Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38392.t1 | XP_013461062.1 | 74.4 | 503 | 127 | 2 | 1 | 502 | 117 | 618 | 8.00E-212 | 746.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38392.t1 | Q9SU72 | 38.6 | 533 | 263 | 9 | 1 | 498 | 111 | 614 | 1.2e-91 | 338.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38392.t1 | A0A072V056 | 74.4 | 503 | 127 | 2 | 1 | 502 | 117 | 618 | 5.8e-212 | 746.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38392 | MS.gene38399 | PPI |
| MS.gene38392 | MS.gene38408 | PPI |
| MS.gene38392 | MS.gene062716 | PPI |
| MS.gene38392 | MS.gene25909 | PPI |
| MS.gene42360 | MS.gene38392 | PPI |
| MS.gene38414 | MS.gene38392 | PPI |
| MS.gene38392 | MS.gene24315 | PPI |
| MS.gene38404 | MS.gene38392 | PPI |
| MS.gene38392 | MS.gene014545 | PPI |
| MS.gene25879 | MS.gene38392 | PPI |
| MS.gene38392 | MS.gene022225 | PPI |
| MS.gene38392 | MS.gene26931 | PPI |
| MS.gene38392 | MS.gene69123 | PPI |
| MS.gene38392 | MS.gene27345 | PPI |
| MS.gene38392 | MS.gene074397 | PPI |
| MS.gene38392 | MS.gene70582 | PPI |
| MS.gene38392 | MS.gene38414 | PPI |
| MS.gene38392 | MS.gene044112 | PPI |
| MS.gene38392 | MS.gene022252 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38392.t1 | MTR_3g078633 | 77.336 | 503 | 112 | 2 | 1 | 502 | 117 | 618 | 0.0 | 813 |
| MS.gene38392.t1 | MTR_3g078633 | 77.336 | 503 | 112 | 2 | 1 | 502 | 45 | 546 | 0.0 | 811 |
| MS.gene38392.t1 | MTR_3g079340 | 54.510 | 510 | 205 | 9 | 5 | 502 | 122 | 616 | 0.0 | 538 |
| MS.gene38392.t1 | MTR_3g081450 | 81.818 | 99 | 18 | 0 | 391 | 489 | 32 | 130 | 4.69e-53 | 177 |
| MS.gene38392.t1 | MTR_8g494200 | 26.834 | 518 | 303 | 19 | 5 | 486 | 130 | 607 | 2.75e-45 | 168 |
| MS.gene38392.t1 | MTR_3g467360 | 25.634 | 355 | 208 | 13 | 161 | 483 | 209 | 539 | 1.22e-23 | 104 |
| MS.gene38392.t1 | MTR_3g467360 | 25.634 | 355 | 208 | 13 | 161 | 483 | 215 | 545 | 1.27e-23 | 104 |
| MS.gene38392.t1 | MTR_0095s0020 | 27.059 | 340 | 190 | 14 | 5 | 326 | 155 | 454 | 1.41e-22 | 101 |
| MS.gene38392.t1 | MTR_6g008015 | 25.208 | 361 | 209 | 14 | 163 | 488 | 213 | 547 | 9.54e-21 | 95.9 |
| MS.gene38392.t1 | MTR_6g007985 | 25.208 | 361 | 209 | 14 | 163 | 488 | 136 | 470 | 1.12e-20 | 95.5 |
| MS.gene38392.t1 | MTR_6g007975 | 24.033 | 362 | 203 | 14 | 163 | 484 | 213 | 542 | 2.19e-19 | 91.7 |
| MS.gene38392.t1 | MTR_6g008055 | 24.931 | 361 | 199 | 16 | 163 | 484 | 213 | 540 | 8.04e-18 | 87.0 |
| MS.gene38392.t1 | MTR_6g007980 | 24.370 | 357 | 210 | 13 | 161 | 483 | 209 | 539 | 7.10e-17 | 84.0 |
| MS.gene38392.t1 | MTR_6g007980 | 24.581 | 358 | 209 | 13 | 161 | 483 | 209 | 540 | 9.12e-17 | 83.6 |
| MS.gene38392.t1 | MTR_6g007980 | 24.513 | 359 | 209 | 13 | 161 | 483 | 209 | 541 | 9.81e-17 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38392.t1 | AT3G48090 | 40.789 | 532 | 251 | 9 | 4 | 500 | 6 | 508 | 5.06e-125 | 375 |
| MS.gene38392.t1 | AT3G48090 | 40.789 | 532 | 251 | 9 | 4 | 500 | 114 | 616 | 1.10e-123 | 375 |
| MS.gene38392.t1 | AT3G48080 | 39.962 | 523 | 260 | 11 | 1 | 491 | 111 | 611 | 1.65e-120 | 367 |
| MS.gene38392.t1 | AT3G52430 | 24.242 | 363 | 217 | 12 | 153 | 482 | 175 | 512 | 8.11e-23 | 102 |
| MS.gene38392.t1 | AT5G14930 | 28.959 | 221 | 126 | 8 | 290 | 484 | 293 | 508 | 4.51e-16 | 81.3 |
Find 110 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCCCTTCAAATTCTTC+TGG | 0.223579 | 3.4:-64234783 | None:intergenic |
| GTCATTTAAAGCTGTGTTAA+TGG | 0.225012 | 3.4:-64233986 | None:intergenic |
| TGGATACCGCCATGAGATTT+TGG | 0.228582 | 3.4:-64233319 | None:intergenic |
| CATCCCCAATGTGTTACTTT+TGG | 0.245116 | 3.4:+64233340 | MS.gene38392:CDS |
| GTTATTCGGAATCATGCTTT+TGG | 0.254796 | 3.4:+64234985 | MS.gene38392:CDS |
| AATATGTGATCTCCTATTAA+AGG | 0.264992 | 3.4:-64233367 | None:intergenic |
| GGCTAGAACTTGCAGGAGTA+TGG | 0.273354 | 3.4:+64234724 | MS.gene38392:CDS |
| TGGTGGACCAGTGGCAATTC+TGG | 0.279377 | 3.4:+64233264 | MS.gene38392:CDS |
| CTCGTTAAAGATTTGTCTTT+AGG | 0.287937 | 3.4:-64233529 | None:intergenic |
| CCGTGATGGACGTGTTTATA+TGG | 0.287982 | 3.4:+64234887 | MS.gene38392:CDS |
| GAGAGGAGAAGGAGGTTATT+CGG | 0.313839 | 3.4:+64234971 | MS.gene38392:CDS |
| TGGCAATTCTGGCAACCCTT+TGG | 0.317237 | 3.4:+64233275 | MS.gene38392:CDS |
| AAGGGTCTATAAGGACTAAA+AGG | 0.332391 | 3.4:-64233697 | None:intergenic |
| GGCAATTCTGGCAACCCTTT+GGG | 0.345081 | 3.4:+64233276 | MS.gene38392:CDS |
| TGTCATATCTCATCACAAAA+TGG | 0.352184 | 3.4:-64233432 | None:intergenic |
| GCATGCTGCTTGTAGGCTAA+TGG | 0.361589 | 3.4:+64233633 | MS.gene38392:CDS |
| AGTGGAGCAAGGAGGATTCT+TGG | 0.365623 | 3.4:-64233460 | None:intergenic |
| CGTCCACAGAGCGTATCTTT+TGG | 0.380680 | 3.4:-64234587 | None:intergenic |
| TTTAGTCCTTATAGACCCTT+TGG | 0.382405 | 3.4:+64233700 | MS.gene38392:CDS |
| TAGAAGACTAGTTGAGCCTT+TGG | 0.383000 | 3.4:+64234833 | MS.gene38392:CDS |
| CTGCACCAACATTTAAGTTA+TGG | 0.385595 | 3.4:+64233862 | MS.gene38392:CDS |
| GATTCTTCCCTATGCTGTAT+TGG | 0.390982 | 3.4:-64235173 | None:intergenic |
| TTGTCTGAGCATACTACTTC+AGG | 0.393030 | 3.4:+64233949 | MS.gene38392:CDS |
| TAAGTTCCAAAGGGTCTATA+AGG | 0.394319 | 3.4:-64233706 | None:intergenic |
| AAGAAAGAATGGGTTGAGAT+AGG | 0.400022 | 3.4:+64234801 | MS.gene38392:CDS |
| CATGCTGCTTGTAGGCTAAT+GGG | 0.400935 | 3.4:+64233634 | MS.gene38392:CDS |
| ATGCTACAAGGAGAGAAAAT+TGG | 0.407091 | 3.4:+64233395 | MS.gene38392:CDS |
| TCAAGCAGCAGCAGCATTAG+AGG | 0.410513 | 3.4:+64234533 | MS.gene38392:CDS |
| TTAAGTTATGGCACTGAACT+AGG | 0.410886 | 3.4:+64233874 | MS.gene38392:CDS |
| TCACAAGGCATGCTGCTTGT+AGG | 0.417204 | 3.4:+64233626 | MS.gene38392:CDS |
| CAGAAGCAAATAGTGTTTGC+AGG | 0.421391 | 3.4:+64233232 | MS.gene38392:CDS |
| GTGAGCAGGCTAGAACTTGC+AGG | 0.421924 | 3.4:+64234717 | MS.gene38392:CDS |
| GTGTTTGCAGGGCACTCATC+TGG | 0.428673 | 3.4:+64233244 | MS.gene38392:CDS |
| CACATTTGCTTTGAAATCAT+CGG | 0.443023 | 3.4:-64234697 | None:intergenic |
| TCTGGCAACCCTTTGGGCCA+TGG | 0.444635 | 3.4:+64233282 | MS.gene38392:CDS |
| CTTCGAAGATGTTAAGGATA+GGG | 0.449060 | 3.4:+64235046 | MS.gene38392:CDS |
| ATGACCTGCAGAATTGCATC+AGG | 0.450270 | 3.4:-64233781 | None:intergenic |
| AGAACCAAAAGTAACACATT+GGG | 0.450634 | 3.4:-64233344 | None:intergenic |
| AAGGAACAACGAGAAAACTA+TGG | 0.450912 | 3.4:+64234563 | MS.gene38392:CDS |
| AATTTGAAGGGAAGAAAGAA+TGG | 0.451649 | 3.4:+64234790 | MS.gene38392:CDS |
| TGGAGTAAGAATAGTAAAGT+TGG | 0.456690 | 3.4:+64235098 | MS.gene38392:CDS |
| AAATCTTGAAGCTGAATGTT+GGG | 0.458634 | 3.4:+64233899 | MS.gene38392:CDS |
| TGGAGTTAGGTAGGTTTCCA+TGG | 0.460618 | 3.4:-64233299 | None:intergenic |
| TAGAGGAACAGATAAGTGAT+TGG | 0.460680 | 3.4:+64235078 | MS.gene38392:CDS |
| CAAATTACTATAGACATTCA+AGG | 0.461160 | 3.4:+64234862 | MS.gene38392:CDS |
| TAAGAATAGTAAAGTTGGTA+AGG | 0.475935 | 3.4:+64235103 | MS.gene38392:CDS |
| AAAATCTTGAAGCTGAATGT+TGG | 0.480384 | 3.4:+64233898 | MS.gene38392:CDS |
| GAAGTAGTATGCTCAGACAA+TGG | 0.496499 | 3.4:-64233946 | None:intergenic |
| GAACTTCCAGAAGAATTTGA+AGG | 0.496758 | 3.4:+64234777 | MS.gene38392:CDS |
| GTAGGTTTCCATGGCCCAAA+GGG | 0.497022 | 3.4:-64233290 | None:intergenic |
| AAAGTCCTTCGAAGATGTTA+AGG | 0.497847 | 3.4:+64235040 | MS.gene38392:CDS |
| AACACAGCTTTAAATGACCT+TGG | 0.498363 | 3.4:+64233991 | MS.gene38392:CDS |
| CCTTCGAAGATGTTAAGGAT+AGG | 0.505414 | 3.4:+64235045 | MS.gene38392:CDS |
| AGGTTACTACGATGCATTCA+AGG | 0.506073 | 3.4:+64234662 | MS.gene38392:CDS |
| TACATCTTCTGCACTACAAG+TGG | 0.509213 | 3.4:+64233727 | MS.gene38392:CDS |
| CAGCATTAGAGGAACGGAAA+AGG | 0.510218 | 3.4:+64234544 | MS.gene38392:CDS |
| CAGTGCCATAACTTAAATGT+TGG | 0.514185 | 3.4:-64233867 | None:intergenic |
| AACACTACCAATACAGCATA+GGG | 0.521717 | 3.4:+64235166 | MS.gene38392:CDS |
| AGCTTTAAATGACCTTGGCC+TGG | 0.523885 | 3.4:+64233996 | MS.gene38392:CDS |
| CAGGTATACACAAAGATGGT+TGG | 0.524361 | 3.4:+64234935 | MS.gene38392:CDS |
| ACTCATCTCGGAAAAGCCAC+TGG | 0.530829 | 3.4:+64233559 | MS.gene38392:CDS |
| CATGCTGATAAGAGAGGAGA+AGG | 0.533278 | 3.4:+64234960 | MS.gene38392:CDS |
| GCTAGAACTTGCAGGAGTAT+GGG | 0.533503 | 3.4:+64234725 | MS.gene38392:CDS |
| GCAGAAGATGTAAGTTCCAA+AGG | 0.536622 | 3.4:-64233716 | None:intergenic |
| AAACCCTGATGCAATTCTGC+AGG | 0.537767 | 3.4:+64233777 | MS.gene38392:CDS |
| TTCAAATCGTTGGTCAAAAG+AGG | 0.538850 | 3.4:-64233485 | None:intergenic |
| ATTTGAAGGGAAGAAAGAAT+GGG | 0.545051 | 3.4:+64234791 | MS.gene38392:CDS |
| GTGAAACTGCTTCAAATCGT+TGG | 0.551386 | 3.4:-64233495 | None:intergenic |
| TCATCACAAAATGGAAGAAG+TGG | 0.551943 | 3.4:-64233423 | None:intergenic |
| AGATACGCTCTGTGGACGAT+AGG | 0.552326 | 3.4:+64234592 | MS.gene38392:CDS |
| AACTTCCAGAAGAATTTGAA+GGG | 0.556815 | 3.4:+64234778 | MS.gene38392:CDS |
| GATACAGGTATACACAAAGA+TGG | 0.557227 | 3.4:+64234931 | MS.gene38392:CDS |
| AAACACTACCAATACAGCAT+AGG | 0.558238 | 3.4:+64235165 | MS.gene38392:CDS |
| ACGAGCAAATCGACTCATCT+CGG | 0.558539 | 3.4:+64233547 | MS.gene38392:CDS |
| ATTTCAAAGCAAATGTGAGC+AGG | 0.560036 | 3.4:+64234703 | MS.gene38392:CDS |
| CAGCAGTTACAGAGAAATGA+GGG | 0.565648 | 3.4:+64234626 | MS.gene38392:CDS |
| GAGAACCAAAAGTAACACAT+TGG | 0.565808 | 3.4:-64233345 | None:intergenic |
| CAAAAGTAACACATTGGGGA+TGG | 0.570292 | 3.4:-64233339 | None:intergenic |
| GGTAGGTTTCCATGGCCCAA+AGG | 0.576083 | 3.4:-64233291 | None:intergenic |
| CAGAAGATGTAAGTTCCAAA+GGG | 0.580677 | 3.4:-64233715 | None:intergenic |
| GCTGATAAGAGAGGAGAAGG+AGG | 0.581639 | 3.4:+64234963 | MS.gene38392:CDS |
| TTTGCAGGGCACTCATCTGG+TGG | 0.585914 | 3.4:+64233247 | MS.gene38392:CDS |
| CCTATCCTTAACATCTTCGA+AGG | 0.587211 | 3.4:-64235045 | None:intergenic |
| AGAAGCAAATAGTGTTTGCA+GGG | 0.594581 | 3.4:+64233233 | MS.gene38392:CDS |
| TCAGCAGTTACAGAGAAATG+AGG | 0.597030 | 3.4:+64234625 | MS.gene38392:CDS |
| AATGTTTACTTACCAGGCCA+AGG | 0.598222 | 3.4:-64234008 | None:intergenic |
| CAGCAGCAGCATTAGAGGAA+CGG | 0.598954 | 3.4:+64234538 | MS.gene38392:CDS |
| CGTGTTTATATGGCTAAAGG+TGG | 0.606548 | 3.4:+64234897 | MS.gene38392:CDS |
| CAAAAGAGGAGAGTGGAGCA+AGG | 0.609151 | 3.4:-64233471 | None:intergenic |
| TACCTAACTCCAAAATCTCA+TGG | 0.613362 | 3.4:+64233310 | MS.gene38392:CDS |
| AGGGTTGCCAGAATTGCCAC+TGG | 0.615205 | 3.4:-64233271 | None:intergenic |
| GCACTCATCTGGTGGACCAG+TGG | 0.616635 | 3.4:+64233255 | MS.gene38392:CDS |
| TAGTAATTTGCAATATCCAA+AGG | 0.619711 | 3.4:-64234849 | None:intergenic |
| GGACGTGTTTATATGGCTAA+AGG | 0.620483 | 3.4:+64234894 | MS.gene38392:CDS |
| CAAATGCTGCAACTGTCACA+AGG | 0.620723 | 3.4:+64233611 | MS.gene38392:CDS |
| TTTATATGGCTAAAGGTGGA+AGG | 0.627178 | 3.4:+64234901 | MS.gene38392:CDS |
| CCATATAAACACGTCCATCA+CGG | 0.630887 | 3.4:-64234887 | None:intergenic |
| GTAGAAATCTGAAGTTCCAG+TGG | 0.638315 | 3.4:-64233575 | None:intergenic |
| AGACATTCAAGGAACCGTGA+TGG | 0.644212 | 3.4:+64234873 | MS.gene38392:CDS |
| CGTTGGTCAAAAGAGGAGAG+TGG | 0.653840 | 3.4:-64233478 | None:intergenic |
| TTGGAACATGCTGATAAGAG+AGG | 0.656972 | 3.4:+64234954 | MS.gene38392:CDS |
| GAACCAAAAGTAACACATTG+GGG | 0.672795 | 3.4:-64233343 | None:intergenic |
| TGACCTGCAGAATTGCATCA+GGG | 0.673677 | 3.4:-64233780 | None:intergenic |
| TAGGCTAATGGGAACAACGG+CGG | 0.682497 | 3.4:+64233645 | MS.gene38392:CDS |
| TCTGAGCATACTACTTCAGG+AGG | 0.698901 | 3.4:+64233952 | MS.gene38392:CDS |
| AAGAGGAGAGTGGAGCAAGG+AGG | 0.703415 | 3.4:-64233468 | None:intergenic |
| GGACCAAAAGATACGCTCTG+TGG | 0.707399 | 3.4:+64234584 | MS.gene38392:CDS |
| TTGTAGGCTAATGGGAACAA+CGG | 0.746819 | 3.4:+64233642 | MS.gene38392:CDS |
| AGCAGTTACAGAGAAATGAG+GGG | 0.764549 | 3.4:+64234627 | MS.gene38392:CDS |
| CTAACTCCAAAATCTCATGG+CGG | 0.765393 | 3.4:+64233313 | MS.gene38392:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTACTCTTTTTTTTTAA+AGG | + | chr3.4:64234387-64234406 | MS.gene38392:intron | 10.0% |
| !! | ACACAAAAATTAAATGTTTA+AGG | - | chr3.4:64234158-64234177 | None:intergenic | 15.0% |
| !!! | TAATACTTTTATGTATTAGT+TGG | + | chr3.4:64234261-64234280 | MS.gene38392:intron | 15.0% |
| !!! | TTAAATGTTTAAGGTTTTTT+AGG | - | chr3.4:64234149-64234168 | None:intergenic | 15.0% |
| !!! | AACATTTTTATCCTTATCTA+TGG | + | chr3.4:64234025-64234044 | MS.gene38392:intron | 20.0% |
| !!! | GATTTATTTAATTTGCTTCT+AGG | - | chr3.4:64234294-64234313 | None:intergenic | 20.0% |
| !!! | TTTTTTAAAGGAAGAGAAAA+TGG | + | chr3.4:64234399-64234418 | MS.gene38392:intron | 20.0% |
| ! | AATATGTGATCTCCTATTAA+AGG | - | chr3.4:64233370-64233389 | None:intergenic | 25.0% |
| ! | CAAATTACTATAGACATTCA+AGG | + | chr3.4:64234862-64234881 | MS.gene38392:CDS | 25.0% |
| ! | GATAAAAATGTTTACTTACC+AGG | - | chr3.4:64234017-64234036 | None:intergenic | 25.0% |
| !! | AATAATCACATTGATTGACT+TGG | + | chr3.4:64234081-64234100 | MS.gene38392:intron | 25.0% |
| !! | TAGTAATTTGCAATATCCAA+AGG | - | chr3.4:64234852-64234871 | None:intergenic | 25.0% |
| !!! | ACAATGGAATATTTTCTAGT+TGG | - | chr3.4:64233933-64233952 | None:intergenic | 25.0% |
| !!! | TAAGAATAGTAAAGTTGGTA+AGG | + | chr3.4:64235103-64235122 | MS.gene38392:CDS | 25.0% |
| !!! | TTTAATTTGCTTCTAGGTTT+AGG | - | chr3.4:64234288-64234307 | None:intergenic | 25.0% |
| AAAATCTTGAAGCTGAATGT+TGG | + | chr3.4:64233898-64233917 | MS.gene38392:CDS | 30.0% | |
| AAACACAAAAGCCATAGATA+AGG | - | chr3.4:64234039-64234058 | None:intergenic | 30.0% | |
| AAATCTTGAAGCTGAATGTT+GGG | + | chr3.4:64233899-64233918 | MS.gene38392:CDS | 30.0% | |
| AACTTCCAGAAGAATTTGAA+GGG | + | chr3.4:64234778-64234797 | MS.gene38392:CDS | 30.0% | |
| AATTTGAAGGGAAGAAAGAA+TGG | + | chr3.4:64234790-64234809 | MS.gene38392:CDS | 30.0% | |
| AGAACCAAAAGTAACACATT+GGG | - | chr3.4:64233347-64233366 | None:intergenic | 30.0% | |
| AGCTAAAGCTCTATTTAGAA+TGG | - | chr3.4:64234319-64234338 | None:intergenic | 30.0% | |
| ATTTGAAGGGAAGAAAGAAT+GGG | + | chr3.4:64234791-64234810 | MS.gene38392:CDS | 30.0% | |
| CTCGTTAAAGATTTGTCTTT+AGG | - | chr3.4:64233532-64233551 | None:intergenic | 30.0% | |
| TGGAGTAAGAATAGTAAAGT+TGG | + | chr3.4:64235098-64235117 | MS.gene38392:CDS | 30.0% | |
| TGTCATATCTCATCACAAAA+TGG | - | chr3.4:64233435-64233454 | None:intergenic | 30.0% | |
| ! | ACATATTTTCTCATGCTACA+AGG | + | chr3.4:64233383-64233402 | MS.gene38392:CDS | 30.0% |
| ! | GTCATTTAAAGCTGTGTTAA+TGG | - | chr3.4:64233989-64234008 | None:intergenic | 30.0% |
| ! | TGTGTATACCTGTATCTTTT+TGG | - | chr3.4:64234927-64234946 | None:intergenic | 30.0% |
| ! | TTATTCGGAATCATGCTTTT+GGG | + | chr3.4:64234986-64235005 | MS.gene38392:CDS | 30.0% |
| !! | AAACGTTTTGAGTGAATATG+CGG | - | chr3.4:64234110-64234129 | None:intergenic | 30.0% |
| !! | CACATTTGCTTTGAAATCAT+CGG | - | chr3.4:64234700-64234719 | None:intergenic | 30.0% |
| !!! | ACTTTTGGTTCTCCTTTAAT+AGG | + | chr3.4:64233355-64233374 | MS.gene38392:CDS | 30.0% |
| AAACACTACCAATACAGCAT+AGG | + | chr3.4:64235165-64235184 | MS.gene38392:CDS | 35.0% | |
| AAAGTCCTTCGAAGATGTTA+AGG | + | chr3.4:64235040-64235059 | MS.gene38392:CDS | 35.0% | |
| AACACTACCAATACAGCATA+GGG | + | chr3.4:64235166-64235185 | MS.gene38392:CDS | 35.0% | |
| AAGGAACAACGAGAAAACTA+TGG | + | chr3.4:64234563-64234582 | MS.gene38392:CDS | 35.0% | |
| AAGGGTCTATAAGGACTAAA+AGG | - | chr3.4:64233700-64233719 | None:intergenic | 35.0% | |
| AGAAGCAAATAGTGTTTGCA+GGG | + | chr3.4:64233233-64233252 | MS.gene38392:CDS | 35.0% | |
| ATGCTACAAGGAGAGAAAAT+TGG | + | chr3.4:64233395-64233414 | MS.gene38392:CDS | 35.0% | |
| ATTTCAAAGCAAATGTGAGC+AGG | + | chr3.4:64234703-64234722 | MS.gene38392:CDS | 35.0% | |
| CAGAAGATGTAAGTTCCAAA+GGG | - | chr3.4:64233718-64233737 | None:intergenic | 35.0% | |
| CAGTGCCATAACTTAAATGT+TGG | - | chr3.4:64233870-64233889 | None:intergenic | 35.0% | |
| CTTCGAAGATGTTAAGGATA+GGG | + | chr3.4:64235046-64235065 | MS.gene38392:CDS | 35.0% | |
| GAACCAAAAGTAACACATTG+GGG | - | chr3.4:64233346-64233365 | None:intergenic | 35.0% | |
| GAACTTCCAGAAGAATTTGA+AGG | + | chr3.4:64234777-64234796 | MS.gene38392:CDS | 35.0% | |
| GAGAACCAAAAGTAACACAT+TGG | - | chr3.4:64233348-64233367 | None:intergenic | 35.0% | |
| GATACAGGTATACACAAAGA+TGG | + | chr3.4:64234931-64234950 | MS.gene38392:CDS | 35.0% | |
| TAAGTTCCAAAGGGTCTATA+AGG | - | chr3.4:64233709-64233728 | None:intergenic | 35.0% | |
| TACCTAACTCCAAAATCTCA+TGG | + | chr3.4:64233310-64233329 | MS.gene38392:CDS | 35.0% | |
| TAGAGGAACAGATAAGTGAT+TGG | + | chr3.4:64235078-64235097 | MS.gene38392:CDS | 35.0% | |
| TCATCACAAAATGGAAGAAG+TGG | - | chr3.4:64233426-64233445 | None:intergenic | 35.0% | |
| TTCAAATCGTTGGTCAAAAG+AGG | - | chr3.4:64233488-64233507 | None:intergenic | 35.0% | |
| TTCTTCCCTTCAAATTCTTC+TGG | - | chr3.4:64234786-64234805 | None:intergenic | 35.0% | |
| TTTAGTCCTTATAGACCCTT+TGG | + | chr3.4:64233700-64233719 | MS.gene38392:CDS | 35.0% | |
| TTTATATGGCTAAAGGTGGA+AGG | + | chr3.4:64234901-64234920 | MS.gene38392:CDS | 35.0% | |
| ! | ATGTTGGTGCAGACTTTTAT+CGG | - | chr3.4:64233854-64233873 | None:intergenic | 35.0% |
| ! | CTGCACCAACATTTAAGTTA+TGG | + | chr3.4:64233862-64233881 | MS.gene38392:CDS | 35.0% |
| ! | GTTATTCGGAATCATGCTTT+TGG | + | chr3.4:64234985-64235004 | MS.gene38392:CDS | 35.0% |
| ! | TTAAGTTATGGCACTGAACT+AGG | + | chr3.4:64233874-64233893 | MS.gene38392:CDS | 35.0% |
| !! | AACACAGCTTTAAATGACCT+TGG | + | chr3.4:64233991-64234010 | MS.gene38392:CDS | 35.0% |
| !! | AAGAAAGAATGGGTTGAGAT+AGG | + | chr3.4:64234801-64234820 | MS.gene38392:CDS | 35.0% |
| !! | AGGGTTCTACTTTTGTTAAG+TGG | + | chr3.4:64235138-64235157 | MS.gene38392:CDS | 35.0% |
| !! | GTTCTACTTTTGTTAAGTGG+TGG | + | chr3.4:64235141-64235160 | MS.gene38392:CDS | 35.0% |
| !!! | AGTTGGTAAGGATGTGTTTT+TGG | + | chr3.4:64235115-64235134 | MS.gene38392:CDS | 35.0% |
| !!! | ATGAGATTTTGGAGTTAGGT+AGG | - | chr3.4:64233311-64233330 | None:intergenic | 35.0% |
| !!! | GGATAGGGTTTTAAAGTTAG+AGG | + | chr3.4:64235061-64235080 | MS.gene38392:CDS | 35.0% |
| AATGTTTACTTACCAGGCCA+AGG | - | chr3.4:64234011-64234030 | None:intergenic | 40.0% | |
| AGCAGTTACAGAGAAATGAG+GGG | + | chr3.4:64234627-64234646 | MS.gene38392:CDS | 40.0% | |
| AGGTTACTACGATGCATTCA+AGG | + | chr3.4:64234662-64234681 | MS.gene38392:CDS | 40.0% | |
| ATGAGGGGACATCAGAAAAA+AGG | + | chr3.4:64234642-64234661 | MS.gene38392:CDS | 40.0% | |
| CAAAAGTAACACATTGGGGA+TGG | - | chr3.4:64233342-64233361 | None:intergenic | 40.0% | |
| CAGAAGCAAATAGTGTTTGC+AGG | + | chr3.4:64233232-64233251 | MS.gene38392:CDS | 40.0% | |
| CAGCAGTTACAGAGAAATGA+GGG | + | chr3.4:64234626-64234645 | MS.gene38392:CDS | 40.0% | |
| CAGGTATACACAAAGATGGT+TGG | + | chr3.4:64234935-64234954 | MS.gene38392:CDS | 40.0% | |
| CCATATAAACACGTCCATCA+CGG | - | chr3.4:64234890-64234909 | None:intergenic | 40.0% | |
| CCTATCCTTAACATCTTCGA+AGG | - | chr3.4:64235048-64235067 | None:intergenic | 40.0% | |
| CCTTCGAAGATGTTAAGGAT+AGG | + | chr3.4:64235045-64235064 | MS.gene38392:CDS | 40.0% | |
| CGTGTTTATATGGCTAAAGG+TGG | + | chr3.4:64234897-64234916 | MS.gene38392:CDS | 40.0% | |
| CTAACTCCAAAATCTCATGG+CGG | + | chr3.4:64233313-64233332 | MS.gene38392:CDS | 40.0% | |
| GAAGTAGTATGCTCAGACAA+TGG | - | chr3.4:64233949-64233968 | None:intergenic | 40.0% | |
| GATTCTTCCCTATGCTGTAT+TGG | - | chr3.4:64235176-64235195 | None:intergenic | 40.0% | |
| GCAGAAGATGTAAGTTCCAA+AGG | - | chr3.4:64233719-64233738 | None:intergenic | 40.0% | |
| GGACGTGTTTATATGGCTAA+AGG | + | chr3.4:64234894-64234913 | MS.gene38392:CDS | 40.0% | |
| GTGAAACTGCTTCAAATCGT+TGG | - | chr3.4:64233498-64233517 | None:intergenic | 40.0% | |
| TACATCTTCTGCACTACAAG+TGG | + | chr3.4:64233727-64233746 | MS.gene38392:CDS | 40.0% | |
| TCAGCAGTTACAGAGAAATG+AGG | + | chr3.4:64234625-64234644 | MS.gene38392:CDS | 40.0% | |
| TTGGAACATGCTGATAAGAG+AGG | + | chr3.4:64234954-64234973 | MS.gene38392:CDS | 40.0% | |
| TTGTAGGCTAATGGGAACAA+CGG | + | chr3.4:64233642-64233661 | MS.gene38392:CDS | 40.0% | |
| TTGTCTGAGCATACTACTTC+AGG | + | chr3.4:64233949-64233968 | MS.gene38392:CDS | 40.0% | |
| ! | GTAGAAATCTGAAGTTCCAG+TGG | - | chr3.4:64233578-64233597 | None:intergenic | 40.0% |
| ! | TAGAAGACTAGTTGAGCCTT+TGG | + | chr3.4:64234833-64234852 | MS.gene38392:CDS | 40.0% |
| !!! | CATCCCCAATGTGTTACTTT+TGG | + | chr3.4:64233340-64233359 | MS.gene38392:CDS | 40.0% |
| !!! | GGTAAGGATGTGTTTTTGGA+GGG | + | chr3.4:64235119-64235138 | MS.gene38392:CDS | 40.0% |
| !!! | TGGTAAGGATGTGTTTTTGG+AGG | + | chr3.4:64235118-64235137 | MS.gene38392:CDS | 40.0% |
| AAACCCTGATGCAATTCTGC+AGG | + | chr3.4:64233777-64233796 | MS.gene38392:CDS | 45.0% | |
| AGACATTCAAGGAACCGTGA+TGG | + | chr3.4:64234873-64234892 | MS.gene38392:CDS | 45.0% | |
| ATGACCTGCAGAATTGCATC+AGG | - | chr3.4:64233784-64233803 | None:intergenic | 45.0% | |
| CAAATGCTGCAACTGTCACA+AGG | + | chr3.4:64233611-64233630 | MS.gene38392:CDS | 45.0% | |
| CAGCATTAGAGGAACGGAAA+AGG | + | chr3.4:64234544-64234563 | MS.gene38392:CDS | 45.0% | |
| CATGCTGATAAGAGAGGAGA+AGG | + | chr3.4:64234960-64234979 | MS.gene38392:CDS | 45.0% | |
| GAGAGGAGAAGGAGGTTATT+CGG | + | chr3.4:64234971-64234990 | MS.gene38392:CDS | 45.0% | |
| GTGGAAGGCCAAAAAGATAC+AGG | + | chr3.4:64234916-64234935 | MS.gene38392:CDS | 45.0% | |
| TCTGAGCATACTACTTCAGG+AGG | + | chr3.4:64233952-64233971 | MS.gene38392:CDS | 45.0% | |
| TGACCTGCAGAATTGCATCA+GGG | - | chr3.4:64233783-64233802 | None:intergenic | 45.0% | |
| TGGAGTTAGGTAGGTTTCCA+TGG | - | chr3.4:64233302-64233321 | None:intergenic | 45.0% | |
| ! | ACGAGCAAATCGACTCATCT+CGG | + | chr3.4:64233547-64233566 | MS.gene38392:CDS | 45.0% |
| ! | CATGCTGCTTGTAGGCTAAT+GGG | + | chr3.4:64233634-64233653 | MS.gene38392:CDS | 45.0% |
| ! | GCTAGAACTTGCAGGAGTAT+GGG | + | chr3.4:64234725-64234744 | MS.gene38392:CDS | 45.0% |
| ! | TGGATACCGCCATGAGATTT+TGG | - | chr3.4:64233322-64233341 | None:intergenic | 45.0% |
| !! | AGCTTTAAATGACCTTGGCC+TGG | + | chr3.4:64233996-64234015 | MS.gene38392:CDS | 45.0% |
| !! | CCGTGATGGACGTGTTTATA+TGG | + | chr3.4:64234887-64234906 | MS.gene38392:CDS | 45.0% |
| !!! | CGCCATGAGATTTTGGAGTT+AGG | - | chr3.4:64233315-64233334 | None:intergenic | 45.0% |
| ACTCATCTCGGAAAAGCCAC+TGG | + | chr3.4:64233559-64233578 | MS.gene38392:CDS | 50.0% | |
| AGATACGCTCTGTGGACGAT+AGG | + | chr3.4:64234592-64234611 | MS.gene38392:CDS | 50.0% | |
| AGTGGAGCAAGGAGGATTCT+TGG | - | chr3.4:64233463-64233482 | None:intergenic | 50.0% | |
| CAAAAGAGGAGAGTGGAGCA+AGG | - | chr3.4:64233474-64233493 | None:intergenic | 50.0% | |
| CAGCAGCAGCATTAGAGGAA+CGG | + | chr3.4:64234538-64234557 | MS.gene38392:CDS | 50.0% | |
| CGTTGGTCAAAAGAGGAGAG+TGG | - | chr3.4:64233481-64233500 | None:intergenic | 50.0% | |
| GCTGATAAGAGAGGAGAAGG+AGG | + | chr3.4:64234963-64234982 | MS.gene38392:CDS | 50.0% | |
| GGACCAAAAGATACGCTCTG+TGG | + | chr3.4:64234584-64234603 | MS.gene38392:CDS | 50.0% | |
| GGCAATTCTGGCAACCCTTT+GGG | + | chr3.4:64233276-64233295 | MS.gene38392:CDS | 50.0% | |
| GGCTAGAACTTGCAGGAGTA+TGG | + | chr3.4:64234724-64234743 | MS.gene38392:CDS | 50.0% | |
| GTAGGTTTCCATGGCCCAAA+GGG | - | chr3.4:64233293-64233312 | None:intergenic | 50.0% | |
| TAGGCTAATGGGAACAACGG+CGG | + | chr3.4:64233645-64233664 | MS.gene38392:CDS | 50.0% | |
| TCAAGCAGCAGCAGCATTAG+AGG | + | chr3.4:64234533-64234552 | MS.gene38392:CDS | 50.0% | |
| TGGCAATTCTGGCAACCCTT+TGG | + | chr3.4:64233275-64233294 | MS.gene38392:CDS | 50.0% | |
| ! | ATGCTTTTGGGCTGAGGTAG+AGG | + | chr3.4:64234998-64235017 | MS.gene38392:CDS | 50.0% |
| ! | CGTCCACAGAGCGTATCTTT+TGG | - | chr3.4:64234590-64234609 | None:intergenic | 50.0% |
| ! | GCATGCTGCTTGTAGGCTAA+TGG | + | chr3.4:64233633-64233652 | MS.gene38392:CDS | 50.0% |
| ! | GGAATCATGCTTTTGGGCTG+AGG | + | chr3.4:64234992-64235011 | MS.gene38392:CDS | 50.0% |
| ! | TCACAAGGCATGCTGCTTGT+AGG | + | chr3.4:64233626-64233645 | MS.gene38392:CDS | 50.0% |
| AAGAGGAGAGTGGAGCAAGG+AGG | - | chr3.4:64233471-64233490 | None:intergenic | 55.0% | |
| AGGGTTGCCAGAATTGCCAC+TGG | - | chr3.4:64233274-64233293 | None:intergenic | 55.0% | |
| GGTAGGTTTCCATGGCCCAA+AGG | - | chr3.4:64233294-64233313 | None:intergenic | 55.0% | |
| GTGAGCAGGCTAGAACTTGC+AGG | + | chr3.4:64234717-64234736 | MS.gene38392:CDS | 55.0% | |
| ! | GTGTTTGCAGGGCACTCATC+TGG | + | chr3.4:64233244-64233263 | MS.gene38392:CDS | 55.0% |
| ! | TGGTGGACCAGTGGCAATTC+TGG | + | chr3.4:64233264-64233283 | MS.gene38392:CDS | 55.0% |
| ! | TTTGCAGGGCACTCATCTGG+TGG | + | chr3.4:64233247-64233266 | MS.gene38392:CDS | 55.0% |
| TCTGGCAACCCTTTGGGCCA+TGG | + | chr3.4:64233282-64233301 | MS.gene38392:CDS | 60.0% | |
| ! | GCACTCATCTGGTGGACCAG+TGG | + | chr3.4:64233255-64233274 | MS.gene38392:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 64233223 | 64235223 | 64233223 | ID=MS.gene38392 |
| chr3.4 | mRNA | 64233223 | 64235223 | 64233223 | ID=MS.gene38392.t1;Parent=MS.gene38392 |
| chr3.4 | exon | 64233223 | 64234017 | 64233223 | ID=MS.gene38392.t1.exon1;Parent=MS.gene38392.t1 |
| chr3.4 | CDS | 64233223 | 64234017 | 64233223 | ID=cds.MS.gene38392.t1;Parent=MS.gene38392.t1 |
| chr3.4 | exon | 64234510 | 64235223 | 64234510 | ID=MS.gene38392.t1.exon2;Parent=MS.gene38392.t1 |
| chr3.4 | CDS | 64234510 | 64235223 | 64234510 | ID=cds.MS.gene38392.t1;Parent=MS.gene38392.t1 |
| Gene Sequence |
| Protein sequence |
