AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene022252


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022252.t1 MTR_3g078633 91.158 622 43 3 1 614 1 618 0.0 1163
MS.gene022252.t1 MTR_3g078633 91.892 518 34 2 101 614 33 546 0.0 986
MS.gene022252.t1 MTR_3g079340 50.971 618 274 12 13 614 12 616 0.0 585
MS.gene022252.t1 MTR_8g494200 25.081 614 362 24 34 598 43 607 6.75e-48 178
MS.gene022252.t1 MTR_3g081450 76.238 101 20 1 499 599 32 128 1.80e-45 159
MS.gene022252.t1 MTR_0095s0020 26.393 341 187 14 117 434 155 454 5.83e-25 110
MS.gene022252.t1 MTR_3g467360 26.404 356 205 15 272 595 209 539 9.70e-22 99.8
MS.gene022252.t1 MTR_3g467360 26.404 356 205 15 272 595 215 545 1.11e-21 99.8
MS.gene022252.t1 MTR_6g008015 24.576 354 217 13 271 595 210 542 6.30e-19 90.9
MS.gene022252.t1 MTR_6g007985 24.576 354 217 13 271 595 133 465 7.16e-19 90.5
MS.gene022252.t1 MTR_6g007975 24.791 359 211 15 271 596 210 542 3.09e-15 79.3
MS.gene022252.t1 MTR_6g008055 23.978 367 196 15 274 596 213 540 3.17e-14 76.3
MS.gene022252.t1 MTR_6g007980 22.817 355 223 13 272 597 209 541 7.87e-14 75.1
MS.gene022252.t1 MTR_6g007980 23.034 356 222 13 272 597 209 542 1.03e-13 74.7
MS.gene022252.t1 MTR_6g007980 22.969 357 222 13 272 597 209 543 1.07e-13 74.3
MS.gene022252.t1 MTR_8g011610 41.379 87 48 1 112 195 225 311 5.11e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022252.t1 AT3G48090 39.280 639 312 15 13 609 9 613 9.43e-141 423
MS.gene022252.t1 AT3G48080 37.280 625 328 16 19 603 11 611 1.54e-130 397
MS.gene022252.t1 AT3G48090 41.418 536 244 12 112 609 2 505 2.73e-128 387
MS.gene022252.t1 AT3G52430 25.641 351 204 13 264 580 175 502 5.75e-24 106
MS.gene022252.t1 AT3G52430 44.000 75 38 2 119 193 112 182 6.87e-11 65.5
MS.gene022252.t1 AT5G14930 28.319 226 127 9 398 597 293 509 3.49e-14 75.9

Find 121 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAATATCTTTGAATCTT+TGG 0.154917 3.3:-66567226 None:intergenic
GTTACTCAGAATCATGTTTA+TGG 0.160363 3.3:+66569735 MS.gene022252:CDS
TAATGCATGATTGTTCTTTA+TGG 0.162207 3.3:-66569943 None:intergenic
GGGATACGATCGGAAGATTT+TGG 0.194261 3.3:-66568008 None:intergenic
TGGTTTCTTGTGAGCCTTCC+AGG 0.205396 3.3:-66567021 None:intergenic
TTCATTTAAGGCTATGTTAA+TGG 0.209897 3.3:-66568663 None:intergenic
TACCAGGCCAAGTTCATTTA+AGG 0.230054 3.3:-66568675 None:intergenic
ACTCATGAATGATTTGCTTT+TGG 0.235513 3.3:-66568219 None:intergenic
GGCTATTCTGGCAACACTTT+GGG 0.244937 3.3:+66567965 MS.gene022252:CDS
CCTCCCATCTGCATCACTTT+TGG 0.250246 3.3:+66568029 MS.gene022252:CDS
ATGCTACAAGGAGAGAAAAT+TGG 0.262993 3.3:+66568084 MS.gene022252:CDS
GGCTAGAACTTGCAGGAGTA+TGG 0.273354 3.3:+66569474 MS.gene022252:CDS
TCGTTCCCTTCTAAGTCTTC+TGG 0.280228 3.3:-66569533 None:intergenic
TGGTGGTCCAGTGGCTATTC+TGG 0.280884 3.3:+66567953 MS.gene022252:CDS
CCGTGATGGACGTGTTTATA+TGG 0.287982 3.3:+66569637 MS.gene022252:CDS
GGCTGATAAGGATGTGTTTA+AGG 0.289164 3.3:+66569865 MS.gene022252:CDS
ACATTTGCTTGGAAATCTTC+CGG 0.306152 3.3:-66569446 None:intergenic
AGTTTCACCAAAAGTTGTTT+TGG 0.309827 3.3:-66567126 None:intergenic
TGGTATTCCAAAACAACTTT+TGG 0.322409 3.3:+66567119 MS.gene022252:CDS
TTGTCTGAGCATACTACTTC+AGG 0.335540 3.3:+66568626 MS.gene022252:CDS
AATTGAGTGCAGAGAGAATT+GGG 0.352143 3.3:+66566982 MS.gene022252:CDS
TGTCATATCTCATCACAAAA+TGG 0.352184 3.3:-66568121 None:intergenic
GAACTTCCAGAAGACTTAGA+AGG 0.361685 3.3:+66569527 MS.gene022252:CDS
ACTTAGAAGGGAACGAAGAT+TGG 0.364202 3.3:+66569540 MS.gene022252:CDS
TTACTCAGAATCATGTTTAT+GGG 0.367047 3.3:+66569736 MS.gene022252:CDS
ACATGCTGCTTGTAGGCTAA+TGG 0.368160 3.3:+66568319 MS.gene022252:CDS
CATTTGCTTGGAAATCTTCC+GGG 0.374664 3.3:-66569445 None:intergenic
TAAGTTCCAAAGGGTCTATA+AGG 0.375128 3.3:-66568392 None:intergenic
TTGAGTCCTTATAGACCCTT+TGG 0.379079 3.3:+66568386 MS.gene022252:CDS
TAGAAGACTAGTTGAGCCTT+TGG 0.383000 3.3:+66569583 MS.gene022252:CDS
TCACAAGACATGCTGCTTGT+AGG 0.383836 3.3:+66568312 MS.gene022252:CDS
TCAAGCAGCTGCAGCATTAG+AGG 0.386121 3.3:+66569283 MS.gene022252:CDS
AGAGGGGCTAGGAGGATTCT+TGG 0.392921 3.3:-66568149 None:intergenic
CTAAAGGAGGAAGGCCAAAA+AGG 0.396329 3.3:+66569660 MS.gene022252:CDS
CATGCTGCTTGTAGGCTAAT+GGG 0.400385 3.3:+66568320 MS.gene022252:CDS
CATCAGGTGATTTCAAAGAT+TGG 0.412012 3.3:+66567099 MS.gene022252:CDS
TCTAGAAGATAGTGTCTCTC+TGG 0.413955 3.3:-66567041 None:intergenic
TGGCTATTCTGGCAACACTT+TGG 0.417209 3.3:+66567964 MS.gene022252:CDS
TGCTACAAGGAGAGAAAATT+GGG 0.419960 3.3:+66568085 MS.gene022252:CDS
GAATTGAGTGCAGAGAGAAT+TGG 0.422565 3.3:+66566981 MS.gene022252:CDS
ACATCATCAAAAGGCTTGTC+AGG 0.423403 3.3:-66569785 None:intergenic
AACGAAGATTGGATTAAGAT+AGG 0.426436 3.3:+66569551 MS.gene022252:CDS
GTACAGAGGCTAGAACTTGC+AGG 0.431181 3.3:+66569467 MS.gene022252:CDS
CTAGCCTCTGTACATTTGCT+TGG 0.431295 3.3:-66569457 None:intergenic
TGTTGTGTACTTAGACCAAC+TGG 0.432263 3.3:+66568592 MS.gene022252:CDS
TGAGAAAGATGAGGCTGATA+AGG 0.438651 3.3:+66569853 MS.gene022252:CDS
CTAATTACTATAGACATTCA+AGG 0.443986 3.3:+66569612 MS.gene022252:CDS
TAAGGAAAAGGTTGAGGCAT+TGG 0.451260 3.3:+66569808 MS.gene022252:CDS
ATGACCTGCAGAATTGCATC+AGG 0.455008 3.3:-66568467 None:intergenic
TTTCGTTCACTTAAAAGCAT+TGG 0.464216 3.3:+66567167 MS.gene022252:CDS
AACATAGCCTTAAATGAACT+TGG 0.464407 3.3:+66568668 MS.gene022252:CDS
GATTGTTCTTTATGGTCTGT+TGG 0.470082 3.3:-66569935 None:intergenic
GGAAAAGGTTGAGGCATTGG+AGG 0.475367 3.3:+66569811 MS.gene022252:CDS
CATTATGAGAAGAGGGATGA+AGG 0.484238 3.3:+66569710 MS.gene022252:CDS
AGGTTATTACGATGCATTCA+AGG 0.484769 3.3:+66569412 MS.gene022252:CDS
AATATGTGATTTCCAACTAA+AGG 0.485127 3.3:-66568056 None:intergenic
TGGATTCTACGTTTGTTAAG+TGG 0.487040 3.3:+66569900 MS.gene022252:CDS
GGAAGTCATTTGATGCGTCC+TGG 0.489099 3.3:+66567003 MS.gene022252:CDS
TGCACTACAAGTGGCGATGA+AGG 0.491111 3.3:+66568422 MS.gene022252:CDS
AGCCTTAAATGAACTTGGCC+TGG 0.499934 3.3:+66568673 MS.gene022252:CDS
GCAGAAAATGTAAGTTCCAA+AGG 0.507553 3.3:-66568402 None:intergenic
GTTGGAACATTATGAGAAGA+GGG 0.510509 3.3:+66569703 MS.gene022252:CDS
TTTGGTCAAAAGAAGATAGA+GGG 0.515653 3.3:-66568166 None:intergenic
GAAGTAGTATGCTCAGACAA+AGG 0.517071 3.3:-66568623 None:intergenic
CCAGTTCAAAATGTTGTCGC+AGG 0.517117 3.3:-66568547 None:intergenic
TTCATGAGTGAATCGAGTCT+TGG 0.519468 3.3:+66568233 MS.gene022252:CDS
AGATAGCCGCTGTGGAGGAT+AGG 0.526622 3.3:+66569342 MS.gene022252:CDS
TGGTAACAATGAAGCTGCTA+AGG 0.528491 3.3:+66567187 MS.gene022252:CDS
TGATGTTAAGGAAAAGGTTG+AGG 0.529296 3.3:+66569802 MS.gene022252:CDS
GCTAGAACTTGCAGGAGTAT+GGG 0.533503 3.3:+66569475 MS.gene022252:CDS
CAAAAGAAGATAGAGGGGCT+AGG 0.540745 3.3:-66568160 None:intergenic
AAACCCTGATGCAATTCTGC+AGG 0.542505 3.3:+66568463 MS.gene022252:CDS
AATGAATATGTAGGTGGAGA+GGG 0.543792 3.3:+66567887 MS.gene022252:intron
ATTCTACGTTTGTTAAGTGG+TGG 0.545586 3.3:+66569903 MS.gene022252:CDS
GGACGTGTTTATATGGCTAA+AGG 0.547868 3.3:+66569644 MS.gene022252:CDS
TAGGTATACACAAAGATGGT+TGG 0.548252 3.3:+66569685 MS.gene022252:CDS
GGAGGATAGGATGAAAGCAC+TGG 0.548822 3.3:+66569355 MS.gene022252:CDS
TCATCACAAAATGGAAGAAG+TGG 0.551943 3.3:-66568112 None:intergenic
CAGAAAATGTAAGTTCCAAA+GGG 0.551969 3.3:-66568401 None:intergenic
ATCATGTTTATGGGCTGAAG+TGG 0.554848 3.3:+66569745 MS.gene022252:CDS
AACTTCCAGAAGACTTAGAA+GGG 0.561390 3.3:+66569528 MS.gene022252:CDS
GGTATAGGTATACACAAAGA+TGG 0.561423 3.3:+66569681 MS.gene022252:CDS
GTCATTTGATGCGTCCTGGA+AGG 0.564068 3.3:+66567007 MS.gene022252:CDS
GGTTGGAACATTATGAGAAG+AGG 0.569597 3.3:+66569702 MS.gene022252:CDS
AAGCTGATGATAACTTCTGA+AGG 0.572532 3.3:-66567071 None:intergenic
ATGTTTATGGGCTGAAGTGG+AGG 0.574694 3.3:+66569748 MS.gene022252:CDS
TGGAGGAATTTATAAGCAAG+TGG 0.588253 3.3:+66569828 MS.gene022252:CDS
AAGGGTCTATAAGGACTCAA+AGG 0.589494 3.3:-66568383 None:intergenic
GAACCAAAAGTGATGCAGAT+GGG 0.597257 3.3:-66568032 None:intergenic
AAAGTCATCACTTGAAGATG+AGG 0.597512 3.3:+66567250 MS.gene022252:CDS
ACAGACATGGCTTCATCAAG+AGG 0.598028 3.3:+66566942 None:intergenic
CAATGAATATGTAGGTGGAG+AGG 0.598082 3.3:+66567886 MS.gene022252:intron
CAAAAGTGATGCAGATGGGA+GGG 0.600211 3.3:-66568028 None:intergenic
TTTGCAGGACACTCGTCTGG+TGG 0.600895 3.3:+66567936 MS.gene022252:CDS
AAGCTCTGAAGAAGAAACTG+AGG 0.602722 3.3:+66568508 MS.gene022252:CDS
ACAAAAGATAGCCGCTGTGG+AGG 0.604033 3.3:+66569337 MS.gene022252:CDS
CAGCTGCAGCATTAGAGGAA+CGG 0.605468 3.3:+66569288 MS.gene022252:CDS
CCAAAAGTGATGCAGATGGG+AGG 0.606417 3.3:-66568029 None:intergenic
AAGAAGATAGAGGGGCTAGG+AGG 0.609386 3.3:-66568157 None:intergenic
AGTGTTGCCAGAATAGCCAC+TGG 0.614618 3.3:-66567960 None:intergenic
AGAACCAAAAGTGATGCAGA+TGG 0.615992 3.3:-66568033 None:intergenic
GGACAGTTACAGAGAAACGC+GGG 0.617330 3.3:+66569376 MS.gene022252:CDS
TTGGTCAAAAGAAGATAGAG+GGG 0.624401 3.3:-66568165 None:intergenic
CGTGTTTATATGGCTAAAGG+AGG 0.625592 3.3:+66569647 MS.gene022252:CDS
TTTATATGGCTAAAGGAGGA+AGG 0.625809 3.3:+66569651 MS.gene022252:CDS
ATTCAAGGATCAACTAGACC+CGG 0.628140 3.3:+66569427 MS.gene022252:CDS
CCATATAAACACGTCCATCA+CGG 0.630887 3.3:-66569637 None:intergenic
GCAGATGGGAGGGATACGAT+CGG 0.631808 3.3:-66568018 None:intergenic
TATGAGAAGAGGGATGAAGG+TGG 0.634440 3.3:+66569713 MS.gene022252:CDS
ACACTCGTCTGGTGGTCCAG+TGG 0.641162 3.3:+66567944 MS.gene022252:CDS
AGACATTCAAGGAACCGTGA+TGG 0.644212 3.3:+66569623 MS.gene022252:CDS
TCTGAGCATACTACTTCAGG+TGG 0.657099 3.3:+66568629 MS.gene022252:CDS
TAGTAATTAGCAATATCCAA+AGG 0.665329 3.3:-66569599 None:intergenic
TGACCTGCAGAATTGCATCA+GGG 0.674595 3.3:-66568466 None:intergenic
GACATGGCTTCATCAAGAGG+TGG 0.675881 3.3:+66566945 None:intergenic
GCTACAAAAGATAGCCGCTG+TGG 0.677260 3.3:+66569334 MS.gene022252:CDS
ATTTCCAAGCAAATGTACAG+AGG 0.698435 3.3:+66569453 MS.gene022252:CDS
TGGACAGTTACAGAGAAACG+CGG 0.726781 3.3:+66569375 MS.gene022252:CDS
CAAGTGGCATGAGAAAGATG+AGG 0.734716 3.3:+66569844 MS.gene022252:CDS
GACAGTTACAGAGAAACGCG+GGG 0.746046 3.3:+66569377 MS.gene022252:CDS
TTTCATCCTATCCTCCACAG+CGG 0.790893 3.3:-66569348 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATACTATATATACTAAAA+AGG + chr3.3:66569118-66569137 MS.gene022252:intron 10.0%
!! ATATATTTCAATGAATATGT+AGG + chr3.3:66567878-66567897 MS.gene022252:intron 15.0%
!! ATATGAGTATATAAAGTAAA+AGG - chr3.3:66568786-66568805 None:intergenic 15.0%
!!! ACTTTAAAATTGAGAAAAAT+AGG - chr3.3:66568718-66568737 None:intergenic 15.0%
!!! CTTTAAAATTGAGAAAAATA+GGG - chr3.3:66568717-66568736 None:intergenic 15.0%
!! GTAGTAATTTATTAGACATA+AGG - chr3.3:66568908-66568927 None:intergenic 20.0%
!! TAGAAACATATTTAATGACT+CGG + chr3.3:66567733-66567752 MS.gene022252:intron 20.0%
!! TCAAAATATCTTTGAATCTT+TGG - chr3.3:66567229-66567248 None:intergenic 20.0%
!! TTAAGTATAGATGCTATAAA+AGG - chr3.3:66567356-66567375 None:intergenic 20.0%
!! TTTGCATAATAGATCATAAA+TGG - chr3.3:66567312-66567331 None:intergenic 20.0%
!!! AAACTAATATTGAGTTGTTT+TGG - chr3.3:66567407-66567426 None:intergenic 20.0%
!!! AATGTCATGTATAATTTGTT+GGG + chr3.3:66567657-66567676 MS.gene022252:intron 20.0%
!!! GTTATTTTTTTCATGTTCAA+TGG - chr3.3:66569186-66569205 None:intergenic 20.0%
!!! TTTTGACCAAAAATTTGAAA+CGG + chr3.3:66568178-66568197 MS.gene022252:CDS 20.0%
! AATATGTGATTTCCAACTAA+AGG - chr3.3:66568059-66568078 None:intergenic 25.0%
! AGAAACATATTTAATGACTC+GGG + chr3.3:66567734-66567753 MS.gene022252:intron 25.0%
! CATGATCAGATATAATTGAA+TGG + chr3.3:66568927-66568946 MS.gene022252:intron 25.0%
! CTAATTACTATAGACATTCA+AGG + chr3.3:66569612-66569631 MS.gene022252:CDS 25.0%
! TAATGCATGATTGTTCTTTA+TGG - chr3.3:66569946-66569965 None:intergenic 25.0%
! TAGTAATTAGCAATATCCAA+AGG - chr3.3:66569602-66569621 None:intergenic 25.0%
! TATGTCACTAATATTGTATC+AGG - chr3.3:66568823-66568842 None:intergenic 25.0%
! TATTAATTTCATTTCCTCCA+AGG - chr3.3:66569101-66569120 None:intergenic 25.0%
! TATTTCAATGAATATGTAGG+TGG + chr3.3:66567881-66567900 MS.gene022252:intron 25.0%
! TCTCATGTATTATGTATGAT+AGG - chr3.3:66569006-66569025 None:intergenic 25.0%
! TGATACTATCAAATATCACA+TGG + chr3.3:66567808-66567827 MS.gene022252:intron 25.0%
! TTAACATTAGAGACTCAATT+AGG + chr3.3:66567426-66567445 MS.gene022252:intron 25.0%
! TTACTCAGAATCATGTTTAT+GGG + chr3.3:66569736-66569755 MS.gene022252:CDS 25.0%
! TTTGAACTGGTAAAAAACTT+TGG + chr3.3:66568560-66568579 MS.gene022252:CDS 25.0%
!! CAATGTCATGTATAATTTGT+TGG + chr3.3:66567656-66567675 MS.gene022252:intron 25.0%
!! TGCATAACATTTTTATGCAT+TGG + chr3.3:66569068-66569087 MS.gene022252:intron 25.0%
!! TTCATTTAAGGCTATGTTAA+TGG - chr3.3:66568666-66568685 None:intergenic 25.0%
!! TTTTCCTTAACATCATCAAA+AGG - chr3.3:66569797-66569816 None:intergenic 25.0%
!!! ATCACATGGATTTGTTAAAA+AGG + chr3.3:66567822-66567841 MS.gene022252:intron 25.0%
!!! CATTTTTAGCATTAAGGATA+GGG - chr3.3:66567382-66567401 None:intergenic 25.0%
!!! TAACATTTTTATGCATTGGT+TGG + chr3.3:66569072-66569091 MS.gene022252:intron 25.0%
!!! TCATTTTTAGCATTAAGGAT+AGG - chr3.3:66567383-66567402 None:intergenic 25.0%
!!! TTGGTTCATTTTTAGCATTA+AGG - chr3.3:66567388-66567407 None:intergenic 25.0%
!!! TTTTGATGATGTTAAGGAAA+AGG + chr3.3:66569796-66569815 MS.gene022252:CDS 25.0%
AACGAAGATTGGATTAAGAT+AGG + chr3.3:66569551-66569570 MS.gene022252:CDS 30.0%
AAGAATAAAAGTTGCATACC+AGG - chr3.3:66568694-66568713 None:intergenic 30.0%
AAGGCAAAATGATAAAACTC+TGG + chr3.3:66569137-66569156 MS.gene022252:intron 30.0%
ACTTGAAGGAACTAAAAAGT+AGG - chr3.3:66567589-66567608 None:intergenic 30.0%
ATGTTATGCATATATCAGCA+TGG - chr3.3:66569058-66569077 None:intergenic 30.0%
ATTTGATTCATGAACCAAGT+TGG - chr3.3:66567464-66567483 None:intergenic 30.0%
CAGAAAATGTAAGTTCCAAA+GGG - chr3.3:66568404-66568423 None:intergenic 30.0%
GTTACTCAGAATCATGTTTA+TGG + chr3.3:66569735-66569754 MS.gene022252:CDS 30.0%
TGTCATATCTCATCACAAAA+TGG - chr3.3:66568124-66568143 None:intergenic 30.0%
TTTGGTCAAAAGAAGATAGA+GGG - chr3.3:66568169-66568188 None:intergenic 30.0%
! AACATAGCCTTAAATGAACT+TGG + chr3.3:66568668-66568687 MS.gene022252:CDS 30.0%
! ACATATTTTCTCATGCTACA+AGG + chr3.3:66568072-66568091 MS.gene022252:CDS 30.0%
! ACATGACATTGACATACTTT+TGG - chr3.3:66567647-66567666 None:intergenic 30.0%
! AGTTTCACCAAAAGTTGTTT+TGG - chr3.3:66567129-66567148 None:intergenic 30.0%
! ATACTTTTGGTCCTTAAAGA+GGG - chr3.3:66567634-66567653 None:intergenic 30.0%
! TGGTATTCCAAAACAACTTT+TGG + chr3.3:66567119-66567138 MS.gene022252:CDS 30.0%
! TGTGTATACCTATACCTTTT+TGG - chr3.3:66569677-66569696 None:intergenic 30.0%
! TTTCGTTCACTTAAAAGCAT+TGG + chr3.3:66567167-66567186 MS.gene022252:CDS 30.0%
! TTTTGGTCAAAAGAAGATAG+AGG - chr3.3:66568170-66568189 None:intergenic 30.0%
!!! ACTCATGAATGATTTGCTTT+TGG - chr3.3:66568222-66568241 None:intergenic 30.0%
!!! ATGTTTTTAGTCCCTCTTTA+AGG + chr3.3:66567620-66567639 MS.gene022252:intron 30.0%
!!! CTCATGAATGATTTGCTTTT+GGG - chr3.3:66568221-66568240 None:intergenic 30.0%
!!! GTTTAAGGATGTGTTTTTAG+TGG + chr3.3:66569880-66569899 MS.gene022252:CDS 30.0%
AAAGTCATCACTTGAAGATG+AGG + chr3.3:66567250-66567269 MS.gene022252:CDS 35.0%
AACTTCCAGAAGACTTAGAA+GGG + chr3.3:66569528-66569547 MS.gene022252:CDS 35.0%
AAGCTGATGATAACTTCTGA+AGG - chr3.3:66567074-66567093 None:intergenic 35.0%
AATGAATATGTAGGTGGAGA+GGG + chr3.3:66567887-66567906 MS.gene022252:intron 35.0%
AATTGAGTGCAGAGAGAATT+GGG + chr3.3:66566982-66567001 MS.gene022252:CDS 35.0%
ACATTTGCTTGGAAATCTTC+CGG - chr3.3:66569449-66569468 None:intergenic 35.0%
AGGTTATTACGATGCATTCA+AGG + chr3.3:66569412-66569431 MS.gene022252:CDS 35.0%
ATGCTACAAGGAGAGAAAAT+TGG + chr3.3:66568084-66568103 MS.gene022252:CDS 35.0%
ATTTCCAAGCAAATGTACAG+AGG + chr3.3:66569453-66569472 MS.gene022252:CDS 35.0%
CATCAGGTGATTTCAAAGAT+TGG + chr3.3:66567099-66567118 MS.gene022252:CDS 35.0%
CATGCAACTTTGTAACTTGA+AGG - chr3.3:66567603-66567622 None:intergenic 35.0%
GATTGTTCTTTATGGTCTGT+TGG - chr3.3:66569938-66569957 None:intergenic 35.0%
GCAGAAAATGTAAGTTCCAA+AGG - chr3.3:66568405-66568424 None:intergenic 35.0%
GGCAATTTATTTGTCCAACT+TGG + chr3.3:66567447-66567466 MS.gene022252:intron 35.0%
GGTATAGGTATACACAAAGA+TGG + chr3.3:66569681-66569700 MS.gene022252:CDS 35.0%
GTTGGAACATTATGAGAAGA+GGG + chr3.3:66569703-66569722 MS.gene022252:CDS 35.0%
TAAGTTCCAAAGGGTCTATA+AGG - chr3.3:66568395-66568414 None:intergenic 35.0%
TAGGTATACACAAAGATGGT+TGG + chr3.3:66569685-66569704 MS.gene022252:CDS 35.0%
TCATCACAAAATGGAAGAAG+TGG - chr3.3:66568115-66568134 None:intergenic 35.0%
TGATGTTAAGGAAAAGGTTG+AGG + chr3.3:66569802-66569821 MS.gene022252:CDS 35.0%
TGCTACAAGGAGAGAAAATT+GGG + chr3.3:66568085-66568104 MS.gene022252:CDS 35.0%
TGGAGGAATTTATAAGCAAG+TGG + chr3.3:66569828-66569847 MS.gene022252:CDS 35.0%
TTGGTCAAAAGAAGATAGAG+GGG - chr3.3:66568168-66568187 None:intergenic 35.0%
TTTATATGGCTAAAGGAGGA+AGG + chr3.3:66569651-66569670 MS.gene022252:CDS 35.0%
! AAGAAGCAGATAGTTTTTGC+AGG + chr3.3:66567921-66567940 MS.gene022252:CDS 35.0%
! ACAAAGGAAGATTTTCCAGT+TGG - chr3.3:66568610-66568629 None:intergenic 35.0%
! ATTCTACGTTTGTTAAGTGG+TGG + chr3.3:66569903-66569922 MS.gene022252:CDS 35.0%
! ATTTGTTGGGACTGAAAAGT+GGG + chr3.3:66567670-66567689 MS.gene022252:intron 35.0%
! CATACTTTTGGTCCTTAAAG+AGG - chr3.3:66567635-66567654 None:intergenic 35.0%
! GTGCAACCGTTTCAAATTTT+TGG - chr3.3:66568187-66568206 None:intergenic 35.0%
! TACATTTTCTGCACTACAAG+TGG + chr3.3:66568413-66568432 MS.gene022252:CDS 35.0%
! TGGAGTTGGAAAGTTTTCTA+AGG - chr3.3:66567991-66568010 None:intergenic 35.0%
! TGGATTCTACGTTTGTTAAG+TGG + chr3.3:66569900-66569919 MS.gene022252:CDS 35.0%
!! AATTTGTTGGGACTGAAAAG+TGG + chr3.3:66567669-66567688 MS.gene022252:intron 35.0%
!!! ACTTTTGGTTCTCCTTTAGT+TGG + chr3.3:66568044-66568063 MS.gene022252:CDS 35.0%
!!! CAAGCCTTTTGATGATGTTA+AGG + chr3.3:66569790-66569809 MS.gene022252:CDS 35.0%
AAGGGTCTATAAGGACTCAA+AGG - chr3.3:66568386-66568405 None:intergenic 40.0%
ACATCATCAAAAGGCTTGTC+AGG - chr3.3:66569788-66569807 None:intergenic 40.0%
ACTTAGAAGGGAACGAAGAT+TGG + chr3.3:66569540-66569559 MS.gene022252:CDS 40.0%
AGAACCAAAAGTGATGCAGA+TGG - chr3.3:66568036-66568055 None:intergenic 40.0%
ATTCAAGGATCAACTAGACC+CGG + chr3.3:66569427-66569446 MS.gene022252:CDS 40.0%
CAATGAATATGTAGGTGGAG+AGG + chr3.3:66567886-66567905 MS.gene022252:intron 40.0%
CATTATGAGAAGAGGGATGA+AGG + chr3.3:66569710-66569729 MS.gene022252:CDS 40.0%
CATTTGCTTGGAAATCTTCC+GGG - chr3.3:66569448-66569467 None:intergenic 40.0%
CCATATAAACACGTCCATCA+CGG - chr3.3:66569640-66569659 None:intergenic 40.0%
CGTGTTTATATGGCTAAAGG+AGG + chr3.3:66569647-66569666 MS.gene022252:CDS 40.0%
GAACCAAAAGTGATGCAGAT+GGG - chr3.3:66568035-66568054 None:intergenic 40.0%
GAACTTCCAGAAGACTTAGA+AGG + chr3.3:66569527-66569546 MS.gene022252:CDS 40.0%
GAAGTAGTATGCTCAGACAA+AGG - chr3.3:66568626-66568645 None:intergenic 40.0%
GAATTGAGTGCAGAGAGAAT+TGG + chr3.3:66566981-66567000 MS.gene022252:CDS 40.0%
GGACGTGTTTATATGGCTAA+AGG + chr3.3:66569644-66569663 MS.gene022252:CDS 40.0%
GGCTGATAAGGATGTGTTTA+AGG + chr3.3:66569865-66569884 MS.gene022252:CDS 40.0%
GGTTGGAACATTATGAGAAG+AGG + chr3.3:66569702-66569721 MS.gene022252:CDS 40.0%
TAAGGAAAAGGTTGAGGCAT+TGG + chr3.3:66569808-66569827 MS.gene022252:CDS 40.0%
TACCAGGCCAAGTTCATTTA+AGG - chr3.3:66568678-66568697 None:intergenic 40.0%
TCTAGAAGATAGTGTCTCTC+TGG - chr3.3:66567044-66567063 None:intergenic 40.0%
TGAGAAAGATGAGGCTGATA+AGG + chr3.3:66569853-66569872 MS.gene022252:CDS 40.0%
TGGTAACAATGAAGCTGCTA+AGG + chr3.3:66567187-66567206 MS.gene022252:CDS 40.0%
TGTTGTGTACTTAGACCAAC+TGG + chr3.3:66568592-66568611 MS.gene022252:CDS 40.0%
TTCATGAGTGAATCGAGTCT+TGG + chr3.3:66568233-66568252 MS.gene022252:CDS 40.0%
TTGAGTCCTTATAGACCCTT+TGG + chr3.3:66568386-66568405 MS.gene022252:CDS 40.0%
TTGTCTGAGCATACTACTTC+AGG + chr3.3:66568626-66568645 MS.gene022252:CDS 40.0%
! AATGTTGTCGCAGGCTTTTA+AGG - chr3.3:66568541-66568560 None:intergenic 40.0%
! ATCATCAGCTTTTCAGCATC+AGG + chr3.3:66567083-66567102 MS.gene022252:CDS 40.0%
! ATCATGTTTATGGGCTGAAG+TGG + chr3.3:66569745-66569764 MS.gene022252:CDS 40.0%
! ATGTTGTCGCAGGCTTTTAA+GGG - chr3.3:66568540-66568559 None:intergenic 40.0%
! TAGAAGACTAGTTGAGCCTT+TGG + chr3.3:66569583-66569602 MS.gene022252:CDS 40.0%
!! AAGCTCTGAAGAAGAAACTG+AGG + chr3.3:66568508-66568527 MS.gene022252:CDS 40.0%
AAACCCTGATGCAATTCTGC+AGG + chr3.3:66568463-66568482 MS.gene022252:CDS 45.0%
AGACATTCAAGGAACCGTGA+TGG + chr3.3:66569623-66569642 MS.gene022252:CDS 45.0%
AGCCTTAAATGAACTTGGCC+TGG + chr3.3:66568673-66568692 MS.gene022252:CDS 45.0%
ATGACCTGCAGAATTGCATC+AGG - chr3.3:66568470-66568489 None:intergenic 45.0%
CAAAAGAAGATAGAGGGGCT+AGG - chr3.3:66568163-66568182 None:intergenic 45.0%
CAAAAGTGATGCAGATGGGA+GGG - chr3.3:66568031-66568050 None:intergenic 45.0%
CAAGTGGCATGAGAAAGATG+AGG + chr3.3:66569844-66569863 MS.gene022252:CDS 45.0%
CCAGTTCAAAATGTTGTCGC+AGG - chr3.3:66568550-66568569 None:intergenic 45.0%
CTAAAGGAGGAAGGCCAAAA+AGG + chr3.3:66569660-66569679 MS.gene022252:CDS 45.0%
CTAGCCTCTGTACATTTGCT+TGG - chr3.3:66569460-66569479 None:intergenic 45.0%
GGCTATTCTGGCAACACTTT+GGG + chr3.3:66567965-66567984 MS.gene022252:CDS 45.0%
GGGACTGAAAAGTGGGTATA+GGG + chr3.3:66567677-66567696 MS.gene022252:intron 45.0%
TATGAGAAGAGGGATGAAGG+TGG + chr3.3:66569713-66569732 MS.gene022252:CDS 45.0%
TCGTTCCCTTCTAAGTCTTC+TGG - chr3.3:66569536-66569555 None:intergenic 45.0%
TCTGAGCATACTACTTCAGG+TGG + chr3.3:66568629-66568648 MS.gene022252:CDS 45.0%
TGACCTGCAGAATTGCATCA+GGG - chr3.3:66568469-66568488 None:intergenic 45.0%
TGGACAGTTACAGAGAAACG+CGG + chr3.3:66569375-66569394 MS.gene022252:CDS 45.0%
TGGCTATTCTGGCAACACTT+TGG + chr3.3:66567964-66567983 MS.gene022252:CDS 45.0%
TGGGACTGAAAAGTGGGTAT+AGG + chr3.3:66567676-66567695 MS.gene022252:intron 45.0%
TTTCATCCTATCCTCCACAG+CGG - chr3.3:66569351-66569370 None:intergenic 45.0%
! ACATGCTGCTTGTAGGCTAA+TGG + chr3.3:66568319-66568338 MS.gene022252:CDS 45.0%
! ATGTTTATGGGCTGAAGTGG+AGG + chr3.3:66569748-66569767 MS.gene022252:CDS 45.0%
! CATGCTGCTTGTAGGCTAAT+GGG + chr3.3:66568320-66568339 MS.gene022252:CDS 45.0%
! CCTGCGACAACATTTTGAAC+TGG + chr3.3:66568547-66568566 MS.gene022252:CDS 45.0%
! GAGGAAGGCCAAAAAGGTAT+AGG + chr3.3:66569666-66569685 MS.gene022252:CDS 45.0%
! GCTAGAACTTGCAGGAGTAT+GGG + chr3.3:66569475-66569494 MS.gene022252:CDS 45.0%
! GGGATACGATCGGAAGATTT+TGG - chr3.3:66568011-66568030 None:intergenic 45.0%
! TCACAAGACATGCTGCTTGT+AGG + chr3.3:66568312-66568331 MS.gene022252:CDS 45.0%
! TGTTGTCGCAGGCTTTTAAG+GGG - chr3.3:66568539-66568558 None:intergenic 45.0%
!! CCGTGATGGACGTGTTTATA+TGG + chr3.3:66569637-66569656 MS.gene022252:CDS 45.0%
!! TATGCATTGGTTGGACACCT+TGG + chr3.3:66569081-66569100 MS.gene022252:intron 45.0%
!!! CGATCGGAAGATTTTGGAGT+TGG - chr3.3:66568005-66568024 None:intergenic 45.0%
AAGAAGATAGAGGGGCTAGG+AGG - chr3.3:66568160-66568179 None:intergenic 50.0%
ACAAAAGATAGCCGCTGTGG+AGG + chr3.3:66569337-66569356 MS.gene022252:CDS 50.0%
ACGCGGGGACATCAGAAAAA+AGG + chr3.3:66569392-66569411 MS.gene022252:CDS 50.0%
AGTGTTGCCAGAATAGCCAC+TGG - chr3.3:66567963-66567982 None:intergenic 50.0%
CAGCTGCAGCATTAGAGGAA+CGG + chr3.3:66569288-66569307 MS.gene022252:CDS 50.0%
CCAAAAGTGATGCAGATGGG+AGG - chr3.3:66568032-66568051 None:intergenic 50.0%
GACAGTTACAGAGAAACGCG+GGG + chr3.3:66569377-66569396 MS.gene022252:CDS 50.0%
GCTACAAAAGATAGCCGCTG+TGG + chr3.3:66569334-66569353 MS.gene022252:CDS 50.0%
GGAAGTCATTTGATGCGTCC+TGG + chr3.3:66567003-66567022 MS.gene022252:CDS 50.0%
GGACAGTTACAGAGAAACGC+GGG + chr3.3:66569376-66569395 MS.gene022252:CDS 50.0%
GGCTAGAACTTGCAGGAGTA+TGG + chr3.3:66569474-66569493 MS.gene022252:CDS 50.0%
GTACAGAGGCTAGAACTTGC+AGG + chr3.3:66569467-66569486 MS.gene022252:CDS 50.0%
GTCATTTGATGCGTCCTGGA+AGG + chr3.3:66567007-66567026 MS.gene022252:CDS 50.0%
TCAAGCAGCTGCAGCATTAG+AGG + chr3.3:66569283-66569302 MS.gene022252:CDS 50.0%
TGCACTACAAGTGGCGATGA+AGG + chr3.3:66568422-66568441 MS.gene022252:CDS 50.0%
TGGTTTCTTGTGAGCCTTCC+AGG - chr3.3:66567024-66567043 None:intergenic 50.0%
! CCTCCCATCTGCATCACTTT+TGG + chr3.3:66568029-66568048 MS.gene022252:CDS 50.0%
! GGAGGATAGGATGAAAGCAC+TGG + chr3.3:66569355-66569374 MS.gene022252:CDS 50.0%
! GTTTTTGCAGGACACTCGTC+TGG + chr3.3:66567933-66567952 MS.gene022252:CDS 50.0%
!! GGAAAAGGTTGAGGCATTGG+AGG + chr3.3:66569811-66569830 MS.gene022252:CDS 50.0%
AGAGGGGCTAGGAGGATTCT+TGG - chr3.3:66568152-66568171 None:intergenic 55.0%
AGATAGCCGCTGTGGAGGAT+AGG + chr3.3:66569342-66569361 MS.gene022252:CDS 55.0%
GCAGATGGGAGGGATACGAT+CGG - chr3.3:66568021-66568040 None:intergenic 55.0%
TGGTGGTCCAGTGGCTATTC+TGG + chr3.3:66567953-66567972 MS.gene022252:CDS 55.0%
TTTGCAGGACACTCGTCTGG+TGG + chr3.3:66567936-66567955 MS.gene022252:CDS 55.0%
!! GCATTGGTTGGACACCTTGG+AGG + chr3.3:66569084-66569103 MS.gene022252:intron 55.0%
ACACTCGTCTGGTGGTCCAG+TGG + chr3.3:66567944-66567963 MS.gene022252:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 66566948 66569985 66566948 ID=MS.gene022252
chr3.3 mRNA 66566948 66569985 66566948 ID=MS.gene022252.t1;Parent=MS.gene022252
chr3.3 exon 66566948 66567271 66566948 ID=MS.gene022252.t1.exon1;Parent=MS.gene022252.t1
chr3.3 CDS 66566948 66567271 66566948 ID=cds.MS.gene022252.t1;Parent=MS.gene022252.t1
chr3.3 exon 66567900 66568694 66567900 ID=MS.gene022252.t1.exon2;Parent=MS.gene022252.t1
chr3.3 CDS 66567900 66568694 66567900 ID=cds.MS.gene022252.t1;Parent=MS.gene022252.t1
chr3.3 exon 66569260 66569985 66569260 ID=MS.gene022252.t1.exon3;Parent=MS.gene022252.t1
chr3.3 CDS 66569260 66569985 66569260 ID=cds.MS.gene022252.t1;Parent=MS.gene022252.t1
Gene Sequence

>MS.gene022252

ATGGCTTCATCAAGAGGTGGTAGTAAGATCAAAGAATTGAGTGCAGAGAGAATTGGGAAGTCATTTGATGCGTCCTGGAAGGCTCACAAGAAACCAGAGAGACACTATCTTCTAGAAAAGAATCCTTCAGAAGTTATCATCAGCTTTTCAGCATCAGGTGATTTCAAAGATTGGTATTCCAAAACAACTTTTGGTGAAACTGAGATAGATCTTAAACTATTTCGTTCACTTAAAAGCATTGGTAACAATGAAGCTGCTAAGGTTAATCAATTTTTTCTCCAAAGATTCAAAGATATTTTGACAAAGTCATCACTTGAAGATGAGGTATTATATATGTCAAAATACACATCTCTCTATCTTACCATTTATGATCTATTATGCAAACTTCATTTTTCAGTTTTCTTTCCTTTTATAGCATCTATACTTAACTACCCTATCCTTAATGCTAAAAATGAACCAAAACAACTCAATATTAGTTTTAACATTAGAGACTCAATTAGGCAATTTATTTGTCCAACTTGGTTCATGAATCAAATGAGCAAAACTTAACTTAAGTTGAAAATTAATTTTGTTAATTATATGTTTAAATATCGTTTTAGTTTGCATAAAATTTACATATTTTGTTTTTATTCTCTATACCTACTTTTTAGTTCCTTCAAGTTACAAAGTTGCATGTTTTTAGTCCCTCTTTAAGGACCAAAAGTATGTCAATGTCATGTATAATTTGTTGGGACTGAAAAGTGGGTATAGGGACTAATAGTAAAATTATAGATAACTATAGAGATTAGAAACATATTTAATGACTCGGGTTTTGTATAAGTAGATTCGTTTGATTGATGACTATGTTAGAACTATTTCAGTGATACTATCAAATATCACATGGATTTGTTAAAAAGGTTATAAATGTTACTTTCTTTTTCTAAAGAAAACATATATTTCAATGAATATGTAGGTGGAGAGGGCAATGAAGAAGAAGAAGCAGATAGTTTTTGCAGGACACTCGTCTGGTGGTCCAGTGGCTATTCTGGCAACACTTTGGGCCTTAGAAAACTTTCCAACTCCAAAATCTTCCGATCGTATCCCTCCCATCTGCATCACTTTTGGTTCTCCTTTAGTTGGAAATCACATATTTTCTCATGCTACAAGGAGAGAAAATTGGGCTAACCACTTCTTCCATTTTGTGATGAGATATGACATAGTGCCAAGAATCCTCCTAGCCCCTCTATCTTCTTTTGACCAAAAATTTGAAACGGTTGCACAGCTCATAGATCCCAAAAGCAAATCATTCATGAGTGAATCGAGTCTTGGAAGAATCTCTTCAACTTCAGATTTCTACTTTGAAGTAATGTCAAATGCTGCAACTGTCACAAGACATGCTGCTTGTAGGCTAATGGGAACAACAGAAGCAACACTTGAAACTATTGCAAATTTTGTTCCTTTGAGTCCTTATAGACCCTTTGGAACTTACATTTTCTGCACTACAAGTGGCGATGAAGGAAAGCAAATTGTCATAAAAAACCCTGATGCAATTCTGCAGGTCATGTATTTCTGTGCTCAGTTAAGCTCTGAAGAAGAAACTGAGGAAGTTCCCCTTAAAAGCCTGCGACAACATTTTGAACTGGTAAAAAACTTTGGAAAGCAGAATGTTGTGTACTTAGACCAACTGGAAAATCTTCCTTTGTCTGAGCATACTACTTCAGGTGGCGACATTGCAGCCATTAACATAGCCTTAAATGAACTTGGCCTGGTATGCAACTTTTATTCTTCCCTATTTTTCTCAATTTTAAAGTTAAAACAGTTTTAAACATGCATTCAATCTTATATATTTGTGATGTCCTTTTACTTTATATACTCATATATGTTTAAATAGATCCTGATACAATATTAGTGACATATCTCATTTATTGATAACTTGATCAATAAAGAAAACAATAATGAATATGATAAAAACAATTAACCTTATGTCTAATAAATTACTACATGATCAGATATAATTGAATGGATGCATAAAACTATTTTACACTATCTCTATATGTCTGTTAAAGTCATTTTTCTCCTATCATACATAATACATGAGAAAACAAACATTGAAAAATATGTTATTGTACCATGCTGATATATGCATAACATTTTTATGCATTGGTTGGACACCTTGGAGGAAATGAAATTAATATACTATATATACTAAAAAGGCAAAATGATAAAACTCTGGCTAATTATGTATTTATATCTTAACCATTGAACATGAAAAAAATAACATGAAGAGTCTGTGATATTTATGAGATAATGAATTGATTGTAAATAATTTTTAGAGTACAAGAGCAAGACTATGCATTCAAGCAGCTGCAGCATTAGAGGAACGGAAAACGAACAACGAGAAAAGTATGCTACAAAAGATAGCCGCTGTGGAGGATAGGATGAAAGCACTGGACAGTTACAGAGAAACGCGGGGACATCAGAAAAAAGGTTATTACGATGCATTCAAGGATCAACTAGACCCGGAAGATTTCCAAGCAAATGTACAGAGGCTAGAACTTGCAGGAGTATGGGATGAGATAATCGAAAAGCTGTTAAACTATGAACTTCCAGAAGACTTAGAAGGGAACGAAGATTGGATTAAGATAGGAACGAAGTTTAGAAGACTAGTTGAGCCTTTGGATATTGCTAATTACTATAGACATTCAAGGAACCGTGATGGACGTGTTTATATGGCTAAAGGAGGAAGGCCAAAAAGGTATAGGTATACACAAAGATGGTTGGAACATTATGAGAAGAGGGATGAAGGTGGTTACTCAGAATCATGTTTATGGGCTGAAGTGGAGGATCTTTGTCATGATCCTGACAAGCCTTTTGATGATGTTAAGGAAAAGGTTGAGGCATTGGAGGAATTTATAAGCAAGTGGCATGAGAAAGATGAGGCTGATAAGGATGTGTTTAAGGATGTGTTTTTAGTGGATTCTACGTTTGTTAAGTGGTGGAAAAAATTACCAACAGACCATAAAGAACAATCATGCATTAGAAGTCTTGTTGAAGTGTGA

Protein sequence

>MS.gene022252.t1

MASSRGGSKIKELSAERIGKSFDASWKAHKKPERHYLLEKNPSEVIISFSASGDFKDWYSKTTFGETEIDLKLFRSLKSIGNNEAAKVNQFFLQRFKDILTKSSLEDEVERAMKKKKQIVFAGHSSGGPVAILATLWALENFPTPKSSDRIPPICITFGSPLVGNHIFSHATRRENWANHFFHFVMRYDIVPRILLAPLSSFDQKFETVAQLIDPKSKSFMSESSLGRISSTSDFYFEVMSNAATVTRHAACRLMGTTEATLETIANFVPLSPYRPFGTYIFCTTSGDEGKQIVIKNPDAILQVMYFCAQLSSEEETEEVPLKSLRQHFELVKNFGKQNVVYLDQLENLPLSEHTTSGGDIAAINIALNELGLSTRARLCIQAAAALEERKTNNEKSMLQKIAAVEDRMKALDSYRETRGHQKKGYYDAFKDQLDPEDFQANVQRLELAGVWDEIIEKLLNYELPEDLEGNEDWIKIGTKFRRLVEPLDIANYYRHSRNRDGRVYMAKGGRPKRYRYTQRWLEHYEKRDEGGYSESCLWAEVEDLCHDPDKPFDDVKEKVEALEEFISKWHEKDEADKDVFKDVFLVDSTFVKWWKKLPTDHKEQSCIRSLVEV