Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074397.t1 | XP_013461062.1 | 91.6 | 620 | 40 | 3 | 95 | 706 | 3 | 618 | 0.00E+00 | 1128.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074397.t1 | Q9SU72 | 39.3 | 639 | 312 | 15 | 105 | 701 | 9 | 613 | 4.2e-114 | 413.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074397.t1 | A0A072V056 | 91.6 | 620 | 40 | 3 | 95 | 706 | 3 | 618 | 0.0e+00 | 1128.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059774 | MS.gene074397 | 0.80212 | 6.52E-49 | -1.69E-46 |
| MS.gene060697 | MS.gene074397 | 0.801381 | 9.25E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074397 | MS.gene022252 | PPI |
| MS.gene25879 | MS.gene074397 | PPI |
| MS.gene70582 | MS.gene074397 | PPI |
| MS.gene38408 | MS.gene074397 | PPI |
| MS.gene074397 | MS.gene38408 | PPI |
| MS.gene074397 | MS.gene062716 | PPI |
| MS.gene074397 | MS.gene25909 | PPI |
| MS.gene074397 | MS.gene014545 | PPI |
| MS.gene074397 | MS.gene26931 | PPI |
| MS.gene044112 | MS.gene074397 | PPI |
| MS.gene074397 | MS.gene69123 | PPI |
| MS.gene24315 | MS.gene074397 | PPI |
| MS.gene074397 | MS.gene022225 | PPI |
| MS.gene42360 | MS.gene074397 | PPI |
| MS.gene38414 | MS.gene074397 | PPI |
| MS.gene38392 | MS.gene074397 | PPI |
| MS.gene074397 | MS.gene27345 | PPI |
| MS.gene38399 | MS.gene074397 | PPI |
| MS.gene38404 | MS.gene074397 | PPI |
| MS.gene074397 | MS.gene044112 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074397.t1 | MTR_3g078633 | 91.640 | 622 | 40 | 3 | 93 | 706 | 1 | 618 | 0.0 | 1174 |
| MS.gene074397.t1 | MTR_3g078633 | 92.039 | 515 | 33 | 2 | 196 | 706 | 36 | 546 | 0.0 | 985 |
| MS.gene074397.t1 | MTR_3g079340 | 50.318 | 628 | 280 | 13 | 98 | 706 | 2 | 616 | 0.0 | 586 |
| MS.gene074397.t1 | MTR_8g494200 | 25.081 | 614 | 362 | 23 | 126 | 690 | 43 | 607 | 2.70e-47 | 177 |
| MS.gene074397.t1 | MTR_3g081450 | 76.238 | 101 | 20 | 1 | 591 | 691 | 32 | 128 | 1.54e-45 | 160 |
| MS.gene074397.t1 | MTR_0095s0020 | 26.686 | 341 | 186 | 13 | 209 | 526 | 155 | 454 | 1.95e-25 | 112 |
| MS.gene074397.t1 | MTR_3g467360 | 26.816 | 358 | 205 | 17 | 364 | 689 | 215 | 547 | 4.06e-21 | 98.2 |
| MS.gene074397.t1 | MTR_3g467360 | 26.816 | 358 | 205 | 17 | 364 | 689 | 209 | 541 | 4.87e-21 | 98.2 |
| MS.gene074397.t1 | MTR_6g007985 | 24.576 | 354 | 217 | 13 | 363 | 687 | 133 | 465 | 5.17e-19 | 91.3 |
| MS.gene074397.t1 | MTR_6g008015 | 24.576 | 354 | 217 | 13 | 363 | 687 | 210 | 542 | 5.69e-19 | 91.7 |
| MS.gene074397.t1 | MTR_6g008055 | 24.251 | 367 | 195 | 15 | 366 | 688 | 213 | 540 | 5.48e-15 | 79.0 |
| MS.gene074397.t1 | MTR_6g007975 | 24.863 | 366 | 202 | 17 | 363 | 688 | 210 | 542 | 8.36e-15 | 78.6 |
| MS.gene074397.t1 | MTR_6g007980 | 22.817 | 355 | 223 | 13 | 364 | 689 | 209 | 541 | 9.86e-14 | 75.1 |
| MS.gene074397.t1 | MTR_6g007980 | 23.034 | 356 | 222 | 13 | 364 | 689 | 209 | 542 | 1.23e-13 | 74.7 |
| MS.gene074397.t1 | MTR_6g007980 | 22.969 | 357 | 222 | 13 | 364 | 689 | 209 | 543 | 1.33e-13 | 74.7 |
| MS.gene074397.t1 | MTR_8g011610 | 41.379 | 87 | 48 | 1 | 204 | 287 | 225 | 311 | 6.32e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074397.t1 | AT3G48090 | 39.280 | 639 | 312 | 15 | 105 | 701 | 9 | 613 | 4.16e-140 | 424 |
| MS.gene074397.t1 | AT3G48080 | 37.727 | 607 | 316 | 15 | 127 | 695 | 29 | 611 | 4.80e-129 | 396 |
| MS.gene074397.t1 | AT3G48090 | 41.604 | 536 | 243 | 12 | 204 | 701 | 2 | 505 | 6.91e-128 | 389 |
| MS.gene074397.t1 | AT3G52430 | 25.356 | 351 | 205 | 13 | 356 | 672 | 175 | 502 | 4.77e-23 | 104 |
| MS.gene074397.t1 | AT5G14930 | 28.319 | 226 | 127 | 9 | 490 | 689 | 293 | 509 | 2.23e-14 | 77.0 |
Find 153 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAATATCTTTGAATCTT+TGG | 0.137148 | 3.4:-75151845 | None:intergenic |
| CCAAAGATTCAAAGATATTT+TGG | 0.139370 | 3.4:+75151845 | MS.gene074397:CDS |
| GTTACTCAGAATCATGTTTA+TGG | 0.160363 | 3.4:+75154466 | MS.gene074397:CDS |
| TAATGCATGATTGTTCTTTA+TGG | 0.162207 | 3.4:-75154674 | None:intergenic |
| GGGATACGATCGGAAGATTT+TGG | 0.194261 | 3.4:-75152625 | None:intergenic |
| CCTCCCATCTGCATTACTTT+TGG | 0.239470 | 3.4:+75152646 | MS.gene074397:CDS |
| GGCTATTCTGGCAACACTTT+GGG | 0.244937 | 3.4:+75152582 | MS.gene074397:CDS |
| GTCATTTAAGGCTATGTTAA+TGG | 0.251285 | 3.4:-75153280 | None:intergenic |
| GCTCATGAATGATTTGCTTT+TGG | 0.251739 | 3.4:-75152836 | None:intergenic |
| ATGCTACAAGGAGAGAAAAT+TGG | 0.262993 | 3.4:+75152701 | MS.gene074397:CDS |
| GGCTAGAACTTGCAGGAGTA+TGG | 0.273354 | 3.4:+75154205 | MS.gene074397:CDS |
| TACCAGGCCAAGGTCATTTA+AGG | 0.278195 | 3.4:-75153292 | None:intergenic |
| TCGTTCCCTTCTAAGTCTTC+TGG | 0.280228 | 3.4:-75154264 | None:intergenic |
| TGGTGGTCCAGTGGCTATTC+TGG | 0.280884 | 3.4:+75152570 | MS.gene074397:CDS |
| CCGTGATGGACGTGTTTATA+TGG | 0.287982 | 3.4:+75154368 | MS.gene074397:CDS |
| GGCTGATAAGGATGTGTTTA+AGG | 0.289164 | 3.4:+75154596 | MS.gene074397:CDS |
| ACATTTGCTTGGAAATCTTC+CGG | 0.306152 | 3.4:-75154177 | None:intergenic |
| AGTTTCACCAAAAGTTGTTT+TGG | 0.309827 | 3.4:-75151745 | None:intergenic |
| TGGTTTCTTGTGAGCCTTCA+AGG | 0.321792 | 3.4:-75151640 | None:intergenic |
| TGGTATTCCAAAACAACTTT+TGG | 0.322409 | 3.4:+75151738 | MS.gene074397:CDS |
| TTGTCTGAGCATACTACTTC+AGG | 0.335540 | 3.4:+75153243 | MS.gene074397:CDS |
| TGTCATATCTCATCACAAAA+TGG | 0.352184 | 3.4:-75152738 | None:intergenic |
| CATCAGGTGCTTTCAAAGAT+TGG | 0.360920 | 3.4:+75151718 | MS.gene074397:CDS |
| GAACTTCCAGAAGACTTAGA+AGG | 0.361685 | 3.4:+75154258 | MS.gene074397:CDS |
| ACTTAGAAGGGAACGAAGAT+TGG | 0.364202 | 3.4:+75154271 | MS.gene074397:CDS |
| TTACTCAGAATCATGTTTAT+GGG | 0.367047 | 3.4:+75154467 | MS.gene074397:CDS |
| ACATGCTGCTTGTAGGCTAA+TGG | 0.368160 | 3.4:+75152936 | MS.gene074397:CDS |
| TGTTGTTCCTCCGAGGCGTC+GGG | 0.371534 | 3.4:-75150682 | None:intergenic |
| CATTTGCTTGGAAATCTTCC+GGG | 0.374664 | 3.4:-75154176 | None:intergenic |
| TAAGTTCCAAAGGGTCTATA+AGG | 0.375128 | 3.4:-75153009 | None:intergenic |
| TTGAGTCCTTATAGACCCTT+TGG | 0.379079 | 3.4:+75153003 | MS.gene074397:CDS |
| AGAGGAGCTAGGAGGATTCT+TGG | 0.379820 | 3.4:-75152766 | None:intergenic |
| TAGAAGACTAGTTGAGCCTT+TGG | 0.383000 | 3.4:+75154314 | MS.gene074397:CDS |
| TCACAAGACATGCTGCTTGT+AGG | 0.383836 | 3.4:+75152929 | MS.gene074397:CDS |
| TCAAGCAGCTGCAGCATTAG+AGG | 0.386121 | 3.4:+75154014 | MS.gene074397:CDS |
| GTCATTTGATGCGTCCTTGA+AGG | 0.386377 | 3.4:+75151626 | MS.gene074397:CDS |
| CTAAAGGAGGAAGGCCAAAA+AGG | 0.396329 | 3.4:+75154391 | MS.gene074397:CDS |
| CATGCTGCTTGTAGGCTAAT+GGG | 0.400385 | 3.4:+75152937 | MS.gene074397:CDS |
| GTTCCCTATGCGCTCTCCTA+CGG | 0.408501 | 3.4:+75150721 | MS.gene074397:CDS |
| TCTAGAAGGTAGTGTCTCTC+TGG | 0.408942 | 3.4:-75151660 | None:intergenic |
| ATCATCAGCTTTCCAGCATC+AGG | 0.410129 | 3.4:+75151702 | MS.gene074397:CDS |
| TGGCTATTCTGGCAACACTT+TGG | 0.417209 | 3.4:+75152581 | MS.gene074397:CDS |
| TGCTACAAGGAGAGAAAATT+GGG | 0.419960 | 3.4:+75152702 | MS.gene074397:CDS |
| ACATCATCAAAAGGCTTGTC+AGG | 0.423403 | 3.4:-75154516 | None:intergenic |
| AACGAAGATTGGATTAAGAT+AGG | 0.426436 | 3.4:+75154282 | MS.gene074397:CDS |
| ATCAGTCTGCTCCTCCTCCA+TGG | 0.430585 | 3.4:+75150590 | MS.gene074397:CDS |
| GTACAGAGGCTAGAACTTGC+AGG | 0.431181 | 3.4:+75154198 | MS.gene074397:CDS |
| CTAGCCTCTGTACATTTGCT+TGG | 0.431295 | 3.4:-75154188 | None:intergenic |
| TGTTGTGTACTTAGACCAAC+TGG | 0.432263 | 3.4:+75153209 | MS.gene074397:CDS |
| TGAGAAAGATGAGGCTGATA+AGG | 0.438651 | 3.4:+75154584 | MS.gene074397:CDS |
| GTGTTGTTCCTCCGAGGCGT+CGG | 0.439710 | 3.4:-75150683 | None:intergenic |
| GGCATATACTGTTGCTGCTC+CGG | 0.442426 | 3.4:+75150612 | MS.gene074397:CDS |
| CTAATTACTATAGACATTCA+AGG | 0.443986 | 3.4:+75154343 | MS.gene074397:CDS |
| TCCGGCTGATCCTCGACATC+AGG | 0.449481 | 3.4:+75150630 | MS.gene074397:CDS |
| TAAGGAAAAGGTTGAGGCAT+TGG | 0.451260 | 3.4:+75154539 | MS.gene074397:CDS |
| AAGAAGCAGATAGTGTTTGC+AGG | 0.453653 | 3.4:+75152538 | MS.gene074397:CDS |
| ATGACCTGCAGAATTGCATC+AGG | 0.455008 | 3.4:-75153084 | None:intergenic |
| ACTCAACGCGTAAGGGAGGC+AGG | 0.459713 | 3.4:-75150753 | None:intergenic |
| CGTCTAATACTCAACGCGTA+AGG | 0.463753 | 3.4:-75150761 | None:intergenic |
| TTTCGTTCACTTAAAAGCAT+TGG | 0.464216 | 3.4:+75151786 | MS.gene074397:CDS |
| GATTGTTCTTTATGGTCTGT+TGG | 0.470082 | 3.4:-75154666 | None:intergenic |
| TTCCCTATGCGCTCTCCTAC+GGG | 0.470741 | 3.4:+75150722 | MS.gene074397:CDS |
| TCTTTGAAAGCACCTGATGC+TGG | 0.472238 | 3.4:-75151714 | None:intergenic |
| CAATGAATATGTAGGTGGAT+AGG | 0.474650 | 3.4:+75152503 | MS.gene074397:intron |
| GGAAAAGGTTGAGGCATTGG+AGG | 0.475367 | 3.4:+75154542 | MS.gene074397:CDS |
| AATGAATATGTAGGTGGATA+GGG | 0.479173 | 3.4:+75152504 | MS.gene074397:intron |
| CATTATGAGAAGAGGGATGA+AGG | 0.484238 | 3.4:+75154441 | MS.gene074397:CDS |
| AGGTTATTACGATGCATTCA+AGG | 0.484769 | 3.4:+75154143 | MS.gene074397:CDS |
| AATATGTGATTTCCAACTAA+AGG | 0.485127 | 3.4:-75152673 | None:intergenic |
| TGGATTCTACGTTTGTTAAG+TGG | 0.487040 | 3.4:+75154631 | MS.gene074397:CDS |
| AACATAGCCTTAAATGACCT+TGG | 0.489141 | 3.4:+75153285 | MS.gene074397:CDS |
| TGCACTACAAGTGGCGATGA+AGG | 0.491111 | 3.4:+75153039 | MS.gene074397:CDS |
| GTGTTTGCAGGACACTCGTC+TGG | 0.495509 | 3.4:+75152550 | MS.gene074397:CDS |
| GCCTGATGTCGAGGATCAGC+CGG | 0.496944 | 3.4:-75150631 | None:intergenic |
| TCAGTCTGCTCCTCCTCCAT+GGG | 0.506524 | 3.4:+75150591 | MS.gene074397:CDS |
| GCAGAAAATGTAAGTTCCAA+AGG | 0.507553 | 3.4:-75153019 | None:intergenic |
| GAGAGCGCATAGGGAACAGA+TGG | 0.510370 | 3.4:-75150715 | None:intergenic |
| GTTGGAACATTATGAGAAGA+GGG | 0.510509 | 3.4:+75154434 | MS.gene074397:CDS |
| TTCCCGTAGGAGAGCGCATA+GGG | 0.514562 | 3.4:-75150724 | None:intergenic |
| TTCATGAGCGAATCGAGTCT+TGG | 0.516950 | 3.4:+75152850 | MS.gene074397:CDS |
| GAAGTAGTATGCTCAGACAA+AGG | 0.517071 | 3.4:-75153240 | None:intergenic |
| CCAGTTCAAAATGTTGTCGC+AGG | 0.517117 | 3.4:-75153164 | None:intergenic |
| AGATAGCCGCTGTGGAGGAT+AGG | 0.526622 | 3.4:+75154073 | MS.gene074397:CDS |
| TGGTAACAATGAAGCTGCTA+AGG | 0.528491 | 3.4:+75151806 | MS.gene074397:CDS |
| TGATGTTAAGGAAAAGGTTG+AGG | 0.529296 | 3.4:+75154533 | MS.gene074397:CDS |
| GCTAGAACTTGCAGGAGTAT+GGG | 0.533503 | 3.4:+75154206 | MS.gene074397:CDS |
| ACAGTATATGCCCATGGAGG+AGG | 0.533675 | 3.4:-75150601 | None:intergenic |
| CCTCTAGCACCCCGACGCCT+CGG | 0.540171 | 3.4:+75150672 | MS.gene074397:CDS |
| AAACCCTGATGCAATTCTGC+AGG | 0.542505 | 3.4:+75153080 | MS.gene074397:CDS |
| ATTCTACGTTTGTTAAGTGG+TGG | 0.545586 | 3.4:+75154634 | MS.gene074397:CDS |
| GTCTAATACTCAACGCGTAA+GGG | 0.546953 | 3.4:-75150760 | None:intergenic |
| GGACGTGTTTATATGGCTAA+AGG | 0.547868 | 3.4:+75154375 | MS.gene074397:CDS |
| AGCCTTAAATGACCTTGGCC+TGG | 0.548198 | 3.4:+75153290 | MS.gene074397:CDS |
| TAGGTATACACAAAGATGGT+TGG | 0.548252 | 3.4:+75154416 | MS.gene074397:CDS |
| GGAGGATAGGATGAAAGCAC+TGG | 0.548822 | 3.4:+75154086 | MS.gene074397:CDS |
| TCATCACAAAATGGAAGAAG+TGG | 0.551943 | 3.4:-75152729 | None:intergenic |
| CAGAAAATGTAAGTTCCAAA+GGG | 0.551969 | 3.4:-75153018 | None:intergenic |
| CGAAAGAAGATAGAGGAGCT+AGG | 0.552232 | 3.4:-75152777 | None:intergenic |
| ATCATGTTTATGGGCTGAAG+TGG | 0.554848 | 3.4:+75154476 | MS.gene074397:CDS |
| AACTTCCAGAAGACTTAGAA+GGG | 0.561390 | 3.4:+75154259 | MS.gene074397:CDS |
| GGTATAGGTATACACAAAGA+TGG | 0.561423 | 3.4:+75154412 | MS.gene074397:CDS |
| AAGCTCTGAAGAAGAAGCTG+AGG | 0.562108 | 3.4:+75153125 | MS.gene074397:CDS |
| GGTTGGAACATTATGAGAAG+AGG | 0.569597 | 3.4:+75154433 | MS.gene074397:CDS |
| ATGTTTATGGGCTGAAGTGG+AGG | 0.574694 | 3.4:+75154479 | MS.gene074397:CDS |
| CAAAAGTAATGCAGATGGGA+GGG | 0.576141 | 3.4:-75152645 | None:intergenic |
| AAGCTGATGATAACTTCTGA+AGG | 0.579352 | 3.4:-75151690 | None:intergenic |
| ACACACATGGCTTCATCAAG+AGG | 0.586314 | 3.4:+75151561 | MS.gene074397:CDS |
| AGAACCAAAAGTAATGCAGA+TGG | 0.587556 | 3.4:-75152650 | None:intergenic |
| TGGAGGAATTTATAAGCAAG+TGG | 0.588253 | 3.4:+75154559 | MS.gene074397:CDS |
| AAGGGTCTATAAGGACTCAA+AGG | 0.589494 | 3.4:-75153000 | None:intergenic |
| AAAGTCATCACTTGAAGATG+AGG | 0.590426 | 3.4:+75151869 | MS.gene074397:CDS |
| CCGAGGCGTCGGGGTGCTAG+AGG | 0.591259 | 3.4:-75150672 | None:intergenic |
| CTTCCCGTAGGAGAGCGCAT+AGG | 0.594087 | 3.4:-75150725 | None:intergenic |
| TAATACTCAACGCGTAAGGG+AGG | 0.603901 | 3.4:-75150757 | None:intergenic |
| ACAAAAGATAGCCGCTGTGG+AGG | 0.604033 | 3.4:+75154068 | MS.gene074397:CDS |
| CAGCTGCAGCATTAGAGGAA+CGG | 0.605468 | 3.4:+75154019 | MS.gene074397:CDS |
| GGAGGAGGAGCAGACTGATG+TGG | 0.607398 | 3.4:-75150586 | None:intergenic |
| AAAGGTTGCATACCAGGCCA+AGG | 0.614366 | 3.4:-75153302 | None:intergenic |
| AGTGTTGCCAGAATAGCCAC+TGG | 0.614618 | 3.4:-75152577 | None:intergenic |
| GGACAGTTACAGAGAAACGC+GGG | 0.617330 | 3.4:+75154107 | MS.gene074397:CDS |
| CTCAACGCGTAAGGGAGGCA+GGG | 0.622469 | 3.4:-75150752 | None:intergenic |
| CGTGTTTATATGGCTAAAGG+AGG | 0.625592 | 3.4:+75154378 | MS.gene074397:CDS |
| TTTATATGGCTAAAGGAGGA+AGG | 0.625809 | 3.4:+75154382 | MS.gene074397:CDS |
| CCAAAAGTAATGCAGATGGG+AGG | 0.626384 | 3.4:-75152646 | None:intergenic |
| CTAGCACCCCGACGCCTCGG+AGG | 0.627649 | 3.4:+75150675 | MS.gene074397:CDS |
| AGGGAACAGATGGAGGCTGA+AGG | 0.628581 | 3.4:-75150705 | None:intergenic |
| AGCGCATAGGGAACAGATGG+AGG | 0.630765 | 3.4:-75150712 | None:intergenic |
| CCATATAAACACGTCCATCA+CGG | 0.630887 | 3.4:-75154368 | None:intergenic |
| TATGAGAAGAGGGATGAAGG+TGG | 0.634440 | 3.4:+75154444 | MS.gene074397:CDS |
| AGGCAGGGCATGCTTCCCGT+AGG | 0.639626 | 3.4:-75150737 | None:intergenic |
| TTTGCAGGACACTCGTCTGG+TGG | 0.640829 | 3.4:+75152553 | MS.gene074397:CDS |
| ACACTCGTCTGGTGGTCCAG+TGG | 0.641162 | 3.4:+75152561 | MS.gene074397:CDS |
| GCAGCAACAGTATATGCCCA+TGG | 0.641778 | 3.4:-75150607 | None:intergenic |
| AGACATTCAAGGAACCGTGA+TGG | 0.644212 | 3.4:+75154354 | MS.gene074397:CDS |
| GAACCAAAAGTAATGCAGAT+GGG | 0.645149 | 3.4:-75152649 | None:intergenic |
| CTGAAGGTGTTGTTCCTCCG+AGG | 0.649537 | 3.4:-75150689 | None:intergenic |
| GTTGTTCCTCCGAGGCGTCG+GGG | 0.659008 | 3.4:-75150681 | None:intergenic |
| TCTGAGCATACTACTTCAGG+TGG | 0.659119 | 3.4:+75153246 | MS.gene074397:CDS |
| TGATGTCGAGCCTGATGTCG+AGG | 0.660834 | 3.4:-75150640 | None:intergenic |
| GCAGATGGGAGGGATACGAT+CGG | 0.665165 | 3.4:-75152635 | None:intergenic |
| TAGTAATTAGCAATATCCAA+AGG | 0.665329 | 3.4:-75154330 | None:intergenic |
| TGACCTGCAGAATTGCATCA+GGG | 0.674595 | 3.4:-75153083 | None:intergenic |
| GCTACAAAAGATAGCCGCTG+TGG | 0.677260 | 3.4:+75154065 | MS.gene074397:CDS |
| CACATGGCTTCATCAAGAGG+TGG | 0.677661 | 3.4:+75151564 | MS.gene074397:CDS |
| ATTCAAGGATCAATTAGACC+CGG | 0.679489 | 3.4:+75154158 | MS.gene074397:CDS |
| ATTTCCAAGCAAATGTACAG+AGG | 0.698435 | 3.4:+75154184 | MS.gene074397:CDS |
| AAGAAGATAGAGGAGCTAGG+AGG | 0.700489 | 3.4:-75152774 | None:intergenic |
| CATCAGGCTCGACATCAGCA+CGG | 0.700957 | 3.4:+75150646 | MS.gene074397:CDS |
| TGGACAGTTACAGAGAAACG+CGG | 0.726781 | 3.4:+75154106 | MS.gene074397:CDS |
| CAAGTGGCATGAGAAAGATG+AGG | 0.734716 | 3.4:+75154575 | MS.gene074397:CDS |
| GACAGTTACAGAGAAACGCG+GGG | 0.746046 | 3.4:+75154108 | MS.gene074397:CDS |
| GCAACAGTATATGCCCATGG+AGG | 0.749714 | 3.4:-75150604 | None:intergenic |
| TTTCATCCTATCCTCCACAG+CGG | 0.790893 | 3.4:-75154079 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGTAAAATTGTAAAAA+TGG | + | chr3.4:75151155-75151174 | MS.gene074397:intron | 10.0% |
| !! | AAATGTAAAATTGTAAAAAT+GGG | + | chr3.4:75151156-75151175 | MS.gene074397:intron | 10.0% |
| !! | AAAAACATATTTAATAACTC+AGG | + | chr3.4:75152351-75152370 | MS.gene074397:intron | 15.0% |
| !! | ATATATTTCAATGAATATGT+AGG | + | chr3.4:75152495-75152514 | MS.gene074397:intron | 15.0% |
| !! | ATATGAGTATATAAAGTAAA+AGG | - | chr3.4:75153403-75153422 | None:intergenic | 15.0% |
| !!! | ACAAAATTAATTTTCAACTT+AGG | - | chr3.4:75152117-75152136 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATCATATTGTTT+AGG | - | chr3.4:75151428-75151447 | None:intergenic | 15.0% |
| !! | CATAATCAGATATAATTGAA+TGG | + | chr3.4:75153730-75153749 | MS.gene074397:intron | 20.0% |
| !! | CTTCTGTAACATTTAAATTA+GGG | + | chr3.4:75150790-75150809 | MS.gene074397:intron | 20.0% |
| !! | GTAGTAATTTATTAGACATA+AGG | - | chr3.4:75153543-75153562 | None:intergenic | 20.0% |
| !! | TTAAGTATAGATGCTATAAA+AGG | - | chr3.4:75151973-75151992 | None:intergenic | 20.0% |
| !! | TTACAACAACTATTATTGTA+CGG | + | chr3.4:75151337-75151356 | MS.gene074397:intron | 20.0% |
| !!! | AAACTAATATTGAGTTGTTT+TGG | - | chr3.4:75152024-75152043 | None:intergenic | 20.0% |
| !!! | AATGTCATGTATAATTTGTT+GGG | + | chr3.4:75152274-75152293 | MS.gene074397:intron | 20.0% |
| !!! | ACTTTAAAATCGACAAAAAT+AGG | - | chr3.4:75153335-75153354 | None:intergenic | 20.0% |
| !!! | CTTTAAAATCGACAAAAATA+GGG | - | chr3.4:75153334-75153353 | None:intergenic | 20.0% |
| ! | AAATTCCGGATTATATAATC+CGG | - | chr3.4:75151213-75151232 | None:intergenic | 25.0% |
| ! | AATATGTGATTTCCAACTAA+AGG | - | chr3.4:75152676-75152695 | None:intergenic | 25.0% |
| ! | AATCAGATATGTCACTAATA+TGG | - | chr3.4:75153447-75153466 | None:intergenic | 25.0% |
| ! | CCAAAATATCTTTGAATCTT+TGG | - | chr3.4:75151848-75151867 | None:intergenic | 25.0% |
| ! | CCTAATTTAAATGTTACAGA+AGG | - | chr3.4:75150792-75150811 | None:intergenic | 25.0% |
| ! | CCTTCTGTAACATTTAAATT+AGG | + | chr3.4:75150789-75150808 | MS.gene074397:intron | 25.0% |
| ! | CTAATTACTATAGACATTCA+AGG | + | chr3.4:75154343-75154362 | MS.gene074397:CDS | 25.0% |
| ! | TAATGCATGATTGTTCTTTA+TGG | - | chr3.4:75154677-75154696 | None:intergenic | 25.0% |
| ! | TAGTAATTAGCAATATCCAA+AGG | - | chr3.4:75154333-75154352 | None:intergenic | 25.0% |
| ! | TATTTCAATGAATATGTAGG+TGG | + | chr3.4:75152498-75152517 | MS.gene074397:intron | 25.0% |
| ! | TCTCATGTATTATGTATGAT+AGG | - | chr3.4:75153809-75153828 | None:intergenic | 25.0% |
| ! | TGTAAAATTGTAAAAATGGG+AGG | + | chr3.4:75151159-75151178 | MS.gene074397:intron | 25.0% |
| ! | TTAACATTAGAGACTCAATT+AGG | + | chr3.4:75152043-75152062 | MS.gene074397:intron | 25.0% |
| ! | TTACTCAGAATCATGTTTAT+GGG | + | chr3.4:75154467-75154486 | MS.gene074397:CDS | 25.0% |
| ! | TTTGAACTGGTAAAAAACTT+TGG | + | chr3.4:75153177-75153196 | MS.gene074397:CDS | 25.0% |
| !! | ATTTTCCGGAATATATAATC+CGG | + | chr3.4:75151238-75151257 | MS.gene074397:intron | 25.0% |
| !! | CAATGTCATGTATAATTTGT+TGG | + | chr3.4:75152273-75152292 | MS.gene074397:intron | 25.0% |
| !! | CCAAAGATTCAAAGATATTT+TGG | + | chr3.4:75151845-75151864 | MS.gene074397:CDS | 25.0% |
| !! | TTTTCCTTAACATCATCAAA+AGG | - | chr3.4:75154528-75154547 | None:intergenic | 25.0% |
| !!! | ATCACATGGATTTGTTAAAA+AGG | + | chr3.4:75152439-75152458 | MS.gene074397:intron | 25.0% |
| !!! | CATTTTTAGCATTAAGGATA+GGG | - | chr3.4:75151999-75152018 | None:intergenic | 25.0% |
| !!! | TCATTTTTAGCATTAAGGAT+AGG | - | chr3.4:75152000-75152019 | None:intergenic | 25.0% |
| !!! | TGCTATTTTTTCATGTTCAA+TGG | - | chr3.4:75153921-75153940 | None:intergenic | 25.0% |
| !!! | TTAACTCCTTGTTTTTTCTT+TGG | - | chr3.4:75151503-75151522 | None:intergenic | 25.0% |
| !!! | TTGGTTCATTTTTAGCATTA+AGG | - | chr3.4:75152005-75152024 | None:intergenic | 25.0% |
| !!! | TTTTGATGATGTTAAGGAAA+AGG | + | chr3.4:75154527-75154546 | MS.gene074397:CDS | 25.0% |
| AAAATCGACAAAAATAGGGA+AGG | - | chr3.4:75153330-75153349 | None:intergenic | 30.0% | |
| AACGAAGATTGGATTAAGAT+AGG | + | chr3.4:75154282-75154301 | MS.gene074397:CDS | 30.0% | |
| AATGAATATGTAGGTGGATA+GGG | + | chr3.4:75152504-75152523 | MS.gene074397:intron | 30.0% | |
| ACAAAAATAGGGAAGGATAA+AGG | - | chr3.4:75153323-75153342 | None:intergenic | 30.0% | |
| ATTGTCCGGATTATATAATC+CGG | + | chr3.4:75151205-75151224 | MS.gene074397:intron | 30.0% | |
| ATTTGATTCATGTACCAAGT+TGG | - | chr3.4:75152081-75152100 | None:intergenic | 30.0% | |
| CAGAAAATGTAAGTTCCAAA+GGG | - | chr3.4:75153021-75153040 | None:intergenic | 30.0% | |
| GAGCAAGAAAATTCCAAATT+TGG | + | chr3.4:75151037-75151056 | MS.gene074397:intron | 30.0% | |
| GTTACTCAGAATCATGTTTA+TGG | + | chr3.4:75154466-75154485 | MS.gene074397:CDS | 30.0% | |
| TGACACTATCAAATATCACA+TGG | + | chr3.4:75152425-75152444 | MS.gene074397:intron | 30.0% | |
| TGTCATATCTCATCACAAAA+TGG | - | chr3.4:75152741-75152760 | None:intergenic | 30.0% | |
| TTGACTTAAAAACTTGAACC+TGG | - | chr3.4:75151390-75151409 | None:intergenic | 30.0% | |
| ! | AAAAGCATATGTCTTCAACT+TGG | + | chr3.4:75151443-75151462 | MS.gene074397:intron | 30.0% |
| ! | ACATATTTTCTCATGCTACA+AGG | + | chr3.4:75152689-75152708 | MS.gene074397:CDS | 30.0% |
| ! | ACATGACATTGACATACTTT+TGG | - | chr3.4:75152264-75152283 | None:intergenic | 30.0% |
| ! | AGTTTCACCAAAAGTTGTTT+TGG | - | chr3.4:75151748-75151767 | None:intergenic | 30.0% |
| ! | ATACTTTTGGTCCTTAAAGA+GGG | - | chr3.4:75152251-75152270 | None:intergenic | 30.0% |
| ! | GTCATTTAAGGCTATGTTAA+TGG | - | chr3.4:75153283-75153302 | None:intergenic | 30.0% |
| ! | GTGCAACTGTTTCAAATTTT+TGG | - | chr3.4:75152804-75152823 | None:intergenic | 30.0% |
| ! | TGGTATTCCAAAACAACTTT+TGG | + | chr3.4:75151738-75151757 | MS.gene074397:CDS | 30.0% |
| ! | TGTGTATACCTATACCTTTT+TGG | - | chr3.4:75154408-75154427 | None:intergenic | 30.0% |
| ! | TTTCGTTCACTTAAAAGCAT+TGG | + | chr3.4:75151786-75151805 | MS.gene074397:CDS | 30.0% |
| ! | TTTTATACTTCGCAATTGTC+CGG | + | chr3.4:75151191-75151210 | MS.gene074397:intron | 30.0% |
| !!! | ATGTTTTTAGTCCCTCTTTA+AGG | + | chr3.4:75152237-75152256 | MS.gene074397:intron | 30.0% |
| !!! | CTCATGAATGATTTGCTTTT+GGG | - | chr3.4:75152838-75152857 | None:intergenic | 30.0% |
| !!! | GTTTAAGGATGTGTTTTTAG+TGG | + | chr3.4:75154611-75154630 | MS.gene074397:CDS | 30.0% |
| AAAGTCATCACTTGAAGATG+AGG | + | chr3.4:75151869-75151888 | MS.gene074397:CDS | 35.0% | |
| AACTTCCAGAAGACTTAGAA+GGG | + | chr3.4:75154259-75154278 | MS.gene074397:CDS | 35.0% | |
| AAGCTGATGATAACTTCTGA+AGG | - | chr3.4:75151693-75151712 | None:intergenic | 35.0% | |
| AATTCTGTTCGAATGCAATC+CGG | - | chr3.4:75150924-75150943 | None:intergenic | 35.0% | |
| ACAGAAGCAAAACAACATTC+TGG | + | chr3.4:75150843-75150862 | MS.gene074397:intron | 35.0% | |
| ACATAGTTTCATTTCCACCA+AGG | - | chr3.4:75153885-75153904 | None:intergenic | 35.0% | |
| ACATTTGCTTGGAAATCTTC+CGG | - | chr3.4:75154180-75154199 | None:intergenic | 35.0% | |
| ACTTGCAGGAACTAAAAAGT+AGG | - | chr3.4:75152206-75152225 | None:intergenic | 35.0% | |
| AGAACCAAAAGTAATGCAGA+TGG | - | chr3.4:75152653-75152672 | None:intergenic | 35.0% | |
| AGATACACATGCTAAGATAG+AGG | - | chr3.4:75151918-75151937 | None:intergenic | 35.0% | |
| AGGTTATTACGATGCATTCA+AGG | + | chr3.4:75154143-75154162 | MS.gene074397:CDS | 35.0% | |
| ATGCTACAAGGAGAGAAAAT+TGG | + | chr3.4:75152701-75152720 | MS.gene074397:CDS | 35.0% | |
| ATTCAAGGATCAATTAGACC+CGG | + | chr3.4:75154158-75154177 | MS.gene074397:CDS | 35.0% | |
| ATTTCCAAGCAAATGTACAG+AGG | + | chr3.4:75154184-75154203 | MS.gene074397:CDS | 35.0% | |
| CAATGAATATGTAGGTGGAT+AGG | + | chr3.4:75152503-75152522 | MS.gene074397:intron | 35.0% | |
| CACAGACCAAAGAAAAAACA+AGG | + | chr3.4:75151494-75151513 | MS.gene074397:intron | 35.0% | |
| CAGAAGCAAAACAACATTCT+GGG | + | chr3.4:75150844-75150863 | MS.gene074397:intron | 35.0% | |
| CCAAATTTGGACAAGATTTG+TGG | + | chr3.4:75151050-75151069 | MS.gene074397:intron | 35.0% | |
| CCACAAATCTTGTCCAAATT+TGG | - | chr3.4:75151053-75151072 | None:intergenic | 35.0% | |
| CCGGAAAATCTATGAAATTC+CGG | - | chr3.4:75151227-75151246 | None:intergenic | 35.0% | |
| CTTAAAAACTTGAACCTGGT+TGG | - | chr3.4:75151386-75151405 | None:intergenic | 35.0% | |
| GAACCAAAAGTAATGCAGAT+GGG | - | chr3.4:75152652-75152671 | None:intergenic | 35.0% | |
| GATTGTTCTTTATGGTCTGT+TGG | - | chr3.4:75154669-75154688 | None:intergenic | 35.0% | |
| GCAGAAAATGTAAGTTCCAA+AGG | - | chr3.4:75153022-75153041 | None:intergenic | 35.0% | |
| GGCAATTTATTTGTCCAACT+TGG | + | chr3.4:75152064-75152083 | MS.gene074397:intron | 35.0% | |
| GGTATAGGTATACACAAAGA+TGG | + | chr3.4:75154412-75154431 | MS.gene074397:CDS | 35.0% | |
| GTGTAATGCATATAACAGCA+TGG | - | chr3.4:75153861-75153880 | None:intergenic | 35.0% | |
| GTTATATGCATTACACACCT+TGG | + | chr3.4:75153865-75153884 | MS.gene074397:intron | 35.0% | |
| GTTGGAACATTATGAGAAGA+GGG | + | chr3.4:75154434-75154453 | MS.gene074397:CDS | 35.0% | |
| TAAGTTCCAAAGGGTCTATA+AGG | - | chr3.4:75153012-75153031 | None:intergenic | 35.0% | |
| TAGGTATACACAAAGATGGT+TGG | + | chr3.4:75154416-75154435 | MS.gene074397:CDS | 35.0% | |
| TCATCACAAAATGGAAGAAG+TGG | - | chr3.4:75152732-75152751 | None:intergenic | 35.0% | |
| TGATGTTAAGGAAAAGGTTG+AGG | + | chr3.4:75154533-75154552 | MS.gene074397:CDS | 35.0% | |
| TGCTACAAGGAGAGAAAATT+GGG | + | chr3.4:75152702-75152721 | MS.gene074397:CDS | 35.0% | |
| TTGTACGGTCTCCATTTAAT+TGG | + | chr3.4:75151352-75151371 | MS.gene074397:intron | 35.0% | |
| TTTATATGGCTAAAGGAGGA+AGG | + | chr3.4:75154382-75154401 | MS.gene074397:CDS | 35.0% | |
| ! | AACATAGCCTTAAATGACCT+TGG | + | chr3.4:75153285-75153304 | MS.gene074397:CDS | 35.0% |
| ! | ACAAAGGAAGATTTTCCAGT+TGG | - | chr3.4:75153227-75153246 | None:intergenic | 35.0% |
| ! | ATTCTACGTTTGTTAAGTGG+TGG | + | chr3.4:75154634-75154653 | MS.gene074397:CDS | 35.0% |
| ! | ATTTGTTGGGAGTGAAAAGT+GGG | + | chr3.4:75152287-75152306 | MS.gene074397:intron | 35.0% |
| ! | CATACTTTTGGTCCTTAAAG+AGG | - | chr3.4:75152252-75152271 | None:intergenic | 35.0% |
| ! | CCGGAATTTCATAGATTTTC+CGG | + | chr3.4:75151224-75151243 | MS.gene074397:intron | 35.0% |
| ! | CTACTCTGGAAAACAAAATC+CGG | + | chr3.4:75150902-75150921 | MS.gene074397:intron | 35.0% |
| ! | CTGAAGGATTCTTTTCTAGA+AGG | - | chr3.4:75151677-75151696 | None:intergenic | 35.0% |
| ! | TACATTTTCTGCACTACAAG+TGG | + | chr3.4:75153030-75153049 | MS.gene074397:CDS | 35.0% |
| ! | TGGAGTTGGAAAGTTTTCTA+AGG | - | chr3.4:75152608-75152627 | None:intergenic | 35.0% |
| ! | TGGATTCTACGTTTGTTAAG+TGG | + | chr3.4:75154631-75154650 | MS.gene074397:CDS | 35.0% |
| ! | TTTTGGTCGAAAGAAGATAG+AGG | - | chr3.4:75152787-75152806 | None:intergenic | 35.0% |
| !! | AATTTGTTGGGAGTGAAAAG+TGG | + | chr3.4:75152286-75152305 | MS.gene074397:intron | 35.0% |
| !!! | ACTTTTGGTTCTCCTTTAGT+TGG | + | chr3.4:75152661-75152680 | MS.gene074397:CDS | 35.0% |
| !!! | CAAGCCTTTTGATGATGTTA+AGG | + | chr3.4:75154521-75154540 | MS.gene074397:CDS | 35.0% |
| !!! | CTTGTTTTTTCTTTGGTCTG+TGG | - | chr3.4:75151496-75151515 | None:intergenic | 35.0% |
| !!! | GCTCATGAATGATTTGCTTT+TGG | - | chr3.4:75152839-75152858 | None:intergenic | 35.0% |
| AACAACATTCTGGGTTTGTC+CGG | + | chr3.4:75150853-75150872 | MS.gene074397:intron | 40.0% | |
| AAGAAGCAGATAGTGTTTGC+AGG | + | chr3.4:75152538-75152557 | MS.gene074397:CDS | 40.0% | |
| AAGGATAAAGGTTGCATACC+AGG | - | chr3.4:75153311-75153330 | None:intergenic | 40.0% | |
| AAGGGTCTATAAGGACTCAA+AGG | - | chr3.4:75153003-75153022 | None:intergenic | 40.0% | |
| ACATCATCAAAAGGCTTGTC+AGG | - | chr3.4:75154519-75154538 | None:intergenic | 40.0% | |
| ACCTTCCATGATGTTTGTCA+AGG | + | chr3.4:75150995-75151014 | MS.gene074397:intron | 40.0% | |
| ACTTAGAAGGGAACGAAGAT+TGG | + | chr3.4:75154271-75154290 | MS.gene074397:CDS | 40.0% | |
| ATATGCATTACACACCTTGG+TGG | + | chr3.4:75153868-75153887 | MS.gene074397:intron | 40.0% | |
| CAAAAGTAATGCAGATGGGA+GGG | - | chr3.4:75152648-75152667 | None:intergenic | 40.0% | |
| CATCAGGTGCTTTCAAAGAT+TGG | + | chr3.4:75151718-75151737 | MS.gene074397:CDS | 40.0% | |
| CATTATGAGAAGAGGGATGA+AGG | + | chr3.4:75154441-75154460 | MS.gene074397:CDS | 40.0% | |
| CATTTGCTTGGAAATCTTCC+GGG | - | chr3.4:75154179-75154198 | None:intergenic | 40.0% | |
| CCATATAAACACGTCCATCA+CGG | - | chr3.4:75154371-75154390 | None:intergenic | 40.0% | |
| CCTTCCATGATGTTTGTCAA+GGG | + | chr3.4:75150996-75151015 | MS.gene074397:intron | 40.0% | |
| CGTGTTTATATGGCTAAAGG+AGG | + | chr3.4:75154378-75154397 | MS.gene074397:CDS | 40.0% | |
| GAACTTCCAGAAGACTTAGA+AGG | + | chr3.4:75154258-75154277 | MS.gene074397:CDS | 40.0% | |
| GAAGTAGTATGCTCAGACAA+AGG | - | chr3.4:75153243-75153262 | None:intergenic | 40.0% | |
| GGACGTGTTTATATGGCTAA+AGG | + | chr3.4:75154375-75154394 | MS.gene074397:CDS | 40.0% | |
| GGCTGATAAGGATGTGTTTA+AGG | + | chr3.4:75154596-75154615 | MS.gene074397:CDS | 40.0% | |
| GGTTGGAACATTATGAGAAG+AGG | + | chr3.4:75154433-75154452 | MS.gene074397:CDS | 40.0% | |
| GTCTAATACTCAACGCGTAA+GGG | - | chr3.4:75150763-75150782 | None:intergenic | 40.0% | |
| GTTTGTCAAGGGTTGAAATG+CGG | + | chr3.4:75151007-75151026 | MS.gene074397:intron | 40.0% | |
| TAAGGAAAAGGTTGAGGCAT+TGG | + | chr3.4:75154539-75154558 | MS.gene074397:CDS | 40.0% | |
| TCAACCCTTGACAAACATCA+TGG | - | chr3.4:75151003-75151022 | None:intergenic | 40.0% | |
| TCCGGAATATATAATCCGGA+GGG | + | chr3.4:75151242-75151261 | MS.gene074397:intron | 40.0% | |
| TCTCCATTTAATTGGCCAAC+TGG | + | chr3.4:75151360-75151379 | MS.gene074397:intron | 40.0% | |
| TCTTTGGTCTGTGGAAAGTA+TGG | - | chr3.4:75151487-75151506 | None:intergenic | 40.0% | |
| TGAGAAAGATGAGGCTGATA+AGG | + | chr3.4:75154584-75154603 | MS.gene074397:CDS | 40.0% | |
| TGGACAAGATTTGTGGTGTT+CGG | + | chr3.4:75151057-75151076 | MS.gene074397:intron | 40.0% | |
| TGGTAACAATGAAGCTGCTA+AGG | + | chr3.4:75151806-75151825 | MS.gene074397:CDS | 40.0% | |
| TGTTGTGTACTTAGACCAAC+TGG | + | chr3.4:75153209-75153228 | MS.gene074397:CDS | 40.0% | |
| TTCCGGAATATATAATCCGG+AGG | + | chr3.4:75151241-75151260 | MS.gene074397:intron | 40.0% | |
| TTGAGTCCTTATAGACCCTT+TGG | + | chr3.4:75153003-75153022 | MS.gene074397:CDS | 40.0% | |
| TTGTCTGAGCATACTACTTC+AGG | + | chr3.4:75153243-75153262 | MS.gene074397:CDS | 40.0% | |
| TTTGTCCGGATTTCGTAATC+CGG | + | chr3.4:75150867-75150886 | MS.gene074397:intron | 40.0% | |
| ! | AATGTTGTCGCAGGCTTTTA+AGG | - | chr3.4:75153158-75153177 | None:intergenic | 40.0% |
| ! | ATCATGTTTATGGGCTGAAG+TGG | + | chr3.4:75154476-75154495 | MS.gene074397:CDS | 40.0% |
| ! | ATGTTGTCGCAGGCTTTTAA+GGG | - | chr3.4:75153157-75153176 | None:intergenic | 40.0% |
| ! | CATGCAACTTTGTAACTTGC+AGG | - | chr3.4:75152220-75152239 | None:intergenic | 40.0% |
| ! | TAGAAGACTAGTTGAGCCTT+TGG | + | chr3.4:75154314-75154333 | MS.gene074397:CDS | 40.0% |
| !!! | CGGATTTTGTTTTCCAGAGT+AGG | - | chr3.4:75150904-75150923 | None:intergenic | 40.0% |
| AAACCCTGATGCAATTCTGC+AGG | + | chr3.4:75153080-75153099 | MS.gene074397:CDS | 45.0% | |
| AAGAAGATAGAGGAGCTAGG+AGG | - | chr3.4:75152777-75152796 | None:intergenic | 45.0% | |
| ACACACATGGCTTCATCAAG+AGG | + | chr3.4:75151561-75151580 | MS.gene074397:CDS | 45.0% | |
| AGACATTCAAGGAACCGTGA+TGG | + | chr3.4:75154354-75154373 | MS.gene074397:CDS | 45.0% | |
| AGAGAGAGAGAGAGAGAGAA+TGG | + | chr3.4:75151125-75151144 | MS.gene074397:intron | 45.0% | |
| AGAGTAGGTTGTTGCTCATC+CGG | - | chr3.4:75150889-75150908 | None:intergenic | 45.0% | |
| ATCATCAGCTTTCCAGCATC+AGG | + | chr3.4:75151702-75151721 | MS.gene074397:CDS | 45.0% | |
| ATGACCTGCAGAATTGCATC+AGG | - | chr3.4:75153087-75153106 | None:intergenic | 45.0% | |
| CAAATTACCAACATGCCCTC+CGG | - | chr3.4:75151260-75151279 | None:intergenic | 45.0% | |
| CAAGTGGCATGAGAAAGATG+AGG | + | chr3.4:75154575-75154594 | MS.gene074397:CDS | 45.0% | |
| CCAAAAGTAATGCAGATGGG+AGG | - | chr3.4:75152649-75152668 | None:intergenic | 45.0% | |
| CCAGTTCAAAATGTTGTCGC+AGG | - | chr3.4:75153167-75153186 | None:intergenic | 45.0% | |
| CCCTTGACAAACATCATGGA+AGG | - | chr3.4:75150999-75151018 | None:intergenic | 45.0% | |
| CGAAAGAAGATAGAGGAGCT+AGG | - | chr3.4:75152780-75152799 | None:intergenic | 45.0% | |
| CGTCTAATACTCAACGCGTA+AGG | - | chr3.4:75150764-75150783 | None:intergenic | 45.0% | |
| CTAAAGGAGGAAGGCCAAAA+AGG | + | chr3.4:75154391-75154410 | MS.gene074397:CDS | 45.0% | |
| CTAGCCTCTGTACATTTGCT+TGG | - | chr3.4:75154191-75154210 | None:intergenic | 45.0% | |
| CTCATCCGGATTACGAAATC+CGG | - | chr3.4:75150875-75150894 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGAGAGAAT+GGG | + | chr3.4:75151126-75151145 | MS.gene074397:intron | 45.0% | |
| GCCCTCCGGATTATATATTC+CGG | - | chr3.4:75151246-75151265 | None:intergenic | 45.0% | |
| GGCTATTCTGGCAACACTTT+GGG | + | chr3.4:75152582-75152601 | MS.gene074397:CDS | 45.0% | |
| GGGAGTGAAAAGTGGGTATA+GGG | + | chr3.4:75152294-75152313 | MS.gene074397:intron | 45.0% | |
| GTCATTTGATGCGTCCTTGA+AGG | + | chr3.4:75151626-75151645 | MS.gene074397:CDS | 45.0% | |
| TAATACTCAACGCGTAAGGG+AGG | - | chr3.4:75150760-75150779 | None:intergenic | 45.0% | |
| TACCAGGCCAAGGTCATTTA+AGG | - | chr3.4:75153295-75153314 | None:intergenic | 45.0% | |
| TATGAGAAGAGGGATGAAGG+TGG | + | chr3.4:75154444-75154463 | MS.gene074397:CDS | 45.0% | |
| TCGTTCCCTTCTAAGTCTTC+TGG | - | chr3.4:75154267-75154286 | None:intergenic | 45.0% | |
| TCTAGAAGGTAGTGTCTCTC+TGG | - | chr3.4:75151663-75151682 | None:intergenic | 45.0% | |
| TCTGAGCATACTACTTCAGG+TGG | + | chr3.4:75153246-75153265 | MS.gene074397:CDS | 45.0% | |
| TGACCTGCAGAATTGCATCA+GGG | - | chr3.4:75153086-75153105 | None:intergenic | 45.0% | |
| TGGACAGTTACAGAGAAACG+CGG | + | chr3.4:75154106-75154125 | MS.gene074397:CDS | 45.0% | |
| TGGCCAGTTGGCCAATTAAA+TGG | - | chr3.4:75151366-75151385 | None:intergenic | 45.0% | |
| TGGCTATTCTGGCAACACTT+TGG | + | chr3.4:75152581-75152600 | MS.gene074397:CDS | 45.0% | |
| TGGGAGTGAAAAGTGGGTAT+AGG | + | chr3.4:75152293-75152312 | MS.gene074397:intron | 45.0% | |
| TGGTTTCTTGTGAGCCTTCA+AGG | - | chr3.4:75151643-75151662 | None:intergenic | 45.0% | |
| TTCATGAGCGAATCGAGTCT+TGG | + | chr3.4:75152850-75152869 | MS.gene074397:CDS | 45.0% | |
| TTTCATCCTATCCTCCACAG+CGG | - | chr3.4:75154082-75154101 | None:intergenic | 45.0% | |
| ! | ACATGCTGCTTGTAGGCTAA+TGG | + | chr3.4:75152936-75152955 | MS.gene074397:CDS | 45.0% |
| ! | ATATAATCCGGAGGGCATGT+TGG | + | chr3.4:75151250-75151269 | MS.gene074397:intron | 45.0% |
| ! | ATGTTTATGGGCTGAAGTGG+AGG | + | chr3.4:75154479-75154498 | MS.gene074397:CDS | 45.0% |
| ! | CATGCTGCTTGTAGGCTAAT+GGG | + | chr3.4:75152937-75152956 | MS.gene074397:CDS | 45.0% |
| ! | CCTCCCATCTGCATTACTTT+TGG | + | chr3.4:75152646-75152665 | MS.gene074397:CDS | 45.0% |
| ! | CCTGCGACAACATTTTGAAC+TGG | + | chr3.4:75153164-75153183 | MS.gene074397:CDS | 45.0% |
| ! | GAGGAAGGCCAAAAAGGTAT+AGG | + | chr3.4:75154397-75154416 | MS.gene074397:CDS | 45.0% |
| ! | GCTAGAACTTGCAGGAGTAT+GGG | + | chr3.4:75154206-75154225 | MS.gene074397:CDS | 45.0% |
| ! | GGGATACGATCGGAAGATTT+TGG | - | chr3.4:75152628-75152647 | None:intergenic | 45.0% |
| ! | TCACAAGACATGCTGCTTGT+AGG | + | chr3.4:75152929-75152948 | MS.gene074397:CDS | 45.0% |
| ! | TGTTGTCGCAGGCTTTTAAG+GGG | - | chr3.4:75153156-75153175 | None:intergenic | 45.0% |
| !! | AAGCTCTGAAGAAGAAGCTG+AGG | + | chr3.4:75153125-75153144 | MS.gene074397:CDS | 45.0% |
| !! | CCGTGATGGACGTGTTTATA+TGG | + | chr3.4:75154368-75154387 | MS.gene074397:CDS | 45.0% |
| !! | TCTTTGAAAGCACCTGATGC+TGG | - | chr3.4:75151717-75151736 | None:intergenic | 45.0% |
| !!! | CGATCGGAAGATTTTGGAGT+TGG | - | chr3.4:75152622-75152641 | None:intergenic | 45.0% |
| AAAGGTTGCATACCAGGCCA+AGG | - | chr3.4:75153305-75153324 | None:intergenic | 50.0% | |
| AACGCACACACACACACACA+TGG | + | chr3.4:75151548-75151567 | MS.gene074397:CDS | 50.0% | |
| ACAAAAGATAGCCGCTGTGG+AGG | + | chr3.4:75154068-75154087 | MS.gene074397:CDS | 50.0% | |
| ACAGTATATGCCCATGGAGG+AGG | - | chr3.4:75150604-75150623 | None:intergenic | 50.0% | |
| ACGCGGGGACATCAGAAAAA+AGG | + | chr3.4:75154123-75154142 | MS.gene074397:CDS | 50.0% | |
| AGAGGAGCTAGGAGGATTCT+TGG | - | chr3.4:75152769-75152788 | None:intergenic | 50.0% | |
| AGCCTTAAATGACCTTGGCC+TGG | + | chr3.4:75153290-75153309 | MS.gene074397:CDS | 50.0% | |
| AGTGTTGCCAGAATAGCCAC+TGG | - | chr3.4:75152580-75152599 | None:intergenic | 50.0% | |
| CACATGGCTTCATCAAGAGG+TGG | + | chr3.4:75151564-75151583 | MS.gene074397:CDS | 50.0% | |
| CAGCTGCAGCATTAGAGGAA+CGG | + | chr3.4:75154019-75154038 | MS.gene074397:CDS | 50.0% | |
| GACAGTTACAGAGAAACGCG+GGG | + | chr3.4:75154108-75154127 | MS.gene074397:CDS | 50.0% | |
| GCAACAGTATATGCCCATGG+AGG | - | chr3.4:75150607-75150626 | None:intergenic | 50.0% | |
| GCAGCAACAGTATATGCCCA+TGG | - | chr3.4:75150610-75150629 | None:intergenic | 50.0% | |
| GCTACAAAAGATAGCCGCTG+TGG | + | chr3.4:75154065-75154084 | MS.gene074397:CDS | 50.0% | |
| GGACAGTTACAGAGAAACGC+GGG | + | chr3.4:75154107-75154126 | MS.gene074397:CDS | 50.0% | |
| GGATGAGCAACAACCTACTC+TGG | + | chr3.4:75150888-75150907 | MS.gene074397:intron | 50.0% | |
| GGCATATACTGTTGCTGCTC+CGG | + | chr3.4:75150612-75150631 | MS.gene074397:CDS | 50.0% | |
| GGCTAGAACTTGCAGGAGTA+TGG | + | chr3.4:75154205-75154224 | MS.gene074397:CDS | 50.0% | |
| GTACAGAGGCTAGAACTTGC+AGG | + | chr3.4:75154198-75154217 | MS.gene074397:CDS | 50.0% | |
| TCAAGCAGCTGCAGCATTAG+AGG | + | chr3.4:75154014-75154033 | MS.gene074397:CDS | 50.0% | |
| TGCACTACAAGTGGCGATGA+AGG | + | chr3.4:75153039-75153058 | MS.gene074397:CDS | 50.0% | |
| ! | GGAGGATAGGATGAAAGCAC+TGG | + | chr3.4:75154086-75154105 | MS.gene074397:CDS | 50.0% |
| ! | TAATTTGCATAGAGCGCGCG+AGG | + | chr3.4:75151273-75151292 | MS.gene074397:intron | 50.0% |
| !! | GGAAAAGGTTGAGGCATTGG+AGG | + | chr3.4:75154542-75154561 | MS.gene074397:CDS | 50.0% |
| AATTGGCCAACTGGCCAACC+AGG | + | chr3.4:75151369-75151388 | MS.gene074397:intron | 55.0% | |
| AGATAGCCGCTGTGGAGGAT+AGG | + | chr3.4:75154073-75154092 | MS.gene074397:CDS | 55.0% | |
| AGCGCATAGGGAACAGATGG+AGG | - | chr3.4:75150715-75150734 | None:intergenic | 55.0% | |
| AGGGAACAGATGGAGGCTGA+AGG | - | chr3.4:75150708-75150727 | None:intergenic | 55.0% | |
| ATCAGTCTGCTCCTCCTCCA+TGG | + | chr3.4:75150590-75150609 | MS.gene074397:CDS | 55.0% | |
| CATCAGGCTCGACATCAGCA+CGG | + | chr3.4:75150646-75150665 | MS.gene074397:CDS | 55.0% | |
| GCAGATGGGAGGGATACGAT+CGG | - | chr3.4:75152638-75152657 | None:intergenic | 55.0% | |
| GTGTTTGCAGGACACTCGTC+TGG | + | chr3.4:75152550-75152569 | MS.gene074397:CDS | 55.0% | |
| GTTCCCTATGCGCTCTCCTA+CGG | + | chr3.4:75150721-75150740 | MS.gene074397:CDS | 55.0% | |
| TCAGTCTGCTCCTCCTCCAT+GGG | + | chr3.4:75150591-75150610 | MS.gene074397:CDS | 55.0% | |
| TGATGTCGAGCCTGATGTCG+AGG | - | chr3.4:75150643-75150662 | None:intergenic | 55.0% | |
| TGGTGGTCCAGTGGCTATTC+TGG | + | chr3.4:75152570-75152589 | MS.gene074397:CDS | 55.0% | |
| TTCCCTATGCGCTCTCCTAC+GGG | + | chr3.4:75150722-75150741 | MS.gene074397:CDS | 55.0% | |
| TTTGCAGGACACTCGTCTGG+TGG | + | chr3.4:75152553-75152572 | MS.gene074397:CDS | 55.0% | |
| ! | CTTGAACCTGGTTGGCCAGT+TGG | - | chr3.4:75151378-75151397 | None:intergenic | 55.0% |
| ! | GAGAGCGCATAGGGAACAGA+TGG | - | chr3.4:75150718-75150737 | None:intergenic | 55.0% |
| ! | TTCCCGTAGGAGAGCGCATA+GGG | - | chr3.4:75150727-75150746 | None:intergenic | 55.0% |
| !! | CTGAAGGTGTTGTTCCTCCG+AGG | - | chr3.4:75150692-75150711 | None:intergenic | 55.0% |
| ACACTCGTCTGGTGGTCCAG+TGG | + | chr3.4:75152561-75152580 | MS.gene074397:CDS | 60.0% | |
| ACTCAACGCGTAAGGGAGGC+AGG | - | chr3.4:75150756-75150775 | None:intergenic | 60.0% | |
| CTCAACGCGTAAGGGAGGCA+GGG | - | chr3.4:75150755-75150774 | None:intergenic | 60.0% | |
| GCCTGATGTCGAGGATCAGC+CGG | - | chr3.4:75150634-75150653 | None:intergenic | 60.0% | |
| GGAGGAGGAGCAGACTGATG+TGG | - | chr3.4:75150589-75150608 | None:intergenic | 60.0% | |
| TCCGGCTGATCCTCGACATC+AGG | + | chr3.4:75150630-75150649 | MS.gene074397:CDS | 60.0% | |
| TTTGCATAGAGCGCGCGAGG+AGG | + | chr3.4:75151276-75151295 | MS.gene074397:intron | 60.0% | |
| ! | CTTCCCGTAGGAGAGCGCAT+AGG | - | chr3.4:75150728-75150747 | None:intergenic | 60.0% |
| ! | GTGTTGTTCCTCCGAGGCGT+CGG | - | chr3.4:75150686-75150705 | None:intergenic | 60.0% |
| ! | TGTTGTTCCTCCGAGGCGTC+GGG | - | chr3.4:75150685-75150704 | None:intergenic | 60.0% |
| AGAGCGCGCGAGGAGGTCAT+AGG | + | chr3.4:75151283-75151302 | MS.gene074397:intron | 65.0% | |
| AGGCAGGGCATGCTTCCCGT+AGG | - | chr3.4:75150740-75150759 | None:intergenic | 65.0% | |
| GAGCGCGCGAGGAGGTCATA+GGG | + | chr3.4:75151284-75151303 | MS.gene074397:intron | 65.0% | |
| GCGCGAGGAGGTCATAGGGT+GGG | + | chr3.4:75151288-75151307 | MS.gene074397:intron | 65.0% | |
| !! | GTTGTTCCTCCGAGGCGTCG+GGG | - | chr3.4:75150684-75150703 | None:intergenic | 65.0% |
| CCTCTAGCACCCCGACGCCT+CGG | + | chr3.4:75150672-75150691 | MS.gene074397:CDS | 70.0% | |
| CGCGCGAGGAGGTCATAGGG+TGG | + | chr3.4:75151287-75151306 | MS.gene074397:intron | 70.0% | |
| CTAGCACCCCGACGCCTCGG+AGG | + | chr3.4:75150675-75150694 | MS.gene074397:CDS | 75.0% | |
| !! | CCGAGGCGTCGGGGTGCTAG+AGG | - | chr3.4:75150675-75150694 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 75150575 | 75154716 | 75150575 | ID=MS.gene074397 |
| chr3.4 | mRNA | 75150575 | 75154716 | 75150575 | ID=MS.gene074397.t1;Parent=MS.gene074397 |
| chr3.4 | exon | 75150575 | 75150782 | 75150575 | ID=MS.gene074397.t1.exon1;Parent=MS.gene074397.t1 |
| chr3.4 | CDS | 75150575 | 75150782 | 75150575 | ID=cds.MS.gene074397.t1;Parent=MS.gene074397.t1 |
| chr3.4 | exon | 75151499 | 75151890 | 75151499 | ID=MS.gene074397.t1.exon2;Parent=MS.gene074397.t1 |
| chr3.4 | CDS | 75151499 | 75151890 | 75151499 | ID=cds.MS.gene074397.t1;Parent=MS.gene074397.t1 |
| chr3.4 | exon | 75152517 | 75153311 | 75152517 | ID=MS.gene074397.t1.exon3;Parent=MS.gene074397.t1 |
| chr3.4 | CDS | 75152517 | 75153311 | 75152517 | ID=cds.MS.gene074397.t1;Parent=MS.gene074397.t1 |
| chr3.4 | exon | 75153991 | 75154716 | 75153991 | ID=MS.gene074397.t1.exon4;Parent=MS.gene074397.t1 |
| chr3.4 | CDS | 75153991 | 75154716 | 75153991 | ID=cds.MS.gene074397.t1;Parent=MS.gene074397.t1 |
| Gene Sequence |
| Protein sequence |
