AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014545

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014545.t1 MTR_3g111620 95.600 250 11 0 1 250 1 250 3.41e-169 467
MS.gene014545.t1 MTR_1g021945 78.788 231 47 2 21 250 20 249 4.26e-129 365
MS.gene014545.t1 MTR_8g036215 56.410 234 97 3 13 245 8 237 2.83e-91 269
MS.gene014545.t1 MTR_6g079580 53.333 240 103 4 13 246 4 240 1.03e-88 263
MS.gene014545.t1 MTR_8g107140 57.407 216 87 3 33 246 33 245 4.88e-88 261
MS.gene014545.t1 MTR_4g073720 54.357 241 102 5 7 245 5 239 2.88e-86 260
MS.gene014545.t1 MTR_5g022350 52.734 256 106 6 1 250 1 247 1.40e-85 257
MS.gene014545.t1 MTR_8g075510 55.466 247 98 7 6 249 10 247 5.62e-85 253
MS.gene014545.t1 MTR_8g037890 52.569 253 113 6 1 249 1 250 5.17e-84 253
MS.gene014545.t1 MTR_8g075510 55.556 243 96 7 6 245 10 243 4.10e-83 251
MS.gene014545.t1 MTR_8g075550 55.895 229 92 5 29 249 30 257 6.78e-80 243
MS.gene014545.t1 MTR_1g025420 52.632 247 108 8 10 249 7 251 7.26e-78 238
MS.gene014545.t1 MTR_3g114030 55.310 226 95 6 27 247 7 231 9.83e-78 234
MS.gene014545.t1 MTR_1g025420 52.697 241 107 7 10 245 7 245 1.51e-77 235
MS.gene014545.t1 MTR_8g056820 50.407 246 116 5 9 250 8 251 3.48e-77 234
MS.gene014545.t1 MTR_5g022310 51.837 245 108 6 13 250 14 255 1.64e-76 232
MS.gene014545.t1 MTR_1g062590 51.899 237 109 5 13 246 8 242 2.72e-76 231
MS.gene014545.t1 MTR_5g022310 51.406 249 111 6 9 250 10 255 3.20e-76 233
MS.gene014545.t1 MTR_5g059200 48.988 247 116 4 1 245 1 239 3.52e-76 232
MS.gene014545.t1 MTR_7g102380 52.321 237 106 6 13 246 9 241 6.23e-76 230
MS.gene014545.t1 MTR_1g062660 49.590 244 118 5 7 247 2 243 4.10e-75 228
MS.gene014545.t1 MTR_1g062350 50.628 239 113 5 13 248 8 244 1.78e-74 226
MS.gene014545.t1 MTR_1g062340 51.064 235 110 5 17 248 12 244 7.12e-74 225
MS.gene014545.t1 MTR_4g073730 51.667 240 110 5 12 246 10 248 6.15e-73 224
MS.gene014545.t1 MTR_3g068015 48.214 224 113 3 25 246 26 248 6.60e-73 223
MS.gene014545.t1 MTR_1g062370 49.372 239 116 5 13 248 8 244 7.00e-73 223
MS.gene014545.t1 MTR_7g062610 47.556 225 116 2 23 246 19 242 8.15e-73 223
MS.gene014545.t1 MTR_4g073730 51.667 240 110 5 12 246 10 248 1.38e-72 224
MS.gene014545.t1 MTR_1g062630 50.420 238 113 5 13 247 8 243 3.47e-72 221
MS.gene014545.t1 MTR_2g067980 48.387 248 120 6 9 250 6 251 2.59e-71 236
MS.gene014545.t1 MTR_2g069660 49.580 238 116 4 12 246 7 243 2.61e-70 216
MS.gene014545.t1 MTR_6g009480 42.857 252 138 4 1 246 1 252 1.54e-69 215
MS.gene014545.t1 MTR_2g068030 49.776 223 102 7 29 245 25 243 3.08e-69 214
MS.gene014545.t1 MTR_2g068655 45.815 227 117 6 24 246 28 252 2.57e-61 195
MS.gene014545.t1 MTR_1g062690 44.958 238 104 4 13 248 8 220 3.95e-61 192
MS.gene014545.t1 MTR_4g063630 39.831 236 136 5 15 245 17 251 4.35e-56 180
MS.gene014545.t1 MTR_5g010635 44.292 219 102 7 29 246 26 225 5.69e-52 169
MS.gene014545.t1 MTR_5g010640 39.370 254 128 9 1 246 1 236 5.61e-51 166
MS.gene014545.t1 MTR_8g096900 40.084 237 119 8 12 246 33 248 3.41e-48 159
MS.gene014545.t1 MTR_8g089020 46.584 161 64 3 81 241 21 159 3.09e-44 147
MS.gene014545.t1 MTR_2g067990 43.363 226 92 10 29 248 29 224 4.14e-44 159
MS.gene014545.t1 MTR_5g022350 50.000 162 70 5 1 156 66 222 1.22e-43 147
MS.gene014545.t1 MTR_2g067970 44.149 188 94 8 69 249 2 185 5.99e-40 147
MS.gene014545.t1 MTR_5g023850 36.437 247 112 9 12 250 11 220 4.37e-39 135
MS.gene014545.t1 MTR_2g063150 32.500 240 150 5 12 242 12 248 5.50e-39 136
MS.gene014545.t1 MTR_1g062390 31.621 253 152 6 6 250 3 242 2.24e-30 113
MS.gene014545.t1 MTR_8g096910 43.382 136 66 4 12 146 9 134 4.55e-28 105
MS.gene014545.t1 MTR_7g076360 33.484 221 81 5 24 242 5 161 1.79e-27 103
MS.gene014545.t1 MTR_8g096920 45.185 135 63 4 14 146 6 131 3.64e-26 100
MS.gene014545.t1 MTR_3g081550 44.792 96 50 3 109 202 15 109 9.01e-13 63.5
MS.gene014545.t1 MTR_1g062640 35.374 147 85 6 22 166 8 146 1.10e-12 64.3
MS.gene014545.t1 MTR_5g068670 46.753 77 37 3 64 139 12 85 9.79e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014545.t1 AT1G75030 65.690 239 79 3 13 249 9 246 1.86e-112 323
MS.gene014545.t1 AT1G75050 66.807 238 73 4 14 247 9 244 1.61e-111 321
MS.gene014545.t1 AT1G75040 60.581 241 91 4 6 246 3 239 1.31e-103 300
MS.gene014545.t1 AT1G19320 60.241 249 92 5 1 245 1 246 1.15e-96 283
MS.gene014545.t1 AT1G73620 56.444 225 93 3 24 246 39 260 6.80e-89 264
MS.gene014545.t1 AT1G18250 55.556 225 95 3 24 246 18 239 6.21e-88 261
MS.gene014545.t1 AT4G38660 55.738 244 98 6 9 250 14 249 1.99e-87 263
MS.gene014545.t1 AT1G18250 54.185 227 99 3 22 246 17 240 2.74e-87 259
MS.gene014545.t1 AT4G24180 55.870 247 96 7 9 247 11 252 8.82e-86 256
MS.gene014545.t1 AT4G24180 55.600 250 98 7 9 250 11 255 1.38e-85 257
MS.gene014545.t1 AT4G24180 54.980 251 97 7 9 247 11 257 2.09e-85 255
MS.gene014545.t1 AT4G24180 54.724 254 99 7 9 250 11 260 3.01e-85 256
MS.gene014545.t1 AT4G38660 57.269 227 89 5 26 250 7 227 9.32e-85 256
MS.gene014545.t1 AT1G77700 51.899 237 99 4 16 245 43 271 6.71e-83 251
MS.gene014545.t1 AT1G77700 51.899 237 99 4 16 245 43 271 2.79e-82 249
MS.gene014545.t1 AT5G24620 52.610 249 110 4 6 246 3 251 1.10e-81 251
MS.gene014545.t1 AT5G24620 52.610 249 110 4 6 246 58 306 2.09e-81 252
MS.gene014545.t1 AT5G24620 52.610 249 110 4 6 246 79 327 2.88e-81 252
MS.gene014545.t1 AT1G77700 53.394 221 95 3 25 245 87 299 4.69e-81 247
MS.gene014545.t1 AT1G75800 53.252 246 106 7 12 250 9 252 2.97e-78 239
MS.gene014545.t1 AT2G17860 53.469 245 105 6 13 249 9 252 1.02e-77 235
MS.gene014545.t1 AT4G36010 54.506 233 96 5 24 247 20 251 6.99e-77 235
MS.gene014545.t1 AT4G36010 54.506 233 96 5 24 247 20 251 6.99e-77 235
MS.gene014545.t1 AT4G24180 54.978 231 91 7 9 231 11 236 1.28e-76 235
MS.gene014545.t1 AT4G24180 54.043 235 92 7 9 231 11 241 1.61e-76 235
MS.gene014545.t1 AT1G20030 53.540 226 97 6 29 247 5 229 9.34e-74 227
MS.gene014545.t1 AT1G20030 53.540 226 97 6 29 247 22 246 1.15e-73 227
MS.gene014545.t1 AT5G40020 44.578 249 136 2 1 247 1 249 1.84e-73 224
MS.gene014545.t1 AT4G38670 50.000 244 110 8 14 246 5 247 3.10e-70 217
MS.gene014545.t1 AT4G38670 50.000 244 110 8 14 246 5 247 3.10e-70 217
MS.gene014545.t1 AT4G38670 51.786 224 101 7 29 246 9 231 2.12e-68 212
MS.gene014545.t1 AT5G02140 45.607 239 127 3 13 249 7 244 9.79e-68 211
MS.gene014545.t1 AT5G02140 45.763 236 125 3 13 246 7 241 1.20e-67 209
MS.gene014545.t1 AT5G38280 46.559 247 121 8 10 246 5 250 2.27e-63 209
MS.gene014545.t1 AT5G38280 46.559 247 121 8 10 246 5 250 3.72e-63 209
MS.gene014545.t1 AT2G28790 42.400 250 137 6 1 245 1 248 2.90e-59 188
MS.gene014545.t1 AT2G28790 42.400 250 137 6 1 245 26 273 3.42e-59 189
MS.gene014545.t1 AT4G11650 42.437 238 116 7 13 249 9 226 6.38e-56 179
MS.gene014545.t1 AT4G18253 39.837 246 135 6 7 247 2 239 1.90e-54 176
MS.gene014545.t1 AT4G36000 57.333 150 55 4 102 250 1 142 1.14e-51 167
MS.gene014545.t1 AT4G36000 57.333 150 55 4 102 250 1 142 1.14e-51 167
MS.gene014545.t1 AT1G70250 41.126 231 121 7 29 250 147 371 3.84e-46 164
MS.gene014545.t1 AT4G18250 41.152 243 131 8 11 248 39 274 4.93e-46 163
MS.gene014545.t1 AT5G24620 54.167 120 49 2 133 246 15 134 8.23e-35 127
MS.gene014545.t1 AT2G24810 60.256 78 30 1 168 245 116 192 1.93e-25 99.4

Find 85 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGCTGGTCTGGACGTTTC+TGG 0.041189 3.3:+92181315 MS.gene014545:CDS
ATCTGGCCGGGAACACTTTC+CGG 0.214212 3.3:+92181218 MS.gene014545:CDS
CGCCGCACACGCACTCTTAC+AGG 0.259177 3.3:-92181642 None:intergenic
TCAAGCACTTGCACATGTTC+TGG 0.269659 3.3:+92181791 MS.gene014545:CDS
CGGAAAGGTGTTTGAGTTAG+TGG 0.339140 3.3:-92181025 None:intergenic
CTTTGCAGGTAATGTAGCTT+CGG 0.347218 3.3:+92181157 MS.gene014545:intron
AGGCTGGTCTGGACGTTTCT+GGG 0.353237 3.3:+92181316 MS.gene014545:CDS
ACTGCTCCAGCAGGCTGGTC+TGG 0.372462 3.3:+92181305 MS.gene014545:CDS
TCATTGTCCAGCGGAGTTGC+AGG 0.378054 3.3:+92181592 MS.gene014545:CDS
TTTGCAGGTAATGTAGCTTC+GGG 0.380079 3.3:+92181158 MS.gene014545:intron
AGACTTCTATGACGTGAGTT+TGG 0.392352 3.3:+92181481 MS.gene014545:CDS
ACTTCGACGGTGCTGGTAAC+GGG 0.395193 3.3:+92181354 MS.gene014545:CDS
AAGTAGTTCAGCACCGTTGC+CGG 0.396672 3.3:-92181237 None:intergenic
CCGTTGCCGGAAAGTGTTCC+CGG 0.398738 3.3:-92181224 None:intergenic
TTTACGATCGGAAGCGGGAA+TGG 0.433505 3.3:+92181452 MS.gene014545:CDS
GTAAACTCCGCCAACGTCAC+TGG 0.437210 3.3:-92181434 None:intergenic
GATGGTTACAATGTGGGGAT+AGG 0.440861 3.3:+92181506 MS.gene014545:CDS
CTGACAATCACCTGTTCCTC+TGG 0.440961 3.3:-92181540 None:intergenic
ACCGTTGCATTTCAATCCTC+CGG 0.443760 3.3:-92181399 None:intergenic
ATACAAGCAACCAGAGGAAC+AGG 0.461854 3.3:+92181530 MS.gene014545:CDS
ACCGTTGTAACAACACAATC+TGG 0.462686 3.3:+92181201 MS.gene014545:CDS
TTTGAATTCACTGCTCCAGC+AGG 0.465707 3.3:+92181296 MS.gene014545:CDS
GTGCTGAACTACTTGGTGAC+GGG 0.474840 3.3:+92181246 MS.gene014545:CDS
GAGTTGCAGGTAACAGAGGA+AGG 0.484221 3.3:+92181605 MS.gene014545:CDS
GGCTGCAACTTCGACGGTGC+TGG 0.484415 3.3:+92181347 MS.gene014545:CDS
AAACGTCCAGACCAGCCTGC+TGG 0.486502 3.3:-92181311 None:intergenic
ATGGTTACAATGTGGGGATA+GGG 0.488169 3.3:+92181507 MS.gene014545:CDS
AACTTCGACGGTGCTGGTAA+CGG 0.498037 3.3:+92181353 MS.gene014545:CDS
ATCCTTCTGCTGCTTCTACT+AGG 0.498370 3.3:+92181054 MS.gene014545:CDS
GGACGTTTCTGGGGTAGAAC+CGG 0.500730 3.3:+92181326 MS.gene014545:CDS
TCTGTTACCTGCAACTCCGC+TGG 0.503530 3.3:-92181599 None:intergenic
TTGGTGGATGGTTACAATGT+GGG 0.504388 3.3:+92181500 MS.gene014545:CDS
TGCTCCTCCAGTGACGTTGG+CGG 0.507952 3.3:+92181427 MS.gene014545:CDS
AATTCACTGCTCCAGCAGGC+TGG 0.511094 3.3:+92181300 MS.gene014545:CDS
CCGGGAACACTTTCCGGCAA+CGG 0.521195 3.3:+92181224 MS.gene014545:CDS
TTGTAACAACACAATCTGGC+CGG 0.526132 3.3:+92181205 MS.gene014545:CDS
GCGGAGTTTACGATCGGAAG+CGG 0.539163 3.3:+92181446 MS.gene014545:CDS
GGCAACGGTGCTGAACTACT+TGG 0.539389 3.3:+92181239 MS.gene014545:CDS
GTGAATTCAAAAGATGATCC+TGG 0.540487 3.3:-92181284 None:intergenic
CGGAGTTTACGATCGGAAGC+GGG 0.541171 3.3:+92181447 MS.gene014545:CDS
GCCAGATTGTGTTGTTACAA+CGG 0.555322 3.3:-92181202 None:intergenic
ACAGGTGATTGTCAGTATGC+AGG 0.556822 3.3:+92181548 MS.gene014545:CDS
TGTAACAACACAATCTGGCC+GGG 0.563673 3.3:+92181206 MS.gene014545:CDS
AACATCTCTGAGTACTGTGT+TGG 0.565049 3.3:-92181722 None:intergenic
CTTCTATGACGTGAGTTTGG+TGG 0.567400 3.3:+92181484 MS.gene014545:CDS
GGATTGAAATGCAACGGTGG+AGG 0.575754 3.3:+92181404 MS.gene014545:CDS
TGGTGGATGGTTACAATGTG+GGG 0.575782 3.3:+92181501 MS.gene014545:CDS
CTGTGGACTCGAATGTTCAC+CGG 0.577729 3.3:-92181690 None:intergenic
GGTAACGGGAATTGCATCAC+AGG 0.579922 3.3:+92181368 MS.gene014545:CDS
GTTGCAGGTAACAGAGGAAG+GGG 0.591850 3.3:+92181607 MS.gene014545:CDS
AGCAGCAGAAGGATGATGAA+CGG 0.593386 3.3:-92181045 None:intergenic
TTGAATGTGGTATGGCTAGG+AGG 0.593673 3.3:-92181849 None:intergenic
GGTGCTGAACTACTTGGTGA+CGG 0.595292 3.3:+92181245 MS.gene014545:CDS
TATGGCTAGGAGGAAGCAGT+TGG 0.600723 3.3:-92181839 None:intergenic
GGTTGTGTTGCGGATTTGAA+CGG 0.603815 3.3:+92181569 MS.gene014545:CDS
AGCACCGTCGAAGTTGCAGC+CGG 0.605393 3.3:-92181345 None:intergenic
ACCGGTGCAACAAAACTCCT+CGG 0.606971 3.3:-92181672 None:intergenic
AGCGGAGTTGCAGGTAACAG+AGG 0.608898 3.3:+92181601 MS.gene014545:CDS
TGTGTTGGACTGCAACTCTG+TGG 0.610848 3.3:-92181707 None:intergenic
AGGTGCTCCTCCAGTGACGT+TGG 0.611186 3.3:+92181424 MS.gene014545:CDS
TGCTGAACTACTTGGTGACG+GGG 0.611875 3.3:+92181247 MS.gene014545:CDS
ACCGGAGGATTGAAATGCAA+CGG 0.612318 3.3:+92181398 MS.gene014545:CDS
CACCTAGTAGAAGCAGCAGA+AGG 0.613519 3.3:-92181056 None:intergenic
TATGACGTGAGTTTGGTGGA+TGG 0.616012 3.3:+92181488 MS.gene014545:CDS
GGCTGGTCTGGACGTTTCTG+GGG 0.623771 3.3:+92181317 MS.gene014545:CDS
AGAACCGGCTGCAACTTCGA+CGG 0.626510 3.3:+92181341 MS.gene014545:CDS
TTTGGTGGATGGTTACAATG+TGG 0.629478 3.3:+92181499 MS.gene014545:CDS
ACGTTGGCGGAGTTTACGAT+CGG 0.633255 3.3:+92181440 MS.gene014545:CDS
TGCATCACAGGAGACTGCAC+CGG 0.636449 3.3:+92181380 MS.gene014545:CDS
TGCCTGTAAGAGTGCGTGTG+CGG 0.637848 3.3:+92181640 MS.gene014545:CDS
ATCACAGGAGACTGCACCGG+AGG 0.642936 3.3:+92181383 MS.gene014545:CDS
TAAGCATAACTGTATGCAGA+GGG 0.644508 3.3:-92181758 None:intergenic
AGTTGCAGGTAACAGAGGAA+GGG 0.644950 3.3:+92181606 MS.gene014545:CDS
CAGAAGGATGATGAACGGAA+AGG 0.647623 3.3:-92181040 None:intergenic
AACTCCGCCAACGTCACTGG+AGG 0.649133 3.3:-92181431 None:intergenic
TTGCAGGTAATGTAGCTTCG+GGG 0.669955 3.3:+92181159 MS.gene014545:intron
TCAGTATGCAGGTTGTGTTG+CGG 0.671374 3.3:+92181559 MS.gene014545:CDS
GCTGAACTACTTGGTGACGG+GGG 0.674143 3.3:+92181248 MS.gene014545:CDS
TTTGAACGGTCATTGTCCAG+CGG 0.681723 3.3:+92181583 MS.gene014545:CDS
GTGTGCGGCGTTTAATACCG+AGG 0.685026 3.3:+92181655 MS.gene014545:CDS
TTGCAGGTAACAGAGGAAGG+GGG 0.708103 3.3:+92181608 MS.gene014545:CDS
GGAGGATTGAAATGCAACGG+TGG 0.716120 3.3:+92181401 MS.gene014545:CDS
ATAAGCATAACTGTATGCAG+AGG 0.719851 3.3:-92181759 None:intergenic
ATAGGGATACAAGCAACCAG+AGG 0.737024 3.3:+92181524 MS.gene014545:CDS
AATTCAAAAGATGATCCTGG+CGG 0.756655 3.3:-92181281 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTACTTTACAAAAGACA+TGG - chr3.3:92181111-92181130 None:intergenic 20.0%
!! ACAAAAAGTGATAAGATAAT+CGG - chr3.3:92181819-92181838 None:intergenic 20.0%
!!! TTGTTTTTAAACTGCTAGTA+TGG + chr3.3:92181130-92181149 MS.gene014545:intron 25.0%
AATTCAAAAGATGATCCTGG+CGG - chr3.3:92181284-92181303 None:intergenic 35.0%
ATAAGCATAACTGTATGCAG+AGG - chr3.3:92181762-92181781 None:intergenic 35.0%
GTGAATTCAAAAGATGATCC+TGG - chr3.3:92181287-92181306 None:intergenic 35.0%
TAAGCATAACTGTATGCAGA+GGG - chr3.3:92181761-92181780 None:intergenic 35.0%
! GTTGTTACAACGGTTTTCTA+TGG - chr3.3:92181195-92181214 None:intergenic 35.0%
ACCGTTGTAACAACACAATC+TGG + chr3.3:92181201-92181220 MS.gene014545:CDS 40.0%
AGACTTCTATGACGTGAGTT+TGG + chr3.3:92181481-92181500 MS.gene014545:CDS 40.0%
ATGGTTACAATGTGGGGATA+GGG + chr3.3:92181507-92181526 MS.gene014545:CDS 40.0%
CTTTGCAGGTAATGTAGCTT+CGG + chr3.3:92181157-92181176 MS.gene014545:intron 40.0%
TTGTAACAACACAATCTGGC+CGG + chr3.3:92181205-92181224 MS.gene014545:CDS 40.0%
TTTGCAGGTAATGTAGCTTC+GGG + chr3.3:92181158-92181177 MS.gene014545:intron 40.0%
! AACATCTCTGAGTACTGTGT+TGG - chr3.3:92181725-92181744 None:intergenic 40.0%
! GCCAGATTGTGTTGTTACAA+CGG - chr3.3:92181205-92181224 None:intergenic 40.0%
! GCTAGTATGGTTTTCTTTGC+AGG + chr3.3:92181143-92181162 MS.gene014545:intron 40.0%
! TTGGTGGATGGTTACAATGT+GGG + chr3.3:92181500-92181519 MS.gene014545:CDS 40.0%
! TTTGGTGGATGGTTACAATG+TGG + chr3.3:92181499-92181518 MS.gene014545:CDS 40.0%
ACAGGTGATTGTCAGTATGC+AGG + chr3.3:92181548-92181567 MS.gene014545:CDS 45.0%
ACCGGAGGATTGAAATGCAA+CGG + chr3.3:92181398-92181417 MS.gene014545:CDS 45.0%
ACCGTTGCATTTCAATCCTC+CGG - chr3.3:92181402-92181421 None:intergenic 45.0%
AGCAGCAGAAGGATGATGAA+CGG - chr3.3:92181048-92181067 None:intergenic 45.0%
AGTTGCAGGTAACAGAGGAA+GGG + chr3.3:92181606-92181625 MS.gene014545:CDS 45.0%
ATACAAGCAACCAGAGGAAC+AGG + chr3.3:92181530-92181549 MS.gene014545:CDS 45.0%
ATAGGGATACAAGCAACCAG+AGG + chr3.3:92181524-92181543 MS.gene014545:CDS 45.0%
CAGAAGGATGATGAACGGAA+AGG - chr3.3:92181043-92181062 None:intergenic 45.0%
CTTCTATGACGTGAGTTTGG+TGG + chr3.3:92181484-92181503 MS.gene014545:CDS 45.0%
GATGGTTACAATGTGGGGAT+AGG + chr3.3:92181506-92181525 MS.gene014545:CDS 45.0%
GGTTGTGTTGCGGATTTGAA+CGG + chr3.3:92181569-92181588 MS.gene014545:CDS 45.0%
TCAAGCACTTGCACATGTTC+TGG + chr3.3:92181791-92181810 MS.gene014545:CDS 45.0%
TCAGTATGCAGGTTGTGTTG+CGG + chr3.3:92181559-92181578 MS.gene014545:CDS 45.0%
TGTAACAACACAATCTGGCC+GGG + chr3.3:92181206-92181225 MS.gene014545:CDS 45.0%
TTGCAGGTAATGTAGCTTCG+GGG + chr3.3:92181159-92181178 MS.gene014545:intron 45.0%
TTTGAACGGTCATTGTCCAG+CGG + chr3.3:92181583-92181602 MS.gene014545:CDS 45.0%
TTTGAATTCACTGCTCCAGC+AGG + chr3.3:92181296-92181315 MS.gene014545:CDS 45.0%
! ATCCTTCTGCTGCTTCTACT+AGG + chr3.3:92181054-92181073 MS.gene014545:CDS 45.0%
! TATGACGTGAGTTTGGTGGA+TGG + chr3.3:92181488-92181507 MS.gene014545:CDS 45.0%
! TGGTGGATGGTTACAATGTG+GGG + chr3.3:92181501-92181520 MS.gene014545:CDS 45.0%
!! CGGAAAGGTGTTTGAGTTAG+TGG - chr3.3:92181028-92181047 None:intergenic 45.0%
AAGTAGTTCAGCACCGTTGC+CGG - chr3.3:92181240-92181259 None:intergenic 50.0%
ACCGGTGCAACAAAACTCCT+CGG - chr3.3:92181675-92181694 None:intergenic 50.0%
ACGTTGGCGGAGTTTACGAT+CGG + chr3.3:92181440-92181459 MS.gene014545:CDS 50.0%
CACCTAGTAGAAGCAGCAGA+AGG - chr3.3:92181059-92181078 None:intergenic 50.0%
CTGACAATCACCTGTTCCTC+TGG - chr3.3:92181543-92181562 None:intergenic 50.0%
CTGTGGACTCGAATGTTCAC+CGG - chr3.3:92181693-92181712 None:intergenic 50.0%
GAGTTGCAGGTAACAGAGGA+AGG + chr3.3:92181605-92181624 MS.gene014545:CDS 50.0%
GGAGGATTGAAATGCAACGG+TGG + chr3.3:92181401-92181420 MS.gene014545:CDS 50.0%
GGATTGAAATGCAACGGTGG+AGG + chr3.3:92181404-92181423 MS.gene014545:CDS 50.0%
GTTGCAGGTAACAGAGGAAG+GGG + chr3.3:92181607-92181626 MS.gene014545:CDS 50.0%
TGTGTTGGACTGCAACTCTG+TGG - chr3.3:92181710-92181729 None:intergenic 50.0%
TTGCAGGTAACAGAGGAAGG+GGG + chr3.3:92181608-92181627 MS.gene014545:CDS 50.0%
TTTACGATCGGAAGCGGGAA+TGG + chr3.3:92181452-92181471 MS.gene014545:CDS 50.0%
! GGTGCTGAACTACTTGGTGA+CGG + chr3.3:92181245-92181264 MS.gene014545:CDS 50.0%
! GTGCTGAACTACTTGGTGAC+GGG + chr3.3:92181246-92181265 MS.gene014545:CDS 50.0%
!! AACTTCGACGGTGCTGGTAA+CGG + chr3.3:92181353-92181372 MS.gene014545:CDS 50.0%
!! GGTAACGGGAATTGCATCAC+AGG + chr3.3:92181368-92181387 MS.gene014545:CDS 50.0%
!! TGCTGAACTACTTGGTGACG+GGG + chr3.3:92181247-92181266 MS.gene014545:CDS 50.0%
!!! ACCGAGGAGTTTTGTTGCAC+CGG + chr3.3:92181671-92181690 MS.gene014545:CDS 50.0%
AATTCACTGCTCCAGCAGGC+TGG + chr3.3:92181300-92181319 MS.gene014545:CDS 55.0%
AGAACCGGCTGCAACTTCGA+CGG + chr3.3:92181341-92181360 MS.gene014545:CDS 55.0%
AGCGGAGTTGCAGGTAACAG+AGG + chr3.3:92181601-92181620 MS.gene014545:CDS 55.0%
ATCTGGCCGGGAACACTTTC+CGG + chr3.3:92181218-92181237 MS.gene014545:CDS 55.0%
CGGAGTTTACGATCGGAAGC+GGG + chr3.3:92181447-92181466 MS.gene014545:CDS 55.0%
GCGGAGTTTACGATCGGAAG+CGG + chr3.3:92181446-92181465 MS.gene014545:CDS 55.0%
GGTAACAGAGGAAGGGGGTT+CGG + chr3.3:92181613-92181632 MS.gene014545:CDS 55.0%
GTAAACTCCGCCAACGTCAC+TGG - chr3.3:92181437-92181456 None:intergenic 55.0%
GTGTGCGGCGTTTAATACCG+AGG + chr3.3:92181655-92181674 MS.gene014545:CDS 55.0%
TCATTGTCCAGCGGAGTTGC+AGG + chr3.3:92181592-92181611 MS.gene014545:CDS 55.0%
TCTGTTACCTGCAACTCCGC+TGG - chr3.3:92181602-92181621 None:intergenic 55.0%
TGCATCACAGGAGACTGCAC+CGG + chr3.3:92181380-92181399 MS.gene014545:CDS 55.0%
! GGCAACGGTGCTGAACTACT+TGG + chr3.3:92181239-92181258 MS.gene014545:CDS 55.0%
! TGCCTGTAAGAGTGCGTGTG+CGG + chr3.3:92181640-92181659 MS.gene014545:CDS 55.0%
!! ACTTCGACGGTGCTGGTAAC+GGG + chr3.3:92181354-92181373 MS.gene014545:CDS 55.0%
!! AGGCTGGTCTGGACGTTTCT+GGG + chr3.3:92181316-92181335 MS.gene014545:CDS 55.0%
!! GCTGAACTACTTGGTGACGG+GGG + chr3.3:92181248-92181267 MS.gene014545:CDS 55.0%
!! GGACGTTTCTGGGGTAGAAC+CGG + chr3.3:92181326-92181345 MS.gene014545:CDS 55.0%
AAACGTCCAGACCAGCCTGC+TGG - chr3.3:92181314-92181333 None:intergenic 60.0%
AACAGAGGAAGGGGGTTCGG+TGG + chr3.3:92181616-92181635 MS.gene014545:CDS 60.0%
AACTCCGCCAACGTCACTGG+AGG - chr3.3:92181434-92181453 None:intergenic 60.0%
AGCACCGTCGAAGTTGCAGC+CGG - chr3.3:92181348-92181367 None:intergenic 60.0%
AGGTGCTCCTCCAGTGACGT+TGG + chr3.3:92181424-92181443 MS.gene014545:CDS 60.0%
ATCACAGGAGACTGCACCGG+AGG + chr3.3:92181383-92181402 MS.gene014545:CDS 60.0%
CCGGGAACACTTTCCGGCAA+CGG + chr3.3:92181224-92181243 MS.gene014545:CDS 60.0%
TGCTCCTCCAGTGACGTTGG+CGG + chr3.3:92181427-92181446 MS.gene014545:CDS 60.0%
!! CAGGCTGGTCTGGACGTTTC+TGG + chr3.3:92181315-92181334 MS.gene014545:CDS 60.0%
!! CCGTTGCCGGAAAGTGTTCC+CGG - chr3.3:92181227-92181246 None:intergenic 60.0%
!! GGCTGGTCTGGACGTTTCTG+GGG + chr3.3:92181317-92181336 MS.gene014545:CDS 60.0%
CGCCGCACACGCACTCTTAC+AGG - chr3.3:92181645-92181664 None:intergenic 65.0%
GGCTGCAACTTCGACGGTGC+TGG + chr3.3:92181347-92181366 MS.gene014545:CDS 65.0%
! ACTGCTCCAGCAGGCTGGTC+TGG + chr3.3:92181305-92181324 MS.gene014545:CDS 65.0%
! GGGGGATTTTCTCTGCCGCC+AGG + chr3.3:92181266-92181285 MS.gene014545:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 92181015 92181856 92181015 ID=MS.gene014545
chr3.3 mRNA 92181015 92181856 92181015 ID=MS.gene014545.t1;Parent=MS.gene014545
chr3.3 exon 92181015 92181075 92181015 ID=MS.gene014545.t1.exon1;Parent=MS.gene014545.t1
chr3.3 CDS 92181015 92181075 92181015 ID=cds.MS.gene014545.t1;Parent=MS.gene014545.t1
chr3.3 exon 92181165 92181856 92181165 ID=MS.gene014545.t1.exon2;Parent=MS.gene014545.t1
chr3.3 CDS 92181165 92181856 92181165 ID=cds.MS.gene014545.t1;Parent=MS.gene014545.t1
Gene Sequence

>MS.gene014545

ATGGCTCTTACCACTAACTCAAACACCTTTCCGTTCATCATCCTTCTGCTGCTTCTACTAGGTGAACAAGAAATTCAACACTGATTTTACGTTCCATGTCTTTTGTAAAGTAATTTTGTTTTTAAACTGCTAGTATGGTTTTCTTTGCAGGTAATGTAGCTTCGGGGACAATGTTTACCATAGAAAACCGTTGTAACAACACAATCTGGCCGGGAACACTTTCCGGCAACGGTGCTGAACTACTTGGTGACGGGGGATTTTCTCTGCCGCCAGGATCATCTTTTGAATTCACTGCTCCAGCAGGCTGGTCTGGACGTTTCTGGGGTAGAACCGGCTGCAACTTCGACGGTGCTGGTAACGGGAATTGCATCACAGGAGACTGCACCGGAGGATTGAAATGCAACGGTGGAGGTGCTCCTCCAGTGACGTTGGCGGAGTTTACGATCGGAAGCGGGAATGGAGATAAAGACTTCTATGACGTGAGTTTGGTGGATGGTTACAATGTGGGGATAGGGATACAAGCAACCAGAGGAACAGGTGATTGTCAGTATGCAGGTTGTGTTGCGGATTTGAACGGTCATTGTCCAGCGGAGTTGCAGGTAACAGAGGAAGGGGGTTCGGTGGTTGCCTGTAAGAGTGCGTGTGCGGCGTTTAATACCGAGGAGTTTTGTTGCACCGGTGAACATTCGAGTCCACAGAGTTGCAGTCCAACACAGTACTCAGAGATGTTCAAGACTGCGTGTCCCTCTGCATACAGTTATGCTTATGACGATGCTTCAAGCACTTGCACATGTTCTGGATCCGATTATCTTATCACTTTTTGTCCAACTGCTTCCTCCTAG
Protein sequence

>MS.gene014545.t1

MALTTNSNTFPFIILLLLLLGNVASGTMFTIENRCNNTIWPGTLSGNGAELLGDGGFSLPPGSSFEFTAPAGWSGRFWGRTGCNFDGAGNGNCITGDCTGGLKCNGGGAPPVTLAEFTIGSGNGDKDFYDVSLVDGYNVGIGIQATRGTGDCQYAGCVADLNGHCPAELQVTEEGGSVVACKSACAAFNTEEFCCTGEHSSPQSCSPTQYSEMFKTACPSAYSYAYDDASSTCTCSGSDYLITFCPTASS