AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24315

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24315.t1 MTR_1g021945 95.984 249 10 0 1 249 1 249 1.37e-165 457
MS.gene24315.t1 MTR_3g111620 74.104 251 62 3 1 249 1 250 3.48e-129 365
MS.gene24315.t1 MTR_8g036215 52.439 246 106 4 1 244 1 237 3.00e-87 259
MS.gene24315.t1 MTR_5g022350 55.785 242 95 6 7 245 11 243 8.20e-85 255
MS.gene24315.t1 MTR_6g079580 52.893 242 102 5 11 245 4 240 1.58e-84 252
MS.gene24315.t1 MTR_4g073720 54.468 235 99 4 12 244 11 239 2.61e-84 255
MS.gene24315.t1 MTR_8g056820 51.779 253 114 5 3 249 1 251 1.40e-83 250
MS.gene24315.t1 MTR_8g107140 53.279 244 104 4 9 246 7 246 2.66e-82 246
MS.gene24315.t1 MTR_8g037890 52.869 244 105 5 9 248 13 250 6.74e-82 248
MS.gene24315.t1 MTR_8g075510 54.098 244 100 6 8 248 13 247 4.63e-81 243
MS.gene24315.t1 MTR_1g025420 55.649 239 94 7 16 244 9 245 6.47e-81 246
MS.gene24315.t1 MTR_1g025420 55.000 240 99 7 11 244 9 245 7.92e-81 243
MS.gene24315.t1 MTR_1g062590 56.410 234 95 6 16 245 12 242 2.21e-80 241
MS.gene24315.t1 MTR_3g114030 56.140 228 92 6 25 246 6 231 2.93e-80 241
MS.gene24315.t1 MTR_8g075550 55.230 239 95 5 19 248 22 257 8.77e-80 242
MS.gene24315.t1 MTR_8g075510 54.167 240 98 6 8 244 13 243 1.72e-79 241
MS.gene24315.t1 MTR_4g073730 52.869 244 105 6 10 245 7 248 2.90e-77 235
MS.gene24315.t1 MTR_4g073730 52.869 244 105 6 10 245 7 248 5.59e-77 236
MS.gene24315.t1 MTR_2g067980 51.626 246 110 6 7 245 4 247 3.38e-76 249
MS.gene24315.t1 MTR_5g022310 49.801 251 113 6 10 249 7 255 4.30e-76 231
MS.gene24315.t1 MTR_1g062660 51.837 245 110 7 6 246 3 243 4.73e-76 231
MS.gene24315.t1 MTR_5g022310 49.801 251 113 6 10 249 7 255 8.39e-76 232
MS.gene24315.t1 MTR_1g062340 52.263 243 108 7 8 246 5 243 1.22e-75 229
MS.gene24315.t1 MTR_1g062350 52.766 235 104 6 16 246 12 243 1.42e-75 229
MS.gene24315.t1 MTR_5g059200 52.466 223 98 2 24 246 27 241 1.62e-75 231
MS.gene24315.t1 MTR_2g069660 53.750 240 104 6 10 245 7 243 2.86e-75 229
MS.gene24315.t1 MTR_7g102380 53.363 223 97 6 28 246 23 242 6.75e-75 228
MS.gene24315.t1 MTR_1g062370 51.915 235 106 6 16 246 12 243 2.47e-74 226
MS.gene24315.t1 MTR_2g068030 50.679 221 103 5 28 244 25 243 3.62e-74 226
MS.gene24315.t1 MTR_1g062630 53.191 235 103 6 16 246 12 243 6.97e-74 226
MS.gene24315.t1 MTR_7g062610 48.444 225 114 2 22 245 19 242 4.84e-70 215
MS.gene24315.t1 MTR_3g068015 45.749 247 123 4 9 245 3 248 1.09e-69 214
MS.gene24315.t1 MTR_6g009480 45.528 246 125 7 9 247 11 254 1.59e-67 210
MS.gene24315.t1 MTR_2g068655 46.696 227 115 5 23 245 28 252 2.07e-65 206
MS.gene24315.t1 MTR_1g062690 46.383 235 97 5 16 247 12 220 1.44e-61 193
MS.gene24315.t1 MTR_4g063630 42.500 240 122 8 15 244 18 251 6.19e-57 182
MS.gene24315.t1 MTR_5g010635 43.231 229 106 8 23 248 21 228 2.24e-53 172
MS.gene24315.t1 MTR_5g010640 39.919 248 122 8 8 245 6 236 4.31e-49 161
MS.gene24315.t1 MTR_8g096900 39.662 237 120 7 11 245 33 248 4.01e-48 159
MS.gene24315.t1 MTR_2g067990 41.818 220 100 8 28 245 29 222 2.55e-44 159
MS.gene24315.t1 MTR_8g089020 51.145 131 59 1 107 237 31 156 1.62e-43 145
MS.gene24315.t1 MTR_5g022350 53.595 153 62 5 7 156 76 222 6.13e-43 145
MS.gene24315.t1 MTR_2g067970 43.915 189 95 7 68 249 2 186 8.45e-40 146
MS.gene24315.t1 MTR_5g023850 35.081 248 115 9 10 249 11 220 8.92e-38 132
MS.gene24315.t1 MTR_2g063150 31.799 239 150 7 9 238 11 245 4.09e-33 121
MS.gene24315.t1 MTR_7g076360 35.945 217 73 5 23 237 5 157 2.45e-31 114
MS.gene24315.t1 MTR_8g096910 45.113 133 63 3 10 141 6 129 1.05e-29 110
MS.gene24315.t1 MTR_1g062390 32.377 244 142 7 11 245 9 238 1.20e-29 111
MS.gene24315.t1 MTR_8g096920 32.143 224 85 6 23 245 16 173 1.54e-26 101
MS.gene24315.t1 MTR_3g081550 43.750 96 49 3 109 201 16 109 5.96e-14 66.6
MS.gene24315.t1 MTR_1g062640 34.839 155 76 7 21 166 8 146 1.19e-12 64.3
MS.gene24315.t1 MTR_5g068670 47.561 82 38 3 63 143 12 89 7.65e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24315.t1 AT1G75030 68.333 240 72 3 11 248 9 246 6.13e-116 332
MS.gene24315.t1 AT1G75050 68.067 238 70 4 11 245 9 243 2.65e-112 323
MS.gene24315.t1 AT1G75040 64.255 235 80 3 11 245 9 239 2.63e-106 307
MS.gene24315.t1 AT1G19320 61.088 239 87 4 11 244 9 246 1.38e-96 283
MS.gene24315.t1 AT4G38660 58.091 241 93 4 11 249 15 249 5.72e-91 272
MS.gene24315.t1 AT4G38660 59.149 235 86 5 17 249 1 227 6.08e-89 266
MS.gene24315.t1 AT1G73620 55.066 227 95 3 23 246 39 261 2.58e-84 252
MS.gene24315.t1 AT4G24180 55.918 245 96 7 9 246 18 257 4.30e-83 249
MS.gene24315.t1 AT4G24180 55.918 245 96 7 9 246 18 257 1.01e-82 250
MS.gene24315.t1 AT1G77700 52.282 241 104 4 6 244 40 271 2.44e-82 249
MS.gene24315.t1 AT1G77700 52.282 241 104 4 6 244 40 271 3.00e-82 249
MS.gene24315.t1 AT4G24180 54.365 252 104 7 2 246 5 252 6.73e-82 246
MS.gene24315.t1 AT4G24180 54.365 252 104 7 2 246 5 252 1.21e-81 247
MS.gene24315.t1 AT1G75800 54.150 253 103 8 1 245 1 248 4.87e-81 246
MS.gene24315.t1 AT1G18250 54.185 227 97 3 23 246 18 240 5.78e-81 243
MS.gene24315.t1 AT1G77700 54.299 221 93 2 24 244 87 299 9.99e-81 246
MS.gene24315.t1 AT1G18250 53.304 227 99 3 23 246 19 241 5.17e-80 241
MS.gene24315.t1 AT5G24620 54.237 236 99 4 18 245 17 251 1.19e-79 246
MS.gene24315.t1 AT5G24620 54.237 236 99 4 18 245 72 306 2.95e-79 246
MS.gene24315.t1 AT1G20030 56.828 227 88 6 28 246 5 229 4.55e-79 240
MS.gene24315.t1 AT1G20030 56.828 227 88 6 28 246 22 246 5.86e-79 241
MS.gene24315.t1 AT5G24620 54.237 236 99 4 18 245 93 327 6.77e-79 246
MS.gene24315.t1 AT2G17860 56.048 248 96 8 10 248 9 252 1.46e-78 237
MS.gene24315.t1 AT4G36010 54.936 233 93 6 24 246 21 251 6.54e-76 232
MS.gene24315.t1 AT4G36010 54.936 233 93 6 24 246 21 251 6.54e-76 232
MS.gene24315.t1 AT4G24180 55.022 229 91 7 9 230 18 241 6.48e-74 228
MS.gene24315.t1 AT4G24180 53.390 236 99 7 2 230 5 236 8.05e-73 225
MS.gene24315.t1 AT4G38670 50.204 245 111 8 10 245 5 247 2.60e-70 217
MS.gene24315.t1 AT4G38670 50.204 245 111 8 10 245 5 247 2.60e-70 217
MS.gene24315.t1 AT5G40020 45.082 244 125 5 12 247 8 250 9.72e-69 213
MS.gene24315.t1 AT4G38670 52.889 225 97 7 28 245 9 231 1.00e-68 213
MS.gene24315.t1 AT5G02140 46.250 240 126 3 8 245 3 241 1.06e-66 207
MS.gene24315.t1 AT5G02140 46.091 243 128 3 8 248 3 244 2.12e-66 207
MS.gene24315.t1 AT5G38280 45.968 248 122 8 10 249 11 254 1.91e-61 204
MS.gene24315.t1 AT5G38280 45.968 248 122 8 10 249 11 254 2.38e-61 204
MS.gene24315.t1 AT4G18253 41.870 246 131 5 7 249 6 242 2.60e-56 180
MS.gene24315.t1 AT2G28790 43.277 238 125 6 16 244 12 248 3.21e-56 180
MS.gene24315.t1 AT4G11650 43.913 230 108 6 17 245 14 223 3.22e-56 180
MS.gene24315.t1 AT2G28790 43.750 240 121 7 16 244 37 273 4.85e-56 181
MS.gene24315.t1 AT4G36000 56.667 150 56 4 101 249 1 142 7.44e-50 162
MS.gene24315.t1 AT4G36000 56.667 150 56 4 101 249 1 142 7.44e-50 162
MS.gene24315.t1 AT1G70250 40.948 232 120 7 28 249 147 371 4.13e-48 169
MS.gene24315.t1 AT4G18250 40.664 241 133 6 10 247 41 274 5.79e-44 157
MS.gene24315.t1 AT5G24620 55.000 120 47 2 133 245 15 134 9.86e-36 129
MS.gene24315.t1 AT2G24810 64.935 77 27 0 168 244 116 192 1.29e-27 105

Find 96 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGTTGGTCAGGACGCTTC+TGG 0.127184 1.1:-2522327 MS.gene24315:CDS
ATTTGGCCGGGAACTCTTTC+AGG 0.233483 1.1:-2522424 MS.gene24315:CDS
TTCAACATGTTCCTCTTATT+AGG 0.273557 1.1:-2522589 MS.gene24315:intron
CGGGAACTCTTTCAGGCAAC+GGG 0.293795 1.1:-2522417 MS.gene24315:CDS
TCAAGCACTTGCACGTGTTC+TGG 0.293907 1.1:-2521851 MS.gene24315:CDS
CATTGGGGCAAAACGTGATA+TGG 0.343492 1.1:+2521819 None:intergenic
GGTCAGGACGCTTCTGGGCT+CGG 0.343568 1.1:-2522321 MS.gene24315:CDS
GAAGTCCTTGCCACCATTAC+CGG 0.344792 1.1:+2522174 None:intergenic
ACATTGGCAGAATTCACTAT+TGG 0.360199 1.1:-2522202 MS.gene24315:CDS
CCGTTGCCTGAAAGAGTTCC+CGG 0.373895 1.1:+2522418 None:intergenic
GTGAATTCTGCCAATGTTAC+CGG 0.381859 1.1:+2522208 None:intergenic
GGGTTGGTCAGGACGCTTCT+GGG 0.383926 1.1:-2522326 MS.gene24315:CDS
GGCAACGGGGCTGCAATTCT+CGG 0.400439 1.1:-2522403 MS.gene24315:CDS
GTGGATGTCCGGCAGAGCTT+AGG 0.403966 1.1:-2522048 MS.gene24315:CDS
ACCAATGCAGCTACACCATT+TGG 0.411415 1.1:-2522441 MS.gene24315:CDS
GGGTGTGTTGCGGACTTGAA+TGG 0.414444 1.1:-2522070 MS.gene24315:CDS
GAACATGTTGAAGAGAAGAA+AGG 0.426997 1.1:+2522600 None:intergenic
GGCGTGTAAGAGTGCGTGTT+TGG 0.437864 1.1:-2522002 MS.gene24315:CDS
GGACGCTTCTGGGCTCGGAC+TGG 0.446805 1.1:-2522316 MS.gene24315:CDS
ACTGCACCATCGGGTTGGTC+AGG 0.452166 1.1:-2522337 MS.gene24315:CDS
TATGATCATGATGATCCATT+GGG 0.460244 1.1:+2521803 None:intergenic
GCAAGCTTTCTTAAATATCT+CGG 0.462492 1.1:+2521907 None:intergenic
GCAAAACGTGATATGGTAAT+CGG 0.467360 1.1:+2521826 None:intergenic
TGGATGTCCGGCAGAGCTTA+GGG 0.471726 1.1:-2522047 MS.gene24315:CDS
ACAATGTAGGCATGGGTGTA+CGG 0.477021 1.1:-2522126 MS.gene24315:CDS
ACCGGTGATTGTCAATATGC+GGG 0.477080 1.1:-2522091 MS.gene24315:CDS
CCGGGAACTCTTTCAGGCAA+CGG 0.481046 1.1:-2522418 MS.gene24315:CDS
AATGTTGTTTACCTAATAAG+AGG 0.483808 1.1:+2522578 None:intergenic
TAGGGTGAACAGTGCAGGTT+CGG 0.484236 1.1:-2522029 MS.gene24315:CDS
CAATGTAGGCATGGGTGTAC+GGG 0.485572 1.1:-2522125 MS.gene24315:CDS
TGTGTCACAGGAGATTGTTC+CGG 0.487338 1.1:-2522262 MS.gene24315:CDS
CTATGATCATGATGATCCAT+TGG 0.489037 1.1:+2521802 None:intergenic
AGTTAGTTTGACTGCACCAT+CGG 0.493248 1.1:-2522347 MS.gene24315:CDS
ACTATTGGATCAGCCGGTAA+TGG 0.496770 1.1:-2522187 MS.gene24315:CDS
TTGTGGCGTGGCATGTTGGC+CGG 0.499950 1.1:+2521952 None:intergenic
TGCGTGTTTGGCGTTCAATA+CGG 0.504883 1.1:-2521990 MS.gene24315:CDS
TGAAAGAGTTCCCGGCCAAA+TGG 0.505042 1.1:+2522426 None:intergenic
GAGCTTAGGGTGAACAGTGC+AGG 0.505667 1.1:-2522034 MS.gene24315:CDS
CTGTTCACCCTAAGCTCTGC+CGG 0.506624 1.1:+2522040 None:intergenic
CGGACTGGTTGCGAATTTGA+CGG 0.511038 1.1:-2522301 MS.gene24315:CDS
GTTAGTTTGACTGCACCATC+GGG 0.514040 1.1:-2522346 MS.gene24315:CDS
TAAGCATAACTGTAAGCAGT+TGG 0.515449 1.1:+2521884 None:intergenic
GAACAGTGCAGGTTCGGTGG+TGG 0.517897 1.1:-2522023 MS.gene24315:CDS
GGCAATGGTAAATGTGTCAC+AGG 0.521889 1.1:-2522274 MS.gene24315:CDS
AGTCAAACTAACTGATGTAC+CGG 0.522716 1.1:+2522357 None:intergenic
ATGCAGCTACACCATTTGGC+CGG 0.527935 1.1:-2522437 MS.gene24315:CDS
AAGCATAACTGTAAGCAGTT+GGG 0.532279 1.1:+2521885 None:intergenic
CGACGGTTACAATGTAGGCA+TGG 0.532942 1.1:-2522134 MS.gene24315:CDS
GAATTCACTATTGGATCAGC+CGG 0.534190 1.1:-2522193 MS.gene24315:CDS
GGACTTGAATGGTGGATGTC+CGG 0.536818 1.1:-2522059 MS.gene24315:CDS
GTAGCTGCATTGGTTGTGTA+TGG 0.541554 1.1:+2522450 None:intergenic
GGACTTCTATGATGTGAGCT+TGG 0.548719 1.1:-2522158 MS.gene24315:CDS
GCCAAATGGTGTAGCTGCAT+TGG 0.549645 1.1:+2522440 None:intergenic
GGTTGCGAATTTGACGGTGC+AGG 0.549983 1.1:-2522295 MS.gene24315:CDS
TCCGATACAGTTTAGTCCAC+CGG 0.550929 1.1:+2522243 None:intergenic
TGCAGCTACACCATTTGGCC+GGG 0.554309 1.1:-2522436 MS.gene24315:CDS
GAATTTGACGGTGCAGGCAA+TGG 0.556474 1.1:-2522289 MS.gene24315:CDS
TTGGTCGACGGTTACAATGT+AGG 0.559348 1.1:-2522139 MS.gene24315:CDS
CCCCGCATATTGACAATCAC+CGG 0.568073 1.1:+2522090 None:intergenic
GACGGTTACAATGTAGGCAT+GGG 0.570839 1.1:-2522133 MS.gene24315:CDS
AAATATCTCGGAATAATGTG+TGG 0.571915 1.1:+2521919 None:intergenic
ATGTTTGTGGCGTGGCATGT+TGG 0.573358 1.1:+2521948 None:intergenic
CACCGGTGATTGTCAATATG+CGG 0.583056 1.1:-2522092 MS.gene24315:CDS
TCCGGTGGACTAAACTGTAT+CGG 0.584625 1.1:-2522244 MS.gene24315:CDS
GTTTGACTGCACCATCGGGT+TGG 0.589766 1.1:-2522342 MS.gene24315:CDS
TCAATATGCGGGGTGTGTTG+CGG 0.592968 1.1:-2522080 MS.gene24315:CDS
ATGGGTGTACGGGCTAGAGG+AGG 0.595042 1.1:-2522115 MS.gene24315:CDS
GTCAAACTAACTGATGTACC+GGG 0.599721 1.1:+2522358 None:intergenic
GTACGGGCTAGAGGAGGCAC+CGG 0.600853 1.1:-2522109 MS.gene24315:CDS
GGGGCTGCAATTCTCGGTCA+AGG 0.600916 1.1:-2522397 MS.gene24315:CDS
GGCATGGGTGTACGGGCTAG+AGG 0.603450 1.1:-2522118 MS.gene24315:CDS
TGTGTTGCGGACTTGAATGG+TGG 0.603671 1.1:-2522067 MS.gene24315:CDS
AGGTACCCCACCGGTAACAT+TGG 0.604332 1.1:-2522218 MS.gene24315:CDS
GGTGAACAGTGCAGGTTCGG+TGG 0.604516 1.1:-2522026 MS.gene24315:CDS
ATTGGATCAGCCGGTAATGG+TGG 0.605464 1.1:-2522184 MS.gene24315:CDS
AGGCAATTTAGCATCTGCTA+CGG 0.606331 1.1:-2522479 MS.gene24315:CDS
AATTCTGCCAATGTTACCGG+TGG 0.609607 1.1:+2522211 None:intergenic
ATCAGCCGGTAATGGTGGCA+AGG 0.611295 1.1:-2522179 MS.gene24315:CDS
AATATCTCGGAATAATGTGT+GGG 0.612361 1.1:+2521920 None:intergenic
TATGATGTGAGCTTGGTCGA+CGG 0.617152 1.1:-2522151 MS.gene24315:CDS
TTCTGCCAATGTTACCGGTG+GGG 0.629018 1.1:+2522213 None:intergenic
GTCACAGGAGATTGTTCCGG+TGG 0.632624 1.1:-2522259 MS.gene24315:CDS
ATTCTGCCAATGTTACCGGT+GGG 0.634739 1.1:+2522212 None:intergenic
TGTGTGGGCGAACATGTTTG+TGG 0.637601 1.1:+2521935 None:intergenic
GGACTAAACTGTATCGGAGG+AGG 0.643072 1.1:-2522238 MS.gene24315:CDS
GGGCGAACATGTTTGTGGCG+TGG 0.644582 1.1:+2521940 None:intergenic
AAGCGTCCTGACCAACCCGA+TGG 0.645342 1.1:+2522331 None:intergenic
GGGAACTCTTTCAGGCAACG+GGG 0.664283 1.1:-2522416 MS.gene24315:CDS
CCGGTGATTGTCAATATGCG+GGG 0.674634 1.1:-2522090 MS.gene24315:CDS
GCTGCAATTCTCGGTCAAGG+TGG 0.678285 1.1:-2522394 MS.gene24315:CDS
GTGTTTGGCGTTCAATACGG+AGG 0.681169 1.1:-2521987 MS.gene24315:CDS
TCAAACTAACTGATGTACCG+GGG 0.689044 1.1:+2522359 None:intergenic
TATCGGAGGAGGTACCCCAC+CGG 0.691570 1.1:-2522227 MS.gene24315:CDS
GGTGGACTAAACTGTATCGG+AGG 0.699134 1.1:-2522241 MS.gene24315:CDS
ATGATCATGATGATCCATTG+GGG 0.705650 1.1:+2521804 None:intergenic
CAAACTAACTGATGTACCGG+GGG 0.713886 1.1:+2522360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGATTTTTAAAAAGACT+AGG + chr1.1:2521883-2521902 None:intergenic 15.0%
!! AATGTTGTTTACCTAATAAG+AGG + chr1.1:2521858-2521877 None:intergenic 25.0%
!!! TGCATGAATATATTTTTTGC+AGG - chr1.1:2521934-2521953 MS.gene24315:CDS 25.0%
AAATATCTCGGAATAATGTG+TGG + chr1.1:2522517-2522536 None:intergenic 30.0%
AATATCTCGGAATAATGTGT+GGG + chr1.1:2522516-2522535 None:intergenic 30.0%
GCAAGCTTTCTTAAATATCT+CGG + chr1.1:2522529-2522548 None:intergenic 30.0%
TTCAACATGTTCCTCTTATT+AGG - chr1.1:2521844-2521863 MS.gene24315:CDS 30.0%
! TTGAAGAGAAGAAAGGTTTT+CGG + chr1.1:2521829-2521848 None:intergenic 30.0%
AAGCATAACTGTAAGCAGTT+GGG + chr1.1:2522551-2522570 None:intergenic 35.0%
ACATTGGCAGAATTCACTAT+TGG - chr1.1:2522231-2522250 MS.gene24315:CDS 35.0%
AGTCAAACTAACTGATGTAC+CGG + chr1.1:2522079-2522098 None:intergenic 35.0%
GAACATGTTGAAGAGAAGAA+AGG + chr1.1:2521836-2521855 None:intergenic 35.0%
GCAAAACGTGATATGGTAAT+CGG + chr1.1:2522610-2522629 None:intergenic 35.0%
TAAGCATAACTGTAAGCAGT+TGG + chr1.1:2522552-2522571 None:intergenic 35.0%
! AGAAGAAAGGTTTTCGGATT+TGG + chr1.1:2521823-2521842 None:intergenic 35.0%
AGGCAATTTAGCATCTGCTA+CGG - chr1.1:2521954-2521973 MS.gene24315:CDS 40.0%
GAATTCACTATTGGATCAGC+CGG - chr1.1:2522240-2522259 MS.gene24315:CDS 40.0%
GTCAAACTAACTGATGTACC+GGG + chr1.1:2522078-2522097 None:intergenic 40.0%
GTGAATTCTGCCAATGTTAC+CGG + chr1.1:2522228-2522247 None:intergenic 40.0%
TCAAACTAACTGATGTACCG+GGG + chr1.1:2522077-2522096 None:intergenic 40.0%
! AGTTAGTTTGACTGCACCAT+CGG - chr1.1:2522086-2522105 MS.gene24315:CDS 40.0%
! GGTTTTCGGATTTGGATTCA+AGG + chr1.1:2521815-2521834 None:intergenic 40.0%
AATTCTGCCAATGTTACCGG+TGG + chr1.1:2522225-2522244 None:intergenic 45.0%
ACAATGTAGGCATGGGTGTA+CGG - chr1.1:2522307-2522326 MS.gene24315:CDS 45.0%
ACCAATGCAGCTACACCATT+TGG - chr1.1:2521992-2522011 MS.gene24315:CDS 45.0%
ACCGGTGATTGTCAATATGC+GGG - chr1.1:2522342-2522361 MS.gene24315:CDS 45.0%
ACTATTGGATCAGCCGGTAA+TGG - chr1.1:2522246-2522265 MS.gene24315:CDS 45.0%
ATTCTGCCAATGTTACCGGT+GGG + chr1.1:2522224-2522243 None:intergenic 45.0%
CAAACTAACTGATGTACCGG+GGG + chr1.1:2522076-2522095 None:intergenic 45.0%
CACCGGTGATTGTCAATATG+CGG - chr1.1:2522341-2522360 MS.gene24315:CDS 45.0%
CATTGGGGCAAAACGTGATA+TGG + chr1.1:2522617-2522636 None:intergenic 45.0%
GACGGTTACAATGTAGGCAT+GGG - chr1.1:2522300-2522319 MS.gene24315:CDS 45.0%
GGACTTCTATGATGTGAGCT+TGG - chr1.1:2522275-2522294 MS.gene24315:CDS 45.0%
GGCAATGGTAAATGTGTCAC+AGG - chr1.1:2522159-2522178 MS.gene24315:CDS 45.0%
TATGATGTGAGCTTGGTCGA+CGG - chr1.1:2522282-2522301 MS.gene24315:CDS 45.0%
TCCGATACAGTTTAGTCCAC+CGG + chr1.1:2522193-2522212 None:intergenic 45.0%
TGCGTGTTTGGCGTTCAATA+CGG - chr1.1:2522443-2522462 MS.gene24315:CDS 45.0%
TGTGTCACAGGAGATTGTTC+CGG - chr1.1:2522171-2522190 MS.gene24315:CDS 45.0%
TTGGTCGACGGTTACAATGT+AGG - chr1.1:2522294-2522313 MS.gene24315:CDS 45.0%
! CATATCACGTTTTGCCCCAA+TGG - chr1.1:2522615-2522634 MS.gene24315:CDS 45.0%
! GTTAGTTTGACTGCACCATC+GGG - chr1.1:2522087-2522106 MS.gene24315:CDS 45.0%
!! GTAGCTGCATTGGTTGTGTA+TGG + chr1.1:2521986-2522005 None:intergenic 45.0%
!! TCCGGTGGACTAAACTGTAT+CGG - chr1.1:2522189-2522208 MS.gene24315:CDS 45.0%
ATGCAGCTACACCATTTGGC+CGG - chr1.1:2521996-2522015 MS.gene24315:CDS 50.0%
ATGTTTGTGGCGTGGCATGT+TGG + chr1.1:2522488-2522507 None:intergenic 50.0%
ATTTGGCCGGGAACTCTTTC+AGG - chr1.1:2522009-2522028 MS.gene24315:CDS 50.0%
CAATGTAGGCATGGGTGTAC+GGG - chr1.1:2522308-2522327 MS.gene24315:CDS 50.0%
CCCCGCATATTGACAATCAC+CGG + chr1.1:2522346-2522365 None:intergenic 50.0%
CCGGTGATTGTCAATATGCG+GGG - chr1.1:2522343-2522362 MS.gene24315:CDS 50.0%
CGACGGTTACAATGTAGGCA+TGG - chr1.1:2522299-2522318 MS.gene24315:CDS 50.0%
GAAGTCCTTGCCACCATTAC+CGG + chr1.1:2522262-2522281 None:intergenic 50.0%
GAATTTGACGGTGCAGGCAA+TGG - chr1.1:2522144-2522163 MS.gene24315:CDS 50.0%
GCCAAATGGTGTAGCTGCAT+TGG + chr1.1:2521996-2522015 None:intergenic 50.0%
GGACTAAACTGTATCGGAGG+AGG - chr1.1:2522195-2522214 MS.gene24315:CDS 50.0%
GTGTTTGGCGTTCAATACGG+AGG - chr1.1:2522446-2522465 MS.gene24315:CDS 50.0%
TAGGGTGAACAGTGCAGGTT+CGG - chr1.1:2522404-2522423 MS.gene24315:CDS 50.0%
TCAAGCACTTGCACGTGTTC+TGG - chr1.1:2522582-2522601 MS.gene24315:intron 50.0%
TCAATATGCGGGGTGTGTTG+CGG - chr1.1:2522353-2522372 MS.gene24315:CDS 50.0%
TGAAAGAGTTCCCGGCCAAA+TGG + chr1.1:2522010-2522029 None:intergenic 50.0%
TGTGTGGGCGAACATGTTTG+TGG + chr1.1:2522501-2522520 None:intergenic 50.0%
TGTGTTGCGGACTTGAATGG+TGG - chr1.1:2522366-2522385 MS.gene24315:CDS 50.0%
TTCTGCCAATGTTACCGGTG+GGG + chr1.1:2522223-2522242 None:intergenic 50.0%
! ATTGGATCAGCCGGTAATGG+TGG - chr1.1:2522249-2522268 MS.gene24315:CDS 50.0%
!! CGGACTGGTTGCGAATTTGA+CGG - chr1.1:2522132-2522151 MS.gene24315:CDS 50.0%
!! GGACTTGAATGGTGGATGTC+CGG - chr1.1:2522374-2522393 MS.gene24315:CDS 50.0%
!! GGTGGACTAAACTGTATCGG+AGG - chr1.1:2522192-2522211 MS.gene24315:CDS 50.0%
!!! ACGGAGGAGTTTTGTTGCAC+CGG - chr1.1:2522462-2522481 MS.gene24315:CDS 50.0%
AGGTACCCCACCGGTAACAT+TGG - chr1.1:2522215-2522234 MS.gene24315:CDS 55.0%
CCGGGAACTCTTTCAGGCAA+CGG - chr1.1:2522015-2522034 MS.gene24315:CDS 55.0%
CCGTTGCCTGAAAGAGTTCC+CGG + chr1.1:2522018-2522037 None:intergenic 55.0%
CGGGAACTCTTTCAGGCAAC+GGG - chr1.1:2522016-2522035 MS.gene24315:CDS 55.0%
CTGTTCACCCTAAGCTCTGC+CGG + chr1.1:2522396-2522415 None:intergenic 55.0%
GAGCTTAGGGTGAACAGTGC+AGG - chr1.1:2522399-2522418 MS.gene24315:CDS 55.0%
GCTGCAATTCTCGGTCAAGG+TGG - chr1.1:2522039-2522058 MS.gene24315:CDS 55.0%
GGGAACTCTTTCAGGCAACG+GGG - chr1.1:2522017-2522036 MS.gene24315:CDS 55.0%
GGGTGTGTTGCGGACTTGAA+TGG - chr1.1:2522363-2522382 MS.gene24315:CDS 55.0%
GGTTGCGAATTTGACGGTGC+AGG - chr1.1:2522138-2522157 MS.gene24315:CDS 55.0%
GTCACAGGAGATTGTTCCGG+TGG - chr1.1:2522174-2522193 MS.gene24315:CDS 55.0%
GTTTGACTGCACCATCGGGT+TGG - chr1.1:2522091-2522110 MS.gene24315:CDS 55.0%
TGCAGCTACACCATTTGGCC+GGG - chr1.1:2521997-2522016 MS.gene24315:CDS 55.0%
TGGATGTCCGGCAGAGCTTA+GGG - chr1.1:2522386-2522405 MS.gene24315:CDS 55.0%
! ATCAGCCGGTAATGGTGGCA+AGG - chr1.1:2522254-2522273 MS.gene24315:CDS 55.0%
! GGCGTGTAAGAGTGCGTGTT+TGG - chr1.1:2522431-2522450 MS.gene24315:CDS 55.0%
!!! GGTGGTTTTTTGCTAGCCCC+CGG - chr1.1:2522057-2522076 MS.gene24315:CDS 55.0%
AAGCGTCCTGACCAACCCGA+TGG + chr1.1:2522105-2522124 None:intergenic 60.0%
GGCAACGGGGCTGCAATTCT+CGG - chr1.1:2522030-2522049 MS.gene24315:CDS 60.0%
GGGCGAACATGTTTGTGGCG+TGG + chr1.1:2522496-2522515 None:intergenic 60.0%
GGGGCTGCAATTCTCGGTCA+AGG - chr1.1:2522036-2522055 MS.gene24315:CDS 60.0%
GGTGAACAGTGCAGGTTCGG+TGG - chr1.1:2522407-2522426 MS.gene24315:CDS 60.0%
GTGGATGTCCGGCAGAGCTT+AGG - chr1.1:2522385-2522404 MS.gene24315:CDS 60.0%
TTGTGGCGTGGCATGTTGGC+CGG + chr1.1:2522484-2522503 None:intergenic 60.0%
!! ACTGCACCATCGGGTTGGTC+AGG - chr1.1:2522096-2522115 MS.gene24315:CDS 60.0%
!! ATGGGTGTACGGGCTAGAGG+AGG - chr1.1:2522318-2522337 MS.gene24315:CDS 60.0%
!! GAACAGTGCAGGTTCGGTGG+TGG - chr1.1:2522410-2522429 MS.gene24315:CDS 60.0%
!! GGGTTGGTCAGGACGCTTCT+GGG - chr1.1:2522107-2522126 MS.gene24315:CDS 60.0%
!! TATCGGAGGAGGTACCCCAC+CGG - chr1.1:2522206-2522225 MS.gene24315:CDS 60.0%
GGTCAGGACGCTTCTGGGCT+CGG - chr1.1:2522112-2522131 MS.gene24315:CDS 65.0%
!! CGGGTTGGTCAGGACGCTTC+TGG - chr1.1:2522106-2522125 MS.gene24315:CDS 65.0%
!! GGCATGGGTGTACGGGCTAG+AGG - chr1.1:2522315-2522334 MS.gene24315:CDS 65.0%
!! GTACGGGCTAGAGGAGGCAC+CGG - chr1.1:2522324-2522343 MS.gene24315:CDS 65.0%
GGACGCTTCTGGGCTCGGAC+TGG - chr1.1:2522117-2522136 MS.gene24315:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 2521808 2522647 2521808 ID=MS.gene24315
chr1.1 mRNA 2521808 2522647 2521808 ID=MS.gene24315.t1;Parent=MS.gene24315
chr1.1 exon 2522590 2522647 2522590 ID=MS.gene24315.t1.exon1;Parent=MS.gene24315.t1
chr1.1 CDS 2522590 2522647 2522590 ID=cds.MS.gene24315.t1;Parent=MS.gene24315.t1
chr1.1 exon 2521808 2522499 2521808 ID=MS.gene24315.t1.exon2;Parent=MS.gene24315.t1
chr1.1 CDS 2521808 2522499 2521808 ID=cds.MS.gene24315.t1;Parent=MS.gene24315.t1
Gene Sequence

>MS.gene24315

ATGGCCTTGAATCCAAATCCGAAAACCTTTCTTCTCTTCAACATGTTCCTCTTATTAGGTAAACAACATTTACCTAGTCTTTTTAAAAATCATTTTAATTTTTTTATTTTTATAATTAATAGCTTATGCATGAATATATTTTTTGCAGGCAATTTAGCATCTGCTACGGTGTTTACCATACACAACCAATGCAGCTACACCATTTGGCCGGGAACTCTTTCAGGCAACGGGGCTGCAATTCTCGGTCAAGGTGGTTTTTTGCTAGCCCCCGGTACATCAGTTAGTTTGACTGCACCATCGGGTTGGTCAGGACGCTTCTGGGCTCGGACTGGTTGCGAATTTGACGGTGCAGGCAATGGTAAATGTGTCACAGGAGATTGTTCCGGTGGACTAAACTGTATCGGAGGAGGTACCCCACCGGTAACATTGGCAGAATTCACTATTGGATCAGCCGGTAATGGTGGCAAGGACTTCTATGATGTGAGCTTGGTCGACGGTTACAATGTAGGCATGGGTGTACGGGCTAGAGGAGGCACCGGTGATTGTCAATATGCGGGGTGTGTTGCGGACTTGAATGGTGGATGTCCGGCAGAGCTTAGGGTGAACAGTGCAGGTTCGGTGGTGGCGTGTAAGAGTGCGTGTTTGGCGTTCAATACGGAGGAGTTTTGTTGCACCGGCCAACATGCCACGCCACAAACATGTTCGCCCACACATTATTCCGAGATATTTAAGAAAGCTTGCCCAACTGCTTACAGTTATGCTTATGATGATGCTTCAAGCACTTGCACGTGTTCTGGTTCCGATTACCATATCACGTTTTGCCCCAATGGATCATCATGA
Protein sequence

>MS.gene24315.t1

MALNPNPKTFLLFNMFLLLGNLASATVFTIHNQCSYTIWPGTLSGNGAAILGQGGFLLAPGTSVSLTAPSGWSGRFWARTGCEFDGAGNGKCVTGDCSGGLNCIGGGTPPVTLAEFTIGSAGNGGKDFYDVSLVDGYNVGMGVRARGGTGDCQYAGCVADLNGGCPAELRVNSAGSVVACKSACLAFNTEEFCCTGQHATPQTCSPTHYSEIFKKACPTAYSYAYDDASSTCTCSGSDYHITFCPNGSS