922:CDS |
| TTGAGGAAAGGTGCAAGCAG+AGG | 0.639249 | 5.4:-77176152 | MS.gene020922:CDS |
| TTCAGAACAAGCTCTTGGAG+AGG | 0.639658 | 5.4:-77176948 | MS.gene020922:CDS |
| AAAGCTGTTCTCTAGTGACA+AGG | 0.667555 | 5.4:+77176900 | None:intergenic |
| GGGTGTTTGGGAATCCATGG+AGG | 0.706988 | 5.4:-77176459 | MS.gene020922:CDS |
| ATTGACTGCAGGAAGAACAG+TGG | 0.718468 | 5.4:+77176355 | None:intergenic |
| TAGTCAATTGAAGATGCCTG+TGG | 0.737799 | 5.4:-77177080 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGTGTATCTTTGAT+TGG | - | chr5.4:77176965-77176984 | MS.gene020922:CDS | 20.0% |
| !!! | AATCAAAGATACACAAATTT+TGG | + | chr5.4:77176966-77176985 | None:intergenic | 20.0% |
| ! | CAAGAAGTTAATCAAAACTT+AGG | + | chr5.4:77176642-77176661 | None:intergenic | 25.0% |
| ! | CAATGAACTCATATATTTAC+AGG | - | chr5.4:77176693-77176712 | MS.gene020922:intron | 25.0% |
| !!! | TTTTGTTACTTCCAAACTTT+GGG | - | chr5.4:77176072-77176091 | MS.gene020922:CDS | 25.0% |
| !!! | TTTTTGTTACTTCCAAACTT+TGG | - | chr5.4:77176071-77176090 | MS.gene020922:CDS | 25.0% |
| ATTGGAAATGAAAACTTTCC+AGG | + | chr5.4:77176439-77176458 | None:intergenic | 30.0% | |
| CTTTCCTTATCATAACTCTT+GGG | + | chr5.4:77176937-77176956 | None:intergenic | 30.0% | |
| TCTTTCCTTATCATAACTCT+TGG | + | chr5.4:77176938-77176957 | None:intergenic | 30.0% | |
| TGAACTCATATATTTACAGG+TGG | - | chr5.4:77176696-77176715 | MS.gene020922:intron | 30.0% | |
| ! | GTTTTCATTTCCAATTGATG+TGG | - | chr5.4:77176444-77176463 | MS.gene020922:CDS | 30.0% |
| ! | TTGCACAAATTTCTCTAAGA+TGG | - | chr5.4:77176884-77176903 | MS.gene020922:CDS | 30.0% |
| AACTCTTCAATTGGACTACT+TGG | - | chr5.4:77176378-77176397 | MS.gene020922:CDS | 35.0% | |
| ATCATTGAAGCCATCAAACA+AGG | - | chr5.4:77175947-77175966 | MS.gene020922:CDS | 35.0% | |
| CTAAGATGGCTATATGAACA+AGG | - | chr5.4:77176898-77176917 | MS.gene020922:CDS | 35.0% | |
| CTTTCTTACATGTGAAGTCA+GGG | + | chr5.4:77175913-77175932 | None:intergenic | 35.0% | |
| TCATTCTCCATAACCTCATT+TGG | + | chr5.4:77176826-77176845 | None:intergenic | 35.0% | |
| TCTTTCTTACATGTGAAGTC+AGG | + | chr5.4:77175914-77175933 | None:intergenic | 35.0% | |
| TGAATTACTTGATTGACTGC+AGG | + | chr5.4:77176610-77176629 | None:intergenic | 35.0% | |
| TGGACTTGTACTTGATTCAT+TGG | - | chr5.4:77176398-77176417 | MS.gene020922:CDS | 35.0% | |
| TGTTCCCAAGAGTTATGATA+AGG | - | chr5.4:77176930-77176949 | MS.gene020922:CDS | 35.0% | |
| TTGAAAGAGGCAATTGAACT+TGG | - | chr5.4:77176028-77176047 | MS.gene020922:CDS | 35.0% | |
| TTGCATTGCAAAACTCTCTA+AGG | + | chr5.4:77176750-77176769 | None:intergenic | 35.0% | |
| TTTCTTACATGTGAAGTCAG+GGG | + | chr5.4:77175912-77175931 | None:intergenic | 35.0% | |
| ! | AGAGAGTTTTGCAATGCAAA+TGG | - | chr5.4:77176751-77176770 | MS.gene020922:intron | 35.0% |
| ! | ATTTTCAGTGACCCAAAGTT+TGG | + | chr5.4:77176086-77176105 | None:intergenic | 35.0% |
| ! | GTGTCTATAACCTTGTTTGA+TGG | + | chr5.4:77175960-77175979 | None:intergenic | 35.0% |
| !! | ATTTGATGTGAAGGGTGTTT+GGG | - | chr5.4:77176480-77176499 | MS.gene020922:CDS | 35.0% |
| !! | TTGAGAGATTTTTGAAGAGC+AGG | + | chr5.4:77176127-77176146 | None:intergenic | 35.0% |
| AAAGAGATTGCAGATGCTCA+TGG | - | chr5.4:77176853-77176872 | MS.gene020922:CDS | 40.0% | |
| AAAGCTGTTCTCTAGTGACA+AGG | + | chr5.4:77176054-77176073 | None:intergenic | 40.0% | |
| AAGAGATCTGCCACATCAAT+TGG | + | chr5.4:77176457-77176476 | None:intergenic | 40.0% | |
| AAGCAAAATCGTTTGATCCC+TGG | - | chr5.4:77177027-77177046 | MS.gene020922:CDS | 40.0% | |
| AAGTTTCAAGCTTTCCTCCA+TGG | + | chr5.4:77176509-77176528 | None:intergenic | 40.0% | |
| AGAGCAGGAATAACAAGATG+AGG | + | chr5.4:77176112-77176131 | None:intergenic | 40.0% | |
| ATCATAGAGGTCATTGAGTC+CGG | + | chr5.4:77177064-77177083 | None:intergenic | 40.0% | |
| ATGGAGGAAAGCTTGAAACT+TGG | - | chr5.4:77176508-77176527 | MS.gene020922:CDS | 40.0% | |
| CAAACACCCTTCACATCAAA+TGG | + | chr5.4:77176481-77176500 | None:intergenic | 40.0% | |
| CTTGGACTGACTAAAGCTAT+TGG | - | chr5.4:77176526-77176545 | MS.gene020922:CDS | 40.0% | |
| TATGGTTCAGAACAAGCTCT+TGG | - | chr5.4:77175998-77176017 | MS.gene020922:CDS | 40.0% | |
| TTCGTGCAGAACTCTTCAAT+TGG | - | chr5.4:77176369-77176388 | MS.gene020922:CDS | 40.0% | |
| TTTGATACTGCTGCTGCATA+TGG | - | chr5.4:77175980-77175999 | MS.gene020922:CDS | 40.0% | |
| ! | CTCTTGCCATTTGATGTGAA+GGG | - | chr5.4:77176472-77176491 | MS.gene020922:CDS | 40.0% |
| ! | TCTCTTGCCATTTGATGTGA+AGG | - | chr5.4:77176471-77176490 | MS.gene020922:CDS | 40.0% |
| ! | TTTCCAGGTTGAGAACTAAG+TGG | + | chr5.4:77176424-77176443 | None:intergenic | 40.0% |
| !! | CATTTGATGTGAAGGGTGTT+TGG | - | chr5.4:77176479-77176498 | MS.gene020922:CDS | 40.0% |
| ATTGACTGCAGGAAGAACAG+TGG | + | chr5.4:77176599-77176618 | None:intergenic | 45.0% | |
| CAGAGGACCAAATGAGGTTA+TGG | - | chr5.4:77176816-77176835 | MS.gene020922:intron | 45.0% | |
| TCATAGAGGTCATTGAGTCC+GGG | + | chr5.4:77177063-77177082 | None:intergenic | 45.0% | |
| TTCAGAACAAGCTCTTGGAG+AGG | - | chr5.4:77176003-77176022 | MS.gene020922:CDS | 45.0% | |
| ! | GGTTCTTTTGTTGCCATGCA+AGG | + | chr5.4:77176729-77176748 | None:intergenic | 45.0% |
| !! | TCTTGGAGAGGCTTTGAAAG+AGG | - | chr5.4:77176015-77176034 | MS.gene020922:CDS | 45.0% |
| AGGTGGAGATGAACCTTGCA+TGG | - | chr5.4:77176713-77176732 | MS.gene020922:intron | 50.0% | |
| CTGCTTGCACCTTTCCTCAA+CGG | + | chr5.4:77176799-77176818 | None:intergenic | 50.0% | |
| TGCAAGCAGAGGACCAAATG+AGG | - | chr5.4:77176810-77176829 | MS.gene020922:intron | 50.0% | |
| ! | TAACTGCGTTTTCGCCGTTG+AGG | - | chr5.4:77176782-77176801 | MS.gene020922:intron | 50.0% |
| ! | TGGCCACTTAGTTCTCAACC+TGG | - | chr5.4:77176418-77176437 | MS.gene020922:CDS | 50.0% |
| ! | TTGAGGAAAGGTGCAAGCAG+AGG | - | chr5.4:77176799-77176818 | MS.gene020922:intron | 50.0% |
| !! | GAAGGGTGTTTGGGAATCCA+TGG | - | chr5.4:77176489-77176508 | MS.gene020922:CDS | 50.0% |
| GCTGATCCCATTCCAACCAC+AGG | + | chr5.4:77175890-77175909 | None:intergenic | 55.0% | |
| GGGTGTTTGGGAATCCATGG+AGG | - | chr5.4:77176492-77176511 | MS.gene020922:CDS | 55.0% | |
| ! | GCGTTTTCGCCGTTGAGGAA+AGG | - | chr5.4:77176787-77176806 | MS.gene020922:intron | 55.0% |
| ! | TCATTGAGTCCGGGCTTGGT+TGG | + | chr5.4:77177054-77177073 | None:intergenic | 55.0% |
| ATCCCTGGACCAACCAAGCC+CGG | - | chr5.4:77177042-77177061 | MS.gene020922:CDS | 60.0% | |
| GAGGTCATTGAGTCCGGGCT+TGG | + | chr5.4:77177058-77177077 | None:intergenic | 60.0% | |
| ! | AGTCCGGGCTTGGTTGGTCC+AGG | + | chr5.4:77177048-77177067 | None:intergenic | 65.0% |
| ! | GTCCGGGCTTGGTTGGTCCA+GGG | + | chr5.4:77177047-77177066 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 77175884 | 77177089 | 77175884 | ID=MS.gene020922 |
| chr5.4 | mRNA | 77175884 | 77177089 | 77175884 | ID=MS.gene020922.t1;Parent=MS.gene020922 |
| chr5.4 | exon | 77176827 | 77177089 | 77176827 | ID=MS.gene020922.t1.exon1;Parent=MS.gene020922.t1 |
| chr5.4 | CDS | 77176827 | 77177089 | 77176827 | ID=cds.MS.gene020922.t1;Parent=MS.gene020922.t1 |
| chr5.4 | exon | 77176352 | 77176595 | 77176352 | ID=MS.gene020922.t1.exon2;Parent=MS.gene020922.t1 |
| chr5.4 | CDS | 77176352 | 77176595 | 77176352 | ID=cds.MS.gene020922.t1;Parent=MS.gene020922.t1 |
| chr5.4 | exon | 77175884 | 77176258 | 77175884 | ID=MS.gene020922.t1.exon3;Parent=MS.gene020922.t1 |
| chr5.4 | CDS | 77175884 | 77176258 | 77175884 | ID=cds.MS.gene020922.t1;Parent=MS.gene020922.t1 |
| Gene Sequence |
| Protein sequence |
