Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70582.t1 | XP_013461062.1 | 92.2 | 526 | 33 | 2 | 3 | 524 | 97 | 618 | 1.60E-279 | 971.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70582.t1 | Q9SU72 | 41.2 | 546 | 251 | 12 | 12 | 519 | 100 | 613 | 1.3e-104 | 381.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70582.t1 | A0A072V056 | 92.2 | 526 | 33 | 2 | 3 | 524 | 97 | 618 | 1.2e-279 | 971.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70582 | MS.gene074397 | PPI |
| MS.gene70582 | MS.gene044112 | PPI |
| MS.gene70582 | MS.gene022252 | PPI |
| MS.gene70582 | MS.gene38408 | PPI |
| MS.gene70582 | MS.gene062716 | PPI |
| MS.gene70582 | MS.gene25909 | PPI |
| MS.gene70582 | MS.gene014545 | PPI |
| MS.gene70582 | MS.gene24315 | PPI |
| MS.gene42360 | MS.gene70582 | PPI |
| MS.gene38404 | MS.gene70582 | PPI |
| MS.gene70582 | MS.gene26931 | PPI |
| MS.gene38414 | MS.gene70582 | PPI |
| MS.gene38392 | MS.gene70582 | PPI |
| MS.gene70582 | MS.gene69123 | PPI |
| MS.gene25879 | MS.gene70582 | PPI |
| MS.gene70582 | MS.gene27345 | PPI |
| MS.gene38399 | MS.gene70582 | PPI |
| MS.gene70582 | MS.gene022225 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70582.t1 | MTR_3g078633 | 92.205 | 526 | 33 | 2 | 3 | 524 | 97 | 618 | 0.0 | 1008 |
| MS.gene70582.t1 | MTR_3g078633 | 92.039 | 515 | 33 | 2 | 14 | 524 | 36 | 546 | 0.0 | 983 |
| MS.gene70582.t1 | MTR_3g079340 | 52.453 | 530 | 229 | 10 | 5 | 524 | 100 | 616 | 0.0 | 528 |
| MS.gene70582.t1 | MTR_8g494200 | 26.336 | 524 | 298 | 19 | 27 | 508 | 130 | 607 | 6.86e-47 | 173 |
| MS.gene70582.t1 | MTR_3g081450 | 76.238 | 101 | 20 | 1 | 409 | 509 | 32 | 128 | 3.77e-46 | 160 |
| MS.gene70582.t1 | MTR_0095s0020 | 26.686 | 341 | 186 | 14 | 27 | 344 | 155 | 454 | 1.38e-25 | 111 |
| MS.gene70582.t1 | MTR_3g467360 | 26.966 | 356 | 203 | 17 | 182 | 505 | 209 | 539 | 2.91e-21 | 97.8 |
| MS.gene70582.t1 | MTR_3g467360 | 26.966 | 356 | 203 | 17 | 182 | 505 | 215 | 545 | 3.30e-21 | 97.4 |
| MS.gene70582.t1 | MTR_6g007985 | 24.576 | 354 | 217 | 13 | 181 | 505 | 133 | 465 | 2.73e-19 | 91.3 |
| MS.gene70582.t1 | MTR_6g008015 | 24.576 | 354 | 217 | 13 | 181 | 505 | 210 | 542 | 3.88e-19 | 91.3 |
| MS.gene70582.t1 | MTR_6g008055 | 24.251 | 367 | 195 | 15 | 184 | 506 | 213 | 540 | 3.67e-15 | 78.6 |
| MS.gene70582.t1 | MTR_6g007975 | 24.863 | 366 | 202 | 17 | 181 | 506 | 210 | 542 | 4.75e-15 | 78.2 |
| MS.gene70582.t1 | MTR_6g007980 | 22.817 | 355 | 223 | 13 | 182 | 507 | 209 | 541 | 9.43e-14 | 74.3 |
| MS.gene70582.t1 | MTR_6g007980 | 23.034 | 356 | 222 | 13 | 182 | 507 | 209 | 542 | 9.53e-14 | 74.3 |
| MS.gene70582.t1 | MTR_6g007980 | 22.969 | 357 | 222 | 13 | 182 | 507 | 209 | 543 | 9.97e-14 | 74.3 |
| MS.gene70582.t1 | MTR_8g011610 | 41.379 | 87 | 48 | 1 | 22 | 105 | 225 | 311 | 4.26e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70582.t1 | AT3G48090 | 41.209 | 546 | 251 | 12 | 12 | 519 | 100 | 613 | 1.70e-130 | 393 |
| MS.gene70582.t1 | AT3G48090 | 41.604 | 536 | 243 | 12 | 22 | 519 | 2 | 505 | 3.81e-130 | 389 |
| MS.gene70582.t1 | AT3G48080 | 38.776 | 539 | 272 | 13 | 9 | 513 | 97 | 611 | 1.42e-120 | 368 |
| MS.gene70582.t1 | AT3G52430 | 25.356 | 351 | 205 | 13 | 174 | 490 | 175 | 502 | 1.50e-23 | 104 |
| MS.gene70582.t1 | AT3G52430 | 44.000 | 75 | 38 | 2 | 29 | 103 | 112 | 182 | 5.30e-11 | 65.5 |
| MS.gene70582.t1 | AT5G14930 | 28.319 | 226 | 127 | 9 | 308 | 507 | 293 | 509 | 2.54e-14 | 75.9 |
Find 109 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAGATTCAAAGATATTT+TGG | 0.139370 | 3.1:+64422128 | MS.gene70582:intron |
| GTTACTCAGAATCATGTTTA+TGG | 0.160363 | 3.1:+64424749 | MS.gene70582:CDS |
| TAATGCATGATTGTTCTTTA+TGG | 0.162207 | 3.1:-64424957 | None:intergenic |
| GGGATACGATCGGAAGATTT+TGG | 0.194261 | 3.1:-64422908 | None:intergenic |
| CCTCCCATCTGCATTACTTT+TGG | 0.239470 | 3.1:+64422929 | MS.gene70582:CDS |
| GGCTATTCTGGCAACACTTT+GGG | 0.244937 | 3.1:+64422865 | MS.gene70582:CDS |
| GTCATTTAAGGCTATGTTAA+TGG | 0.251285 | 3.1:-64423563 | None:intergenic |
| GCTCATGAATGATTTGCTTT+TGG | 0.251739 | 3.1:-64423119 | None:intergenic |
| ATGCTACAAGGAGAGAAAAT+TGG | 0.262993 | 3.1:+64422984 | MS.gene70582:CDS |
| GGCTAGAACTTGCAGGAGTA+TGG | 0.273354 | 3.1:+64424488 | MS.gene70582:CDS |
| TACCAGGCCAAGGTCATTTA+AGG | 0.278195 | 3.1:-64423575 | None:intergenic |
| TCGTTCCCTTCTAAGTCTTC+TGG | 0.280228 | 3.1:-64424547 | None:intergenic |
| TGGTGGTCCAGTGGCTATTC+TGG | 0.280884 | 3.1:+64422853 | MS.gene70582:CDS |
| CCGTGATGGACGTGTTTATA+TGG | 0.287982 | 3.1:+64424651 | MS.gene70582:CDS |
| GGCTGATAAGGATGTGTTTA+AGG | 0.289164 | 3.1:+64424879 | MS.gene70582:CDS |
| ACATTTGCTTGGAAATCTTC+CGG | 0.306152 | 3.1:-64424460 | None:intergenic |
| TTGTCTGAGCATACTACTTC+AGG | 0.335540 | 3.1:+64423526 | MS.gene70582:CDS |
| TGTCATATCTCATCACAAAA+TGG | 0.352184 | 3.1:-64423021 | None:intergenic |
| GAACTTCCAGAAGACTTAGA+AGG | 0.361685 | 3.1:+64424541 | MS.gene70582:CDS |
| ACTTAGAAGGGAACGAAGAT+TGG | 0.364202 | 3.1:+64424554 | MS.gene70582:CDS |
| TTACTCAGAATCATGTTTAT+GGG | 0.367047 | 3.1:+64424750 | MS.gene70582:CDS |
| ACATGCTGCTTGTAGGCTAA+TGG | 0.368160 | 3.1:+64423219 | MS.gene70582:CDS |
| CATTTGCTTGGAAATCTTCC+GGG | 0.374664 | 3.1:-64424459 | None:intergenic |
| TAAGTTCCAAAGGGTCTATA+AGG | 0.375128 | 3.1:-64423292 | None:intergenic |
| TTGAGTCCTTATAGACCCTT+TGG | 0.379079 | 3.1:+64423286 | MS.gene70582:CDS |
| AGAGGAGCTAGGAGGATTCT+TGG | 0.379820 | 3.1:-64423049 | None:intergenic |
| TAGAAGACTAGTTGAGCCTT+TGG | 0.383000 | 3.1:+64424597 | MS.gene70582:CDS |
| TCACAAGACATGCTGCTTGT+AGG | 0.383836 | 3.1:+64423212 | MS.gene70582:CDS |
| TCAAGCAGCTGCAGCATTAG+AGG | 0.386121 | 3.1:+64424297 | MS.gene70582:CDS |
| CTAAAGGAGGAAGGCCAAAA+AGG | 0.396329 | 3.1:+64424674 | MS.gene70582:CDS |
| CATGCTGCTTGTAGGCTAAT+GGG | 0.400385 | 3.1:+64423220 | MS.gene70582:CDS |
| TGGCTATTCTGGCAACACTT+TGG | 0.417209 | 3.1:+64422864 | MS.gene70582:CDS |
| TGCTACAAGGAGAGAAAATT+GGG | 0.419960 | 3.1:+64422985 | MS.gene70582:CDS |
| ACATCATCAAAAGGCTTGTC+AGG | 0.423403 | 3.1:-64424799 | None:intergenic |
| AACGAAGATTGGATTAAGAT+AGG | 0.426436 | 3.1:+64424565 | MS.gene70582:CDS |
| GTACAGAGGCTAGAACTTGC+AGG | 0.431181 | 3.1:+64424481 | MS.gene70582:CDS |
| CTAGCCTCTGTACATTTGCT+TGG | 0.431295 | 3.1:-64424471 | None:intergenic |
| TGTTGTGTACTTAGACCAAC+TGG | 0.432263 | 3.1:+64423492 | MS.gene70582:CDS |
| TGAGAAAGATGAGGCTGATA+AGG | 0.438651 | 3.1:+64424867 | MS.gene70582:CDS |
| CTAATTACTATAGACATTCA+AGG | 0.443986 | 3.1:+64424626 | MS.gene70582:CDS |
| TAAGGAAAAGGTTGAGGCAT+TGG | 0.451260 | 3.1:+64424822 | MS.gene70582:CDS |
| AAGAAGCAGATAGTGTTTGC+AGG | 0.453653 | 3.1:+64422821 | MS.gene70582:CDS |
| ATGACCTGCAGAATTGCATC+AGG | 0.455008 | 3.1:-64423367 | None:intergenic |
| GATTGTTCTTTATGGTCTGT+TGG | 0.470082 | 3.1:-64424949 | None:intergenic |
| CAATGAATATGTAGGTGGAT+AGG | 0.474650 | 3.1:+64422786 | MS.gene70582:intron |
| GGAAAAGGTTGAGGCATTGG+AGG | 0.475367 | 3.1:+64424825 | MS.gene70582:CDS |
| AATGAATATGTAGGTGGATA+GGG | 0.479173 | 3.1:+64422787 | MS.gene70582:intron |
| CATTATGAGAAGAGGGATGA+AGG | 0.484238 | 3.1:+64424724 | MS.gene70582:CDS |
| AGGTTATTACGATGCATTCA+AGG | 0.484769 | 3.1:+64424426 | MS.gene70582:CDS |
| AATATGTGATTTCCAACTAA+AGG | 0.485127 | 3.1:-64422956 | None:intergenic |
| TGGATTCTACGTTTGTTAAG+TGG | 0.487040 | 3.1:+64424914 | MS.gene70582:CDS |
| AACATAGCCTTAAATGACCT+TGG | 0.489141 | 3.1:+64423568 | MS.gene70582:CDS |
| TGCACTACAAGTGGCGATGA+AGG | 0.491111 | 3.1:+64423322 | MS.gene70582:CDS |
| GTGTTTGCAGGACACTCGTC+TGG | 0.495509 | 3.1:+64422833 | MS.gene70582:CDS |
| GCAGAAAATGTAAGTTCCAA+AGG | 0.507553 | 3.1:-64423302 | None:intergenic |
| GTTGGAACATTATGAGAAGA+GGG | 0.510509 | 3.1:+64424717 | MS.gene70582:CDS |
| TTCATGAGCGAATCGAGTCT+TGG | 0.516950 | 3.1:+64423133 | MS.gene70582:CDS |
| GAAGTAGTATGCTCAGACAA+AGG | 0.517071 | 3.1:-64423523 | None:intergenic |
| CCAGTTCAAAATGTTGTCGC+AGG | 0.517117 | 3.1:-64423447 | None:intergenic |
| AGATAGCCGCTGTGGAGGAT+AGG | 0.526622 | 3.1:+64424356 | MS.gene70582:CDS |
| TGGTAACAATGAAGCTGCTA+AGG | 0.528491 | 3.1:+64422089 | None:intergenic |
| TGATGTTAAGGAAAAGGTTG+AGG | 0.529296 | 3.1:+64424816 | MS.gene70582:CDS |
| GCTAGAACTTGCAGGAGTAT+GGG | 0.533503 | 3.1:+64424489 | MS.gene70582:CDS |
| AAACCCTGATGCAATTCTGC+AGG | 0.542505 | 3.1:+64423363 | MS.gene70582:CDS |
| ATTCTACGTTTGTTAAGTGG+TGG | 0.545586 | 3.1:+64424917 | MS.gene70582:CDS |
| GGACGTGTTTATATGGCTAA+AGG | 0.547868 | 3.1:+64424658 | MS.gene70582:CDS |
| AGCCTTAAATGACCTTGGCC+TGG | 0.548198 | 3.1:+64423573 | MS.gene70582:CDS |
| TAGGTATACACAAAGATGGT+TGG | 0.548252 | 3.1:+64424699 | MS.gene70582:CDS |
| GGAGGATAGGATGAAAGCAC+TGG | 0.548822 | 3.1:+64424369 | MS.gene70582:CDS |
| TCATCACAAAATGGAAGAAG+TGG | 0.551943 | 3.1:-64423012 | None:intergenic |
| CAGAAAATGTAAGTTCCAAA+GGG | 0.551969 | 3.1:-64423301 | None:intergenic |
| CGAAAGAAGATAGAGGAGCT+AGG | 0.552232 | 3.1:-64423060 | None:intergenic |
| ATCATGTTTATGGGCTGAAG+TGG | 0.554848 | 3.1:+64424759 | MS.gene70582:CDS |
| AACTTCCAGAAGACTTAGAA+GGG | 0.561390 | 3.1:+64424542 | MS.gene70582:CDS |
| GGTATAGGTATACACAAAGA+TGG | 0.561423 | 3.1:+64424695 | MS.gene70582:CDS |
| AAGCTCTGAAGAAGAAGCTG+AGG | 0.562108 | 3.1:+64423408 | MS.gene70582:CDS |
| GGTTGGAACATTATGAGAAG+AGG | 0.569597 | 3.1:+64424716 | MS.gene70582:CDS |
| ATGTTTATGGGCTGAAGTGG+AGG | 0.574694 | 3.1:+64424762 | MS.gene70582:CDS |
| CAAAAGTAATGCAGATGGGA+GGG | 0.576141 | 3.1:-64422928 | None:intergenic |
| AGAACCAAAAGTAATGCAGA+TGG | 0.587556 | 3.1:-64422933 | None:intergenic |
| TGGAGGAATTTATAAGCAAG+TGG | 0.588253 | 3.1:+64424842 | MS.gene70582:CDS |
| AAGGGTCTATAAGGACTCAA+AGG | 0.589494 | 3.1:-64423283 | None:intergenic |
| AAAGTCATCACTTGAAGATG+AGG | 0.590426 | 3.1:+64422152 | MS.gene70582:CDS |
| ACAAAAGATAGCCGCTGTGG+AGG | 0.604033 | 3.1:+64424351 | MS.gene70582:CDS |
| CAGCTGCAGCATTAGAGGAA+CGG | 0.605468 | 3.1:+64424302 | MS.gene70582:CDS |
| AAAGGTTGCATACCAGGCCA+AGG | 0.614366 | 3.1:-64423585 | None:intergenic |
| AGTGTTGCCAGAATAGCCAC+TGG | 0.614618 | 3.1:-64422860 | None:intergenic |
| GGACAGTTACAGAGAAACGC+GGG | 0.617330 | 3.1:+64424390 | MS.gene70582:CDS |
| CGTGTTTATATGGCTAAAGG+AGG | 0.625592 | 3.1:+64424661 | MS.gene70582:CDS |
| TTTATATGGCTAAAGGAGGA+AGG | 0.625809 | 3.1:+64424665 | MS.gene70582:CDS |
| CCAAAAGTAATGCAGATGGG+AGG | 0.626384 | 3.1:-64422929 | None:intergenic |
| CCATATAAACACGTCCATCA+CGG | 0.630887 | 3.1:-64424651 | None:intergenic |
| TATGAGAAGAGGGATGAAGG+TGG | 0.634440 | 3.1:+64424727 | MS.gene70582:CDS |
| TTTGCAGGACACTCGTCTGG+TGG | 0.640829 | 3.1:+64422836 | MS.gene70582:CDS |
| ACACTCGTCTGGTGGTCCAG+TGG | 0.641162 | 3.1:+64422844 | MS.gene70582:CDS |
| AGACATTCAAGGAACCGTGA+TGG | 0.644212 | 3.1:+64424637 | MS.gene70582:CDS |
| GAACCAAAAGTAATGCAGAT+GGG | 0.645149 | 3.1:-64422932 | None:intergenic |
| TCTGAGCATACTACTTCAGG+TGG | 0.659119 | 3.1:+64423529 | MS.gene70582:CDS |
| GCAGATGGGAGGGATACGAT+CGG | 0.665165 | 3.1:-64422918 | None:intergenic |
| TAGTAATTAGCAATATCCAA+AGG | 0.665329 | 3.1:-64424613 | None:intergenic |
| TGACCTGCAGAATTGCATCA+GGG | 0.674595 | 3.1:-64423366 | None:intergenic |
| GCTACAAAAGATAGCCGCTG+TGG | 0.677260 | 3.1:+64424348 | MS.gene70582:CDS |
| ATTCAAGGATCAATTAGACC+CGG | 0.679489 | 3.1:+64424441 | MS.gene70582:CDS |
| ATTTCCAAGCAAATGTACAG+AGG | 0.698435 | 3.1:+64424467 | MS.gene70582:CDS |
| AAGAAGATAGAGGAGCTAGG+AGG | 0.700489 | 3.1:-64423057 | None:intergenic |
| TGGACAGTTACAGAGAAACG+CGG | 0.726781 | 3.1:+64424389 | MS.gene70582:CDS |
| CAAGTGGCATGAGAAAGATG+AGG | 0.734716 | 3.1:+64424858 | MS.gene70582:CDS |
| GACAGTTACAGAGAAACGCG+GGG | 0.746046 | 3.1:+64424391 | MS.gene70582:CDS |
| TTTCATCCTATCCTCCACAG+CGG | 0.790893 | 3.1:-64424362 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATATTTAATAACTC+AGG | + | chr3.1:64422634-64422653 | MS.gene70582:intron | 15.0% |
| !! | ATATATTTCAATGAATATGT+AGG | + | chr3.1:64422778-64422797 | MS.gene70582:intron | 15.0% |
| !! | ATATGAGTATATAAAGTAAA+AGG | - | chr3.1:64423686-64423705 | None:intergenic | 15.0% |
| !!! | ACAAAATTAATTTTCAACTT+AGG | - | chr3.1:64422400-64422419 | None:intergenic | 15.0% |
| !! | CATAATCAGATATAATTGAA+TGG | + | chr3.1:64424013-64424032 | MS.gene70582:intron | 20.0% |
| !! | GTAGTAATTTATTAGACATA+AGG | - | chr3.1:64423826-64423845 | None:intergenic | 20.0% |
| !! | TTAAGTATAGATGCTATAAA+AGG | - | chr3.1:64422256-64422275 | None:intergenic | 20.0% |
| !!! | AAACTAATATTGAGTTGTTT+TGG | - | chr3.1:64422307-64422326 | None:intergenic | 20.0% |
| !!! | AATGTCATGTATAATTTGTT+GGG | + | chr3.1:64422557-64422576 | MS.gene70582:intron | 20.0% |
| ! | AATATGTGATTTCCAACTAA+AGG | - | chr3.1:64422959-64422978 | None:intergenic | 25.0% |
| ! | AATCAGATATGTCACTAATA+TGG | - | chr3.1:64423730-64423749 | None:intergenic | 25.0% |
| ! | CCAAAATATCTTTGAATCTT+TGG | - | chr3.1:64422131-64422150 | None:intergenic | 25.0% |
| ! | CTAATTACTATAGACATTCA+AGG | + | chr3.1:64424626-64424645 | MS.gene70582:CDS | 25.0% |
| ! | TAATGCATGATTGTTCTTTA+TGG | - | chr3.1:64424960-64424979 | None:intergenic | 25.0% |
| ! | TAGTAATTAGCAATATCCAA+AGG | - | chr3.1:64424616-64424635 | None:intergenic | 25.0% |
| ! | TATTTCAATGAATATGTAGG+TGG | + | chr3.1:64422781-64422800 | MS.gene70582:intron | 25.0% |
| ! | TCTCATGTATTATGTATGAT+AGG | - | chr3.1:64424092-64424111 | None:intergenic | 25.0% |
| ! | TTAACATTAGAGACTCAATT+AGG | + | chr3.1:64422326-64422345 | MS.gene70582:intron | 25.0% |
| ! | TTACTCAGAATCATGTTTAT+GGG | + | chr3.1:64424750-64424769 | MS.gene70582:CDS | 25.0% |
| ! | TTTGAACTGGTAAAAAACTT+TGG | + | chr3.1:64423460-64423479 | MS.gene70582:CDS | 25.0% |
| !! | CAATGTCATGTATAATTTGT+TGG | + | chr3.1:64422556-64422575 | MS.gene70582:intron | 25.0% |
| !! | CCAAAGATTCAAAGATATTT+TGG | + | chr3.1:64422128-64422147 | MS.gene70582:intron | 25.0% |
| !! | TTTTCCTTAACATCATCAAA+AGG | - | chr3.1:64424811-64424830 | None:intergenic | 25.0% |
| !!! | ACTTTAAAATCGCCAAAAAT+AGG | - | chr3.1:64423618-64423637 | None:intergenic | 25.0% |
| !!! | ATCACATGGATTTGTTAAAA+AGG | + | chr3.1:64422722-64422741 | MS.gene70582:intron | 25.0% |
| !!! | CATTTTTAGCATTAAGGATA+GGG | - | chr3.1:64422282-64422301 | None:intergenic | 25.0% |
| !!! | CTTTAAAATCGCCAAAAATA+GGG | - | chr3.1:64423617-64423636 | None:intergenic | 25.0% |
| !!! | TCATTTTTAGCATTAAGGAT+AGG | - | chr3.1:64422283-64422302 | None:intergenic | 25.0% |
| !!! | TGCTATTTTTTCATGTTCAA+TGG | - | chr3.1:64424204-64424223 | None:intergenic | 25.0% |
| !!! | TTGGTTCATTTTTAGCATTA+AGG | - | chr3.1:64422288-64422307 | None:intergenic | 25.0% |
| !!! | TTTTGATGATGTTAAGGAAA+AGG | + | chr3.1:64424810-64424829 | MS.gene70582:CDS | 25.0% |
| AACGAAGATTGGATTAAGAT+AGG | + | chr3.1:64424565-64424584 | MS.gene70582:CDS | 30.0% | |
| AATGAATATGTAGGTGGATA+GGG | + | chr3.1:64422787-64422806 | MS.gene70582:intron | 30.0% | |
| ATTTGATTCATGTACCAAGT+TGG | - | chr3.1:64422364-64422383 | None:intergenic | 30.0% | |
| CAGAAAATGTAAGTTCCAAA+GGG | - | chr3.1:64423304-64423323 | None:intergenic | 30.0% | |
| GTTACTCAGAATCATGTTTA+TGG | + | chr3.1:64424749-64424768 | MS.gene70582:CDS | 30.0% | |
| TGACACTATCAAATATCACA+TGG | + | chr3.1:64422708-64422727 | MS.gene70582:intron | 30.0% | |
| TGTCATATCTCATCACAAAA+TGG | - | chr3.1:64423024-64423043 | None:intergenic | 30.0% | |
| TTTGCATAACTAGATACACA+TGG | - | chr3.1:64422212-64422231 | None:intergenic | 30.0% | |
| ! | ACATATTTTCTCATGCTACA+AGG | + | chr3.1:64422972-64422991 | MS.gene70582:CDS | 30.0% |
| ! | ACATGACATTGACATACTTT+TGG | - | chr3.1:64422547-64422566 | None:intergenic | 30.0% |
| ! | ATACTTTTGGTCCTTAAAGA+GGG | - | chr3.1:64422534-64422553 | None:intergenic | 30.0% |
| ! | GTCATTTAAGGCTATGTTAA+TGG | - | chr3.1:64423566-64423585 | None:intergenic | 30.0% |
| ! | GTGCAACTGTTTCAAATTTT+TGG | - | chr3.1:64423087-64423106 | None:intergenic | 30.0% |
| ! | TGTGTATACCTATACCTTTT+TGG | - | chr3.1:64424691-64424710 | None:intergenic | 30.0% |
| !!! | ATGTTTTTAGTCCCTCTTTA+AGG | + | chr3.1:64422520-64422539 | MS.gene70582:intron | 30.0% |
| !!! | CTCATGAATGATTTGCTTTT+GGG | - | chr3.1:64423121-64423140 | None:intergenic | 30.0% |
| !!! | GTTTAAGGATGTGTTTTTAG+TGG | + | chr3.1:64424894-64424913 | MS.gene70582:CDS | 30.0% |
| AAAATCGCCAAAAATAGGGA+AGG | - | chr3.1:64423613-64423632 | None:intergenic | 35.0% | |
| AAAGTCATCACTTGAAGATG+AGG | + | chr3.1:64422152-64422171 | MS.gene70582:CDS | 35.0% | |
| AACTTCCAGAAGACTTAGAA+GGG | + | chr3.1:64424542-64424561 | MS.gene70582:CDS | 35.0% | |
| ACATAGTTTCATTTCCACCA+AGG | - | chr3.1:64424168-64424187 | None:intergenic | 35.0% | |
| ACATTTGCTTGGAAATCTTC+CGG | - | chr3.1:64424463-64424482 | None:intergenic | 35.0% | |
| ACTTGCAGGAACTAAAAAGT+AGG | - | chr3.1:64422489-64422508 | None:intergenic | 35.0% | |
| AGAACCAAAAGTAATGCAGA+TGG | - | chr3.1:64422936-64422955 | None:intergenic | 35.0% | |
| AGATACACATGGTAAGATAG+AGG | - | chr3.1:64422201-64422220 | None:intergenic | 35.0% | |
| AGGTTATTACGATGCATTCA+AGG | + | chr3.1:64424426-64424445 | MS.gene70582:CDS | 35.0% | |
| ATGCTACAAGGAGAGAAAAT+TGG | + | chr3.1:64422984-64423003 | MS.gene70582:CDS | 35.0% | |
| ATTCAAGGATCAATTAGACC+CGG | + | chr3.1:64424441-64424460 | MS.gene70582:CDS | 35.0% | |
| ATTTCCAAGCAAATGTACAG+AGG | + | chr3.1:64424467-64424486 | MS.gene70582:CDS | 35.0% | |
| CAATGAATATGTAGGTGGAT+AGG | + | chr3.1:64422786-64422805 | MS.gene70582:intron | 35.0% | |
| CCAAAAATAGGGAAGGATAA+AGG | - | chr3.1:64423606-64423625 | None:intergenic | 35.0% | |
| GAACCAAAAGTAATGCAGAT+GGG | - | chr3.1:64422935-64422954 | None:intergenic | 35.0% | |
| GATTGTTCTTTATGGTCTGT+TGG | - | chr3.1:64424952-64424971 | None:intergenic | 35.0% | |
| GCAGAAAATGTAAGTTCCAA+AGG | - | chr3.1:64423305-64423324 | None:intergenic | 35.0% | |
| GGCAATTTATTTGTCCAACT+TGG | + | chr3.1:64422347-64422366 | MS.gene70582:intron | 35.0% | |
| GGTATAGGTATACACAAAGA+TGG | + | chr3.1:64424695-64424714 | MS.gene70582:CDS | 35.0% | |
| GTGTAATGCATATAACAGCA+TGG | - | chr3.1:64424144-64424163 | None:intergenic | 35.0% | |
| GTTATATGCATTACACACCT+TGG | + | chr3.1:64424148-64424167 | MS.gene70582:intron | 35.0% | |
| GTTGGAACATTATGAGAAGA+GGG | + | chr3.1:64424717-64424736 | MS.gene70582:CDS | 35.0% | |
| TAAGTTCCAAAGGGTCTATA+AGG | - | chr3.1:64423295-64423314 | None:intergenic | 35.0% | |
| TAGGTATACACAAAGATGGT+TGG | + | chr3.1:64424699-64424718 | MS.gene70582:CDS | 35.0% | |
| TCATCACAAAATGGAAGAAG+TGG | - | chr3.1:64423015-64423034 | None:intergenic | 35.0% | |
| TGATGTTAAGGAAAAGGTTG+AGG | + | chr3.1:64424816-64424835 | MS.gene70582:CDS | 35.0% | |
| TGCTACAAGGAGAGAAAATT+GGG | + | chr3.1:64422985-64423004 | MS.gene70582:CDS | 35.0% | |
| TGGAGGAATTTATAAGCAAG+TGG | + | chr3.1:64424842-64424861 | MS.gene70582:CDS | 35.0% | |
| TTTATATGGCTAAAGGAGGA+AGG | + | chr3.1:64424665-64424684 | MS.gene70582:CDS | 35.0% | |
| ! | AACATAGCCTTAAATGACCT+TGG | + | chr3.1:64423568-64423587 | MS.gene70582:CDS | 35.0% |
| ! | ACAAAGGAAGATTTTCCAGT+TGG | - | chr3.1:64423510-64423529 | None:intergenic | 35.0% |
| ! | ATTCTACGTTTGTTAAGTGG+TGG | + | chr3.1:64424917-64424936 | MS.gene70582:CDS | 35.0% |
| ! | ATTTGTTGGGAGTGAAAAGT+GGG | + | chr3.1:64422570-64422589 | MS.gene70582:intron | 35.0% |
| ! | CATACTTTTGGTCCTTAAAG+AGG | - | chr3.1:64422535-64422554 | None:intergenic | 35.0% |
| ! | CCTTTATCCTTCCCTATTTT+TGG | + | chr3.1:64423603-64423622 | MS.gene70582:intron | 35.0% |
| ! | TACATTTTCTGCACTACAAG+TGG | + | chr3.1:64423313-64423332 | MS.gene70582:CDS | 35.0% |
| ! | TGGAGTTGGAAAGTTTTCTA+AGG | - | chr3.1:64422891-64422910 | None:intergenic | 35.0% |
| ! | TGGATTCTACGTTTGTTAAG+TGG | + | chr3.1:64424914-64424933 | MS.gene70582:CDS | 35.0% |
| ! | TTTTGGTCGAAAGAAGATAG+AGG | - | chr3.1:64423070-64423089 | None:intergenic | 35.0% |
| !! | AATTTGTTGGGAGTGAAAAG+TGG | + | chr3.1:64422569-64422588 | MS.gene70582:intron | 35.0% |
| !!! | ACTTTTGGTTCTCCTTTAGT+TGG | + | chr3.1:64422944-64422963 | MS.gene70582:CDS | 35.0% |
| !!! | CAAGCCTTTTGATGATGTTA+AGG | + | chr3.1:64424804-64424823 | MS.gene70582:CDS | 35.0% |
| !!! | GCTCATGAATGATTTGCTTT+TGG | - | chr3.1:64423122-64423141 | None:intergenic | 35.0% |
| AAGAAGCAGATAGTGTTTGC+AGG | + | chr3.1:64422821-64422840 | MS.gene70582:CDS | 40.0% | |
| AAGGATAAAGGTTGCATACC+AGG | - | chr3.1:64423594-64423613 | None:intergenic | 40.0% | |
| AAGGGTCTATAAGGACTCAA+AGG | - | chr3.1:64423286-64423305 | None:intergenic | 40.0% | |
| ACATCATCAAAAGGCTTGTC+AGG | - | chr3.1:64424802-64424821 | None:intergenic | 40.0% | |
| ACTTAGAAGGGAACGAAGAT+TGG | + | chr3.1:64424554-64424573 | MS.gene70582:CDS | 40.0% | |
| ATATGCATTACACACCTTGG+TGG | + | chr3.1:64424151-64424170 | MS.gene70582:intron | 40.0% | |
| CAAAAGTAATGCAGATGGGA+GGG | - | chr3.1:64422931-64422950 | None:intergenic | 40.0% | |
| CATTATGAGAAGAGGGATGA+AGG | + | chr3.1:64424724-64424743 | MS.gene70582:CDS | 40.0% | |
| CATTTGCTTGGAAATCTTCC+GGG | - | chr3.1:64424462-64424481 | None:intergenic | 40.0% | |
| CCATATAAACACGTCCATCA+CGG | - | chr3.1:64424654-64424673 | None:intergenic | 40.0% | |
| CGTGTTTATATGGCTAAAGG+AGG | + | chr3.1:64424661-64424680 | MS.gene70582:CDS | 40.0% | |
| GAACTTCCAGAAGACTTAGA+AGG | + | chr3.1:64424541-64424560 | MS.gene70582:CDS | 40.0% | |
| GAAGTAGTATGCTCAGACAA+AGG | - | chr3.1:64423526-64423545 | None:intergenic | 40.0% | |
| GGACGTGTTTATATGGCTAA+AGG | + | chr3.1:64424658-64424677 | MS.gene70582:CDS | 40.0% | |
| GGCTGATAAGGATGTGTTTA+AGG | + | chr3.1:64424879-64424898 | MS.gene70582:CDS | 40.0% | |
| GGTTGGAACATTATGAGAAG+AGG | + | chr3.1:64424716-64424735 | MS.gene70582:CDS | 40.0% | |
| TAAGGAAAAGGTTGAGGCAT+TGG | + | chr3.1:64424822-64424841 | MS.gene70582:CDS | 40.0% | |
| TGAGAAAGATGAGGCTGATA+AGG | + | chr3.1:64424867-64424886 | MS.gene70582:CDS | 40.0% | |
| TGTTGTGTACTTAGACCAAC+TGG | + | chr3.1:64423492-64423511 | MS.gene70582:CDS | 40.0% | |
| TTGAGTCCTTATAGACCCTT+TGG | + | chr3.1:64423286-64423305 | MS.gene70582:CDS | 40.0% | |
| TTGTCTGAGCATACTACTTC+AGG | + | chr3.1:64423526-64423545 | MS.gene70582:CDS | 40.0% | |
| ! | AATGTTGTCGCAGGCTTTTA+AGG | - | chr3.1:64423441-64423460 | None:intergenic | 40.0% |
| ! | ATCATGTTTATGGGCTGAAG+TGG | + | chr3.1:64424759-64424778 | MS.gene70582:CDS | 40.0% |
| ! | ATGTTGTCGCAGGCTTTTAA+GGG | - | chr3.1:64423440-64423459 | None:intergenic | 40.0% |
| ! | CATGCAACTTTGTAACTTGC+AGG | - | chr3.1:64422503-64422522 | None:intergenic | 40.0% |
| ! | TAGAAGACTAGTTGAGCCTT+TGG | + | chr3.1:64424597-64424616 | MS.gene70582:CDS | 40.0% |
| AAACCCTGATGCAATTCTGC+AGG | + | chr3.1:64423363-64423382 | MS.gene70582:CDS | 45.0% | |
| AAGAAGATAGAGGAGCTAGG+AGG | - | chr3.1:64423060-64423079 | None:intergenic | 45.0% | |
| AGACATTCAAGGAACCGTGA+TGG | + | chr3.1:64424637-64424656 | MS.gene70582:CDS | 45.0% | |
| ATGACCTGCAGAATTGCATC+AGG | - | chr3.1:64423370-64423389 | None:intergenic | 45.0% | |
| CAAGTGGCATGAGAAAGATG+AGG | + | chr3.1:64424858-64424877 | MS.gene70582:CDS | 45.0% | |
| CCAAAAGTAATGCAGATGGG+AGG | - | chr3.1:64422932-64422951 | None:intergenic | 45.0% | |
| CCAGTTCAAAATGTTGTCGC+AGG | - | chr3.1:64423450-64423469 | None:intergenic | 45.0% | |
| CGAAAGAAGATAGAGGAGCT+AGG | - | chr3.1:64423063-64423082 | None:intergenic | 45.0% | |
| CTAAAGGAGGAAGGCCAAAA+AGG | + | chr3.1:64424674-64424693 | MS.gene70582:CDS | 45.0% | |
| CTAGCCTCTGTACATTTGCT+TGG | - | chr3.1:64424474-64424493 | None:intergenic | 45.0% | |
| GGCTATTCTGGCAACACTTT+GGG | + | chr3.1:64422865-64422884 | MS.gene70582:CDS | 45.0% | |
| GGGAGTGAAAAGTGGGTATA+GGG | + | chr3.1:64422577-64422596 | MS.gene70582:intron | 45.0% | |
| TACCAGGCCAAGGTCATTTA+AGG | - | chr3.1:64423578-64423597 | None:intergenic | 45.0% | |
| TATGAGAAGAGGGATGAAGG+TGG | + | chr3.1:64424727-64424746 | MS.gene70582:CDS | 45.0% | |
| TCGTTCCCTTCTAAGTCTTC+TGG | - | chr3.1:64424550-64424569 | None:intergenic | 45.0% | |
| TCTGAGCATACTACTTCAGG+TGG | + | chr3.1:64423529-64423548 | MS.gene70582:CDS | 45.0% | |
| TGACCTGCAGAATTGCATCA+GGG | - | chr3.1:64423369-64423388 | None:intergenic | 45.0% | |
| TGGACAGTTACAGAGAAACG+CGG | + | chr3.1:64424389-64424408 | MS.gene70582:CDS | 45.0% | |
| TGGCTATTCTGGCAACACTT+TGG | + | chr3.1:64422864-64422883 | MS.gene70582:CDS | 45.0% | |
| TGGGAGTGAAAAGTGGGTAT+AGG | + | chr3.1:64422576-64422595 | MS.gene70582:intron | 45.0% | |
| TTCATGAGCGAATCGAGTCT+TGG | + | chr3.1:64423133-64423152 | MS.gene70582:CDS | 45.0% | |
| TTTCATCCTATCCTCCACAG+CGG | - | chr3.1:64424365-64424384 | None:intergenic | 45.0% | |
| ! | ACATGCTGCTTGTAGGCTAA+TGG | + | chr3.1:64423219-64423238 | MS.gene70582:CDS | 45.0% |
| ! | ATGTTTATGGGCTGAAGTGG+AGG | + | chr3.1:64424762-64424781 | MS.gene70582:CDS | 45.0% |
| ! | CATGCTGCTTGTAGGCTAAT+GGG | + | chr3.1:64423220-64423239 | MS.gene70582:CDS | 45.0% |
| ! | CCTCCCATCTGCATTACTTT+TGG | + | chr3.1:64422929-64422948 | MS.gene70582:CDS | 45.0% |
| ! | CCTGCGACAACATTTTGAAC+TGG | + | chr3.1:64423447-64423466 | MS.gene70582:CDS | 45.0% |
| ! | GAGGAAGGCCAAAAAGGTAT+AGG | + | chr3.1:64424680-64424699 | MS.gene70582:CDS | 45.0% |
| ! | GCTAGAACTTGCAGGAGTAT+GGG | + | chr3.1:64424489-64424508 | MS.gene70582:CDS | 45.0% |
| ! | GGGATACGATCGGAAGATTT+TGG | - | chr3.1:64422911-64422930 | None:intergenic | 45.0% |
| ! | TCACAAGACATGCTGCTTGT+AGG | + | chr3.1:64423212-64423231 | MS.gene70582:CDS | 45.0% |
| ! | TGTTGTCGCAGGCTTTTAAG+GGG | - | chr3.1:64423439-64423458 | None:intergenic | 45.0% |
| !! | AAGCTCTGAAGAAGAAGCTG+AGG | + | chr3.1:64423408-64423427 | MS.gene70582:CDS | 45.0% |
| !! | CCGTGATGGACGTGTTTATA+TGG | + | chr3.1:64424651-64424670 | MS.gene70582:CDS | 45.0% |
| !!! | CGATCGGAAGATTTTGGAGT+TGG | - | chr3.1:64422905-64422924 | None:intergenic | 45.0% |
| AAAGGTTGCATACCAGGCCA+AGG | - | chr3.1:64423588-64423607 | None:intergenic | 50.0% | |
| ACAAAAGATAGCCGCTGTGG+AGG | + | chr3.1:64424351-64424370 | MS.gene70582:CDS | 50.0% | |
| ACGCGGGGACATCAGAAAAA+AGG | + | chr3.1:64424406-64424425 | MS.gene70582:CDS | 50.0% | |
| AGAGGAGCTAGGAGGATTCT+TGG | - | chr3.1:64423052-64423071 | None:intergenic | 50.0% | |
| AGCCTTAAATGACCTTGGCC+TGG | + | chr3.1:64423573-64423592 | MS.gene70582:CDS | 50.0% | |
| AGTGTTGCCAGAATAGCCAC+TGG | - | chr3.1:64422863-64422882 | None:intergenic | 50.0% | |
| CAGCTGCAGCATTAGAGGAA+CGG | + | chr3.1:64424302-64424321 | MS.gene70582:CDS | 50.0% | |
| GACAGTTACAGAGAAACGCG+GGG | + | chr3.1:64424391-64424410 | MS.gene70582:CDS | 50.0% | |
| GCTACAAAAGATAGCCGCTG+TGG | + | chr3.1:64424348-64424367 | MS.gene70582:CDS | 50.0% | |
| GGACAGTTACAGAGAAACGC+GGG | + | chr3.1:64424390-64424409 | MS.gene70582:CDS | 50.0% | |
| GGCTAGAACTTGCAGGAGTA+TGG | + | chr3.1:64424488-64424507 | MS.gene70582:CDS | 50.0% | |
| GTACAGAGGCTAGAACTTGC+AGG | + | chr3.1:64424481-64424500 | MS.gene70582:CDS | 50.0% | |
| TCAAGCAGCTGCAGCATTAG+AGG | + | chr3.1:64424297-64424316 | MS.gene70582:CDS | 50.0% | |
| TGCACTACAAGTGGCGATGA+AGG | + | chr3.1:64423322-64423341 | MS.gene70582:CDS | 50.0% | |
| ! | GGAGGATAGGATGAAAGCAC+TGG | + | chr3.1:64424369-64424388 | MS.gene70582:CDS | 50.0% |
| !! | GGAAAAGGTTGAGGCATTGG+AGG | + | chr3.1:64424825-64424844 | MS.gene70582:CDS | 50.0% |
| AGATAGCCGCTGTGGAGGAT+AGG | + | chr3.1:64424356-64424375 | MS.gene70582:CDS | 55.0% | |
| GCAGATGGGAGGGATACGAT+CGG | - | chr3.1:64422921-64422940 | None:intergenic | 55.0% | |
| GTGTTTGCAGGACACTCGTC+TGG | + | chr3.1:64422833-64422852 | MS.gene70582:CDS | 55.0% | |
| TGGTGGTCCAGTGGCTATTC+TGG | + | chr3.1:64422853-64422872 | MS.gene70582:CDS | 55.0% | |
| TTTGCAGGACACTCGTCTGG+TGG | + | chr3.1:64422836-64422855 | MS.gene70582:CDS | 55.0% | |
| ACACTCGTCTGGTGGTCCAG+TGG | + | chr3.1:64422844-64422863 | MS.gene70582:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64422097 | 64424999 | 64422097 | ID=MS.gene70582 |
| chr3.1 | mRNA | 64422097 | 64424999 | 64422097 | ID=MS.gene70582.t1;Parent=MS.gene70582 |
| chr3.1 | exon | 64422097 | 64422110 | 64422097 | ID=MS.gene70582.t1.exon1;Parent=MS.gene70582.t1 |
| chr3.1 | CDS | 64422097 | 64422110 | 64422097 | ID=cds.MS.gene70582.t1;Parent=MS.gene70582.t1 |
| chr3.1 | exon | 64422134 | 64422173 | 64422134 | ID=MS.gene70582.t1.exon2;Parent=MS.gene70582.t1 |
| chr3.1 | CDS | 64422134 | 64422173 | 64422134 | ID=cds.MS.gene70582.t1;Parent=MS.gene70582.t1 |
| chr3.1 | exon | 64422800 | 64423594 | 64422800 | ID=MS.gene70582.t1.exon3;Parent=MS.gene70582.t1 |
| chr3.1 | CDS | 64422800 | 64423594 | 64422800 | ID=cds.MS.gene70582.t1;Parent=MS.gene70582.t1 |
| chr3.1 | exon | 64424274 | 64424999 | 64424274 | ID=MS.gene70582.t1.exon4;Parent=MS.gene70582.t1 |
| chr3.1 | CDS | 64424274 | 64424999 | 64424274 | ID=cds.MS.gene70582.t1;Parent=MS.gene70582.t1 |
| Gene Sequence |
| Protein sequence |
