Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020923.t1 | CAA57783.1 | 99.3 | 293 | 2 | 0 | 1 | 293 | 20 | 312 | 1.90E-165 | 591.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020923.t1 | P26690 | 86.7 | 293 | 39 | 0 | 1 | 293 | 21 | 313 | 1.3e-149 | 530.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020923.t1 | Q43555 | 99.3 | 293 | 2 | 0 | 1 | 293 | 20 | 312 | 1.4e-165 | 591.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020923 | MS.gene95889 | PPI |
| MS.gene020923 | MS.gene98697 | PPI |
| MS.gene020923 | MS.gene93783 | PPI |
| MS.gene020923 | MS.gene93058 | PPI |
| MS.gene020923 | MS.gene55382 | PPI |
| MS.gene50700 | MS.gene020923 | PPI |
| MS.gene020923 | MS.gene99693 | PPI |
| MS.gene23359 | MS.gene020923 | PPI |
| MS.gene020923 | MS.gene42146 | PPI |
| MS.gene003638 | MS.gene020923 | PPI |
| MS.gene020923 | MS.gene42873 | PPI |
| MS.gene020923 | MS.gene87111 | PPI |
| MS.gene62620 | MS.gene020923 | PPI |
| MS.gene056488 | MS.gene020923 | PPI |
| MS.gene020923 | MS.gene97980 | PPI |
| MS.gene020923 | MS.gene062932 | PPI |
| MS.gene020923 | MS.gene008793 | PPI |
| MS.gene93059 | MS.gene020923 | PPI |
| MS.gene020923 | MS.gene024362 | PPI |
| MS.gene72560 | MS.gene020923 | PPI |
| MS.gene040151 | MS.gene020923 | PPI |
| MS.gene97981 | MS.gene020923 | PPI |
| MS.gene020923 | MS.gene53169 | PPI |
| MS.gene54933 | MS.gene020923 | PPI |
| MS.gene95889 | MS.gene020923 | PPI |
| MS.gene020923 | MS.gene91446 | PPI |
| MS.gene056487 | MS.gene020923 | PPI |
| MS.gene020923 | MS.gene008794 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020923.t1 | MTR_5g097900 | 97.270 | 293 | 8 | 0 | 1 | 293 | 20 | 312 | 0.0 | 592 |
| MS.gene020923.t1 | MTR_5g097910 | 96.928 | 293 | 9 | 0 | 1 | 293 | 20 | 312 | 0.0 | 590 |
| MS.gene020923.t1 | MTR_5g097940 | 96.928 | 293 | 9 | 0 | 1 | 293 | 20 | 312 | 0.0 | 590 |
| MS.gene020923.t1 | MTR_3g083130 | 69.728 | 294 | 88 | 1 | 1 | 293 | 21 | 314 | 3.86e-159 | 446 |
| MS.gene020923.t1 | MTR_0374s0050 | 64.336 | 286 | 99 | 3 | 1 | 283 | 20 | 305 | 1.97e-132 | 378 |
| MS.gene020923.t1 | MTR_4g072320 | 53.929 | 280 | 122 | 3 | 1 | 278 | 17 | 291 | 9.97e-101 | 298 |
| MS.gene020923.t1 | MTR_4g072350 | 51.155 | 303 | 136 | 5 | 1 | 292 | 17 | 318 | 2.08e-99 | 295 |
| MS.gene020923.t1 | MTR_4g072360 | 51.601 | 281 | 133 | 3 | 1 | 278 | 17 | 297 | 3.70e-98 | 291 |
| MS.gene020923.t1 | MTR_6g073110 | 50.704 | 284 | 137 | 3 | 1 | 281 | 17 | 300 | 4.42e-96 | 286 |
| MS.gene020923.t1 | MTR_8g070095 | 42.756 | 283 | 159 | 2 | 1 | 281 | 16 | 297 | 6.87e-75 | 232 |
| MS.gene020923.t1 | MTR_4g036845 | 41.696 | 283 | 160 | 4 | 1 | 281 | 14 | 293 | 3.09e-72 | 225 |
| MS.gene020923.t1 | MTR_7g063580 | 43.015 | 272 | 143 | 3 | 30 | 292 | 83 | 351 | 1.39e-70 | 222 |
| MS.gene020923.t1 | MTR_8g070115 | 44.141 | 256 | 140 | 2 | 29 | 283 | 42 | 295 | 3.82e-70 | 219 |
| MS.gene020923.t1 | MTR_4g021350 | 42.905 | 296 | 152 | 6 | 1 | 291 | 16 | 299 | 3.03e-66 | 209 |
| MS.gene020923.t1 | MTR_4g021350 | 43.214 | 280 | 144 | 5 | 1 | 275 | 16 | 285 | 4.78e-64 | 203 |
| MS.gene020923.t1 | MTR_4g021410 | 41.447 | 304 | 150 | 6 | 1 | 293 | 17 | 303 | 4.83e-63 | 201 |
| MS.gene020923.t1 | MTR_4g021410 | 42.491 | 273 | 137 | 4 | 29 | 293 | 6 | 266 | 3.43e-60 | 192 |
| MS.gene020923.t1 | MTR_4g021450 | 41.993 | 281 | 149 | 3 | 1 | 281 | 17 | 283 | 2.00e-59 | 192 |
| MS.gene020923.t1 | MTR_7g070500 | 37.857 | 280 | 166 | 5 | 1 | 279 | 23 | 295 | 3.04e-58 | 189 |
| MS.gene020923.t1 | MTR_4g072060 | 39.073 | 302 | 169 | 6 | 1 | 291 | 11 | 308 | 7.44e-58 | 188 |
| MS.gene020923.t1 | MTR_7g070500 | 38.321 | 274 | 161 | 5 | 1 | 273 | 23 | 289 | 1.07e-57 | 187 |
| MS.gene020923.t1 | MTR_4g021410 | 41.423 | 239 | 120 | 4 | 63 | 293 | 1 | 227 | 2.48e-46 | 155 |
| MS.gene020923.t1 | MTR_4g021450 | 42.466 | 219 | 114 | 2 | 63 | 281 | 1 | 207 | 1.52e-43 | 148 |
| MS.gene020923.t1 | MTR_4g021450 | 42.405 | 158 | 88 | 1 | 124 | 281 | 10 | 164 | 1.41e-37 | 132 |
| MS.gene020923.t1 | MTR_6g072650 | 44.218 | 147 | 46 | 5 | 157 | 292 | 13 | 134 | 2.69e-27 | 103 |
| MS.gene020923.t1 | MTR_6g072710 | 46.018 | 113 | 56 | 2 | 172 | 281 | 1 | 111 | 6.34e-26 | 99.4 |
| MS.gene020923.t1 | MTR_3g449790 | 26.712 | 292 | 148 | 10 | 15 | 266 | 73 | 338 | 5.14e-18 | 83.6 |
| MS.gene020923.t1 | MTR_3g449790 | 26.174 | 298 | 148 | 11 | 15 | 266 | 73 | 344 | 1.16e-16 | 79.7 |
| MS.gene020923.t1 | MTR_3g092140 | 23.256 | 301 | 179 | 10 | 17 | 279 | 71 | 357 | 9.96e-14 | 71.6 |
| MS.gene020923.t1 | MTR_7g114990 | 25.260 | 289 | 152 | 11 | 22 | 271 | 52 | 315 | 2.22e-13 | 70.1 |
| MS.gene020923.t1 | MTR_7g021850 | 25.087 | 287 | 161 | 9 | 22 | 273 | 43 | 310 | 8.98e-12 | 65.1 |
| MS.gene020923.t1 | MTR_1g102750 | 23.226 | 310 | 167 | 10 | 5 | 271 | 29 | 310 | 4.61e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020923.t1 | AT1G59960 | 55.903 | 288 | 117 | 5 | 1 | 281 | 21 | 305 | 2.88e-112 | 327 |
| MS.gene020923.t1 | AT1G59950 | 55.903 | 288 | 117 | 5 | 1 | 281 | 15 | 299 | 6.98e-106 | 311 |
| MS.gene020923.t1 | AT2G37770 | 44.561 | 285 | 147 | 4 | 1 | 281 | 16 | 293 | 1.89e-77 | 238 |
| MS.gene020923.t1 | AT2G37790 | 43.158 | 285 | 151 | 4 | 1 | 281 | 16 | 293 | 1.29e-76 | 236 |
| MS.gene020923.t1 | AT5G62420 | 43.310 | 284 | 155 | 4 | 1 | 281 | 14 | 294 | 3.58e-73 | 228 |
| MS.gene020923.t1 | AT2G37760 | 43.463 | 283 | 147 | 4 | 1 | 280 | 16 | 288 | 3.01e-72 | 224 |
| MS.gene020923.t1 | AT2G37760 | 43.463 | 283 | 147 | 4 | 1 | 280 | 16 | 288 | 3.01e-72 | 224 |
| MS.gene020923.t1 | AT5G01670 | 41.696 | 283 | 156 | 6 | 1 | 281 | 24 | 299 | 1.70e-71 | 223 |
| MS.gene020923.t1 | AT2G37760 | 43.929 | 280 | 144 | 4 | 1 | 277 | 16 | 285 | 2.83e-71 | 222 |
| MS.gene020923.t1 | AT2G37760 | 43.262 | 282 | 147 | 4 | 1 | 279 | 16 | 287 | 1.45e-70 | 221 |
| MS.gene020923.t1 | AT2G37760 | 43.262 | 282 | 147 | 4 | 1 | 279 | 16 | 287 | 1.45e-70 | 221 |
| MS.gene020923.t1 | AT3G53880 | 43.359 | 256 | 142 | 2 | 27 | 281 | 40 | 293 | 2.51e-70 | 220 |
| MS.gene020923.t1 | AT3G53880 | 43.200 | 250 | 139 | 2 | 27 | 275 | 40 | 287 | 5.87e-68 | 214 |
| MS.gene020923.t1 | AT2G21260 | 39.024 | 287 | 160 | 6 | 1 | 276 | 11 | 293 | 6.22e-66 | 209 |
| MS.gene020923.t1 | AT5G01670 | 38.065 | 310 | 156 | 7 | 1 | 281 | 24 | 326 | 1.58e-65 | 209 |
| MS.gene020923.t1 | AT2G21250 | 37.748 | 302 | 173 | 6 | 1 | 291 | 11 | 308 | 1.51e-64 | 205 |
| MS.gene020923.t1 | AT2G37760 | 43.333 | 240 | 129 | 3 | 43 | 279 | 6 | 241 | 1.12e-58 | 189 |
| MS.gene020923.t1 | AT2G37760 | 43.333 | 240 | 129 | 3 | 43 | 279 | 6 | 241 | 1.12e-58 | 189 |
| MS.gene020923.t1 | AT2G37770 | 47.449 | 196 | 93 | 3 | 1 | 193 | 16 | 204 | 1.33e-53 | 176 |
| MS.gene020923.t1 | AT2G21250 | 41.951 | 205 | 108 | 5 | 1 | 198 | 11 | 211 | 1.05e-46 | 157 |
| MS.gene020923.t1 | AT2G21260 | 35.000 | 220 | 130 | 5 | 68 | 276 | 8 | 225 | 1.03e-41 | 144 |
| MS.gene020923.t1 | AT1G06690 | 27.336 | 289 | 154 | 9 | 16 | 266 | 85 | 355 | 4.66e-20 | 89.4 |
| MS.gene020923.t1 | AT5G53580 | 25.177 | 282 | 154 | 11 | 25 | 267 | 80 | 343 | 7.29e-15 | 74.3 |
| MS.gene020923.t1 | AT1G60680 | 26.730 | 318 | 169 | 15 | 6 | 281 | 27 | 322 | 5.74e-14 | 71.6 |
| MS.gene020923.t1 | AT1G60690 | 24.768 | 323 | 168 | 14 | 6 | 281 | 27 | 321 | 1.44e-11 | 64.7 |
| MS.gene020923.t1 | AT1G60750 | 25.532 | 282 | 160 | 12 | 25 | 281 | 50 | 306 | 3.42e-11 | 63.5 |
Find 60 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAAGATACGTAAATTT+TGG | 0.162109 | 5.4:-77181762 | None:intergenic |
| ATTGGAAATGAAAACTTTCC+AGG | 0.287256 | 5.4:-77181221 | None:intergenic |
| TGGACTTGTACTTGATTCAT+TGG | 0.300645 | 5.4:+77181183 | MS.gene020923:CDS |
| GTGTCTATAACCTTGTTTGA+TGG | 0.333209 | 5.4:-77180760 | None:intergenic |
| CATTTGATGTGAAGGGTGTT+TGG | 0.341777 | 5.4:+77181264 | MS.gene020923:CDS |
| AACTCTTCAATTGGACTACT+TGG | 0.355732 | 5.4:+77181163 | MS.gene020923:CDS |
| TCATTCTCCATAACTTCATT+TGG | 0.362803 | 5.4:-77181622 | None:intergenic |
| CTGCTTGCACCTTTCCTCAA+TGG | 0.366580 | 5.4:-77181595 | None:intergenic |
| TCTTTCTTACATGTGAAGTC+AGG | 0.371382 | 5.4:-77180714 | None:intergenic |
| AAAATTTACGTATCTTTGAT+TGG | 0.375055 | 5.4:+77181764 | MS.gene020923:CDS |
| AGTCCGGGCTTGGTTGGTCC+AGG | 0.391423 | 5.4:-77181844 | None:intergenic |
| TTTGATACTGCTGCTGCATA+TGG | 0.391786 | 5.4:+77180783 | MS.gene020923:CDS |
| TTGCACAAATTTCTCTAAGA+TGG | 0.398611 | 5.4:+77181683 | MS.gene020923:CDS |
| ATTTGATGTGAAGGGTGTTT+GGG | 0.409991 | 5.4:+77181265 | MS.gene020923:CDS |
| ATCATAGAGGTCATTGAGTC+CGG | 0.411816 | 5.4:-77181860 | None:intergenic |
| CTTGGACTGACTAAAGCTAT+TGG | 0.416542 | 5.4:+77181311 | MS.gene020923:CDS |
| TTGAAAGAGGCAATTGAACT+TGG | 0.417383 | 5.4:+77180831 | MS.gene020923:CDS |
| AAGAGATCTGCCACATCAAT+TGG | 0.421446 | 5.4:-77181239 | None:intergenic |
| TTCGTGCAGAACTCTTCAAT+TGG | 0.428301 | 5.4:+77181154 | MS.gene020923:intron |
| TCTCTCCTTATCATAGCTCT+TGG | 0.432328 | 5.4:-77181734 | None:intergenic |
| CAAACACCCTTCACATCAAA+TGG | 0.432538 | 5.4:-77181263 | None:intergenic |
| TGTTCCCAAGAGCTATGATA+AGG | 0.434816 | 5.4:+77181729 | MS.gene020923:CDS |
| CTCTCCTTATCATAGCTCTT+GGG | 0.442349 | 5.4:-77181733 | None:intergenic |
| GAGGTCATTGAGTCCGGGCT+TGG | 0.446240 | 5.4:-77181854 | None:intergenic |
| CAGGGGACCAAATGAAGTTA+TGG | 0.449659 | 5.4:+77181615 | MS.gene020923:CDS |
| AAGCAAAATCGTTTGATCCC+TGG | 0.455139 | 5.4:+77181826 | MS.gene020923:CDS |
| CATTGAGGAAAGGTGCAAGC+AGG | 0.481117 | 5.4:+77181596 | MS.gene020923:CDS |
| ATCCCTGGACCAACCAAGCC+CGG | 0.482612 | 5.4:+77181841 | MS.gene020923:CDS |
| AAGTTTCAAGCTTTCCTCCA+TGG | 0.483539 | 5.4:-77181291 | None:intergenic |
| TGAATTACTTGATTGACTGC+TGG | 0.489360 | 5.4:-77181392 | None:intergenic |
| ATGGAGGAAAGCTTGAAACT+TGG | 0.498400 | 5.4:+77181293 | MS.gene020923:CDS |
| TATGGTTCAGAACAAGCTCT+TGG | 0.504539 | 5.4:+77180801 | MS.gene020923:CDS |
| TCTTGGAGAGGCTTTGAAAG+AGG | 0.506147 | 5.4:+77180818 | MS.gene020923:CDS |
| CTTTCTTACATGTGAAGTCA+GGG | 0.506502 | 5.4:-77180713 | None:intergenic |
| GAAGATGCCTGTGGTTGGAA+TGG | 0.535658 | 5.4:+77180683 | None:intergenic |
| AAAGAGATTGCAGATGCTCA+TGG | 0.540234 | 5.4:+77181652 | MS.gene020923:CDS |
| GTCCGGGCTTGGTTGGTCCA+GGG | 0.541777 | 5.4:-77181843 | None:intergenic |
| TCATTGAGTCCGGGCTTGGT+TGG | 0.547327 | 5.4:-77181850 | None:intergenic |
| TCTATATTTAGTCATCATAG+AGG | 0.553846 | 5.4:-77181873 | None:intergenic |
| AAGATGCCTGTGGTTGGAAT+GGG | 0.555328 | 5.4:+77180684 | None:intergenic |
| ATTGAGGAAAGGTGCAAGCA+GGG | 0.556202 | 5.4:+77181597 | MS.gene020923:CDS |
| GAAGGGTGTTTGGGAATCCA+TGG | 0.563941 | 5.4:+77181274 | MS.gene020923:CDS |
| TCTCTTGCCATTTGATGTGA+AGG | 0.569789 | 5.4:+77181256 | MS.gene020923:CDS |
| TCATAGAGGTCATTGAGTCC+GGG | 0.574712 | 5.4:-77181859 | None:intergenic |
| AGGTGGAGATGAACCTTGCA+TGG | 0.584406 | 5.4:+77181512 | MS.gene020923:intron |
| GCTGATCCCATTCCAACCAC+AGG | 0.587516 | 5.4:-77180690 | None:intergenic |
| ATCATTGAAGCCATCAAACA+AGG | 0.587661 | 5.4:+77180750 | MS.gene020923:CDS |
| CTAAGATGGCTATATGAACA+AGG | 0.588672 | 5.4:+77181697 | MS.gene020923:CDS |
| TTTCTTACATGTGAAGTCAG+GGG | 0.620409 | 5.4:-77180712 | None:intergenic |
| CAATTGAAGATGCCTGTGGT+TGG | 0.621459 | 5.4:+77180678 | None:intergenic |
| TGGCCACTTAGTTCTCAACC+TGG | 0.621982 | 5.4:+77181203 | MS.gene020923:CDS |
| AGAGCAGGAATAACAAGATG+AGG | 0.624425 | 5.4:-77180912 | None:intergenic |
| TTTCCAGGTTGAGAACTAAG+TGG | 0.629025 | 5.4:-77181206 | None:intergenic |
| CTCTTGCCATTTGATGTGAA+GGG | 0.629600 | 5.4:+77181257 | MS.gene020923:CDS |
| TTCAGAACAAGCTCTTGGAG+AGG | 0.639658 | 5.4:+77180806 | MS.gene020923:CDS |
| TTGAGGAAAGGTGCAAGCAG+GGG | 0.653623 | 5.4:+77181598 | MS.gene020923:CDS |
| AAAGCTGTTCTCTAGTGACA+AGG | 0.667555 | 5.4:-77180854 | None:intergenic |
| GGGTGTTTGGGAATCCATGG+AGG | 0.706988 | 5.4:+77181277 | MS.gene020923:CDS |
| ATTGACTGCTGGAAGAACAG+TGG | 0.720759 | 5.4:-77181381 | None:intergenic |
| TAGTCAATTGAAGATGCCTG+TGG | 0.737799 | 5.4:+77180674 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTACGTATCTTTGAT+TGG | + | chr5.4:77181764-77181783 | MS.gene020923:CDS | 20.0% |
| !! | CAATGAACTCATATATTTAT+AGG | + | chr5.4:77181492-77181511 | MS.gene020923:intron | 20.0% |
| !!! | AATCAAAGATACGTAAATTT+TGG | - | chr5.4:77181765-77181784 | None:intergenic | 20.0% |
| !!! | GTTTAAGTTAATCAAAAGTT+AGG | - | chr5.4:77181427-77181446 | None:intergenic | 20.0% |
| ! | TGAACTCATATATTTATAGG+TGG | + | chr5.4:77181495-77181514 | MS.gene020923:intron | 25.0% |
| !!! | TTTTGTTACTTCCAAACTTT+GGG | + | chr5.4:77180875-77180894 | MS.gene020923:CDS | 25.0% |
| !!! | TTTTTGTTACTTCCAAACTT+TGG | + | chr5.4:77180874-77180893 | MS.gene020923:CDS | 25.0% |
| ATTGGAAATGAAAACTTTCC+AGG | - | chr5.4:77181224-77181243 | None:intergenic | 30.0% | |
| TCATTCTCCATAACTTCATT+TGG | - | chr5.4:77181625-77181644 | None:intergenic | 30.0% | |
| ! | GTTTTCATTTCCAATTGATG+TGG | + | chr5.4:77181229-77181248 | MS.gene020923:CDS | 30.0% |
| ! | TTGCACAAATTTCTCTAAGA+TGG | + | chr5.4:77181683-77181702 | MS.gene020923:CDS | 30.0% |
| AACTCTTCAATTGGACTACT+TGG | + | chr5.4:77181163-77181182 | MS.gene020923:CDS | 35.0% | |
| ATCATTGAAGCCATCAAACA+AGG | + | chr5.4:77180750-77180769 | MS.gene020923:CDS | 35.0% | |
| CTAAGATGGCTATATGAACA+AGG | + | chr5.4:77181697-77181716 | MS.gene020923:CDS | 35.0% | |
| CTTTCTTACATGTGAAGTCA+GGG | - | chr5.4:77180716-77180735 | None:intergenic | 35.0% | |
| TCTTTCTTACATGTGAAGTC+AGG | - | chr5.4:77180717-77180736 | None:intergenic | 35.0% | |
| TGAATTACTTGATTGACTGC+TGG | - | chr5.4:77181395-77181414 | None:intergenic | 35.0% | |
| TGGACTTGTACTTGATTCAT+TGG | + | chr5.4:77181183-77181202 | MS.gene020923:CDS | 35.0% | |
| TTGAAAGAGGCAATTGAACT+TGG | + | chr5.4:77180831-77180850 | MS.gene020923:CDS | 35.0% | |
| TTTCTTACATGTGAAGTCAG+GGG | - | chr5.4:77180715-77180734 | None:intergenic | 35.0% | |
| ! | ATTTTCAGTGACCCAAAGTT+TGG | - | chr5.4:77180889-77180908 | None:intergenic | 35.0% |
| ! | GTGTCTATAACCTTGTTTGA+TGG | - | chr5.4:77180763-77180782 | None:intergenic | 35.0% |
| ! | TAACTGCATTTTCACCATTG+AGG | + | chr5.4:77181581-77181600 | MS.gene020923:CDS | 35.0% |
| !! | ATTTGATGTGAAGGGTGTTT+GGG | + | chr5.4:77181265-77181284 | MS.gene020923:CDS | 35.0% |
| !! | TTGAGAGATTTTTGAAGAGC+AGG | - | chr5.4:77180930-77180949 | None:intergenic | 35.0% |
| AAAGAGATTGCAGATGCTCA+TGG | + | chr5.4:77181652-77181671 | MS.gene020923:CDS | 40.0% | |
| AAAGCTGTTCTCTAGTGACA+AGG | - | chr5.4:77180857-77180876 | None:intergenic | 40.0% | |
| AAGAGATCTGCCACATCAAT+TGG | - | chr5.4:77181242-77181261 | None:intergenic | 40.0% | |
| AAGCAAAATCGTTTGATCCC+TGG | + | chr5.4:77181826-77181845 | MS.gene020923:CDS | 40.0% | |
| AAGTTTCAAGCTTTCCTCCA+TGG | - | chr5.4:77181294-77181313 | None:intergenic | 40.0% | |
| AGAGCAGGAATAACAAGATG+AGG | - | chr5.4:77180915-77180934 | None:intergenic | 40.0% | |
| ATCATAGAGGTCATTGAGTC+CGG | - | chr5.4:77181863-77181882 | None:intergenic | 40.0% | |
| ATGGAGGAAAGCTTGAAACT+TGG | + | chr5.4:77181293-77181312 | MS.gene020923:CDS | 40.0% | |
| CAAACACCCTTCACATCAAA+TGG | - | chr5.4:77181266-77181285 | None:intergenic | 40.0% | |
| CTCTCCTTATCATAGCTCTT+GGG | - | chr5.4:77181736-77181755 | None:intergenic | 40.0% | |
| CTTGGACTGACTAAAGCTAT+TGG | + | chr5.4:77181311-77181330 | MS.gene020923:CDS | 40.0% | |
| TATGGTTCAGAACAAGCTCT+TGG | + | chr5.4:77180801-77180820 | MS.gene020923:CDS | 40.0% | |
| TCTCTCCTTATCATAGCTCT+TGG | - | chr5.4:77181737-77181756 | None:intergenic | 40.0% | |
| TGTTCCCAAGAGCTATGATA+AGG | + | chr5.4:77181729-77181748 | MS.gene020923:CDS | 40.0% | |
| TTCGTGCAGAACTCTTCAAT+TGG | + | chr5.4:77181154-77181173 | MS.gene020923:intron | 40.0% | |
| TTTGATACTGCTGCTGCATA+TGG | + | chr5.4:77180783-77180802 | MS.gene020923:CDS | 40.0% | |
| ! | CTCTTGCCATTTGATGTGAA+GGG | + | chr5.4:77181257-77181276 | MS.gene020923:CDS | 40.0% |
| ! | GCATTTTCACCATTGAGGAA+AGG | + | chr5.4:77181586-77181605 | MS.gene020923:CDS | 40.0% |
| ! | TCTCTTGCCATTTGATGTGA+AGG | + | chr5.4:77181256-77181275 | MS.gene020923:CDS | 40.0% |
| ! | TTTCCAGGTTGAGAACTAAG+TGG | - | chr5.4:77181209-77181228 | None:intergenic | 40.0% |
| !! | CATTTGATGTGAAGGGTGTT+TGG | + | chr5.4:77181264-77181283 | MS.gene020923:CDS | 40.0% |
| ATTGACTGCTGGAAGAACAG+TGG | - | chr5.4:77181384-77181403 | None:intergenic | 45.0% | |
| CAGGGGACCAAATGAAGTTA+TGG | + | chr5.4:77181615-77181634 | MS.gene020923:CDS | 45.0% | |
| TCATAGAGGTCATTGAGTCC+GGG | - | chr5.4:77181862-77181881 | None:intergenic | 45.0% | |
| TTCAGAACAAGCTCTTGGAG+AGG | + | chr5.4:77180806-77180825 | MS.gene020923:CDS | 45.0% | |
| ! | AGAGAGTTTTGCAACGCACA+CGG | + | chr5.4:77181550-77181569 | MS.gene020923:CDS | 45.0% |
| ! | ATTGAGGAAAGGTGCAAGCA+GGG | + | chr5.4:77181597-77181616 | MS.gene020923:CDS | 45.0% |
| ! | GCTTCTTTTGTTGCCATGCA+AGG | - | chr5.4:77181528-77181547 | None:intergenic | 45.0% |
| !! | TCTTGGAGAGGCTTTGAAAG+AGG | + | chr5.4:77180818-77180837 | MS.gene020923:CDS | 45.0% |
| AGGTGGAGATGAACCTTGCA+TGG | + | chr5.4:77181512-77181531 | MS.gene020923:intron | 50.0% | |
| CTGCTTGCACCTTTCCTCAA+TGG | - | chr5.4:77181598-77181617 | None:intergenic | 50.0% | |
| ! | CATTGAGGAAAGGTGCAAGC+AGG | + | chr5.4:77181596-77181615 | MS.gene020923:CDS | 50.0% |
| ! | TGGCCACTTAGTTCTCAACC+TGG | + | chr5.4:77181203-77181222 | MS.gene020923:CDS | 50.0% |
| ! | TTGAGGAAAGGTGCAAGCAG+GGG | + | chr5.4:77181598-77181617 | MS.gene020923:CDS | 50.0% |
| !! | GAAGGGTGTTTGGGAATCCA+TGG | + | chr5.4:77181274-77181293 | MS.gene020923:CDS | 50.0% |
| GCTGATCCCATTCCAACCAC+AGG | - | chr5.4:77180693-77180712 | None:intergenic | 55.0% | |
| GGGTGTTTGGGAATCCATGG+AGG | + | chr5.4:77181277-77181296 | MS.gene020923:CDS | 55.0% | |
| ! | TCATTGAGTCCGGGCTTGGT+TGG | - | chr5.4:77181853-77181872 | None:intergenic | 55.0% |
| ATCCCTGGACCAACCAAGCC+CGG | + | chr5.4:77181841-77181860 | MS.gene020923:CDS | 60.0% | |
| GAGGTCATTGAGTCCGGGCT+TGG | - | chr5.4:77181857-77181876 | None:intergenic | 60.0% | |
| ! | AGTCCGGGCTTGGTTGGTCC+AGG | - | chr5.4:77181847-77181866 | None:intergenic | 65.0% |
| ! | GTCCGGGCTTGGTTGGTCCA+GGG | - | chr5.4:77181846-77181865 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 77180687 | 77181888 | 77180687 | ID=MS.gene020923 |
| chr5.4 | mRNA | 77180687 | 77181888 | 77180687 | ID=MS.gene020923.t1;Parent=MS.gene020923 |
| chr5.4 | exon | 77180687 | 77180949 | 77180687 | ID=MS.gene020923.t1.exon1;Parent=MS.gene020923.t1 |
| chr5.4 | CDS | 77180687 | 77180949 | 77180687 | ID=cds.MS.gene020923.t1;Parent=MS.gene020923.t1 |
| chr5.4 | exon | 77181163 | 77181406 | 77181163 | ID=MS.gene020923.t1.exon2;Parent=MS.gene020923.t1 |
| chr5.4 | CDS | 77181163 | 77181406 | 77181163 | ID=cds.MS.gene020923.t1;Parent=MS.gene020923.t1 |
| chr5.4 | exon | 77181514 | 77181888 | 77181514 | ID=MS.gene020923.t1.exon3;Parent=MS.gene020923.t1 |
| chr5.4 | CDS | 77181514 | 77181888 | 77181514 | ID=cds.MS.gene020923.t1;Parent=MS.gene020923.t1 |
| Gene Sequence |
| Protein sequence |
