Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021441.t1 | XP_024630955.1 | 96.8 | 709 | 23 | 0 | 1 | 709 | 1 | 709 | 0.00E+00 | 1346.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021441.t1 | Q9XSC3 | 30.7 | 417 | 269 | 9 | 209 | 616 | 459 | 864 | 2.5e-42 | 175.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021441.t1 | A0A396JHT0 | 96.8 | 709 | 23 | 0 | 1 | 709 | 1 | 709 | 0.0e+00 | 1346.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40671 | MS.gene021441 | PPI |
| MS.gene070492 | MS.gene021441 | PPI |
| MS.gene003811 | MS.gene021441 | PPI |
| MS.gene81615 | MS.gene021441 | PPI |
| MS.gene81622 | MS.gene021441 | PPI |
| MS.gene016743 | MS.gene021441 | PPI |
| MS.gene45734 | MS.gene021441 | PPI |
| MS.gene057884 | MS.gene021441 | PPI |
| MS.gene057883 | MS.gene021441 | PPI |
| MS.gene016742 | MS.gene021441 | PPI |
| MS.gene070510 | MS.gene021441 | PPI |
| MS.gene016758 | MS.gene021441 | PPI |
| MS.gene67840 | MS.gene021441 | PPI |
| MS.gene021441 | MS.gene070511 | PPI |
| MS.gene81617 | MS.gene021441 | PPI |
| MS.gene37911 | MS.gene021441 | PPI |
| MS.gene070509 | MS.gene021441 | PPI |
| MS.gene81620 | MS.gene021441 | PPI |
| MS.gene070505 | MS.gene021441 | PPI |
| MS.gene057886 | MS.gene021441 | PPI |
| MS.gene021441 | MS.gene056653 | PPI |
| MS.gene070503 | MS.gene021441 | PPI |
| MS.gene070507 | MS.gene021441 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021441.t1 | MTR_1g007740 | 96.605 | 707 | 24 | 0 | 1 | 707 | 1 | 707 | 0.0 | 1412 |
| MS.gene021441.t1 | MTR_3g491920 | 62.534 | 726 | 227 | 14 | 1 | 707 | 1 | 700 | 0.0 | 857 |
| MS.gene021441.t1 | MTR_8g100005 | 45.254 | 727 | 350 | 12 | 8 | 707 | 7 | 712 | 0.0 | 581 |
| MS.gene021441.t1 | MTR_8g092890 | 36.176 | 680 | 333 | 16 | 50 | 709 | 47 | 645 | 4.81e-124 | 384 |
| MS.gene021441.t1 | MTR_2g079740 | 41.493 | 576 | 260 | 17 | 196 | 709 | 298 | 858 | 1.12e-122 | 387 |
| MS.gene021441.t1 | MTR_8g100005 | 44.016 | 493 | 234 | 10 | 8 | 474 | 7 | 483 | 5.32e-122 | 374 |
| MS.gene021441.t1 | MTR_3g095780 | 44.742 | 485 | 236 | 11 | 233 | 709 | 168 | 628 | 4.45e-120 | 373 |
| MS.gene021441.t1 | MTR_7g060420 | 46.917 | 373 | 187 | 6 | 234 | 595 | 392 | 764 | 2.87e-91 | 307 |
| MS.gene021441.t1 | MTR_1g072140 | 27.119 | 236 | 152 | 8 | 338 | 566 | 48 | 270 | 2.78e-17 | 84.0 |
| MS.gene021441.t1 | MTR_4g119620 | 26.482 | 253 | 152 | 9 | 251 | 487 | 19 | 253 | 3.82e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021441.t1 | AT5G24320 | 48.767 | 730 | 293 | 20 | 10 | 707 | 12 | 692 | 0.0 | 611 |
| MS.gene021441.t1 | AT5G24320 | 48.774 | 734 | 291 | 21 | 10 | 707 | 12 | 696 | 0.0 | 610 |
| MS.gene021441.t1 | AT5G53500 | 48.801 | 709 | 293 | 17 | 6 | 707 | 7 | 652 | 0.0 | 596 |
| MS.gene021441.t1 | AT5G53500 | 48.801 | 709 | 293 | 17 | 6 | 707 | 7 | 652 | 0.0 | 596 |
| MS.gene021441.t1 | AT5G42010 | 49.074 | 540 | 236 | 14 | 186 | 707 | 189 | 707 | 7.17e-162 | 484 |
| MS.gene021441.t1 | AT1G64610 | 48.381 | 525 | 224 | 12 | 191 | 707 | 160 | 645 | 5.62e-158 | 471 |
| MS.gene021441.t1 | AT1G64610 | 48.381 | 525 | 224 | 12 | 191 | 707 | 160 | 645 | 5.62e-158 | 471 |
| MS.gene021441.t1 | AT5G42010 | 52.589 | 367 | 165 | 5 | 186 | 548 | 189 | 550 | 1.95e-127 | 390 |
| MS.gene021441.t1 | AT5G54200 | 44.467 | 497 | 250 | 11 | 232 | 709 | 336 | 825 | 2.26e-124 | 390 |
| MS.gene021441.t1 | AT3G15470 | 40.497 | 563 | 277 | 11 | 194 | 709 | 332 | 883 | 6.86e-120 | 380 |
| MS.gene021441.t1 | AT1G48870 | 39.666 | 479 | 228 | 12 | 231 | 706 | 170 | 590 | 1.85e-98 | 315 |
| MS.gene021441.t1 | AT1G48870 | 39.666 | 479 | 228 | 12 | 231 | 706 | 170 | 590 | 1.85e-98 | 315 |
| MS.gene021441.t1 | AT1G48870 | 39.666 | 479 | 228 | 12 | 231 | 706 | 170 | 590 | 1.85e-98 | 315 |
| MS.gene021441.t1 | AT5G02430 | 39.768 | 518 | 263 | 11 | 232 | 706 | 384 | 895 | 1.82e-96 | 318 |
| MS.gene021441.t1 | AT2G37670 | 39.539 | 521 | 261 | 12 | 234 | 706 | 380 | 894 | 8.40e-93 | 308 |
| MS.gene021441.t1 | AT2G37670 | 39.539 | 521 | 261 | 12 | 234 | 706 | 379 | 893 | 9.43e-93 | 308 |
| MS.gene021441.t1 | AT3G49660 | 24.224 | 322 | 171 | 11 | 253 | 567 | 18 | 273 | 1.38e-18 | 87.8 |
| MS.gene021441.t1 | AT2G16405 | 22.881 | 236 | 166 | 4 | 348 | 567 | 199 | 434 | 5.13e-12 | 69.3 |
Find 151 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTGACACCCTTGTTTA+TGG | 0.143018 | 1.4:-11687967 | MS.gene021441:CDS |
| CTTATACAGGTAGGGATTAT+TGG | 0.170811 | 1.4:-11687219 | MS.gene021441:intron |
| GAGGGTTTGCTGAGAGATTT+TGG | 0.182081 | 1.4:-11688791 | MS.gene021441:CDS |
| TCCATGAATTCTTCAGAATT+TGG | 0.194639 | 1.4:-11688536 | MS.gene021441:CDS |
| AAGAGGAATAACCGGCTTTC+AGG | 0.207009 | 1.4:-11686805 | MS.gene021441:intron |
| TACATCCTGTATTTACTTTA+CGG | 0.216260 | 1.4:-11688003 | MS.gene021441:CDS |
| TGGTCATGGAGGTGAAATTT+TGG | 0.235145 | 1.4:-11687832 | MS.gene021441:CDS |
| CTTGAGGTGACCTCTTATTT+AGG | 0.243028 | 1.4:+11686224 | None:intergenic |
| TTCTTTGTTTCTTGCATTGA+CGG | 0.263293 | 1.4:+11688204 | None:intergenic |
| GGAACTTTCAGCTCTTTATA+TGG | 0.266044 | 1.4:-11688180 | MS.gene021441:CDS |
| AAAGTGGATGGAATTGAGTT+TGG | 0.304155 | 1.4:-11688711 | MS.gene021441:CDS |
| GTGTTTCATTCTCTGGTTGT+AGG | 0.305208 | 1.4:-11688244 | MS.gene021441:CDS |
| TTCTTCAGAATTTGGTGCTT+TGG | 0.317391 | 1.4:-11688528 | MS.gene021441:CDS |
| TCCTAAGGTCTTCCGTTTGA+TGG | 0.319986 | 1.4:-11687877 | MS.gene021441:CDS |
| ATACAGGATGTATCAACTTC+TGG | 0.321898 | 1.4:+11688014 | None:intergenic |
| CGCATCTGTTGCAGTACCTT+GGG | 0.326050 | 1.4:-11686293 | MS.gene021441:CDS |
| GGATAAGTTGCGGAACCTTT+CGG | 0.326663 | 1.4:+11686139 | None:intergenic |
| TTGATAAAACTGTTCGTCTA+TGG | 0.334885 | 1.4:-11687641 | MS.gene021441:CDS |
| TTTGGATCAGTCAGTGGTTT+CGG | 0.338155 | 1.4:-11688459 | MS.gene021441:CDS |
| CTGATTGTCATGTTGTTGAT+TGG | 0.342478 | 1.4:-11687366 | MS.gene021441:CDS |
| CAATCACAACTATGCTTACT+TGG | 0.344066 | 1.4:-11686846 | MS.gene021441:CDS |
| GACAACCCTGAAGTTGATTC+TGG | 0.347739 | 1.4:-11688827 | MS.gene021441:CDS |
| TGGTGCTTTGGTGGAGAATT+CGG | 0.352335 | 1.4:-11688516 | MS.gene021441:CDS |
| ATAAAATCATTCCACAATTA+CGG | 0.355391 | 1.4:-11685968 | MS.gene021441:CDS |
| ACCAAATTCTGAAGAATTCA+TGG | 0.356917 | 1.4:+11688535 | None:intergenic |
| ACCAGTTACCAGCATGAGTT+TGG | 0.360497 | 1.4:-11688404 | MS.gene021441:CDS |
| TTCATTAGCGGATCAATAGA+TGG | 0.362082 | 1.4:-11687412 | MS.gene021441:CDS |
| GACACCCTTGTTTATGGATA+AGG | 0.363962 | 1.4:-11687961 | MS.gene021441:CDS |
| AGTTGATTCTGGTCCTCCTT+TGG | 0.373369 | 1.4:-11688816 | MS.gene021441:CDS |
| GGAGGACCAGAATCAACTTC+AGG | 0.378263 | 1.4:+11688821 | None:intergenic |
| AACCTTGAGAATTCGGTAGA+TGG | 0.380774 | 1.4:-11688680 | MS.gene021441:CDS |
| TAGATGGAAAAGTGCGCATA+TGG | 0.387508 | 1.4:-11687396 | MS.gene021441:CDS |
| TGATGGAGTGGAAGTAGGTT+TGG | 0.393251 | 1.4:-11688477 | MS.gene021441:CDS |
| ACCAAACTCATGCTGGTAAC+TGG | 0.395389 | 1.4:+11688403 | None:intergenic |
| GAACTTTCAGCTCTTTATAT+GGG | 0.405806 | 1.4:-11688179 | MS.gene021441:CDS |
| CTTGCTAGTGCCGGCGAAGA+TGG | 0.410754 | 1.4:-11688092 | MS.gene021441:CDS |
| GAAGACGGTGTTTCATTCTC+TGG | 0.423222 | 1.4:-11688251 | MS.gene021441:CDS |
| TTCTGGTCCTCCTTTGGTGG+AGG | 0.423302 | 1.4:-11688810 | MS.gene021441:CDS |
| TGAATTGTGGACCAGGAGTC+CGG | 0.426510 | 1.4:-11688765 | MS.gene021441:CDS |
| CGCCGGCACTAGCAAGATAC+TGG | 0.427472 | 1.4:+11688099 | None:intergenic |
| TGATTCTGGTCCTCCTTTGG+TGG | 0.429534 | 1.4:-11688813 | MS.gene021441:CDS |
| TTCAGAATTTGGTGCTTTGG+TGG | 0.430345 | 1.4:-11688525 | MS.gene021441:CDS |
| TCTTCTGGAAGAGGAATAAC+CGG | 0.432558 | 1.4:-11686813 | MS.gene021441:CDS |
| TCTGGTCCTCCTTTGGTGGA+GGG | 0.438960 | 1.4:-11688809 | MS.gene021441:CDS |
| AAACCACTTCATGAGTTTCA+TGG | 0.440737 | 1.4:-11687852 | MS.gene021441:CDS |
| AACAAGGAGAATCTGATAAC+AGG | 0.441398 | 1.4:-11688280 | MS.gene021441:CDS |
| TCCATCAAACGGAAGACCTT+AGG | 0.442471 | 1.4:+11687876 | None:intergenic |
| AGGAATGATGGAGTGGAAGT+AGG | 0.444491 | 1.4:-11688482 | MS.gene021441:CDS |
| AGAAATTATACCTGTCCATC+AGG | 0.448537 | 1.4:+11687304 | None:intergenic |
| TAGACCCCATGCATGACAAT+TGG | 0.455729 | 1.4:+11686021 | None:intergenic |
| TTGTAGGATTCAGCGAGTTA+AGG | 0.455745 | 1.4:-11688228 | MS.gene021441:CDS |
| AGTAATCGTGACTGCTGGTT+GGG | 0.456343 | 1.4:-11685999 | MS.gene021441:CDS |
| GTGCTATCGGCCTGATGGAC+AGG | 0.464270 | 1.4:-11687314 | MS.gene021441:intron |
| AGAATTCGGCATGCGAAGAT+AGG | 0.469347 | 1.4:-11688502 | MS.gene021441:CDS |
| GGTGAGGAGTTCGAGGGGAC+AGG | 0.481217 | 1.4:-11688383 | MS.gene021441:CDS |
| ATTCACCGTAAAGTAAATAC+AGG | 0.481895 | 1.4:+11687998 | None:intergenic |
| GGGATTATTGGCTCCATGAC+AGG | 0.482718 | 1.4:-11687207 | MS.gene021441:CDS |
| CTTTACGGTGAATGATCTCT+CGG | 0.483120 | 1.4:-11687988 | MS.gene021441:CDS |
| TACTTCCAATTGTCATGCAT+GGG | 0.483434 | 1.4:-11686026 | MS.gene021441:CDS |
| CTTCATGAGTTTCATGGTCA+TGG | 0.484621 | 1.4:-11687846 | MS.gene021441:CDS |
| CAATCAACAACATGACAATC+AGG | 0.489078 | 1.4:+11687367 | None:intergenic |
| ATAACTTTGTTAAAATCTTG+TGG | 0.491780 | 1.4:+11686667 | None:intergenic |
| CTTTCATTTCAAAGGAGTAC+AGG | 0.491830 | 1.4:+11685941 | None:intergenic |
| GATGATGATTATTTCATTAG+CGG | 0.495396 | 1.4:-11687424 | MS.gene021441:CDS |
| ACGCATCTGTTGCAGTACCT+TGG | 0.499424 | 1.4:-11686294 | MS.gene021441:CDS |
| GCTCCATGACAGGCAATTGT+CGG | 0.502618 | 1.4:-11687197 | MS.gene021441:CDS |
| GCAGTATTTGCTGTCATCGT+CGG | 0.510836 | 1.4:-11687664 | MS.gene021441:intron |
| GAAGTAGGAAGTTTCTCCTC+GGG | 0.512166 | 1.4:+11686118 | None:intergenic |
| ATCGTGACTGCTGGTTGGGA+TGG | 0.512730 | 1.4:-11685995 | MS.gene021441:CDS |
| GAGGACCAGAATCAACTTCA+GGG | 0.513061 | 1.4:+11688822 | None:intergenic |
| TTGTCACCGCAGTGTGCTAT+CGG | 0.513075 | 1.4:-11687327 | MS.gene021441:CDS |
| CTAGCAAGATACTGGCCGTC+CGG | 0.518249 | 1.4:+11688107 | None:intergenic |
| AATTGGATGTCCTAAATAAG+AGG | 0.531200 | 1.4:-11686234 | MS.gene021441:CDS |
| TGAGTTTGGTGAGGAGTTCG+AGG | 0.532574 | 1.4:-11688390 | MS.gene021441:CDS |
| GAATTGTGGACCAGGAGTCC+GGG | 0.534742 | 1.4:-11688764 | MS.gene021441:CDS |
| GAGATTAATAGAATGAAAGA+TGG | 0.537127 | 1.4:-11688635 | MS.gene021441:CDS |
| TAGTAATCGTGACTGCTGGT+TGG | 0.539202 | 1.4:-11686000 | MS.gene021441:CDS |
| GCATGCGAAGATAGGAATGA+TGG | 0.541227 | 1.4:-11688494 | MS.gene021441:CDS |
| ATGAAATAATCATCATCCAC+AGG | 0.541795 | 1.4:+11687430 | None:intergenic |
| TCTAACACTACCCGGACTCC+TGG | 0.545596 | 1.4:+11688754 | None:intergenic |
| TTCCATCTACCGAATTCTCA+AGG | 0.548317 | 1.4:+11688678 | None:intergenic |
| TCACAAGTCAGAATCATTGA+AGG | 0.548563 | 1.4:-11686628 | MS.gene021441:CDS |
| GGCCAGTATCTTGCTAGTGC+CGG | 0.549193 | 1.4:-11688101 | MS.gene021441:CDS |
| GAAGTGGTTTCTCCATCAAA+CGG | 0.549389 | 1.4:+11687865 | None:intergenic |
| GAGTAAGTTTATAAAGTGGA+TGG | 0.549532 | 1.4:-11688723 | MS.gene021441:CDS |
| GCAGTGTGCTATCGGCCTGA+TGG | 0.550180 | 1.4:-11687319 | MS.gene021441:CDS |
| GTAGGAGTAAGTTTATAAAG+TGG | 0.551153 | 1.4:-11688727 | MS.gene021441:CDS |
| AAACCGACAATTGCCTGTCA+TGG | 0.552139 | 1.4:+11687194 | None:intergenic |
| GTACTTCCAATTGTCATGCA+TGG | 0.556893 | 1.4:-11686027 | MS.gene021441:CDS |
| TCGTGACTGCTGGTTGGGAT+GGG | 0.557894 | 1.4:-11685994 | MS.gene021441:CDS |
| TTACTCTTAGGGCTTGAAGT+AGG | 0.562824 | 1.4:+11686103 | None:intergenic |
| TGTGGAATGTTAGTGACGAC+GGG | 0.565541 | 1.4:-11686369 | MS.gene021441:CDS |
| AACTGTTCGTCTATGGCAAG+TGG | 0.567280 | 1.4:-11687634 | MS.gene021441:CDS |
| CTCAGCAAACCCTCCACCAA+AGG | 0.567962 | 1.4:+11688800 | None:intergenic |
| TTTATCCTTATCCATAAACA+AGG | 0.568961 | 1.4:+11687956 | None:intergenic |
| ACTCCTCACCAAACTCATGC+TGG | 0.572712 | 1.4:+11688396 | None:intergenic |
| TATTTGGATTCTATTCCGAA+AGG | 0.577615 | 1.4:-11686154 | MS.gene021441:CDS |
| CTGTGGAATGTTAGTGACGA+CGG | 0.578440 | 1.4:-11686370 | MS.gene021441:CDS |
| AAGATGGAATTGTGCGATTG+TGG | 0.579171 | 1.4:-11688076 | MS.gene021441:CDS |
| TTGGATATGAATTGTGGACC+AGG | 0.579478 | 1.4:-11688772 | MS.gene021441:CDS |
| TCAATGCAAGAAACAAAGAA+AGG | 0.579785 | 1.4:-11688201 | MS.gene021441:CDS |
| TGAAGTAGGAAGTTTCTCCT+CGG | 0.582779 | 1.4:+11686117 | None:intergenic |
| ATTAATAGAATGAAAGATGG+TGG | 0.583671 | 1.4:-11688632 | MS.gene021441:CDS |
| ATCAAACGGAAGACCTTAGG+AGG | 0.585403 | 1.4:+11687879 | None:intergenic |
| GTGTCAATCTCAGATGCAAA+TGG | 0.586470 | 1.4:-11688857 | MS.gene021441:CDS |
| ATATACATTTGAGTCTTCAC+AGG | 0.587540 | 1.4:+11686393 | None:intergenic |
| GAATAAGAAGCACAATGGCT+AGG | 0.588859 | 1.4:-11688925 | None:intergenic |
| AGATGGAAAAGTGCGCATAT+GGG | 0.590347 | 1.4:-11687395 | MS.gene021441:CDS |
| CTACGCTCTCTAACACTACC+CGG | 0.590841 | 1.4:+11688746 | None:intergenic |
| GCGATTGTGGCAAGTTGTTG+AGG | 0.591064 | 1.4:-11688063 | MS.gene021441:CDS |
| CACAAGTCAGAATCATTGAA+GGG | 0.591839 | 1.4:-11686627 | MS.gene021441:CDS |
| CGGGTAGTGTTAGAGAGCGT+AGG | 0.595315 | 1.4:-11688745 | MS.gene021441:CDS |
| TCTGTTGCAGTACCTTGGGG+TGG | 0.600067 | 1.4:-11686289 | MS.gene021441:CDS |
| GTTTGAGTCGTGGACAAAGA+GGG | 0.600126 | 1.4:-11688357 | MS.gene021441:CDS |
| TTTCTCCTCGGGATAAGTTG+CGG | 0.600952 | 1.4:+11686129 | None:intergenic |
| GGATCAAGGCATACAGCTTG+AGG | 0.601512 | 1.4:+11686208 | None:intergenic |
| TCTGACTTGTGAATCAGCAC+AGG | 0.603387 | 1.4:+11686639 | None:intergenic |
| TCGCACAATTCCATCTTCGC+CGG | 0.604000 | 1.4:+11688082 | None:intergenic |
| GTACAGGTAATCCGTAATTG+TGG | 0.604825 | 1.4:+11685957 | None:intergenic |
| AGTAGGTTTGGATCAGTCAG+TGG | 0.606958 | 1.4:-11688465 | MS.gene021441:CDS |
| AGCAAACCCTCCACCAAAGG+AGG | 0.608011 | 1.4:+11688803 | None:intergenic |
| GGTCTAGTAATCGTGACTGC+TGG | 0.608692 | 1.4:-11686004 | MS.gene021441:CDS |
| TGACCATGAAACTCATGAAG+TGG | 0.609680 | 1.4:+11687849 | None:intergenic |
| GTTTGAAAAGAACCGCTCGC+AGG | 0.610721 | 1.4:+11686315 | None:intergenic |
| GAGTTTGGTGAGGAGTTCGA+GGG | 0.610769 | 1.4:-11688389 | MS.gene021441:CDS |
| GCGTTCAATGACATGCATGA+TGG | 0.613983 | 1.4:-11688309 | MS.gene021441:CDS |
| TGAATCTGTGAACGCTGCTG+AGG | 0.618609 | 1.4:-11688435 | MS.gene021441:CDS |
| ACTATGAAATTTAGTCCGGA+CGG | 0.619533 | 1.4:-11688122 | MS.gene021441:CDS |
| TGTTTGAGTCGTGGACAAAG+AGG | 0.619572 | 1.4:-11688358 | MS.gene021441:CDS |
| GATAACAGGAAGCACGAAGA+CGG | 0.624901 | 1.4:-11688266 | MS.gene021441:CDS |
| TTATCCTTATCCATAAACAA+GGG | 0.630847 | 1.4:+11687957 | None:intergenic |
| CGAAGATAGGAATGATGGAG+TGG | 0.631147 | 1.4:-11688489 | MS.gene021441:CDS |
| TCCATCCGAAGTAAAAGATG+CGG | 0.632163 | 1.4:+11686432 | None:intergenic |
| AAGACTCAAATGTATATCTG+TGG | 0.633398 | 1.4:-11686387 | MS.gene021441:CDS |
| GGACAGGTATGTTTGAGTCG+TGG | 0.645058 | 1.4:-11688367 | MS.gene021441:CDS |
| GGCAAGTTGTTGAGGATGAG+AGG | 0.647793 | 1.4:-11688055 | MS.gene021441:CDS |
| TCAGATTTCAAACCACCCCA+AGG | 0.650854 | 1.4:+11686277 | None:intergenic |
| ATGCATACAATTCAATCCTG+TGG | 0.653407 | 1.4:-11687446 | MS.gene021441:CDS |
| ACTGTTCGTCTATGGCAAGT+GGG | 0.654097 | 1.4:-11687633 | MS.gene021441:CDS |
| GCATCTGTTGCAGTACCTTG+GGG | 0.656255 | 1.4:-11686292 | MS.gene021441:CDS |
| TTACCAGCATGAGTTTGGTG+AGG | 0.658249 | 1.4:-11688399 | MS.gene021441:CDS |
| TGTTGATTGGACTGACGTCA+AGG | 0.671513 | 1.4:-11687353 | MS.gene021441:CDS |
| CATGAGTTTCATGGTCATGG+AGG | 0.673674 | 1.4:-11687843 | MS.gene021441:CDS |
| AGTAGTGTGAGCAAAAGTCA+TGG | 0.676316 | 1.4:-11688608 | MS.gene021441:CDS |
| AGGTTCCGCAACTTATCCCG+AGG | 0.678766 | 1.4:-11686134 | MS.gene021441:CDS |
| ACTTCCAATTGTCATGCATG+GGG | 0.679789 | 1.4:-11686025 | MS.gene021441:CDS |
| CAAGATATTCAAGCGCACGA+AGG | 0.706142 | 1.4:-11688155 | MS.gene021441:CDS |
| AGTTTGGTGAGGAGTTCGAG+GGG | 0.707819 | 1.4:-11688388 | MS.gene021441:CDS |
| TGCATGATGGATGTACAACA+AGG | 0.718046 | 1.4:-11688296 | MS.gene021441:CDS |
| AGAAGATTAAGTCCTGCGAG+CGG | 0.742727 | 1.4:-11686327 | MS.gene021441:CDS |
| ATCAGGCCGATAGCACACTG+CGG | 0.805171 | 1.4:+11687321 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATCAATTAATTAACTA+CGG | + | chr1.4:11688157-11688176 | None:intergenic | 10.0% |
| !! | CTAAATTTCATAGTAAAAAT+TGG | + | chr1.4:11686732-11686751 | None:intergenic | 15.0% |
| !! | TTCAAAATTCTATGAAAAAT+TGG | - | chr1.4:11687138-11687157 | MS.gene021441:intron | 15.0% |
| !!! | CATTGAAAATTCTAAAAAAT+TGG | - | chr1.4:11688609-11688628 | MS.gene021441:CDS | 15.0% |
| !! | AAAAGTCAAATTAGATAGAT+AGG | + | chr1.4:11688337-11688356 | None:intergenic | 20.0% |
| !! | ATAAAATCATTCCACAATTA+CGG | - | chr1.4:11688892-11688911 | MS.gene021441:CDS | 20.0% |
| !! | ATAACTTTGTTAAAATCTTG+TGG | + | chr1.4:11688196-11688215 | None:intergenic | 20.0% |
| !! | TAATTTCTTTACATTTCCTT+CGG | - | chr1.4:11687571-11687590 | MS.gene021441:intron | 20.0% |
| !! | TAGAATCCAAATAAAAATCT+TGG | + | chr1.4:11688699-11688718 | None:intergenic | 20.0% |
| !! | TGAAAAATTGGAAATTGATT+TGG | - | chr1.4:11687150-11687169 | MS.gene021441:intron | 20.0% |
| !!! | AAATTTGTTTTGTGAAAAGA+GGG | - | chr1.4:11687932-11687951 | MS.gene021441:CDS | 20.0% |
| !!! | ACAAGATTTTAACAAAGTTA+TGG | - | chr1.4:11688195-11688214 | MS.gene021441:CDS | 20.0% |
| !!! | CAATTTTCTCAAACTATTAT+CGG | - | chr1.4:11687835-11687854 | MS.gene021441:CDS | 20.0% |
| !!! | TTTTACTATGAAATTTAGTC+CGG | - | chr1.4:11686734-11686753 | MS.gene021441:intron | 20.0% |
| ! | AAAAGACAACAGAACTTAAT+TGG | + | chr1.4:11688112-11688131 | None:intergenic | 25.0% |
| ! | AATACATAAGAAGAACAGAA+AGG | + | chr1.4:11687307-11687326 | None:intergenic | 25.0% |
| ! | AATGTCGTTGAAAAATTCAA+AGG | - | chr1.4:11688259-11688278 | MS.gene021441:CDS | 25.0% |
| ! | ATTAATAGAATGAAAGATGG+TGG | - | chr1.4:11686228-11686247 | MS.gene021441:CDS | 25.0% |
| ! | GAACTTAATTGGTGTAAAAA+AGG | + | chr1.4:11688101-11688120 | None:intergenic | 25.0% |
| ! | GAGATTAATAGAATGAAAGA+TGG | - | chr1.4:11686225-11686244 | MS.gene021441:CDS | 25.0% |
| ! | GATGATGATTATTTCATTAG+CGG | - | chr1.4:11687436-11687455 | MS.gene021441:CDS | 25.0% |
| ! | TACATCCTGTATTTACTTTA+CGG | - | chr1.4:11686857-11686876 | MS.gene021441:CDS | 25.0% |
| ! | TTATCCTTATCCATAAACAA+GGG | + | chr1.4:11686906-11686925 | None:intergenic | 25.0% |
| ! | TTTATCCTTATCCATAAACA+AGG | + | chr1.4:11686907-11686926 | None:intergenic | 25.0% |
| !! | TCTAAGCCAAGATTTTTATT+TGG | - | chr1.4:11688690-11688709 | MS.gene021441:CDS | 25.0% |
| !! | TGAATTTGTTTACCTTATAC+AGG | - | chr1.4:11687628-11687647 | MS.gene021441:CDS | 25.0% |
| !!! | AGTGAAGATTTTTTACTCTT+AGG | + | chr1.4:11688772-11688791 | None:intergenic | 25.0% |
| !!! | CAAATTTGTTTTGTGAAAAG+AGG | - | chr1.4:11687931-11687950 | MS.gene021441:CDS | 25.0% |
| !!! | CATTTCATGTTTTAAGTCTA+AGG | - | chr1.4:11688362-11688381 | MS.gene021441:CDS | 25.0% |
| !!! | GTGAAGATTTTTTACTCTTA+GGG | + | chr1.4:11688771-11688790 | None:intergenic | 25.0% |
| !!! | TTAGCTTTAACTTCTTGTTT+TGG | - | chr1.4:11687334-11687353 | MS.gene021441:CDS | 25.0% |
| AAAAAACAATACCTGAAAGC+CGG | + | chr1.4:11688069-11688088 | None:intergenic | 30.0% | |
| AAGACTCAAATGTATATCTG+TGG | - | chr1.4:11688473-11688492 | MS.gene021441:CDS | 30.0% | |
| AATTGGATGTCCTAAATAAG+AGG | - | chr1.4:11688626-11688645 | MS.gene021441:CDS | 30.0% | |
| AGGATTTCTATATTGTTGTC+AGG | - | chr1.4:11688382-11688401 | MS.gene021441:CDS | 30.0% | |
| ATATACATTTGAGTCTTCAC+AGG | + | chr1.4:11688470-11688489 | None:intergenic | 30.0% | |
| ATGAAATAATCATCATCCAC+AGG | + | chr1.4:11687433-11687452 | None:intergenic | 30.0% | |
| ATTCACCGTAAAGTAAATAC+AGG | + | chr1.4:11686865-11686884 | None:intergenic | 30.0% | |
| CTTGGTAAAAAGAAATCTTC+TGG | - | chr1.4:11688032-11688051 | MS.gene021441:CDS | 30.0% | |
| GAACCAAAACCTTATAAAGT+GGG | + | chr1.4:11688299-11688318 | None:intergenic | 30.0% | |
| GAACTTTCAGCTCTTTATAT+GGG | - | chr1.4:11686681-11686700 | MS.gene021441:intron | 30.0% | |
| GAGTAAGTTTATAAAGTGGA+TGG | - | chr1.4:11686137-11686156 | MS.gene021441:CDS | 30.0% | |
| GGAAGAAATGAAGATTCTAT+GGG | - | chr1.4:11687592-11687611 | MS.gene021441:CDS | 30.0% | |
| GGATTTCTATATTGTTGTCA+GGG | - | chr1.4:11688383-11688402 | MS.gene021441:CDS | 30.0% | |
| GTAGGAGTAAGTTTATAAAG+TGG | - | chr1.4:11686133-11686152 | MS.gene021441:CDS | 30.0% | |
| TATTTGGATTCTATTCCGAA+AGG | - | chr1.4:11688706-11688725 | MS.gene021441:CDS | 30.0% | |
| TCAATGCAAGAAACAAAGAA+AGG | - | chr1.4:11686659-11686678 | MS.gene021441:CDS | 30.0% | |
| TCAGAAAAACCTTGAGAATT+CGG | - | chr1.4:11686173-11686192 | MS.gene021441:CDS | 30.0% | |
| TCCATGAATTCTTCAGAATT+TGG | - | chr1.4:11686324-11686343 | MS.gene021441:CDS | 30.0% | |
| TGAACCAAAACCTTATAAAG+TGG | + | chr1.4:11688300-11688319 | None:intergenic | 30.0% | |
| TTGATAAAACTGTTCGTCTA+TGG | - | chr1.4:11687219-11687238 | MS.gene021441:intron | 30.0% | |
| TTGTTTACCTTATACAGGTA+GGG | - | chr1.4:11687633-11687652 | MS.gene021441:CDS | 30.0% | |
| TTTGTTTACCTTATACAGGT+AGG | - | chr1.4:11687632-11687651 | MS.gene021441:CDS | 30.0% | |
| ! | AAAAAGAAATCTTCTGGAAG+AGG | - | chr1.4:11688038-11688057 | MS.gene021441:CDS | 30.0% |
| ! | AAAGAGGGATAATAACTTGT+TGG | - | chr1.4:11687947-11687966 | MS.gene021441:CDS | 30.0% |
| ! | ACCAAATTCTGAAGAATTCA+TGG | + | chr1.4:11686328-11686347 | None:intergenic | 30.0% |
| ! | GAGATTTTGGATATGAATTG+TGG | - | chr1.4:11686082-11686101 | MS.gene021441:CDS | 30.0% |
| ! | TTCTTTGTTTCTTGCATTGA+CGG | + | chr1.4:11686659-11686678 | None:intergenic | 30.0% |
| !! | AAGAGGGATAATAACTTGTT+GGG | - | chr1.4:11687948-11687967 | MS.gene021441:CDS | 30.0% |
| !! | CTTAATCTTCTTAGCTTTTG+TGG | + | chr1.4:11688524-11688543 | None:intergenic | 30.0% |
| !! | TGAATCTGATGTCTTTTTCA+GGG | + | chr1.4:11686946-11686965 | None:intergenic | 30.0% |
| AAACCACTTCATGAGTTTCA+TGG | - | chr1.4:11687008-11687027 | MS.gene021441:intron | 35.0% | |
| AAAGTGGATGGAATTGAGTT+TGG | - | chr1.4:11686149-11686168 | MS.gene021441:CDS | 35.0% | |
| AACAAGGAGAATCTGATAAC+AGG | - | chr1.4:11686580-11686599 | MS.gene021441:intron | 35.0% | |
| ACTATGAAATTTAGTCCGGA+CGG | - | chr1.4:11686738-11686757 | MS.gene021441:intron | 35.0% | |
| AGAAATTATACCTGTCCATC+AGG | + | chr1.4:11687559-11687578 | None:intergenic | 35.0% | |
| AGAATCTTCATTTCTTCCGA+AGG | + | chr1.4:11687590-11687609 | None:intergenic | 35.0% | |
| ATACAGGATGTATCAACTTC+TGG | + | chr1.4:11686849-11686868 | None:intergenic | 35.0% | |
| ATGCATACAATTCAATCCTG+TGG | - | chr1.4:11687414-11687433 | MS.gene021441:CDS | 35.0% | |
| CAAAGAGGGTTAAAAAGAGT+TGG | - | chr1.4:11686517-11686536 | MS.gene021441:intron | 35.0% | |
| CAATAATCCCTACCTGTATA+AGG | + | chr1.4:11687643-11687662 | None:intergenic | 35.0% | |
| CAATCAACAACATGACAATC+AGG | + | chr1.4:11687496-11687515 | None:intergenic | 35.0% | |
| CAATCACAACTATGCTTACT+TGG | - | chr1.4:11688014-11688033 | MS.gene021441:CDS | 35.0% | |
| CACAAGTCAGAATCATTGAA+GGG | - | chr1.4:11688233-11688252 | MS.gene021441:CDS | 35.0% | |
| CGGAAGAAATGAAGATTCTA+TGG | - | chr1.4:11687591-11687610 | MS.gene021441:intron | 35.0% | |
| CTGATTGTCATGTTGTTGAT+TGG | - | chr1.4:11687494-11687513 | MS.gene021441:intron | 35.0% | |
| CTTAGAGAAAAAGAAGATGG+TGG | + | chr1.4:11688676-11688695 | None:intergenic | 35.0% | |
| CTTATACAGGTAGGGATTAT+TGG | - | chr1.4:11687641-11687660 | MS.gene021441:CDS | 35.0% | |
| GAAAAAGATGCTTCGATCTT+TGG | + | chr1.4:11688135-11688154 | None:intergenic | 35.0% | |
| GGAACTTTCAGCTCTTTATA+TGG | - | chr1.4:11686680-11686699 | MS.gene021441:intron | 35.0% | |
| TACTTCCAATTGTCATGCAT+GGG | - | chr1.4:11688834-11688853 | MS.gene021441:CDS | 35.0% | |
| TCACAAGTCAGAATCATTGA+AGG | - | chr1.4:11688232-11688251 | MS.gene021441:CDS | 35.0% | |
| TGGCTTAGAGAAAAAGAAGA+TGG | + | chr1.4:11688679-11688698 | None:intergenic | 35.0% | |
| TTTATCTGCATATGTAGCAC+CGG | - | chr1.4:11687739-11687758 | MS.gene021441:intron | 35.0% | |
| ! | AATGTCCGCATCTTTTACTT+CGG | - | chr1.4:11688423-11688442 | MS.gene021441:CDS | 35.0% |
| ! | ATTTGAAGCACTTGCTAAAC+TGG | + | chr1.4:11687916-11687935 | None:intergenic | 35.0% |
| ! | CTGAATCTGATGTCTTTTTC+AGG | + | chr1.4:11686947-11686966 | None:intergenic | 35.0% |
| ! | GTGAAATTTTGGATCTCTCT+TGG | - | chr1.4:11687039-11687058 | MS.gene021441:intron | 35.0% |
| ! | GTTTTCTCACACAGTAACTA+TGG | - | chr1.4:11687269-11687288 | MS.gene021441:intron | 35.0% |
| ! | TTCATTAGCGGATCAATAGA+TGG | - | chr1.4:11687448-11687467 | MS.gene021441:CDS | 35.0% |
| !! | AAAAAGAAGATGGTGGATCA+AGG | + | chr1.4:11688669-11688688 | None:intergenic | 35.0% |
| !! | AACTATTATCGGTGTCAACA+TGG | - | chr1.4:11687846-11687865 | MS.gene021441:CDS | 35.0% |
| !! | GAGCAAAAGTCATGGTTTTA+TGG | - | chr1.4:11686260-11686279 | MS.gene021441:CDS | 35.0% |
| !! | TTCTTCAGAATTTGGTGCTT+TGG | - | chr1.4:11686332-11686351 | MS.gene021441:CDS | 35.0% |
| !! | TTGCATCATTTTTCCTCCTA+AGG | - | chr1.4:11686968-11686987 | MS.gene021441:intron | 35.0% |
| !!! | CAAAAGTCATGGTTTTATGG+AGG | - | chr1.4:11686263-11686282 | MS.gene021441:CDS | 35.0% |
| !!! | GTTGGGTTTGCTTTTGTTTT+TGG | - | chr1.4:11687965-11687984 | MS.gene021441:CDS | 35.0% |
| !!! | TGGAGGATTTCTTTTCAAGT+CGG | - | chr1.4:11686280-11686299 | MS.gene021441:CDS | 35.0% |
| !!! | TGTCGGTTTTACAATGTATC+AGG | - | chr1.4:11687680-11687699 | MS.gene021441:intron | 35.0% |
| AACCTTGAGAATTCGGTAGA+TGG | - | chr1.4:11686180-11686199 | MS.gene021441:CDS | 40.0% | |
| AAGATGGAATTGTGCGATTG+TGG | - | chr1.4:11686784-11686803 | MS.gene021441:intron | 40.0% | |
| ACGCATCCAATATGAAGTAC+CGG | + | chr1.4:11687761-11687780 | None:intergenic | 40.0% | |
| ACTTCCAATTGTCATGCATG+GGG | - | chr1.4:11688835-11688854 | MS.gene021441:CDS | 40.0% | |
| AGTAGTGTGAGCAAAAGTCA+TGG | - | chr1.4:11686252-11686271 | MS.gene021441:CDS | 40.0% | |
| CTTCATGAGTTTCATGGTCA+TGG | - | chr1.4:11687014-11687033 | MS.gene021441:intron | 40.0% | |
| CTTTACGGTGAATGATCTCT+CGG | - | chr1.4:11686872-11686891 | MS.gene021441:intron | 40.0% | |
| GAAGTGGTTTCTCCATCAAA+CGG | + | chr1.4:11686998-11687017 | None:intergenic | 40.0% | |
| GTACAGGTAATCCGTAATTG+TGG | + | chr1.4:11688906-11688925 | None:intergenic | 40.0% | |
| GTACTTCCAATTGTCATGCA+TGG | - | chr1.4:11688833-11688852 | MS.gene021441:CDS | 40.0% | |
| GTGTCAATCTCAGATGCAAA+TGG | - | chr1.4:11686003-11686022 | MS.gene021441:CDS | 40.0% | |
| GTGTTTCATTCTCTGGTTGT+AGG | - | chr1.4:11686616-11686635 | MS.gene021441:CDS | 40.0% | |
| TCCATCCGAAGTAAAAGATG+CGG | + | chr1.4:11688431-11688450 | None:intergenic | 40.0% | |
| TGAAGTAGGAAGTTTCTCCT+CGG | + | chr1.4:11688746-11688765 | None:intergenic | 40.0% | |
| TGACCATGAAACTCATGAAG+TGG | + | chr1.4:11687014-11687033 | None:intergenic | 40.0% | |
| TGTTTCGCTCCCACTTTATA+AGG | - | chr1.4:11688287-11688306 | MS.gene021441:CDS | 40.0% | |
| TTACTCTTAGGGCTTGAAGT+AGG | + | chr1.4:11688760-11688779 | None:intergenic | 40.0% | |
| TTCAACTTACGTATCGTGTC+TGG | - | chr1.4:11687873-11687892 | MS.gene021441:CDS | 40.0% | |
| TTCCATCTACCGAATTCTCA+AGG | + | chr1.4:11686185-11686204 | None:intergenic | 40.0% | |
| TTGAATGTTGCATGTCGTGT+CGG | + | chr1.4:11687810-11687829 | None:intergenic | 40.0% | |
| TTGGATATGAATTGTGGACC+AGG | - | chr1.4:11686088-11686107 | MS.gene021441:CDS | 40.0% | |
| TTGTAGGATTCAGCGAGTTA+AGG | - | chr1.4:11686632-11686651 | MS.gene021441:CDS | 40.0% | |
| TTTGGATCAGTCAGTGGTTT+CGG | - | chr1.4:11686401-11686420 | MS.gene021441:CDS | 40.0% | |
| ! | AGATGGAAAAGTGCGCATAT+GGG | - | chr1.4:11687465-11687484 | MS.gene021441:intron | 40.0% |
| ! | CTTGAGGTGACCTCTTATTT+AGG | + | chr1.4:11688639-11688658 | None:intergenic | 40.0% |
| ! | GACACCCTTGTTTATGGATA+AGG | - | chr1.4:11686899-11686918 | MS.gene021441:intron | 40.0% |
| ! | GCTCCCACTTTATAAGGTTT+TGG | - | chr1.4:11688293-11688312 | MS.gene021441:CDS | 40.0% |
| ! | GGAATTGACACCCTTGTTTA+TGG | - | chr1.4:11686893-11686912 | MS.gene021441:intron | 40.0% |
| ! | GGTGCTACATATGCAGATAA+AGG | + | chr1.4:11687740-11687759 | None:intergenic | 40.0% |
| ! | TAGATGGAAAAGTGCGCATA+TGG | - | chr1.4:11687464-11687483 | MS.gene021441:intron | 40.0% |
| ! | TCTTCTGGAAGAGGAATAAC+CGG | - | chr1.4:11688047-11688066 | MS.gene021441:CDS | 40.0% |
| ! | TGGTCATGGAGGTGAAATTT+TGG | - | chr1.4:11687028-11687047 | MS.gene021441:intron | 40.0% |
| !! | TGCATGATGGATGTACAACA+AGG | - | chr1.4:11686564-11686583 | MS.gene021441:intron | 40.0% |
| !! | TTCAGAATTTGGTGCTTTGG+TGG | - | chr1.4:11686335-11686354 | MS.gene021441:CDS | 40.0% |
| AAACCGACAATTGCCTGTCA+TGG | + | chr1.4:11687669-11687688 | None:intergenic | 45.0% | |
| AACTGTTCGTCTATGGCAAG+TGG | - | chr1.4:11687226-11687245 | MS.gene021441:intron | 45.0% | |
| ACCAAACTCATGCTGGTAAC+TGG | + | chr1.4:11686460-11686479 | None:intergenic | 45.0% | |
| ACCAGTTACCAGCATGAGTT+TGG | - | chr1.4:11686456-11686475 | MS.gene021441:CDS | 45.0% | |
| ACTGTTCGTCTATGGCAAGT+GGG | - | chr1.4:11687227-11687246 | MS.gene021441:intron | 45.0% | |
| AGAAGATTAAGTCCTGCGAG+CGG | - | chr1.4:11688533-11688552 | MS.gene021441:CDS | 45.0% | |
| AGAATTCGGCATGCGAAGAT+AGG | - | chr1.4:11686358-11686377 | MS.gene021441:CDS | 45.0% | |
| AGTAGGTTTGGATCAGTCAG+TGG | - | chr1.4:11686395-11686414 | MS.gene021441:CDS | 45.0% | |
| ATCAAACGGAAGACCTTAGG+AGG | + | chr1.4:11686984-11687003 | None:intergenic | 45.0% | |
| CAAGATATTCAAGCGCACGA+AGG | - | chr1.4:11686705-11686724 | MS.gene021441:intron | 45.0% | |
| CATGAGTTTCATGGTCATGG+AGG | - | chr1.4:11687017-11687036 | MS.gene021441:intron | 45.0% | |
| CTGTGGAATGTTAGTGACGA+CGG | - | chr1.4:11688490-11688509 | MS.gene021441:CDS | 45.0% | |
| GAAGACGGTGTTTCATTCTC+TGG | - | chr1.4:11686609-11686628 | MS.gene021441:CDS | 45.0% | |
| GAAGTAGGAAGTTTCTCCTC+GGG | + | chr1.4:11688745-11688764 | None:intergenic | 45.0% | |
| GAGGACCAGAATCAACTTCA+GGG | + | chr1.4:11686041-11686060 | None:intergenic | 45.0% | |
| GCATGCGAAGATAGGAATGA+TGG | - | chr1.4:11686366-11686385 | MS.gene021441:CDS | 45.0% | |
| GCGTTCAATGACATGCATGA+TGG | - | chr1.4:11686551-11686570 | MS.gene021441:intron | 45.0% | |
| GGATAAGTTGCGGAACCTTT+CGG | + | chr1.4:11688724-11688743 | None:intergenic | 45.0% | |
| GTTTGAGTCGTGGACAAAGA+GGG | - | chr1.4:11686503-11686522 | MS.gene021441:intron | 45.0% | |
| TAGACCCCATGCATGACAAT+TGG | + | chr1.4:11688842-11688861 | None:intergenic | 45.0% | |
| TAGTAATCGTGACTGCTGGT+TGG | - | chr1.4:11688860-11688879 | MS.gene021441:CDS | 45.0% | |
| TCAGATTTCAAACCACCCCA+AGG | + | chr1.4:11688586-11688605 | None:intergenic | 45.0% | |
| TCCATCAAACGGAAGACCTT+AGG | + | chr1.4:11686987-11687006 | None:intergenic | 45.0% | |
| TCCTAAGGTCTTCCGTTTGA+TGG | - | chr1.4:11686983-11687002 | MS.gene021441:intron | 45.0% | |
| TGATGGAGTGGAAGTAGGTT+TGG | - | chr1.4:11686383-11686402 | MS.gene021441:CDS | 45.0% | |
| TGGTGCTTTGGTGGAGAATT+CGG | - | chr1.4:11686344-11686363 | MS.gene021441:CDS | 45.0% | |
| TGTGGAATGTTAGTGACGAC+GGG | - | chr1.4:11688491-11688510 | MS.gene021441:CDS | 45.0% | |
| TGTTTGAGTCGTGGACAAAG+AGG | - | chr1.4:11686502-11686521 | MS.gene021441:intron | 45.0% | |
| TTTCTCCTCGGGATAAGTTG+CGG | + | chr1.4:11688734-11688753 | None:intergenic | 45.0% | |
| ! | AAGAGGAATAACCGGCTTTC+AGG | - | chr1.4:11688055-11688074 | MS.gene021441:CDS | 45.0% |
| ! | AGGAATGATGGAGTGGAAGT+AGG | - | chr1.4:11686378-11686397 | MS.gene021441:CDS | 45.0% |
| ! | AGTAATCGTGACTGCTGGTT+GGG | - | chr1.4:11688861-11688880 | MS.gene021441:CDS | 45.0% |
| ! | AGTTGATTCTGGTCCTCCTT+TGG | - | chr1.4:11686044-11686063 | MS.gene021441:CDS | 45.0% |
| ! | CGAAGATAGGAATGATGGAG+TGG | - | chr1.4:11686371-11686390 | MS.gene021441:CDS | 45.0% |
| ! | GACAACCCTGAAGTTGATTC+TGG | - | chr1.4:11686033-11686052 | MS.gene021441:CDS | 45.0% |
| ! | GATAACAGGAAGCACGAAGA+CGG | - | chr1.4:11686594-11686613 | MS.gene021441:intron | 45.0% |
| ! | TCCGCATCTTTTACTTCGGA+TGG | - | chr1.4:11688427-11688446 | MS.gene021441:CDS | 45.0% |
| ! | TCTGACTTGTGAATCAGCAC+AGG | + | chr1.4:11688224-11688243 | None:intergenic | 45.0% |
| ! | TGTTGATTGGACTGACGTCA+AGG | - | chr1.4:11687507-11687526 | MS.gene021441:intron | 45.0% |
| ! | TTACCAGCATGAGTTTGGTG+AGG | - | chr1.4:11686461-11686480 | MS.gene021441:intron | 45.0% |
| !! | AGAAGAACAGAAAGGCGTTG+AGG | + | chr1.4:11687299-11687318 | None:intergenic | 45.0% |
| !! | GCAGTATTTGCTGTCATCGT+CGG | - | chr1.4:11687196-11687215 | MS.gene021441:CDS | 45.0% |
| !! | GTAGCACCGGTACTTCATAT+TGG | - | chr1.4:11687752-11687771 | MS.gene021441:intron | 45.0% |
| !!! | GAGGGTTTGCTGAGAGATTT+TGG | - | chr1.4:11686069-11686088 | MS.gene021441:CDS | 45.0% |
| ACGCATCTGTTGCAGTACCT+TGG | - | chr1.4:11688566-11688585 | MS.gene021441:CDS | 50.0% | |
| ACTCCTCACCAAACTCATGC+TGG | + | chr1.4:11686467-11686486 | None:intergenic | 50.0% | |
| CGCATCTGTTGCAGTACCTT+GGG | - | chr1.4:11688567-11688586 | MS.gene021441:CDS | 50.0% | |
| CTACGCTCTCTAACACTACC+CGG | + | chr1.4:11686117-11686136 | None:intergenic | 50.0% | |
| GCATCTGTTGCAGTACCTTG+GGG | - | chr1.4:11688568-11688587 | MS.gene021441:CDS | 50.0% | |
| GCGATTGTGGCAAGTTGTTG+AGG | - | chr1.4:11686797-11686816 | MS.gene021441:intron | 50.0% | |
| GCTCCATGACAGGCAATTGT+CGG | - | chr1.4:11687663-11687682 | MS.gene021441:CDS | 50.0% | |
| GGACAGGTATGTTTGAGTCG+TGG | - | chr1.4:11686493-11686512 | MS.gene021441:intron | 50.0% | |
| GGAGGACCAGAATCAACTTC+AGG | + | chr1.4:11686042-11686061 | None:intergenic | 50.0% | |
| GGATCAAGGCATACAGCTTG+AGG | + | chr1.4:11688655-11688674 | None:intergenic | 50.0% | |
| GGCAAGTTGTTGAGGATGAG+AGG | - | chr1.4:11686805-11686824 | MS.gene021441:intron | 50.0% | |
| GGTCTAGTAATCGTGACTGC+TGG | - | chr1.4:11688856-11688875 | MS.gene021441:CDS | 50.0% | |
| GTTTGAAAAGAACCGCTCGC+AGG | + | chr1.4:11688548-11688567 | None:intergenic | 50.0% | |
| TCGCACAATTCCATCTTCGC+CGG | + | chr1.4:11686781-11686800 | None:intergenic | 50.0% | |
| TGAATCTGTGAACGCTGCTG+AGG | - | chr1.4:11686425-11686444 | MS.gene021441:CDS | 50.0% | |
| TGAATTGTGGACCAGGAGTC+CGG | - | chr1.4:11686095-11686114 | MS.gene021441:CDS | 50.0% | |
| TGATTCTGGTCCTCCTTTGG+TGG | - | chr1.4:11686047-11686066 | MS.gene021441:CDS | 50.0% | |
| TTGTCACCGCAGTGTGCTAT+CGG | - | chr1.4:11687533-11687552 | MS.gene021441:intron | 50.0% | |
| ! | AGTTTGGTGAGGAGTTCGAG+GGG | - | chr1.4:11686472-11686491 | MS.gene021441:intron | 50.0% |
| ! | GAGTTTGGTGAGGAGTTCGA+GGG | - | chr1.4:11686471-11686490 | MS.gene021441:intron | 50.0% |
| ! | TGAGTTTGGTGAGGAGTTCG+AGG | - | chr1.4:11686470-11686489 | MS.gene021441:intron | 50.0% |
| !! | GGGATTATTGGCTCCATGAC+AGG | - | chr1.4:11687653-11687672 | MS.gene021441:CDS | 50.0% |
| AGCAAACCCTCCACCAAAGG+AGG | + | chr1.4:11686060-11686079 | None:intergenic | 55.0% | |
| AGGTTCCGCAACTTATCCCG+AGG | - | chr1.4:11688726-11688745 | MS.gene021441:CDS | 55.0% | |
| ATCAGGCCGATAGCACACTG+CGG | + | chr1.4:11687542-11687561 | None:intergenic | 55.0% | |
| CTAGCAAGATACTGGCCGTC+CGG | + | chr1.4:11686756-11686775 | None:intergenic | 55.0% | |
| CTCAGCAAACCCTCCACCAA+AGG | + | chr1.4:11686063-11686082 | None:intergenic | 55.0% | |
| GAATTGTGGACCAGGAGTCC+GGG | - | chr1.4:11686096-11686115 | MS.gene021441:CDS | 55.0% | |
| GGCCAGTATCTTGCTAGTGC+CGG | - | chr1.4:11686759-11686778 | MS.gene021441:intron | 55.0% | |
| TCTAACACTACCCGGACTCC+TGG | + | chr1.4:11686109-11686128 | None:intergenic | 55.0% | |
| TCTGGTCCTCCTTTGGTGGA+GGG | - | chr1.4:11686051-11686070 | MS.gene021441:CDS | 55.0% | |
| TCTGTTGCAGTACCTTGGGG+TGG | - | chr1.4:11688571-11688590 | MS.gene021441:CDS | 55.0% | |
| TGTCGGACACTGACACAGGT+GGG | + | chr1.4:11687793-11687812 | None:intergenic | 55.0% | |
| TTCTGGTCCTCCTTTGGTGG+AGG | - | chr1.4:11686050-11686069 | MS.gene021441:CDS | 55.0% | |
| ! | ATCGTGACTGCTGGTTGGGA+TGG | - | chr1.4:11688865-11688884 | MS.gene021441:CDS | 55.0% |
| ! | CGGGTAGTGTTAGAGAGCGT+AGG | - | chr1.4:11686115-11686134 | MS.gene021441:CDS | 55.0% |
| ! | TCGTGACTGCTGGTTGGGAT+GGG | - | chr1.4:11688866-11688885 | MS.gene021441:CDS | 55.0% |
| CGCCGGCACTAGCAAGATAC+TGG | + | chr1.4:11686764-11686783 | None:intergenic | 60.0% | |
| GCAGTGTGCTATCGGCCTGA+TGG | - | chr1.4:11687541-11687560 | MS.gene021441:intron | 60.0% | |
| GTCGTGTCGGACACTGACAC+AGG | + | chr1.4:11687797-11687816 | None:intergenic | 60.0% | |
| GTGTCGGACACTGACACAGG+TGG | + | chr1.4:11687794-11687813 | None:intergenic | 60.0% | |
| ! | GTGCTATCGGCCTGATGGAC+AGG | - | chr1.4:11687546-11687565 | MS.gene021441:intron | 60.0% |
| !! | CTTGCTAGTGCCGGCGAAGA+TGG | - | chr1.4:11686768-11686787 | MS.gene021441:intron | 60.0% |
| GGTGAGGAGTTCGAGGGGAC+AGG | - | chr1.4:11686477-11686496 | MS.gene021441:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 11685949 | 11688933 | 11685949 | ID=MS.gene021441 |
| chr1.4 | mRNA | 11685949 | 11688933 | 11685949 | ID=MS.gene021441.t1;Parent=MS.gene021441 |
| chr1.4 | exon | 11687809 | 11688933 | 11687809 | ID=MS.gene021441.t1.exon1;Parent=MS.gene021441.t1 |
| chr1.4 | CDS | 11687809 | 11688933 | 11687809 | ID=cds.MS.gene021441.t1;Parent=MS.gene021441.t1 |
| chr1.4 | exon | 11687592 | 11687682 | 11687592 | ID=MS.gene021441.t1.exon2;Parent=MS.gene021441.t1 |
| chr1.4 | CDS | 11687592 | 11687682 | 11687592 | ID=cds.MS.gene021441.t1;Parent=MS.gene021441.t1 |
| chr1.4 | exon | 11687315 | 11687472 | 11687315 | ID=MS.gene021441.t1.exon3;Parent=MS.gene021441.t1 |
| chr1.4 | CDS | 11687315 | 11687472 | 11687315 | ID=cds.MS.gene021441.t1;Parent=MS.gene021441.t1 |
| chr1.4 | exon | 11687181 | 11687232 | 11687181 | ID=MS.gene021441.t1.exon4;Parent=MS.gene021441.t1 |
| chr1.4 | CDS | 11687181 | 11687232 | 11687181 | ID=cds.MS.gene021441.t1;Parent=MS.gene021441.t1 |
| chr1.4 | exon | 11686806 | 11686885 | 11686806 | ID=MS.gene021441.t1.exon5;Parent=MS.gene021441.t1 |
| chr1.4 | CDS | 11686806 | 11686885 | 11686806 | ID=cds.MS.gene021441.t1;Parent=MS.gene021441.t1 |
| chr1.4 | exon | 11686602 | 11686695 | 11686602 | ID=MS.gene021441.t1.exon6;Parent=MS.gene021441.t1 |
| chr1.4 | CDS | 11686602 | 11686695 | 11686602 | ID=cds.MS.gene021441.t1;Parent=MS.gene021441.t1 |
| chr1.4 | exon | 11685949 | 11686478 | 11685949 | ID=MS.gene021441.t1.exon7;Parent=MS.gene021441.t1 |
| chr1.4 | CDS | 11685949 | 11686478 | 11685949 | ID=cds.MS.gene021441.t1;Parent=MS.gene021441.t1 |
| Gene Sequence |
| Protein sequence |
