AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69123

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69123.t1 MTR_3g111620 95.200 250 12 0 1 250 1 250 1.23e-168 465
MS.gene69123.t1 MTR_1g021945 78.355 231 48 2 21 250 20 249 1.85e-128 363
MS.gene69123.t1 MTR_8g036215 56.410 234 97 3 13 245 8 237 8.43e-91 268
MS.gene69123.t1 MTR_6g079580 52.917 240 104 4 13 246 4 240 4.97e-88 261
MS.gene69123.t1 MTR_8g107140 56.944 216 88 3 33 246 33 245 1.89e-87 260
MS.gene69123.t1 MTR_4g073720 53.942 241 103 5 7 245 5 239 9.74e-86 259
MS.gene69123.t1 MTR_5g022350 52.734 256 106 6 1 250 1 247 1.94e-85 257
MS.gene69123.t1 MTR_8g075510 55.061 247 99 7 6 249 10 247 2.48e-84 252
MS.gene69123.t1 MTR_8g037890 52.174 253 114 6 1 249 1 250 1.93e-83 252
MS.gene69123.t1 MTR_8g075510 55.144 243 97 7 6 245 10 243 1.33e-82 249
MS.gene69123.t1 MTR_8g075550 55.459 229 93 5 29 249 30 257 2.10e-79 241
MS.gene69123.t1 MTR_1g025420 52.227 247 109 8 10 249 7 251 3.47e-77 236
MS.gene69123.t1 MTR_3g114030 54.867 226 96 6 27 247 7 231 4.42e-77 233
MS.gene69123.t1 MTR_1g025420 52.282 241 108 7 10 245 7 245 6.35e-77 234
MS.gene69123.t1 MTR_8g056820 50.813 246 113 6 9 250 10 251 1.27e-76 233
MS.gene69123.t1 MTR_1g062590 51.899 237 109 5 13 246 8 242 3.35e-76 231
MS.gene69123.t1 MTR_5g022310 51.429 245 109 6 13 250 14 255 7.51e-76 231
MS.gene69123.t1 MTR_7g102380 52.321 237 106 6 13 246 9 241 9.53e-76 230
MS.gene69123.t1 MTR_5g022310 51.004 249 112 6 9 250 10 255 1.29e-75 231
MS.gene69123.t1 MTR_5g059200 48.583 247 117 4 1 245 1 239 1.78e-75 231
MS.gene69123.t1 MTR_1g062660 49.590 244 118 5 7 247 2 243 6.48e-75 228
MS.gene69123.t1 MTR_1g062350 50.628 239 113 5 13 248 8 244 2.85e-74 226
MS.gene69123.t1 MTR_1g062340 51.064 235 110 5 17 248 12 244 1.23e-73 224
MS.gene69123.t1 MTR_3g068015 48.661 224 112 3 25 246 26 248 1.69e-73 224
MS.gene69123.t1 MTR_7g062610 47.556 225 116 2 23 246 19 242 2.23e-73 224
MS.gene69123.t1 MTR_1g062370 49.372 239 116 5 13 248 8 244 1.13e-72 222
MS.gene69123.t1 MTR_4g073730 51.250 240 111 5 12 246 10 248 2.47e-72 223
MS.gene69123.t1 MTR_1g062630 50.420 238 113 5 13 247 8 243 5.25e-72 221
MS.gene69123.t1 MTR_4g073730 51.250 240 111 5 12 246 10 248 5.92e-72 223
MS.gene69123.t1 MTR_2g067980 48.387 248 120 6 9 250 6 251 3.43e-71 235
MS.gene69123.t1 MTR_2g069660 49.580 238 116 4 12 246 7 243 4.00e-70 216
MS.gene69123.t1 MTR_2g068030 49.776 223 102 7 29 245 25 243 3.43e-69 213
MS.gene69123.t1 MTR_6g009480 42.460 252 139 4 1 246 1 252 7.20e-69 213
MS.gene69123.t1 MTR_1g062690 44.958 238 104 4 13 248 8 220 6.30e-61 191
MS.gene69123.t1 MTR_2g068655 45.374 227 118 6 24 246 28 252 1.27e-60 193
MS.gene69123.t1 MTR_4g063630 39.407 236 137 5 15 245 17 251 1.96e-55 178
MS.gene69123.t1 MTR_5g010635 44.292 219 102 7 29 246 26 225 6.84e-52 169
MS.gene69123.t1 MTR_5g010640 39.370 254 128 9 1 246 1 236 7.19e-51 166
MS.gene69123.t1 MTR_8g096900 40.084 237 119 8 12 246 33 248 4.76e-48 159
MS.gene69123.t1 MTR_8g089020 47.205 161 63 3 81 241 21 159 7.66e-45 148
MS.gene69123.t1 MTR_5g022350 50.000 162 70 5 1 156 66 222 1.23e-43 147
MS.gene69123.t1 MTR_2g067990 42.920 226 93 10 29 248 29 224 2.26e-43 157
MS.gene69123.t1 MTR_5g023850 36.437 247 112 9 12 250 11 220 1.14e-39 137
MS.gene69123.t1 MTR_2g067970 43.617 188 95 8 69 249 2 185 2.40e-39 145
MS.gene69123.t1 MTR_2g063150 32.500 240 150 5 12 242 12 248 9.08e-39 135
MS.gene69123.t1 MTR_1g062390 31.621 253 152 6 6 250 3 242 4.65e-30 112
MS.gene69123.t1 MTR_8g096910 43.382 136 66 4 12 146 9 134 4.04e-28 105
MS.gene69123.t1 MTR_7g076360 33.484 221 81 5 24 242 5 161 3.51e-27 103
MS.gene69123.t1 MTR_8g096920 45.185 135 63 4 14 146 6 131 3.92e-26 100
MS.gene69123.t1 MTR_3g081550 44.792 96 50 3 109 202 15 109 9.29e-13 63.5
MS.gene69123.t1 MTR_1g062640 35.374 147 85 6 22 166 8 146 1.07e-12 64.3
MS.gene69123.t1 MTR_5g068670 46.753 77 37 3 64 139 12 85 1.02e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69123.t1 AT1G75030 65.272 239 80 3 13 249 9 246 6.33e-112 322
MS.gene69123.t1 AT1G75050 66.387 238 74 4 14 247 9 244 6.73e-111 319
MS.gene69123.t1 AT1G75040 60.166 241 92 4 6 246 3 239 5.84e-103 299
MS.gene69123.t1 AT1G19320 59.839 249 93 5 1 245 1 246 4.23e-96 281
MS.gene69123.t1 AT1G73620 56.000 225 94 3 24 246 39 260 3.50e-88 262
MS.gene69123.t1 AT1G18250 55.111 225 96 3 24 246 18 239 3.06e-87 259
MS.gene69123.t1 AT4G38660 55.328 244 99 6 9 250 14 249 7.74e-87 261
MS.gene69123.t1 AT1G18250 53.744 227 100 3 22 246 17 240 1.00e-86 258
MS.gene69123.t1 AT4G24180 55.466 247 97 7 9 247 11 252 2.99e-85 254
MS.gene69123.t1 AT4G24180 55.200 250 99 7 9 250 11 255 5.63e-85 256
MS.gene69123.t1 AT4G24180 54.582 251 98 7 9 247 11 257 7.81e-85 253
MS.gene69123.t1 AT4G24180 54.331 254 100 7 9 250 11 260 1.09e-84 255
MS.gene69123.t1 AT4G38660 56.828 227 90 5 26 250 7 227 2.74e-84 254
MS.gene69123.t1 AT1G77700 51.477 237 100 4 16 245 43 271 3.70e-82 249
MS.gene69123.t1 AT1G77700 51.477 237 100 4 16 245 43 271 1.56e-81 247
MS.gene69123.t1 AT5G24620 52.209 249 111 4 6 246 3 251 5.10e-81 249
MS.gene69123.t1 AT5G24620 52.209 249 111 4 6 246 58 306 1.03e-80 250
MS.gene69123.t1 AT5G24620 52.209 249 111 4 6 246 79 327 1.30e-80 250
MS.gene69123.t1 AT1G77700 52.941 221 96 3 25 245 87 299 2.31e-80 245
MS.gene69123.t1 AT2G17860 53.469 245 105 6 13 249 9 252 9.26e-78 235
MS.gene69123.t1 AT1G75800 53.498 243 104 7 12 247 9 249 1.12e-77 238
MS.gene69123.t1 AT4G36010 54.310 232 96 5 25 247 21 251 2.39e-76 233
MS.gene69123.t1 AT4G36010 54.310 232 96 5 25 247 21 251 2.39e-76 233
MS.gene69123.t1 AT4G24180 54.545 231 92 7 9 231 11 236 5.50e-76 233
MS.gene69123.t1 AT4G24180 53.617 235 93 7 9 231 11 241 6.82e-76 233
MS.gene69123.t1 AT1G20030 53.097 226 98 6 29 247 5 229 4.14e-73 225
MS.gene69123.t1 AT1G20030 53.097 226 98 6 29 247 22 246 4.77e-73 226
MS.gene69123.t1 AT5G40020 44.177 249 137 2 1 247 1 249 8.35e-73 223
MS.gene69123.t1 AT4G38670 49.590 244 111 8 14 246 5 247 1.12e-69 216
MS.gene69123.t1 AT4G38670 49.590 244 111 8 14 246 5 247 1.12e-69 216
MS.gene69123.t1 AT5G02140 45.607 239 127 3 13 249 7 244 2.50e-68 213
MS.gene69123.t1 AT5G02140 45.763 236 125 3 13 246 7 241 3.47e-68 211
MS.gene69123.t1 AT4G38670 51.339 224 102 7 29 246 9 231 8.16e-68 210
MS.gene69123.t1 AT5G38280 46.559 247 121 8 10 246 5 250 4.96e-63 209
MS.gene69123.t1 AT5G38280 46.559 247 121 8 10 246 5 250 7.39e-63 208
MS.gene69123.t1 AT2G28790 42.000 250 138 6 1 245 1 248 1.23e-58 186
MS.gene69123.t1 AT2G28790 42.000 250 138 6 1 245 26 273 1.44e-58 187
MS.gene69123.t1 AT4G11650 42.437 238 116 7 13 249 9 226 9.13e-56 179
MS.gene69123.t1 AT4G18253 39.431 246 136 6 7 247 2 239 1.25e-53 173
MS.gene69123.t1 AT4G36000 56.667 150 56 4 102 250 1 142 4.31e-51 166
MS.gene69123.t1 AT4G36000 56.667 150 56 4 102 250 1 142 4.31e-51 166
MS.gene69123.t1 AT1G70250 41.558 231 120 7 29 250 147 371 1.36e-46 165
MS.gene69123.t1 AT4G18250 40.741 243 132 8 11 248 39 274 2.41e-45 161
MS.gene69123.t1 AT5G24620 53.333 120 50 2 133 246 15 134 3.08e-34 125
MS.gene69123.t1 AT2G24810 58.974 78 31 1 168 245 116 192 8.55e-25 97.8

Find 85 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGCTGGTCTGGACGTTTC+TGG 0.041189 3.4:+96496652 MS.gene69123:CDS
ATCTGGCCGGGAACACTTTC+CGG 0.214212 3.4:+96496555 MS.gene69123:CDS
CGCCGCACACGCACTCTTAC+AGG 0.259177 3.4:-96496979 None:intergenic
TCAAGCACTTGCACATGTTC+TGG 0.269659 3.4:+96497128 MS.gene69123:CDS
CGGAAAGGTGTTTGAGTTAG+TGG 0.339140 3.4:-96496362 None:intergenic
CTTTGCAGGTAATGTAGCTT+CGG 0.347218 3.4:+96496494 MS.gene69123:intron
AGGCTGGTCTGGACGTTTCT+GGG 0.353237 3.4:+96496653 MS.gene69123:CDS
ACTGCTCCAGCAGGCTGGTC+TGG 0.372462 3.4:+96496642 MS.gene69123:CDS
TCATTGTCCAGCGGAGTTGC+AGG 0.378054 3.4:+96496929 MS.gene69123:CDS
TTTGCAGGTAATGTAGCTTC+GGG 0.380079 3.4:+96496495 MS.gene69123:intron
AGACTTCTATGACGTGAGTT+TGG 0.392352 3.4:+96496818 MS.gene69123:CDS
ACTTCGACGGTGCTGGTAAC+GGG 0.395193 3.4:+96496691 MS.gene69123:CDS
AAGTAGTTCAGCACCGTTGC+CGG 0.396672 3.4:-96496574 None:intergenic
CCGTTGCCGGAAAGTGTTCC+CGG 0.398738 3.4:-96496561 None:intergenic
TTTACGATCGGAAGCGGGAA+TGG 0.433505 3.4:+96496789 MS.gene69123:CDS
GTAAACTCCGCCAACGTCAC+TGG 0.437210 3.4:-96496771 None:intergenic
GATGGTTACAATGTGGGGAT+AGG 0.440861 3.4:+96496843 MS.gene69123:CDS
CTGACAATCACCTGTTCCTC+TGG 0.440961 3.4:-96496877 None:intergenic
ACCGTTGCATTTCAATCCTC+CGG 0.443760 3.4:-96496736 None:intergenic
ATACAAGCAACCAGAGGAAC+AGG 0.461854 3.4:+96496867 MS.gene69123:CDS
ACCGTTGTAACAACACAATC+TGG 0.462686 3.4:+96496538 MS.gene69123:CDS
TTTGAATTCACTGCTCCAGC+AGG 0.465707 3.4:+96496633 MS.gene69123:CDS
GTGCTGAACTACTTGGTGAC+GGG 0.474840 3.4:+96496583 MS.gene69123:CDS
GAGTTGCAGGTAACAGAGGA+AGG 0.484221 3.4:+96496942 MS.gene69123:CDS
GGCTGCAACTTCGACGGTGC+TGG 0.484415 3.4:+96496684 MS.gene69123:CDS
AAACGTCCAGACCAGCCTGC+TGG 0.486502 3.4:-96496648 None:intergenic
ATGGTTACAATGTGGGGATA+GGG 0.488169 3.4:+96496844 MS.gene69123:CDS
AACTTCGACGGTGCTGGTAA+CGG 0.498037 3.4:+96496690 MS.gene69123:CDS
ATCCTTCTGCTGCTTCTACT+AGG 0.498370 3.4:+96496391 MS.gene69123:CDS
GGACGTTTCTGGGGTAGAAC+CGG 0.500730 3.4:+96496663 MS.gene69123:CDS
TCTGTTACCTGCAACTCCGC+TGG 0.503530 3.4:-96496936 None:intergenic
TTGGTGGATGGTTACAATGT+GGG 0.504388 3.4:+96496837 MS.gene69123:CDS
TGCTCCTCCAGTGACGTTGG+CGG 0.507952 3.4:+96496764 MS.gene69123:CDS
AATTCACTGCTCCAGCAGGC+TGG 0.511094 3.4:+96496637 MS.gene69123:CDS
CCGGGAACACTTTCCGGCAA+CGG 0.521195 3.4:+96496561 MS.gene69123:CDS
TTGTAACAACACAATCTGGC+CGG 0.526132 3.4:+96496542 MS.gene69123:CDS
GCGGAGTTTACGATCGGAAG+CGG 0.539163 3.4:+96496783 MS.gene69123:CDS
GGCAACGGTGCTGAACTACT+TGG 0.539389 3.4:+96496576 MS.gene69123:CDS
GTGAATTCAAAAGATGATCC+TGG 0.540487 3.4:-96496621 None:intergenic
CGGAGTTTACGATCGGAAGC+GGG 0.541171 3.4:+96496784 MS.gene69123:CDS
GCCAGATTGTGTTGTTACAA+CGG 0.555322 3.4:-96496539 None:intergenic
ACAGGTGATTGTCAGTATGC+AGG 0.556822 3.4:+96496885 MS.gene69123:CDS
TGTAACAACACAATCTGGCC+GGG 0.563673 3.4:+96496543 MS.gene69123:CDS
AACATCTCTGAGTACTGTGT+TGG 0.565049 3.4:-96497059 None:intergenic
CTTCTATGACGTGAGTTTGG+TGG 0.567400 3.4:+96496821 MS.gene69123:CDS
GGATTGAAATGCAACGGTGG+AGG 0.575754 3.4:+96496741 MS.gene69123:CDS
TGGTGGATGGTTACAATGTG+GGG 0.575782 3.4:+96496838 MS.gene69123:CDS
CTGTGGACTCGAATGTTCAC+CGG 0.577729 3.4:-96497027 None:intergenic
GGTAACGGGAATTGCATCAC+AGG 0.579922 3.4:+96496705 MS.gene69123:CDS
GTTGCAGGTAACAGAGGAAG+GGG 0.591850 3.4:+96496944 MS.gene69123:CDS
AGCAGCAGAAGGATGATGAA+CGG 0.593386 3.4:-96496382 None:intergenic
TTGAATGTGGTATGGCTAGG+AGG 0.593673 3.4:-96497186 None:intergenic
GGTGCTGAACTACTTGGTGA+CGG 0.595292 3.4:+96496582 MS.gene69123:CDS
TATGGCTAGGAGGAAGCAGT+TGG 0.600723 3.4:-96497176 None:intergenic
GGTTGTGTTGCGGATTTGAA+CGG 0.603815 3.4:+96496906 MS.gene69123:CDS
AGCACCGTCGAAGTTGCAGC+CGG 0.605393 3.4:-96496682 None:intergenic
ACCGGTGCAACAAAACTCCT+CGG 0.606971 3.4:-96497009 None:intergenic
AGCGGAGTTGCAGGTAACAG+AGG 0.608898 3.4:+96496938 MS.gene69123:CDS
TGTGTTGGACTGCAACTCTG+TGG 0.610848 3.4:-96497044 None:intergenic
AGGTGCTCCTCCAGTGACGT+TGG 0.611186 3.4:+96496761 MS.gene69123:CDS
TGCTGAACTACTTGGTGACG+GGG 0.611875 3.4:+96496584 MS.gene69123:CDS
ACCGGAGGATTGAAATGCAA+CGG 0.612318 3.4:+96496735 MS.gene69123:CDS
CACCTAGTAGAAGCAGCAGA+AGG 0.613519 3.4:-96496393 None:intergenic
TATGACGTGAGTTTGGTGGA+TGG 0.616012 3.4:+96496825 MS.gene69123:CDS
GGCTGGTCTGGACGTTTCTG+GGG 0.623771 3.4:+96496654 MS.gene69123:CDS
AGAACCGGCTGCAACTTCGA+CGG 0.626510 3.4:+96496678 MS.gene69123:CDS
TTTGGTGGATGGTTACAATG+TGG 0.629478 3.4:+96496836 MS.gene69123:CDS
ACGTTGGCGGAGTTTACGAT+CGG 0.633255 3.4:+96496777 MS.gene69123:CDS
TAAGCATAACTGTATGCAGA+GGG 0.634541 3.4:-96497095 None:intergenic
TGCATCACAGGAGACTGCAC+CGG 0.636449 3.4:+96496717 MS.gene69123:CDS
TGCCTGTAAGAGTGCGTGTG+CGG 0.637848 3.4:+96496977 MS.gene69123:CDS
ATCACAGGAGACTGCACCGG+AGG 0.642936 3.4:+96496720 MS.gene69123:CDS
AGTTGCAGGTAACAGAGGAA+GGG 0.644950 3.4:+96496943 MS.gene69123:CDS
CAGAAGGATGATGAACGGAA+AGG 0.647623 3.4:-96496377 None:intergenic
AACTCCGCCAACGTCACTGG+AGG 0.649133 3.4:-96496768 None:intergenic
TTGCAGGTAATGTAGCTTCG+GGG 0.669955 3.4:+96496496 MS.gene69123:intron
TCAGTATGCAGGTTGTGTTG+CGG 0.671374 3.4:+96496896 MS.gene69123:CDS
GCTGAACTACTTGGTGACGG+GGG 0.674143 3.4:+96496585 MS.gene69123:CDS
TTTGAACGGTCATTGTCCAG+CGG 0.681723 3.4:+96496920 MS.gene69123:CDS
GTGTGCGGCGTTTAATACCG+AGG 0.685026 3.4:+96496992 MS.gene69123:CDS
TTGCAGGTAACAGAGGAAGG+GGG 0.708103 3.4:+96496945 MS.gene69123:CDS
ATAAGCATAACTGTATGCAG+AGG 0.711516 3.4:-96497096 None:intergenic
GGAGGATTGAAATGCAACGG+TGG 0.716120 3.4:+96496738 MS.gene69123:CDS
ATAGGGATACAAGCAACCAG+AGG 0.737024 3.4:+96496861 MS.gene69123:CDS
AATTCAAAAGATGATCCTGG+CGG 0.756655 3.4:-96496618 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTACTTTACAAAAGACA+TGG - chr3.4:96496448-96496467 None:intergenic 20.0%
!!! TTGTTTTTAAACTGATAGTA+TGG + chr3.4:96496467-96496486 MS.gene69123:intron 20.0%
! ACAAAAAGTGATGAGATAAT+CGG - chr3.4:96497156-96497175 None:intergenic 25.0%
AATTCAAAAGATGATCCTGG+CGG - chr3.4:96496621-96496640 None:intergenic 35.0%
ATAAGCATAACTGTATGCAG+AGG - chr3.4:96497099-96497118 None:intergenic 35.0%
GTGAATTCAAAAGATGATCC+TGG - chr3.4:96496624-96496643 None:intergenic 35.0%
TAAGCATAACTGTATGCAGA+GGG - chr3.4:96497098-96497117 None:intergenic 35.0%
! GATAGTATGGTTTTCTTTGC+AGG + chr3.4:96496480-96496499 MS.gene69123:intron 35.0%
! GTTGTTACAACGGTTTTCTA+TGG - chr3.4:96496532-96496551 None:intergenic 35.0%
ACCGTTGTAACAACACAATC+TGG + chr3.4:96496538-96496557 MS.gene69123:CDS 40.0%
AGACTTCTATGACGTGAGTT+TGG + chr3.4:96496818-96496837 MS.gene69123:CDS 40.0%
ATGGTTACAATGTGGGGATA+GGG + chr3.4:96496844-96496863 MS.gene69123:CDS 40.0%
CTTTGCAGGTAATGTAGCTT+CGG + chr3.4:96496494-96496513 MS.gene69123:intron 40.0%
TTGTAACAACACAATCTGGC+CGG + chr3.4:96496542-96496561 MS.gene69123:CDS 40.0%
TTTGCAGGTAATGTAGCTTC+GGG + chr3.4:96496495-96496514 MS.gene69123:intron 40.0%
! AACATCTCTGAGTACTGTGT+TGG - chr3.4:96497062-96497081 None:intergenic 40.0%
! GCCAGATTGTGTTGTTACAA+CGG - chr3.4:96496542-96496561 None:intergenic 40.0%
! TTGGTGGATGGTTACAATGT+GGG + chr3.4:96496837-96496856 MS.gene69123:CDS 40.0%
! TTTGGTGGATGGTTACAATG+TGG + chr3.4:96496836-96496855 MS.gene69123:CDS 40.0%
ACAGGTGATTGTCAGTATGC+AGG + chr3.4:96496885-96496904 MS.gene69123:CDS 45.0%
ACCGGAGGATTGAAATGCAA+CGG + chr3.4:96496735-96496754 MS.gene69123:CDS 45.0%
ACCGTTGCATTTCAATCCTC+CGG - chr3.4:96496739-96496758 None:intergenic 45.0%
AGCAGCAGAAGGATGATGAA+CGG - chr3.4:96496385-96496404 None:intergenic 45.0%
AGTTGCAGGTAACAGAGGAA+GGG + chr3.4:96496943-96496962 MS.gene69123:CDS 45.0%
ATACAAGCAACCAGAGGAAC+AGG + chr3.4:96496867-96496886 MS.gene69123:CDS 45.0%
ATAGGGATACAAGCAACCAG+AGG + chr3.4:96496861-96496880 MS.gene69123:CDS 45.0%
CAGAAGGATGATGAACGGAA+AGG - chr3.4:96496380-96496399 None:intergenic 45.0%
CTTCTATGACGTGAGTTTGG+TGG + chr3.4:96496821-96496840 MS.gene69123:CDS 45.0%
GATGGTTACAATGTGGGGAT+AGG + chr3.4:96496843-96496862 MS.gene69123:CDS 45.0%
GGTTGTGTTGCGGATTTGAA+CGG + chr3.4:96496906-96496925 MS.gene69123:CDS 45.0%
TCAAGCACTTGCACATGTTC+TGG + chr3.4:96497128-96497147 MS.gene69123:CDS 45.0%
TCAGTATGCAGGTTGTGTTG+CGG + chr3.4:96496896-96496915 MS.gene69123:CDS 45.0%
TGTAACAACACAATCTGGCC+GGG + chr3.4:96496543-96496562 MS.gene69123:CDS 45.0%
TTGCAGGTAATGTAGCTTCG+GGG + chr3.4:96496496-96496515 MS.gene69123:intron 45.0%
TTTGAACGGTCATTGTCCAG+CGG + chr3.4:96496920-96496939 MS.gene69123:CDS 45.0%
TTTGAATTCACTGCTCCAGC+AGG + chr3.4:96496633-96496652 MS.gene69123:CDS 45.0%
! ATCCTTCTGCTGCTTCTACT+AGG + chr3.4:96496391-96496410 MS.gene69123:CDS 45.0%
! TATGACGTGAGTTTGGTGGA+TGG + chr3.4:96496825-96496844 MS.gene69123:CDS 45.0%
! TGGTGGATGGTTACAATGTG+GGG + chr3.4:96496838-96496857 MS.gene69123:CDS 45.0%
!! CGGAAAGGTGTTTGAGTTAG+TGG - chr3.4:96496365-96496384 None:intergenic 45.0%
AAGTAGTTCAGCACCGTTGC+CGG - chr3.4:96496577-96496596 None:intergenic 50.0%
ACCGGTGCAACAAAACTCCT+CGG - chr3.4:96497012-96497031 None:intergenic 50.0%
ACGTTGGCGGAGTTTACGAT+CGG + chr3.4:96496777-96496796 MS.gene69123:CDS 50.0%
CACCTAGTAGAAGCAGCAGA+AGG - chr3.4:96496396-96496415 None:intergenic 50.0%
CTGACAATCACCTGTTCCTC+TGG - chr3.4:96496880-96496899 None:intergenic 50.0%
CTGTGGACTCGAATGTTCAC+CGG - chr3.4:96497030-96497049 None:intergenic 50.0%
GAGTTGCAGGTAACAGAGGA+AGG + chr3.4:96496942-96496961 MS.gene69123:CDS 50.0%
GGAGGATTGAAATGCAACGG+TGG + chr3.4:96496738-96496757 MS.gene69123:CDS 50.0%
GGATTGAAATGCAACGGTGG+AGG + chr3.4:96496741-96496760 MS.gene69123:CDS 50.0%
GTTGCAGGTAACAGAGGAAG+GGG + chr3.4:96496944-96496963 MS.gene69123:CDS 50.0%
TGTGTTGGACTGCAACTCTG+TGG - chr3.4:96497047-96497066 None:intergenic 50.0%
TTGCAGGTAACAGAGGAAGG+GGG + chr3.4:96496945-96496964 MS.gene69123:CDS 50.0%
TTTACGATCGGAAGCGGGAA+TGG + chr3.4:96496789-96496808 MS.gene69123:CDS 50.0%
! GGTGCTGAACTACTTGGTGA+CGG + chr3.4:96496582-96496601 MS.gene69123:CDS 50.0%
! GTGCTGAACTACTTGGTGAC+GGG + chr3.4:96496583-96496602 MS.gene69123:CDS 50.0%
!! AACTTCGACGGTGCTGGTAA+CGG + chr3.4:96496690-96496709 MS.gene69123:CDS 50.0%
!! GGTAACGGGAATTGCATCAC+AGG + chr3.4:96496705-96496724 MS.gene69123:CDS 50.0%
!! TGCTGAACTACTTGGTGACG+GGG + chr3.4:96496584-96496603 MS.gene69123:CDS 50.0%
!!! ACCGAGGAGTTTTGTTGCAC+CGG + chr3.4:96497008-96497027 MS.gene69123:CDS 50.0%
AATTCACTGCTCCAGCAGGC+TGG + chr3.4:96496637-96496656 MS.gene69123:CDS 55.0%
AGAACCGGCTGCAACTTCGA+CGG + chr3.4:96496678-96496697 MS.gene69123:CDS 55.0%
AGCGGAGTTGCAGGTAACAG+AGG + chr3.4:96496938-96496957 MS.gene69123:CDS 55.0%
ATCTGGCCGGGAACACTTTC+CGG + chr3.4:96496555-96496574 MS.gene69123:CDS 55.0%
CGGAGTTTACGATCGGAAGC+GGG + chr3.4:96496784-96496803 MS.gene69123:CDS 55.0%
GCGGAGTTTACGATCGGAAG+CGG + chr3.4:96496783-96496802 MS.gene69123:CDS 55.0%
GGTAACAGAGGAAGGGGGTT+CGG + chr3.4:96496950-96496969 MS.gene69123:CDS 55.0%
GTAAACTCCGCCAACGTCAC+TGG - chr3.4:96496774-96496793 None:intergenic 55.0%
GTGTGCGGCGTTTAATACCG+AGG + chr3.4:96496992-96497011 MS.gene69123:CDS 55.0%
TCATTGTCCAGCGGAGTTGC+AGG + chr3.4:96496929-96496948 MS.gene69123:CDS 55.0%
TCTGTTACCTGCAACTCCGC+TGG - chr3.4:96496939-96496958 None:intergenic 55.0%
TGCATCACAGGAGACTGCAC+CGG + chr3.4:96496717-96496736 MS.gene69123:CDS 55.0%
! GGCAACGGTGCTGAACTACT+TGG + chr3.4:96496576-96496595 MS.gene69123:CDS 55.0%
! TGCCTGTAAGAGTGCGTGTG+CGG + chr3.4:96496977-96496996 MS.gene69123:CDS 55.0%
!! ACTTCGACGGTGCTGGTAAC+GGG + chr3.4:96496691-96496710 MS.gene69123:CDS 55.0%
!! AGGCTGGTCTGGACGTTTCT+GGG + chr3.4:96496653-96496672 MS.gene69123:CDS 55.0%
!! GCTGAACTACTTGGTGACGG+GGG + chr3.4:96496585-96496604 MS.gene69123:CDS 55.0%
!! GGACGTTTCTGGGGTAGAAC+CGG + chr3.4:96496663-96496682 MS.gene69123:CDS 55.0%
AAACGTCCAGACCAGCCTGC+TGG - chr3.4:96496651-96496670 None:intergenic 60.0%
AACAGAGGAAGGGGGTTCGG+TGG + chr3.4:96496953-96496972 MS.gene69123:CDS 60.0%
AACTCCGCCAACGTCACTGG+AGG - chr3.4:96496771-96496790 None:intergenic 60.0%
AGCACCGTCGAAGTTGCAGC+CGG - chr3.4:96496685-96496704 None:intergenic 60.0%
AGGTGCTCCTCCAGTGACGT+TGG + chr3.4:96496761-96496780 MS.gene69123:CDS 60.0%
ATCACAGGAGACTGCACCGG+AGG + chr3.4:96496720-96496739 MS.gene69123:CDS 60.0%
CCGGGAACACTTTCCGGCAA+CGG + chr3.4:96496561-96496580 MS.gene69123:CDS 60.0%
TGCTCCTCCAGTGACGTTGG+CGG + chr3.4:96496764-96496783 MS.gene69123:CDS 60.0%
!! CAGGCTGGTCTGGACGTTTC+TGG + chr3.4:96496652-96496671 MS.gene69123:CDS 60.0%
!! CCGTTGCCGGAAAGTGTTCC+CGG - chr3.4:96496564-96496583 None:intergenic 60.0%
!! GGCTGGTCTGGACGTTTCTG+GGG + chr3.4:96496654-96496673 MS.gene69123:CDS 60.0%
CGCCGCACACGCACTCTTAC+AGG - chr3.4:96496982-96497001 None:intergenic 65.0%
GGCTGCAACTTCGACGGTGC+TGG + chr3.4:96496684-96496703 MS.gene69123:CDS 65.0%
! ACTGCTCCAGCAGGCTGGTC+TGG + chr3.4:96496642-96496661 MS.gene69123:CDS 65.0%
! GGGGGATTTTCTCTGCCGCC+AGG + chr3.4:96496603-96496622 MS.gene69123:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 96496352 96497193 96496352 ID=MS.gene69123
chr3.4 mRNA 96496352 96497193 96496352 ID=MS.gene69123.t1;Parent=MS.gene69123
chr3.4 exon 96496352 96496412 96496352 ID=MS.gene69123.t1.exon1;Parent=MS.gene69123.t1
chr3.4 CDS 96496352 96496412 96496352 ID=cds.MS.gene69123.t1;Parent=MS.gene69123.t1
chr3.4 exon 96496502 96497193 96496502 ID=MS.gene69123.t1.exon2;Parent=MS.gene69123.t1
chr3.4 CDS 96496502 96497193 96496502 ID=cds.MS.gene69123.t1;Parent=MS.gene69123.t1
Gene Sequence

>MS.gene69123

ATGGCTCTTACCACTAACTCAAACACCTTTCCGTTCATCATCCTTCTGCTGCTTCTACTAGGTGAACAAGAAATTCAACACTGATTTTACGTTCCATGTCTTTTGTAAAGTAATTTTGTTTTTAAACTGATAGTATGGTTTTCTTTGCAGGTAATGTAGCTTCGGGGACAATGTTTACCATAGAAAACCGTTGTAACAACACAATCTGGCCGGGAACACTTTCCGGCAACGGTGCTGAACTACTTGGTGACGGGGGATTTTCTCTGCCGCCAGGATCATCTTTTGAATTCACTGCTCCAGCAGGCTGGTCTGGACGTTTCTGGGGTAGAACCGGCTGCAACTTCGACGGTGCTGGTAACGGGAATTGCATCACAGGAGACTGCACCGGAGGATTGAAATGCAACGGTGGAGGTGCTCCTCCAGTGACGTTGGCGGAGTTTACGATCGGAAGCGGGAATGGAGATAAAGACTTCTATGACGTGAGTTTGGTGGATGGTTACAATGTGGGGATAGGGATACAAGCAACCAGAGGAACAGGTGATTGTCAGTATGCAGGTTGTGTTGCGGATTTGAACGGTCATTGTCCAGCGGAGTTGCAGGTAACAGAGGAAGGGGGTTCGGTGGTTGCCTGTAAGAGTGCGTGTGCGGCGTTTAATACCGAGGAGTTTTGTTGCACCGGTGAACATTCGAGTCCACAGAGTTGCAGTCCAACACAGTACTCAGAGATGTTCAAGACTGTGTGTCCCTCTGCATACAGTTATGCTTATGATGATGCTTCAAGCACTTGCACATGTTCTGGATCCGATTATCTCATCACTTTTTGTCCAACTGCTTCCTCCTAG
Protein sequence

>MS.gene69123.t1

MALTTNSNTFPFIILLLLLLGNVASGTMFTIENRCNNTIWPGTLSGNGAELLGDGGFSLPPGSSFEFTAPAGWSGRFWGRTGCNFDGAGNGNCITGDCTGGLKCNGGGAPPVTLAEFTIGSGNGDKDFYDVSLVDGYNVGIGIQATRGTGDCQYAGCVADLNGHCPAELQVTEEGGSVVACKSACAAFNTEEFCCTGEHSSPQSCSPTQYSEMFKTVCPSAYSYAYDDASSTCTCSGSDYLITFCPTASS