AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26931

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26931.t1 MTR_1g021945 95.984 249 10 0 1 249 1 249 1.37e-165 457
MS.gene26931.t1 MTR_3g111620 74.104 251 62 3 1 249 1 250 3.48e-129 365
MS.gene26931.t1 MTR_8g036215 52.439 246 106 4 1 244 1 237 3.00e-87 259
MS.gene26931.t1 MTR_5g022350 55.785 242 95 6 7 245 11 243 8.20e-85 255
MS.gene26931.t1 MTR_6g079580 52.893 242 102 5 11 245 4 240 1.58e-84 252
MS.gene26931.t1 MTR_4g073720 54.468 235 99 4 12 244 11 239 2.61e-84 255
MS.gene26931.t1 MTR_8g056820 51.779 253 114 5 3 249 1 251 1.40e-83 250
MS.gene26931.t1 MTR_8g107140 53.279 244 104 4 9 246 7 246 2.66e-82 246
MS.gene26931.t1 MTR_8g037890 52.869 244 105 5 9 248 13 250 6.74e-82 248
MS.gene26931.t1 MTR_8g075510 54.098 244 100 6 8 248 13 247 4.63e-81 243
MS.gene26931.t1 MTR_1g025420 55.649 239 94 7 16 244 9 245 6.47e-81 246
MS.gene26931.t1 MTR_1g025420 55.000 240 99 7 11 244 9 245 7.92e-81 243
MS.gene26931.t1 MTR_1g062590 56.410 234 95 6 16 245 12 242 2.21e-80 241
MS.gene26931.t1 MTR_3g114030 56.140 228 92 6 25 246 6 231 2.93e-80 241
MS.gene26931.t1 MTR_8g075550 55.230 239 95 5 19 248 22 257 8.77e-80 242
MS.gene26931.t1 MTR_8g075510 54.167 240 98 6 8 244 13 243 1.72e-79 241
MS.gene26931.t1 MTR_4g073730 52.869 244 105 6 10 245 7 248 2.90e-77 235
MS.gene26931.t1 MTR_4g073730 52.869 244 105 6 10 245 7 248 5.59e-77 236
MS.gene26931.t1 MTR_2g067980 51.626 246 110 6 7 245 4 247 3.38e-76 249
MS.gene26931.t1 MTR_5g022310 49.801 251 113 6 10 249 7 255 4.30e-76 231
MS.gene26931.t1 MTR_1g062660 51.837 245 110 7 6 246 3 243 4.73e-76 231
MS.gene26931.t1 MTR_5g022310 49.801 251 113 6 10 249 7 255 8.39e-76 232
MS.gene26931.t1 MTR_1g062340 52.263 243 108 7 8 246 5 243 1.22e-75 229
MS.gene26931.t1 MTR_1g062350 52.766 235 104 6 16 246 12 243 1.42e-75 229
MS.gene26931.t1 MTR_5g059200 52.466 223 98 2 24 246 27 241 1.62e-75 231
MS.gene26931.t1 MTR_2g069660 53.750 240 104 6 10 245 7 243 2.86e-75 229
MS.gene26931.t1 MTR_7g102380 53.363 223 97 6 28 246 23 242 6.75e-75 228
MS.gene26931.t1 MTR_1g062370 51.915 235 106 6 16 246 12 243 2.47e-74 226
MS.gene26931.t1 MTR_2g068030 50.679 221 103 5 28 244 25 243 3.62e-74 226
MS.gene26931.t1 MTR_1g062630 53.191 235 103 6 16 246 12 243 6.97e-74 226
MS.gene26931.t1 MTR_7g062610 48.444 225 114 2 22 245 19 242 4.84e-70 215
MS.gene26931.t1 MTR_3g068015 45.749 247 123 4 9 245 3 248 1.09e-69 214
MS.gene26931.t1 MTR_6g009480 45.528 246 125 7 9 247 11 254 1.59e-67 210
MS.gene26931.t1 MTR_2g068655 46.696 227 115 5 23 245 28 252 2.07e-65 206
MS.gene26931.t1 MTR_1g062690 46.383 235 97 5 16 247 12 220 1.44e-61 193
MS.gene26931.t1 MTR_4g063630 42.500 240 122 8 15 244 18 251 6.19e-57 182
MS.gene26931.t1 MTR_5g010635 43.231 229 106 8 23 248 21 228 2.24e-53 172
MS.gene26931.t1 MTR_5g010640 39.919 248 122 8 8 245 6 236 4.31e-49 161
MS.gene26931.t1 MTR_8g096900 39.662 237 120 7 11 245 33 248 4.01e-48 159
MS.gene26931.t1 MTR_2g067990 41.818 220 100 8 28 245 29 222 2.55e-44 159
MS.gene26931.t1 MTR_8g089020 51.145 131 59 1 107 237 31 156 1.62e-43 145
MS.gene26931.t1 MTR_5g022350 53.595 153 62 5 7 156 76 222 6.13e-43 145
MS.gene26931.t1 MTR_2g067970 43.915 189 95 7 68 249 2 186 8.45e-40 146
MS.gene26931.t1 MTR_5g023850 35.081 248 115 9 10 249 11 220 8.92e-38 132
MS.gene26931.t1 MTR_2g063150 31.799 239 150 7 9 238 11 245 4.09e-33 121
MS.gene26931.t1 MTR_7g076360 35.945 217 73 5 23 237 5 157 2.45e-31 114
MS.gene26931.t1 MTR_8g096910 45.113 133 63 3 10 141 6 129 1.05e-29 110
MS.gene26931.t1 MTR_1g062390 32.377 244 142 7 11 245 9 238 1.20e-29 111
MS.gene26931.t1 MTR_8g096920 32.143 224 85 6 23 245 16 173 1.54e-26 101
MS.gene26931.t1 MTR_3g081550 43.750 96 49 3 109 201 16 109 5.96e-14 66.6
MS.gene26931.t1 MTR_1g062640 34.839 155 76 7 21 166 8 146 1.19e-12 64.3
MS.gene26931.t1 MTR_5g068670 47.561 82 38 3 63 143 12 89 7.65e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26931.t1 AT1G75030 68.333 240 72 3 11 248 9 246 6.13e-116 332
MS.gene26931.t1 AT1G75050 68.067 238 70 4 11 245 9 243 2.65e-112 323
MS.gene26931.t1 AT1G75040 64.255 235 80 3 11 245 9 239 2.63e-106 307
MS.gene26931.t1 AT1G19320 61.088 239 87 4 11 244 9 246 1.38e-96 283
MS.gene26931.t1 AT4G38660 58.091 241 93 4 11 249 15 249 5.72e-91 272
MS.gene26931.t1 AT4G38660 59.149 235 86 5 17 249 1 227 6.08e-89 266
MS.gene26931.t1 AT1G73620 55.066 227 95 3 23 246 39 261 2.58e-84 252
MS.gene26931.t1 AT4G24180 55.918 245 96 7 9 246 18 257 4.30e-83 249
MS.gene26931.t1 AT4G24180 55.918 245 96 7 9 246 18 257 1.01e-82 250
MS.gene26931.t1 AT1G77700 52.282 241 104 4 6 244 40 271 2.44e-82 249
MS.gene26931.t1 AT1G77700 52.282 241 104 4 6 244 40 271 3.00e-82 249
MS.gene26931.t1 AT4G24180 54.365 252 104 7 2 246 5 252 6.73e-82 246
MS.gene26931.t1 AT4G24180 54.365 252 104 7 2 246 5 252 1.21e-81 247
MS.gene26931.t1 AT1G75800 54.150 253 103 8 1 245 1 248 4.87e-81 246
MS.gene26931.t1 AT1G18250 54.185 227 97 3 23 246 18 240 5.78e-81 243
MS.gene26931.t1 AT1G77700 54.299 221 93 2 24 244 87 299 9.99e-81 246
MS.gene26931.t1 AT1G18250 53.304 227 99 3 23 246 19 241 5.17e-80 241
MS.gene26931.t1 AT5G24620 54.237 236 99 4 18 245 17 251 1.19e-79 246
MS.gene26931.t1 AT5G24620 54.237 236 99 4 18 245 72 306 2.95e-79 246
MS.gene26931.t1 AT1G20030 56.828 227 88 6 28 246 5 229 4.55e-79 240
MS.gene26931.t1 AT1G20030 56.828 227 88 6 28 246 22 246 5.86e-79 241
MS.gene26931.t1 AT5G24620 54.237 236 99 4 18 245 93 327 6.77e-79 246
MS.gene26931.t1 AT2G17860 56.048 248 96 8 10 248 9 252 1.46e-78 237
MS.gene26931.t1 AT4G36010 54.936 233 93 6 24 246 21 251 6.54e-76 232
MS.gene26931.t1 AT4G36010 54.936 233 93 6 24 246 21 251 6.54e-76 232
MS.gene26931.t1 AT4G24180 55.022 229 91 7 9 230 18 241 6.48e-74 228
MS.gene26931.t1 AT4G24180 53.390 236 99 7 2 230 5 236 8.05e-73 225
MS.gene26931.t1 AT4G38670 50.204 245 111 8 10 245 5 247 2.60e-70 217
MS.gene26931.t1 AT4G38670 50.204 245 111 8 10 245 5 247 2.60e-70 217
MS.gene26931.t1 AT5G40020 45.082 244 125 5 12 247 8 250 9.72e-69 213
MS.gene26931.t1 AT4G38670 52.889 225 97 7 28 245 9 231 1.00e-68 213
MS.gene26931.t1 AT5G02140 46.250 240 126 3 8 245 3 241 1.06e-66 207
MS.gene26931.t1 AT5G02140 46.091 243 128 3 8 248 3 244 2.12e-66 207
MS.gene26931.t1 AT5G38280 45.968 248 122 8 10 249 11 254 1.91e-61 204
MS.gene26931.t1 AT5G38280 45.968 248 122 8 10 249 11 254 2.38e-61 204
MS.gene26931.t1 AT4G18253 41.870 246 131 5 7 249 6 242 2.60e-56 180
MS.gene26931.t1 AT2G28790 43.277 238 125 6 16 244 12 248 3.21e-56 180
MS.gene26931.t1 AT4G11650 43.913 230 108 6 17 245 14 223 3.22e-56 180
MS.gene26931.t1 AT2G28790 43.750 240 121 7 16 244 37 273 4.85e-56 181
MS.gene26931.t1 AT4G36000 56.667 150 56 4 101 249 1 142 7.44e-50 162
MS.gene26931.t1 AT4G36000 56.667 150 56 4 101 249 1 142 7.44e-50 162
MS.gene26931.t1 AT1G70250 40.948 232 120 7 28 249 147 371 4.13e-48 169
MS.gene26931.t1 AT4G18250 40.664 241 133 6 10 247 41 274 5.79e-44 157
MS.gene26931.t1 AT5G24620 55.000 120 47 2 133 245 15 134 9.86e-36 129
MS.gene26931.t1 AT2G24810 64.935 77 27 0 168 244 116 192 1.29e-27 105

Find 96 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGTTGGTCAGGACGCTTC+TGG 0.127184 1.3:-3173925 MS.gene26931:CDS
ATTTGGCCGGGAACTCTTTC+AGG 0.233483 1.3:-3174022 MS.gene26931:CDS
TTCAACATGTTCCTCTTATT+AGG 0.273557 1.3:-3174187 MS.gene26931:intron
CGGGAACTCTTTCAGGCAAC+GGG 0.293795 1.3:-3174015 MS.gene26931:CDS
TCAAGCACTTGCACGTGTTC+TGG 0.293907 1.3:-3173449 MS.gene26931:CDS
CATTGGGGCAAAACGTGATA+TGG 0.343492 1.3:+3173417 None:intergenic
GGTCAGGACGCTTCTGGGCT+CGG 0.343568 1.3:-3173919 MS.gene26931:CDS
GAAGTCCTTGCCACCATTAC+CGG 0.344792 1.3:+3173772 None:intergenic
ACATTGGCAGAATTCACTAT+TGG 0.360199 1.3:-3173800 MS.gene26931:CDS
CCGTTGCCTGAAAGAGTTCC+CGG 0.373895 1.3:+3174016 None:intergenic
GTGAATTCTGCCAATGTTAC+CGG 0.381859 1.3:+3173806 None:intergenic
GGGTTGGTCAGGACGCTTCT+GGG 0.383926 1.3:-3173924 MS.gene26931:CDS
GGCAACGGGGCTGCAATTCT+CGG 0.400439 1.3:-3174001 MS.gene26931:CDS
GTGGATGTCCGGCAGAGCTT+AGG 0.403966 1.3:-3173646 MS.gene26931:CDS
ACCAATGCAGCTACACCATT+TGG 0.411415 1.3:-3174039 MS.gene26931:CDS
GGGTGTGTTGCGGACTTGAA+TGG 0.414444 1.3:-3173668 MS.gene26931:CDS
GAACATGTTGAAGAGAAGAA+AGG 0.426997 1.3:+3174198 None:intergenic
GGCGTGTAAGAGCGCGTGTT+TGG 0.435818 1.3:-3173600 MS.gene26931:CDS
GGACGCTTCTGGGCTCGGAC+TGG 0.446805 1.3:-3173914 MS.gene26931:CDS
ACTGCACCATCGGGTTGGTC+AGG 0.452166 1.3:-3173935 MS.gene26931:CDS
TATGATCATGATGATCCATT+GGG 0.460244 1.3:+3173401 None:intergenic
GCAAGCTTTCTTAAATATCT+CGG 0.462492 1.3:+3173505 None:intergenic
GCAAAACGTGATATGGTAAT+CGG 0.467360 1.3:+3173424 None:intergenic
TGGATGTCCGGCAGAGCTTA+GGG 0.471726 1.3:-3173645 MS.gene26931:CDS
CGCGTGTTTGGCGTTCAATA+CGG 0.474969 1.3:-3173588 MS.gene26931:CDS
ACAATGTAGGCATGGGTGTA+CGG 0.477021 1.3:-3173724 MS.gene26931:CDS
ACCGGTGATTGTCAATATGC+GGG 0.477080 1.3:-3173689 MS.gene26931:CDS
CCGGGAACTCTTTCAGGCAA+CGG 0.481046 1.3:-3174016 MS.gene26931:CDS
AATGTTGTTTACCTAATAAG+AGG 0.483808 1.3:+3174176 None:intergenic
TAGGGTGAACAGTGCAGGTT+CGG 0.484236 1.3:-3173627 MS.gene26931:CDS
CAATGTAGGCATGGGTGTAC+GGG 0.485572 1.3:-3173723 MS.gene26931:CDS
TGTGTCACAGGAGATTGTTC+CGG 0.487338 1.3:-3173860 MS.gene26931:CDS
CTATGATCATGATGATCCAT+TGG 0.489037 1.3:+3173400 None:intergenic
AGTTAGTTTGACTGCACCAT+CGG 0.493248 1.3:-3173945 MS.gene26931:CDS
ACTATTGGATCAGCCGGTAA+TGG 0.496770 1.3:-3173785 MS.gene26931:CDS
TTGTGGCGTGGCATGTTGGC+CGG 0.499950 1.3:+3173550 None:intergenic
TGAAAGAGTTCCCGGCCAAA+TGG 0.505042 1.3:+3174024 None:intergenic
GAGCTTAGGGTGAACAGTGC+AGG 0.505667 1.3:-3173632 MS.gene26931:CDS
CTGTTCACCCTAAGCTCTGC+CGG 0.506624 1.3:+3173638 None:intergenic
CGGACTGGTTGCGAATTTGA+CGG 0.511038 1.3:-3173899 MS.gene26931:CDS
GTTAGTTTGACTGCACCATC+GGG 0.514040 1.3:-3173944 MS.gene26931:CDS
TAAGCATAACTGTAAGCAGT+TGG 0.515449 1.3:+3173482 None:intergenic
GAACAGTGCAGGTTCGGTGG+TGG 0.517897 1.3:-3173621 MS.gene26931:CDS
GGCAATGGTAAATGTGTCAC+AGG 0.521889 1.3:-3173872 MS.gene26931:CDS
AGTCAAACTAACTGATGTAC+CGG 0.522716 1.3:+3173955 None:intergenic
ATGCAGCTACACCATTTGGC+CGG 0.527935 1.3:-3174035 MS.gene26931:CDS
AAGCATAACTGTAAGCAGTT+GGG 0.532279 1.3:+3173483 None:intergenic
CGACGGTTACAATGTAGGCA+TGG 0.532942 1.3:-3173732 MS.gene26931:CDS
GAATTCACTATTGGATCAGC+CGG 0.534190 1.3:-3173791 MS.gene26931:CDS
GGACTTGAATGGTGGATGTC+CGG 0.536818 1.3:-3173657 MS.gene26931:CDS
GTAGCTGCATTGGTTGTGTA+TGG 0.541554 1.3:+3174048 None:intergenic
GGACTTCTATGATGTGAGCT+TGG 0.548719 1.3:-3173756 MS.gene26931:CDS
GCCAAATGGTGTAGCTGCAT+TGG 0.549645 1.3:+3174038 None:intergenic
GGTTGCGAATTTGACGGTGC+AGG 0.549983 1.3:-3173893 MS.gene26931:CDS
TCCGATACAGTTTAGTCCAC+CGG 0.550929 1.3:+3173841 None:intergenic
TGCAGCTACACCATTTGGCC+GGG 0.554309 1.3:-3174034 MS.gene26931:CDS
GAATTTGACGGTGCAGGCAA+TGG 0.556474 1.3:-3173887 MS.gene26931:CDS
TTGGTCGACGGTTACAATGT+AGG 0.559348 1.3:-3173737 MS.gene26931:CDS
CCCCGCATATTGACAATCAC+CGG 0.568073 1.3:+3173688 None:intergenic
GACGGTTACAATGTAGGCAT+GGG 0.570839 1.3:-3173731 MS.gene26931:CDS
AAATATCTCGGAATAATGTG+TGG 0.571915 1.3:+3173517 None:intergenic
ATGTTTGTGGCGTGGCATGT+TGG 0.573358 1.3:+3173546 None:intergenic
CACCGGTGATTGTCAATATG+CGG 0.583056 1.3:-3173690 MS.gene26931:CDS
TCCGGTGGACTAAACTGTAT+CGG 0.584625 1.3:-3173842 MS.gene26931:CDS
GTTTGACTGCACCATCGGGT+TGG 0.589766 1.3:-3173940 MS.gene26931:CDS
TCAATATGCGGGGTGTGTTG+CGG 0.592968 1.3:-3173678 MS.gene26931:CDS
ATGGGTGTACGGGCTAGAGG+AGG 0.595042 1.3:-3173713 MS.gene26931:CDS
GTCAAACTAACTGATGTACC+GGG 0.599721 1.3:+3173956 None:intergenic
GTACGGGCTAGAGGAGGCAC+CGG 0.600853 1.3:-3173707 MS.gene26931:CDS
GGGGCTGCAATTCTCGGTCA+AGG 0.600916 1.3:-3173995 MS.gene26931:CDS
GGCATGGGTGTACGGGCTAG+AGG 0.603450 1.3:-3173716 MS.gene26931:CDS
TGTGTTGCGGACTTGAATGG+TGG 0.603671 1.3:-3173665 MS.gene26931:CDS
AGGTACCCCACCGGTAACAT+TGG 0.604332 1.3:-3173816 MS.gene26931:CDS
GGTGAACAGTGCAGGTTCGG+TGG 0.604516 1.3:-3173624 MS.gene26931:CDS
ATTGGATCAGCCGGTAATGG+TGG 0.605464 1.3:-3173782 MS.gene26931:CDS
AGGCAATTTAGCATCTGCTA+CGG 0.606331 1.3:-3174077 MS.gene26931:CDS
AATTCTGCCAATGTTACCGG+TGG 0.609607 1.3:+3173809 None:intergenic
ATCAGCCGGTAATGGTGGCA+AGG 0.611295 1.3:-3173777 MS.gene26931:CDS
AATATCTCGGAATAATGTGT+GGG 0.612361 1.3:+3173518 None:intergenic
TATGATGTGAGCTTGGTCGA+CGG 0.617152 1.3:-3173749 MS.gene26931:CDS
TTCTGCCAATGTTACCGGTG+GGG 0.629018 1.3:+3173811 None:intergenic
GTCACAGGAGATTGTTCCGG+TGG 0.632624 1.3:-3173857 MS.gene26931:CDS
ATTCTGCCAATGTTACCGGT+GGG 0.634739 1.3:+3173810 None:intergenic
TGTGTGGGCGAACATGTTTG+TGG 0.637601 1.3:+3173533 None:intergenic
GGACTAAACTGTATCGGAGG+AGG 0.643072 1.3:-3173836 MS.gene26931:CDS
GGGCGAACATGTTTGTGGCG+TGG 0.644582 1.3:+3173538 None:intergenic
AAGCGTCCTGACCAACCCGA+TGG 0.645342 1.3:+3173929 None:intergenic
GGGAACTCTTTCAGGCAACG+GGG 0.664283 1.3:-3174014 MS.gene26931:CDS
GTGTTTGGCGTTCAATACGG+AGG 0.667596 1.3:-3173585 MS.gene26931:CDS
CCGGTGATTGTCAATATGCG+GGG 0.674634 1.3:-3173688 MS.gene26931:CDS
GCTGCAATTCTCGGTCAAGG+TGG 0.678285 1.3:-3173992 MS.gene26931:CDS
TCAAACTAACTGATGTACCG+GGG 0.689044 1.3:+3173957 None:intergenic
TATCGGAGGAGGTACCCCAC+CGG 0.691570 1.3:-3173825 MS.gene26931:CDS
GGTGGACTAAACTGTATCGG+AGG 0.699134 1.3:-3173839 MS.gene26931:CDS
ATGATCATGATGATCCATTG+GGG 0.705650 1.3:+3173402 None:intergenic
CAAACTAACTGATGTACCGG+GGG 0.713886 1.3:+3173958 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGATTTTTAAAAAGACT+AGG + chr1.3:3173481-3173500 None:intergenic 15.0%
!! AATGTTGTTTACCTAATAAG+AGG + chr1.3:3173456-3173475 None:intergenic 25.0%
!!! TGCATGAATATATTTTTTGC+AGG - chr1.3:3173532-3173551 MS.gene26931:CDS 25.0%
AAATATCTCGGAATAATGTG+TGG + chr1.3:3174115-3174134 None:intergenic 30.0%
AATATCTCGGAATAATGTGT+GGG + chr1.3:3174114-3174133 None:intergenic 30.0%
GCAAGCTTTCTTAAATATCT+CGG + chr1.3:3174127-3174146 None:intergenic 30.0%
TTCAACATGTTCCTCTTATT+AGG - chr1.3:3173442-3173461 MS.gene26931:CDS 30.0%
! TTGAAGAGAAGAAAGGTTTT+CGG + chr1.3:3173427-3173446 None:intergenic 30.0%
AAGCATAACTGTAAGCAGTT+GGG + chr1.3:3174149-3174168 None:intergenic 35.0%
ACATTGGCAGAATTCACTAT+TGG - chr1.3:3173829-3173848 MS.gene26931:CDS 35.0%
AGTCAAACTAACTGATGTAC+CGG + chr1.3:3173677-3173696 None:intergenic 35.0%
GAACATGTTGAAGAGAAGAA+AGG + chr1.3:3173434-3173453 None:intergenic 35.0%
GCAAAACGTGATATGGTAAT+CGG + chr1.3:3174208-3174227 None:intergenic 35.0%
TAAGCATAACTGTAAGCAGT+TGG + chr1.3:3174150-3174169 None:intergenic 35.0%
! AGAAGAAAGGTTTTCGGATT+TGG + chr1.3:3173421-3173440 None:intergenic 35.0%
AGGCAATTTAGCATCTGCTA+CGG - chr1.3:3173552-3173571 MS.gene26931:CDS 40.0%
GAATTCACTATTGGATCAGC+CGG - chr1.3:3173838-3173857 MS.gene26931:CDS 40.0%
GTCAAACTAACTGATGTACC+GGG + chr1.3:3173676-3173695 None:intergenic 40.0%
GTGAATTCTGCCAATGTTAC+CGG + chr1.3:3173826-3173845 None:intergenic 40.0%
TCAAACTAACTGATGTACCG+GGG + chr1.3:3173675-3173694 None:intergenic 40.0%
! AGTTAGTTTGACTGCACCAT+CGG - chr1.3:3173684-3173703 MS.gene26931:CDS 40.0%
! GGTTTTCGGATTTGGATTCA+AGG + chr1.3:3173413-3173432 None:intergenic 40.0%
AATTCTGCCAATGTTACCGG+TGG + chr1.3:3173823-3173842 None:intergenic 45.0%
ACAATGTAGGCATGGGTGTA+CGG - chr1.3:3173905-3173924 MS.gene26931:CDS 45.0%
ACCAATGCAGCTACACCATT+TGG - chr1.3:3173590-3173609 MS.gene26931:CDS 45.0%
ACCGGTGATTGTCAATATGC+GGG - chr1.3:3173940-3173959 MS.gene26931:CDS 45.0%
ACTATTGGATCAGCCGGTAA+TGG - chr1.3:3173844-3173863 MS.gene26931:CDS 45.0%
ATTCTGCCAATGTTACCGGT+GGG + chr1.3:3173822-3173841 None:intergenic 45.0%
CAAACTAACTGATGTACCGG+GGG + chr1.3:3173674-3173693 None:intergenic 45.0%
CACCGGTGATTGTCAATATG+CGG - chr1.3:3173939-3173958 MS.gene26931:CDS 45.0%
CATTGGGGCAAAACGTGATA+TGG + chr1.3:3174215-3174234 None:intergenic 45.0%
GACGGTTACAATGTAGGCAT+GGG - chr1.3:3173898-3173917 MS.gene26931:CDS 45.0%
GGACTTCTATGATGTGAGCT+TGG - chr1.3:3173873-3173892 MS.gene26931:CDS 45.0%
GGCAATGGTAAATGTGTCAC+AGG - chr1.3:3173757-3173776 MS.gene26931:CDS 45.0%
TATGATGTGAGCTTGGTCGA+CGG - chr1.3:3173880-3173899 MS.gene26931:CDS 45.0%
TCCGATACAGTTTAGTCCAC+CGG + chr1.3:3173791-3173810 None:intergenic 45.0%
TGTGTCACAGGAGATTGTTC+CGG - chr1.3:3173769-3173788 MS.gene26931:CDS 45.0%
TTGGTCGACGGTTACAATGT+AGG - chr1.3:3173892-3173911 MS.gene26931:CDS 45.0%
! CATATCACGTTTTGCCCCAA+TGG - chr1.3:3174213-3174232 MS.gene26931:CDS 45.0%
! GTTAGTTTGACTGCACCATC+GGG - chr1.3:3173685-3173704 MS.gene26931:CDS 45.0%
!! GTAGCTGCATTGGTTGTGTA+TGG + chr1.3:3173584-3173603 None:intergenic 45.0%
!! TCCGGTGGACTAAACTGTAT+CGG - chr1.3:3173787-3173806 MS.gene26931:CDS 45.0%
ATGCAGCTACACCATTTGGC+CGG - chr1.3:3173594-3173613 MS.gene26931:CDS 50.0%
ATGTTTGTGGCGTGGCATGT+TGG + chr1.3:3174086-3174105 None:intergenic 50.0%
ATTTGGCCGGGAACTCTTTC+AGG - chr1.3:3173607-3173626 MS.gene26931:CDS 50.0%
CAATGTAGGCATGGGTGTAC+GGG - chr1.3:3173906-3173925 MS.gene26931:CDS 50.0%
CCCCGCATATTGACAATCAC+CGG + chr1.3:3173944-3173963 None:intergenic 50.0%
CCGGTGATTGTCAATATGCG+GGG - chr1.3:3173941-3173960 MS.gene26931:CDS 50.0%
CGACGGTTACAATGTAGGCA+TGG - chr1.3:3173897-3173916 MS.gene26931:CDS 50.0%
CGCGTGTTTGGCGTTCAATA+CGG - chr1.3:3174041-3174060 MS.gene26931:CDS 50.0%
GAAGTCCTTGCCACCATTAC+CGG + chr1.3:3173860-3173879 None:intergenic 50.0%
GAATTTGACGGTGCAGGCAA+TGG - chr1.3:3173742-3173761 MS.gene26931:CDS 50.0%
GCCAAATGGTGTAGCTGCAT+TGG + chr1.3:3173594-3173613 None:intergenic 50.0%
GGACTAAACTGTATCGGAGG+AGG - chr1.3:3173793-3173812 MS.gene26931:CDS 50.0%
GTGTTTGGCGTTCAATACGG+AGG - chr1.3:3174044-3174063 MS.gene26931:CDS 50.0%
TAGGGTGAACAGTGCAGGTT+CGG - chr1.3:3174002-3174021 MS.gene26931:CDS 50.0%
TCAAGCACTTGCACGTGTTC+TGG - chr1.3:3174180-3174199 MS.gene26931:intron 50.0%
TCAATATGCGGGGTGTGTTG+CGG - chr1.3:3173951-3173970 MS.gene26931:CDS 50.0%
TGAAAGAGTTCCCGGCCAAA+TGG + chr1.3:3173608-3173627 None:intergenic 50.0%
TGTGTGGGCGAACATGTTTG+TGG + chr1.3:3174099-3174118 None:intergenic 50.0%
TGTGTTGCGGACTTGAATGG+TGG - chr1.3:3173964-3173983 MS.gene26931:CDS 50.0%
TTCTGCCAATGTTACCGGTG+GGG + chr1.3:3173821-3173840 None:intergenic 50.0%
! ATTGGATCAGCCGGTAATGG+TGG - chr1.3:3173847-3173866 MS.gene26931:CDS 50.0%
!! CGGACTGGTTGCGAATTTGA+CGG - chr1.3:3173730-3173749 MS.gene26931:CDS 50.0%
!! GGACTTGAATGGTGGATGTC+CGG - chr1.3:3173972-3173991 MS.gene26931:CDS 50.0%
!! GGTGGACTAAACTGTATCGG+AGG - chr1.3:3173790-3173809 MS.gene26931:CDS 50.0%
!!! ACGGAGGAGTTTTGTTGCAC+CGG - chr1.3:3174060-3174079 MS.gene26931:CDS 50.0%
AGGTACCCCACCGGTAACAT+TGG - chr1.3:3173813-3173832 MS.gene26931:CDS 55.0%
CCGGGAACTCTTTCAGGCAA+CGG - chr1.3:3173613-3173632 MS.gene26931:CDS 55.0%
CCGTTGCCTGAAAGAGTTCC+CGG + chr1.3:3173616-3173635 None:intergenic 55.0%
CGGGAACTCTTTCAGGCAAC+GGG - chr1.3:3173614-3173633 MS.gene26931:CDS 55.0%
CTGTTCACCCTAAGCTCTGC+CGG + chr1.3:3173994-3174013 None:intergenic 55.0%
GAGCTTAGGGTGAACAGTGC+AGG - chr1.3:3173997-3174016 MS.gene26931:CDS 55.0%
GCTGCAATTCTCGGTCAAGG+TGG - chr1.3:3173637-3173656 MS.gene26931:CDS 55.0%
GGGAACTCTTTCAGGCAACG+GGG - chr1.3:3173615-3173634 MS.gene26931:CDS 55.0%
GGGTGTGTTGCGGACTTGAA+TGG - chr1.3:3173961-3173980 MS.gene26931:CDS 55.0%
GGTTGCGAATTTGACGGTGC+AGG - chr1.3:3173736-3173755 MS.gene26931:CDS 55.0%
GTCACAGGAGATTGTTCCGG+TGG - chr1.3:3173772-3173791 MS.gene26931:CDS 55.0%
GTTTGACTGCACCATCGGGT+TGG - chr1.3:3173689-3173708 MS.gene26931:CDS 55.0%
TGCAGCTACACCATTTGGCC+GGG - chr1.3:3173595-3173614 MS.gene26931:CDS 55.0%
TGGATGTCCGGCAGAGCTTA+GGG - chr1.3:3173984-3174003 MS.gene26931:CDS 55.0%
! ATCAGCCGGTAATGGTGGCA+AGG - chr1.3:3173852-3173871 MS.gene26931:CDS 55.0%
!!! GGTGGTTTTTTGCTAGCCCC+CGG - chr1.3:3173655-3173674 MS.gene26931:CDS 55.0%
AAGCGTCCTGACCAACCCGA+TGG + chr1.3:3173703-3173722 None:intergenic 60.0%
GGCAACGGGGCTGCAATTCT+CGG - chr1.3:3173628-3173647 MS.gene26931:CDS 60.0%
GGGCGAACATGTTTGTGGCG+TGG + chr1.3:3174094-3174113 None:intergenic 60.0%
GGGGCTGCAATTCTCGGTCA+AGG - chr1.3:3173634-3173653 MS.gene26931:CDS 60.0%
GGTGAACAGTGCAGGTTCGG+TGG - chr1.3:3174005-3174024 MS.gene26931:CDS 60.0%
GTGGATGTCCGGCAGAGCTT+AGG - chr1.3:3173983-3174002 MS.gene26931:CDS 60.0%
TTGTGGCGTGGCATGTTGGC+CGG + chr1.3:3174082-3174101 None:intergenic 60.0%
! GGCGTGTAAGAGCGCGTGTT+TGG - chr1.3:3174029-3174048 MS.gene26931:CDS 60.0%
!! ACTGCACCATCGGGTTGGTC+AGG - chr1.3:3173694-3173713 MS.gene26931:CDS 60.0%
!! ATGGGTGTACGGGCTAGAGG+AGG - chr1.3:3173916-3173935 MS.gene26931:CDS 60.0%
!! GAACAGTGCAGGTTCGGTGG+TGG - chr1.3:3174008-3174027 MS.gene26931:CDS 60.0%
!! GGGTTGGTCAGGACGCTTCT+GGG - chr1.3:3173705-3173724 MS.gene26931:CDS 60.0%
!! TATCGGAGGAGGTACCCCAC+CGG - chr1.3:3173804-3173823 MS.gene26931:CDS 60.0%
GGTCAGGACGCTTCTGGGCT+CGG - chr1.3:3173710-3173729 MS.gene26931:CDS 65.0%
!! CGGGTTGGTCAGGACGCTTC+TGG - chr1.3:3173704-3173723 MS.gene26931:CDS 65.0%
!! GGCATGGGTGTACGGGCTAG+AGG - chr1.3:3173913-3173932 MS.gene26931:CDS 65.0%
!! GTACGGGCTAGAGGAGGCAC+CGG - chr1.3:3173922-3173941 MS.gene26931:CDS 65.0%
GGACGCTTCTGGGCTCGGAC+TGG - chr1.3:3173715-3173734 MS.gene26931:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 3173406 3174245 3173406 ID=MS.gene26931
chr1.3 mRNA 3173406 3174245 3173406 ID=MS.gene26931.t1;Parent=MS.gene26931
chr1.3 exon 3174188 3174245 3174188 ID=MS.gene26931.t1.exon1;Parent=MS.gene26931.t1
chr1.3 CDS 3174188 3174245 3174188 ID=cds.MS.gene26931.t1;Parent=MS.gene26931.t1
chr1.3 exon 3173406 3174097 3173406 ID=MS.gene26931.t1.exon2;Parent=MS.gene26931.t1
chr1.3 CDS 3173406 3174097 3173406 ID=cds.MS.gene26931.t1;Parent=MS.gene26931.t1
Gene Sequence

>MS.gene26931

ATGGCCTTGAATCCAAATCCGAAAACCTTTCTTCTCTTCAACATGTTCCTCTTATTAGGTAAACAACATTTACCTAGTCTTTTTAAAAATCATTTTAATTTTTTTATTTTTATAATTAATAGCTTATGCATGAATATATTTTTTGCAGGCAATTTAGCATCTGCTACGGTGTTTACCATACACAACCAATGCAGCTACACCATTTGGCCGGGAACTCTTTCAGGCAACGGGGCTGCAATTCTCGGTCAAGGTGGTTTTTTGCTAGCCCCCGGTACATCAGTTAGTTTGACTGCACCATCGGGTTGGTCAGGACGCTTCTGGGCTCGGACTGGTTGCGAATTTGACGGTGCAGGCAATGGTAAATGTGTCACAGGAGATTGTTCCGGTGGACTAAACTGTATCGGAGGAGGTACCCCACCGGTAACATTGGCAGAATTCACTATTGGATCAGCCGGTAATGGTGGCAAGGACTTCTATGATGTGAGCTTGGTCGACGGTTACAATGTAGGCATGGGTGTACGGGCTAGAGGAGGCACCGGTGATTGTCAATATGCGGGGTGTGTTGCGGACTTGAATGGTGGATGTCCGGCAGAGCTTAGGGTGAACAGTGCAGGTTCGGTGGTGGCGTGTAAGAGCGCGTGTTTGGCGTTCAATACGGAGGAGTTTTGTTGCACCGGCCAACATGCCACGCCACAAACATGTTCGCCCACACATTATTCCGAGATATTTAAGAAAGCTTGCCCAACTGCTTACAGTTATGCTTATGATGATGCTTCAAGCACTTGCACGTGTTCTGGTTCCGATTACCATATCACGTTTTGCCCCAATGGATCATCATGA
Protein sequence

>MS.gene26931.t1

MALNPNPKTFLLFNMFLLLGNLASATVFTIHNQCSYTIWPGTLSGNGAAILGQGGFLLAPGTSVSLTAPSGWSGRFWARTGCEFDGAGNGKCVTGDCSGGLNCIGGGTPPVTLAEFTIGSAGNGGKDFYDVSLVDGYNVGMGVRARGGTGDCQYAGCVADLNGGCPAELRVNSAGSVVACKSACLAFNTEEFCCTGQHATPQTCSPTHYSEIFKKACPTAYSYAYDDASSTCTCSGSDYHITFCPNGSS