Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25909.t1 | XP_013461062.1 | 92.2 | 526 | 33 | 2 | 3 | 524 | 97 | 618 | 1.60E-279 | 971.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25909.t1 | Q9SU72 | 41.2 | 546 | 251 | 12 | 12 | 519 | 100 | 613 | 1.3e-104 | 381.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25909.t1 | A0A072V056 | 92.2 | 526 | 33 | 2 | 3 | 524 | 97 | 618 | 1.2e-279 | 971.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022252 | MS.gene25909 | PPI |
| MS.gene42360 | MS.gene25909 | PPI |
| MS.gene38404 | MS.gene25909 | PPI |
| MS.gene38414 | MS.gene25909 | PPI |
| MS.gene38392 | MS.gene25909 | PPI |
| MS.gene062716 | MS.gene25909 | PPI |
| MS.gene69123 | MS.gene25909 | PPI |
| MS.gene25879 | MS.gene25909 | PPI |
| MS.gene25909 | MS.gene022252 | PPI |
| MS.gene074397 | MS.gene25909 | PPI |
| MS.gene38399 | MS.gene25909 | PPI |
| MS.gene014545 | MS.gene25909 | PPI |
| MS.gene022225 | MS.gene25909 | PPI |
| MS.gene70582 | MS.gene25909 | PPI |
| MS.gene27345 | MS.gene25909 | PPI |
| MS.gene38408 | MS.gene25909 | PPI |
| MS.gene044112 | MS.gene25909 | PPI |
| MS.gene25909 | MS.gene26931 | PPI |
| MS.gene24315 | MS.gene25909 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25909.t1 | MTR_3g078633 | 92.205 | 526 | 33 | 2 | 3 | 524 | 97 | 618 | 0.0 | 1008 |
| MS.gene25909.t1 | MTR_3g078633 | 92.039 | 515 | 33 | 2 | 14 | 524 | 36 | 546 | 0.0 | 983 |
| MS.gene25909.t1 | MTR_3g079340 | 52.453 | 530 | 229 | 10 | 5 | 524 | 100 | 616 | 0.0 | 528 |
| MS.gene25909.t1 | MTR_8g494200 | 26.336 | 524 | 298 | 19 | 27 | 508 | 130 | 607 | 6.86e-47 | 173 |
| MS.gene25909.t1 | MTR_3g081450 | 76.238 | 101 | 20 | 1 | 409 | 509 | 32 | 128 | 3.77e-46 | 160 |
| MS.gene25909.t1 | MTR_0095s0020 | 26.686 | 341 | 186 | 14 | 27 | 344 | 155 | 454 | 1.38e-25 | 111 |
| MS.gene25909.t1 | MTR_3g467360 | 26.966 | 356 | 203 | 17 | 182 | 505 | 209 | 539 | 2.91e-21 | 97.8 |
| MS.gene25909.t1 | MTR_3g467360 | 26.966 | 356 | 203 | 17 | 182 | 505 | 215 | 545 | 3.30e-21 | 97.4 |
| MS.gene25909.t1 | MTR_6g007985 | 24.576 | 354 | 217 | 13 | 181 | 505 | 133 | 465 | 2.73e-19 | 91.3 |
| MS.gene25909.t1 | MTR_6g008015 | 24.576 | 354 | 217 | 13 | 181 | 505 | 210 | 542 | 3.88e-19 | 91.3 |
| MS.gene25909.t1 | MTR_6g008055 | 24.251 | 367 | 195 | 15 | 184 | 506 | 213 | 540 | 3.67e-15 | 78.6 |
| MS.gene25909.t1 | MTR_6g007975 | 24.863 | 366 | 202 | 17 | 181 | 506 | 210 | 542 | 4.75e-15 | 78.2 |
| MS.gene25909.t1 | MTR_6g007980 | 22.817 | 355 | 223 | 13 | 182 | 507 | 209 | 541 | 9.43e-14 | 74.3 |
| MS.gene25909.t1 | MTR_6g007980 | 23.034 | 356 | 222 | 13 | 182 | 507 | 209 | 542 | 9.53e-14 | 74.3 |
| MS.gene25909.t1 | MTR_6g007980 | 22.969 | 357 | 222 | 13 | 182 | 507 | 209 | 543 | 9.97e-14 | 74.3 |
| MS.gene25909.t1 | MTR_8g011610 | 41.379 | 87 | 48 | 1 | 22 | 105 | 225 | 311 | 4.26e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25909.t1 | AT3G48090 | 41.209 | 546 | 251 | 12 | 12 | 519 | 100 | 613 | 1.70e-130 | 393 |
| MS.gene25909.t1 | AT3G48090 | 41.604 | 536 | 243 | 12 | 22 | 519 | 2 | 505 | 3.81e-130 | 389 |
| MS.gene25909.t1 | AT3G48080 | 38.776 | 539 | 272 | 13 | 9 | 513 | 97 | 611 | 1.42e-120 | 368 |
| MS.gene25909.t1 | AT3G52430 | 25.356 | 351 | 205 | 13 | 174 | 490 | 175 | 502 | 1.50e-23 | 104 |
| MS.gene25909.t1 | AT3G52430 | 44.000 | 75 | 38 | 2 | 29 | 103 | 112 | 182 | 5.30e-11 | 65.5 |
| MS.gene25909.t1 | AT5G14930 | 28.319 | 226 | 127 | 9 | 308 | 507 | 293 | 509 | 2.54e-14 | 75.9 |
Find 109 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAGATTCAAAGATATTT+TGG | 0.139370 | 3.2:+69377821 | MS.gene25909:intron |
| GTTACTCAGAATCATGTTTA+TGG | 0.160363 | 3.2:+69380442 | MS.gene25909:CDS |
| TAATGCATGATTGTTCTTTA+TGG | 0.162207 | 3.2:-69380650 | None:intergenic |
| GGGATACGATCGGAAGATTT+TGG | 0.194261 | 3.2:-69378601 | None:intergenic |
| CCTCCCATCTGCATTACTTT+TGG | 0.239470 | 3.2:+69378622 | MS.gene25909:CDS |
| GGCTATTCTGGCAACACTTT+GGG | 0.244937 | 3.2:+69378558 | MS.gene25909:CDS |
| GTCATTTAAGGCTATGTTAA+TGG | 0.251285 | 3.2:-69379256 | None:intergenic |
| GCTCATGAATGATTTGCTTT+TGG | 0.251739 | 3.2:-69378812 | None:intergenic |
| ATGCTACAAGGAGAGAAAAT+TGG | 0.262993 | 3.2:+69378677 | MS.gene25909:CDS |
| GGCTAGAACTTGCAGGAGTA+TGG | 0.273354 | 3.2:+69380181 | MS.gene25909:CDS |
| TACCAGGCCAAGGTCATTTA+AGG | 0.278195 | 3.2:-69379268 | None:intergenic |
| TCGTTCCCTTCTAAGTCTTC+TGG | 0.280228 | 3.2:-69380240 | None:intergenic |
| TGGTGGTCCAGTGGCTATTC+TGG | 0.280884 | 3.2:+69378546 | MS.gene25909:CDS |
| CCGTGATGGACGTGTTTATA+TGG | 0.287982 | 3.2:+69380344 | MS.gene25909:CDS |
| GGCTGATAAGGATGTGTTTA+AGG | 0.289164 | 3.2:+69380572 | MS.gene25909:CDS |
| ACATTTGCTTGGAAATCTTC+CGG | 0.306152 | 3.2:-69380153 | None:intergenic |
| TTGTCTGAGCATACTACTTC+AGG | 0.335540 | 3.2:+69379219 | MS.gene25909:CDS |
| TGTCATATCTCATCACAAAA+TGG | 0.352184 | 3.2:-69378714 | None:intergenic |
| GAACTTCCAGAAGACTTAGA+AGG | 0.361685 | 3.2:+69380234 | MS.gene25909:CDS |
| ACTTAGAAGGGAACGAAGAT+TGG | 0.364202 | 3.2:+69380247 | MS.gene25909:CDS |
| TTACTCAGAATCATGTTTAT+GGG | 0.367047 | 3.2:+69380443 | MS.gene25909:CDS |
| ACATGCTGCTTGTAGGCTAA+TGG | 0.368160 | 3.2:+69378912 | MS.gene25909:CDS |
| CATTTGCTTGGAAATCTTCC+GGG | 0.374664 | 3.2:-69380152 | None:intergenic |
| TAAGTTCCAAAGGGTCTATA+AGG | 0.375128 | 3.2:-69378985 | None:intergenic |
| TTGAGTCCTTATAGACCCTT+TGG | 0.379079 | 3.2:+69378979 | MS.gene25909:CDS |
| AGAGGAGCTAGGAGGATTCT+TGG | 0.379820 | 3.2:-69378742 | None:intergenic |
| TAGAAGACTAGTTGAGCCTT+TGG | 0.383000 | 3.2:+69380290 | MS.gene25909:CDS |
| TCACAAGACATGCTGCTTGT+AGG | 0.383836 | 3.2:+69378905 | MS.gene25909:CDS |
| TCAAGCAGCTGCAGCATTAG+AGG | 0.386121 | 3.2:+69379990 | MS.gene25909:CDS |
| CTAAAGGAGGAAGGCCAAAA+AGG | 0.396329 | 3.2:+69380367 | MS.gene25909:CDS |
| CATGCTGCTTGTAGGCTAAT+GGG | 0.400385 | 3.2:+69378913 | MS.gene25909:CDS |
| TGGCTATTCTGGCAACACTT+TGG | 0.417209 | 3.2:+69378557 | MS.gene25909:CDS |
| TGCTACAAGGAGAGAAAATT+GGG | 0.419960 | 3.2:+69378678 | MS.gene25909:CDS |
| ACATCATCAAAAGGCTTGTC+AGG | 0.423403 | 3.2:-69380492 | None:intergenic |
| AACGAAGATTGGATTAAGAT+AGG | 0.426436 | 3.2:+69380258 | MS.gene25909:CDS |
| GTACAGAGGCTAGAACTTGC+AGG | 0.431181 | 3.2:+69380174 | MS.gene25909:CDS |
| CTAGCCTCTGTACATTTGCT+TGG | 0.431295 | 3.2:-69380164 | None:intergenic |
| TGTTGTGTACTTAGACCAAC+TGG | 0.432263 | 3.2:+69379185 | MS.gene25909:CDS |
| TGAGAAAGATGAGGCTGATA+AGG | 0.438651 | 3.2:+69380560 | MS.gene25909:CDS |
| CTAATTACTATAGACATTCA+AGG | 0.443986 | 3.2:+69380319 | MS.gene25909:CDS |
| TAAGGAAAAGGTTGAGGCAT+TGG | 0.451260 | 3.2:+69380515 | MS.gene25909:CDS |
| AAGAAGCAGATAGTGTTTGC+AGG | 0.453653 | 3.2:+69378514 | MS.gene25909:CDS |
| ATGACCTGCAGAATTGCATC+AGG | 0.455008 | 3.2:-69379060 | None:intergenic |
| GATTGTTCTTTATGGTCTGT+TGG | 0.470082 | 3.2:-69380642 | None:intergenic |
| CAATGAATATGTAGGTGGAT+AGG | 0.474650 | 3.2:+69378479 | MS.gene25909:intron |
| GGAAAAGGTTGAGGCATTGG+AGG | 0.475367 | 3.2:+69380518 | MS.gene25909:CDS |
| AATGAATATGTAGGTGGATA+GGG | 0.479173 | 3.2:+69378480 | MS.gene25909:intron |
| CATTATGAGAAGAGGGATGA+AGG | 0.484238 | 3.2:+69380417 | MS.gene25909:CDS |
| AGGTTATTACGATGCATTCA+AGG | 0.484769 | 3.2:+69380119 | MS.gene25909:CDS |
| AATATGTGATTTCCAACTAA+AGG | 0.485127 | 3.2:-69378649 | None:intergenic |
| TGGATTCTACGTTTGTTAAG+TGG | 0.487040 | 3.2:+69380607 | MS.gene25909:CDS |
| AACATAGCCTTAAATGACCT+TGG | 0.489141 | 3.2:+69379261 | MS.gene25909:CDS |
| TGCACTACAAGTGGCGATGA+AGG | 0.491111 | 3.2:+69379015 | MS.gene25909:CDS |
| GTGTTTGCAGGACACTCGTC+TGG | 0.495509 | 3.2:+69378526 | MS.gene25909:CDS |
| GCAGAAAATGTAAGTTCCAA+AGG | 0.507553 | 3.2:-69378995 | None:intergenic |
| GTTGGAACATTATGAGAAGA+GGG | 0.510509 | 3.2:+69380410 | MS.gene25909:CDS |
| TTCATGAGCGAATCGAGTCT+TGG | 0.516950 | 3.2:+69378826 | MS.gene25909:CDS |
| GAAGTAGTATGCTCAGACAA+AGG | 0.517071 | 3.2:-69379216 | None:intergenic |
| CCAGTTCAAAATGTTGTCGC+AGG | 0.517117 | 3.2:-69379140 | None:intergenic |
| AGATAGCCGCTGTGGAGGAT+AGG | 0.526622 | 3.2:+69380049 | MS.gene25909:CDS |
| TGGTAACAATGAAGCTGCTA+AGG | 0.528491 | 3.2:+69377782 | None:intergenic |
| TGATGTTAAGGAAAAGGTTG+AGG | 0.529296 | 3.2:+69380509 | MS.gene25909:CDS |
| GCTAGAACTTGCAGGAGTAT+GGG | 0.533503 | 3.2:+69380182 | MS.gene25909:CDS |
| AAACCCTGATGCAATTCTGC+AGG | 0.542505 | 3.2:+69379056 | MS.gene25909:CDS |
| ATTCTACGTTTGTTAAGTGG+TGG | 0.545586 | 3.2:+69380610 | MS.gene25909:CDS |
| GGACGTGTTTATATGGCTAA+AGG | 0.547868 | 3.2:+69380351 | MS.gene25909:CDS |
| AGCCTTAAATGACCTTGGCC+TGG | 0.548198 | 3.2:+69379266 | MS.gene25909:CDS |
| TAGGTATACACAAAGATGGT+TGG | 0.548252 | 3.2:+69380392 | MS.gene25909:CDS |
| GGAGGATAGGATGAAAGCAC+TGG | 0.548822 | 3.2:+69380062 | MS.gene25909:CDS |
| TCATCACAAAATGGAAGAAG+TGG | 0.551943 | 3.2:-69378705 | None:intergenic |
| CAGAAAATGTAAGTTCCAAA+GGG | 0.551969 | 3.2:-69378994 | None:intergenic |
| CGAAAGAAGATAGAGGAGCT+AGG | 0.552232 | 3.2:-69378753 | None:intergenic |
| ATCATGTTTATGGGCTGAAG+TGG | 0.554848 | 3.2:+69380452 | MS.gene25909:CDS |
| AACTTCCAGAAGACTTAGAA+GGG | 0.561390 | 3.2:+69380235 | MS.gene25909:CDS |
| GGTATAGGTATACACAAAGA+TGG | 0.561423 | 3.2:+69380388 | MS.gene25909:CDS |
| AAGCTCTGAAGAAGAAGCTG+AGG | 0.562108 | 3.2:+69379101 | MS.gene25909:CDS |
| GGTTGGAACATTATGAGAAG+AGG | 0.569597 | 3.2:+69380409 | MS.gene25909:CDS |
| ATGTTTATGGGCTGAAGTGG+AGG | 0.574694 | 3.2:+69380455 | MS.gene25909:CDS |
| CAAAAGTAATGCAGATGGGA+GGG | 0.576141 | 3.2:-69378621 | None:intergenic |
| AGAACCAAAAGTAATGCAGA+TGG | 0.587556 | 3.2:-69378626 | None:intergenic |
| TGGAGGAATTTATAAGCAAG+TGG | 0.588253 | 3.2:+69380535 | MS.gene25909:CDS |
| AAGGGTCTATAAGGACTCAA+AGG | 0.589494 | 3.2:-69378976 | None:intergenic |
| AAAGTCATCACTTGAAGATG+AGG | 0.590426 | 3.2:+69377845 | MS.gene25909:CDS |
| ACAAAAGATAGCCGCTGTGG+AGG | 0.604033 | 3.2:+69380044 | MS.gene25909:CDS |
| CAGCTGCAGCATTAGAGGAA+CGG | 0.605468 | 3.2:+69379995 | MS.gene25909:CDS |
| AAAGGTTGCATACCAGGCCA+AGG | 0.614366 | 3.2:-69379278 | None:intergenic |
| AGTGTTGCCAGAATAGCCAC+TGG | 0.614618 | 3.2:-69378553 | None:intergenic |
| GGACAGTTACAGAGAAACGC+GGG | 0.617330 | 3.2:+69380083 | MS.gene25909:CDS |
| CGTGTTTATATGGCTAAAGG+AGG | 0.625592 | 3.2:+69380354 | MS.gene25909:CDS |
| TTTATATGGCTAAAGGAGGA+AGG | 0.625809 | 3.2:+69380358 | MS.gene25909:CDS |
| CCAAAAGTAATGCAGATGGG+AGG | 0.626384 | 3.2:-69378622 | None:intergenic |
| CCATATAAACACGTCCATCA+CGG | 0.630887 | 3.2:-69380344 | None:intergenic |
| TATGAGAAGAGGGATGAAGG+TGG | 0.634440 | 3.2:+69380420 | MS.gene25909:CDS |
| TTTGCAGGACACTCGTCTGG+TGG | 0.640829 | 3.2:+69378529 | MS.gene25909:CDS |
| ACACTCGTCTGGTGGTCCAG+TGG | 0.641162 | 3.2:+69378537 | MS.gene25909:CDS |
| AGACATTCAAGGAACCGTGA+TGG | 0.644212 | 3.2:+69380330 | MS.gene25909:CDS |
| GAACCAAAAGTAATGCAGAT+GGG | 0.645149 | 3.2:-69378625 | None:intergenic |
| TCTGAGCATACTACTTCAGG+TGG | 0.659119 | 3.2:+69379222 | MS.gene25909:CDS |
| GCAGATGGGAGGGATACGAT+CGG | 0.665165 | 3.2:-69378611 | None:intergenic |
| TAGTAATTAGCAATATCCAA+AGG | 0.665329 | 3.2:-69380306 | None:intergenic |
| TGACCTGCAGAATTGCATCA+GGG | 0.674595 | 3.2:-69379059 | None:intergenic |
| GCTACAAAAGATAGCCGCTG+TGG | 0.677260 | 3.2:+69380041 | MS.gene25909:CDS |
| ATTCAAGGATCAATTAGACC+CGG | 0.679489 | 3.2:+69380134 | MS.gene25909:CDS |
| ATTTCCAAGCAAATGTACAG+AGG | 0.698435 | 3.2:+69380160 | MS.gene25909:CDS |
| AAGAAGATAGAGGAGCTAGG+AGG | 0.700489 | 3.2:-69378750 | None:intergenic |
| TGGACAGTTACAGAGAAACG+CGG | 0.726781 | 3.2:+69380082 | MS.gene25909:CDS |
| CAAGTGGCATGAGAAAGATG+AGG | 0.734716 | 3.2:+69380551 | MS.gene25909:CDS |
| GACAGTTACAGAGAAACGCG+GGG | 0.746046 | 3.2:+69380084 | MS.gene25909:CDS |
| TTTCATCCTATCCTCCACAG+CGG | 0.790893 | 3.2:-69380055 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATATTTAATAACTC+AGG | + | chr3.2:69378327-69378346 | MS.gene25909:intron | 15.0% |
| !! | ATATATTTCAATGAATATGT+AGG | + | chr3.2:69378471-69378490 | MS.gene25909:intron | 15.0% |
| !! | ATATGAGTATATAAAGTAAA+AGG | - | chr3.2:69379379-69379398 | None:intergenic | 15.0% |
| !!! | ACAAAATTAATTTTCAACTT+AGG | - | chr3.2:69378093-69378112 | None:intergenic | 15.0% |
| !! | CATAATCAGATATAATTGAA+TGG | + | chr3.2:69379706-69379725 | MS.gene25909:intron | 20.0% |
| !! | GTAGTAATTTATTAGACATA+AGG | - | chr3.2:69379519-69379538 | None:intergenic | 20.0% |
| !! | TTAAGTATAGATGCTATAAA+AGG | - | chr3.2:69377949-69377968 | None:intergenic | 20.0% |
| !!! | AAACTAATATTGAGTTGTTT+TGG | - | chr3.2:69378000-69378019 | None:intergenic | 20.0% |
| !!! | AATGTCATGTATAATTTGTT+GGG | + | chr3.2:69378250-69378269 | MS.gene25909:intron | 20.0% |
| ! | AATATGTGATTTCCAACTAA+AGG | - | chr3.2:69378652-69378671 | None:intergenic | 25.0% |
| ! | AATCAGATATGTCACTAATA+TGG | - | chr3.2:69379423-69379442 | None:intergenic | 25.0% |
| ! | CCAAAATATCTTTGAATCTT+TGG | - | chr3.2:69377824-69377843 | None:intergenic | 25.0% |
| ! | CTAATTACTATAGACATTCA+AGG | + | chr3.2:69380319-69380338 | MS.gene25909:CDS | 25.0% |
| ! | TAATGCATGATTGTTCTTTA+TGG | - | chr3.2:69380653-69380672 | None:intergenic | 25.0% |
| ! | TAGTAATTAGCAATATCCAA+AGG | - | chr3.2:69380309-69380328 | None:intergenic | 25.0% |
| ! | TATTTCAATGAATATGTAGG+TGG | + | chr3.2:69378474-69378493 | MS.gene25909:intron | 25.0% |
| ! | TCTCATGTATTATGTATGAT+AGG | - | chr3.2:69379785-69379804 | None:intergenic | 25.0% |
| ! | TTAACATTAGAGACTCAATT+AGG | + | chr3.2:69378019-69378038 | MS.gene25909:intron | 25.0% |
| ! | TTACTCAGAATCATGTTTAT+GGG | + | chr3.2:69380443-69380462 | MS.gene25909:CDS | 25.0% |
| ! | TTTGAACTGGTAAAAAACTT+TGG | + | chr3.2:69379153-69379172 | MS.gene25909:CDS | 25.0% |
| !! | CAATGTCATGTATAATTTGT+TGG | + | chr3.2:69378249-69378268 | MS.gene25909:intron | 25.0% |
| !! | CCAAAGATTCAAAGATATTT+TGG | + | chr3.2:69377821-69377840 | MS.gene25909:intron | 25.0% |
| !! | TTTTCCTTAACATCATCAAA+AGG | - | chr3.2:69380504-69380523 | None:intergenic | 25.0% |
| !!! | ACTTTAAAATCGCCAAAAAT+AGG | - | chr3.2:69379311-69379330 | None:intergenic | 25.0% |
| !!! | ATCACATGGATTTGTTAAAA+AGG | + | chr3.2:69378415-69378434 | MS.gene25909:intron | 25.0% |
| !!! | CATTTTTAGCATTAAGGATA+GGG | - | chr3.2:69377975-69377994 | None:intergenic | 25.0% |
| !!! | CTTTAAAATCGCCAAAAATA+GGG | - | chr3.2:69379310-69379329 | None:intergenic | 25.0% |
| !!! | TCATTTTTAGCATTAAGGAT+AGG | - | chr3.2:69377976-69377995 | None:intergenic | 25.0% |
| !!! | TGCTATTTTTTCATGTTCAA+TGG | - | chr3.2:69379897-69379916 | None:intergenic | 25.0% |
| !!! | TTGGTTCATTTTTAGCATTA+AGG | - | chr3.2:69377981-69378000 | None:intergenic | 25.0% |
| !!! | TTTTGATGATGTTAAGGAAA+AGG | + | chr3.2:69380503-69380522 | MS.gene25909:CDS | 25.0% |
| AACGAAGATTGGATTAAGAT+AGG | + | chr3.2:69380258-69380277 | MS.gene25909:CDS | 30.0% | |
| AATGAATATGTAGGTGGATA+GGG | + | chr3.2:69378480-69378499 | MS.gene25909:intron | 30.0% | |
| ATTTGATTCATGTACCAAGT+TGG | - | chr3.2:69378057-69378076 | None:intergenic | 30.0% | |
| CAGAAAATGTAAGTTCCAAA+GGG | - | chr3.2:69378997-69379016 | None:intergenic | 30.0% | |
| GTTACTCAGAATCATGTTTA+TGG | + | chr3.2:69380442-69380461 | MS.gene25909:CDS | 30.0% | |
| TGACACTATCAAATATCACA+TGG | + | chr3.2:69378401-69378420 | MS.gene25909:intron | 30.0% | |
| TGTCATATCTCATCACAAAA+TGG | - | chr3.2:69378717-69378736 | None:intergenic | 30.0% | |
| TTTGCATAACTAGATACACA+TGG | - | chr3.2:69377905-69377924 | None:intergenic | 30.0% | |
| ! | ACATATTTTCTCATGCTACA+AGG | + | chr3.2:69378665-69378684 | MS.gene25909:CDS | 30.0% |
| ! | ACATGACATTGACATACTTT+TGG | - | chr3.2:69378240-69378259 | None:intergenic | 30.0% |
| ! | ATACTTTTGGTCCTTAAAGA+GGG | - | chr3.2:69378227-69378246 | None:intergenic | 30.0% |
| ! | GTCATTTAAGGCTATGTTAA+TGG | - | chr3.2:69379259-69379278 | None:intergenic | 30.0% |
| ! | GTGCAACTGTTTCAAATTTT+TGG | - | chr3.2:69378780-69378799 | None:intergenic | 30.0% |
| ! | TGTGTATACCTATACCTTTT+TGG | - | chr3.2:69380384-69380403 | None:intergenic | 30.0% |
| !!! | ATGTTTTTAGTCCCTCTTTA+AGG | + | chr3.2:69378213-69378232 | MS.gene25909:intron | 30.0% |
| !!! | CTCATGAATGATTTGCTTTT+GGG | - | chr3.2:69378814-69378833 | None:intergenic | 30.0% |
| !!! | GTTTAAGGATGTGTTTTTAG+TGG | + | chr3.2:69380587-69380606 | MS.gene25909:CDS | 30.0% |
| AAAATCGCCAAAAATAGGGA+AGG | - | chr3.2:69379306-69379325 | None:intergenic | 35.0% | |
| AAAGTCATCACTTGAAGATG+AGG | + | chr3.2:69377845-69377864 | MS.gene25909:CDS | 35.0% | |
| AACTTCCAGAAGACTTAGAA+GGG | + | chr3.2:69380235-69380254 | MS.gene25909:CDS | 35.0% | |
| ACATAGTTTCATTTCCACCA+AGG | - | chr3.2:69379861-69379880 | None:intergenic | 35.0% | |
| ACATTTGCTTGGAAATCTTC+CGG | - | chr3.2:69380156-69380175 | None:intergenic | 35.0% | |
| ACTTGCAGGAACTAAAAAGT+AGG | - | chr3.2:69378182-69378201 | None:intergenic | 35.0% | |
| AGAACCAAAAGTAATGCAGA+TGG | - | chr3.2:69378629-69378648 | None:intergenic | 35.0% | |
| AGATACACATGGTAAGATAG+AGG | - | chr3.2:69377894-69377913 | None:intergenic | 35.0% | |
| AGGTTATTACGATGCATTCA+AGG | + | chr3.2:69380119-69380138 | MS.gene25909:CDS | 35.0% | |
| ATGCTACAAGGAGAGAAAAT+TGG | + | chr3.2:69378677-69378696 | MS.gene25909:CDS | 35.0% | |
| ATTCAAGGATCAATTAGACC+CGG | + | chr3.2:69380134-69380153 | MS.gene25909:CDS | 35.0% | |
| ATTTCCAAGCAAATGTACAG+AGG | + | chr3.2:69380160-69380179 | MS.gene25909:CDS | 35.0% | |
| CAATGAATATGTAGGTGGAT+AGG | + | chr3.2:69378479-69378498 | MS.gene25909:intron | 35.0% | |
| CCAAAAATAGGGAAGGATAA+AGG | - | chr3.2:69379299-69379318 | None:intergenic | 35.0% | |
| GAACCAAAAGTAATGCAGAT+GGG | - | chr3.2:69378628-69378647 | None:intergenic | 35.0% | |
| GATTGTTCTTTATGGTCTGT+TGG | - | chr3.2:69380645-69380664 | None:intergenic | 35.0% | |
| GCAGAAAATGTAAGTTCCAA+AGG | - | chr3.2:69378998-69379017 | None:intergenic | 35.0% | |
| GGCAATTTATTTGTCCAACT+TGG | + | chr3.2:69378040-69378059 | MS.gene25909:intron | 35.0% | |
| GGTATAGGTATACACAAAGA+TGG | + | chr3.2:69380388-69380407 | MS.gene25909:CDS | 35.0% | |
| GTGTAATGCATATAACAGCA+TGG | - | chr3.2:69379837-69379856 | None:intergenic | 35.0% | |
| GTTATATGCATTACACACCT+TGG | + | chr3.2:69379841-69379860 | MS.gene25909:intron | 35.0% | |
| GTTGGAACATTATGAGAAGA+GGG | + | chr3.2:69380410-69380429 | MS.gene25909:CDS | 35.0% | |
| TAAGTTCCAAAGGGTCTATA+AGG | - | chr3.2:69378988-69379007 | None:intergenic | 35.0% | |
| TAGGTATACACAAAGATGGT+TGG | + | chr3.2:69380392-69380411 | MS.gene25909:CDS | 35.0% | |
| TCATCACAAAATGGAAGAAG+TGG | - | chr3.2:69378708-69378727 | None:intergenic | 35.0% | |
| TGATGTTAAGGAAAAGGTTG+AGG | + | chr3.2:69380509-69380528 | MS.gene25909:CDS | 35.0% | |
| TGCTACAAGGAGAGAAAATT+GGG | + | chr3.2:69378678-69378697 | MS.gene25909:CDS | 35.0% | |
| TGGAGGAATTTATAAGCAAG+TGG | + | chr3.2:69380535-69380554 | MS.gene25909:CDS | 35.0% | |
| TTTATATGGCTAAAGGAGGA+AGG | + | chr3.2:69380358-69380377 | MS.gene25909:CDS | 35.0% | |
| ! | AACATAGCCTTAAATGACCT+TGG | + | chr3.2:69379261-69379280 | MS.gene25909:CDS | 35.0% |
| ! | ACAAAGGAAGATTTTCCAGT+TGG | - | chr3.2:69379203-69379222 | None:intergenic | 35.0% |
| ! | ATTCTACGTTTGTTAAGTGG+TGG | + | chr3.2:69380610-69380629 | MS.gene25909:CDS | 35.0% |
| ! | ATTTGTTGGGAGTGAAAAGT+GGG | + | chr3.2:69378263-69378282 | MS.gene25909:intron | 35.0% |
| ! | CATACTTTTGGTCCTTAAAG+AGG | - | chr3.2:69378228-69378247 | None:intergenic | 35.0% |
| ! | CCTTTATCCTTCCCTATTTT+TGG | + | chr3.2:69379296-69379315 | MS.gene25909:intron | 35.0% |
| ! | TACATTTTCTGCACTACAAG+TGG | + | chr3.2:69379006-69379025 | MS.gene25909:CDS | 35.0% |
| ! | TGGAGTTGGAAAGTTTTCTA+AGG | - | chr3.2:69378584-69378603 | None:intergenic | 35.0% |
| ! | TGGATTCTACGTTTGTTAAG+TGG | + | chr3.2:69380607-69380626 | MS.gene25909:CDS | 35.0% |
| ! | TTTTGGTCGAAAGAAGATAG+AGG | - | chr3.2:69378763-69378782 | None:intergenic | 35.0% |
| !! | AATTTGTTGGGAGTGAAAAG+TGG | + | chr3.2:69378262-69378281 | MS.gene25909:intron | 35.0% |
| !!! | ACTTTTGGTTCTCCTTTAGT+TGG | + | chr3.2:69378637-69378656 | MS.gene25909:CDS | 35.0% |
| !!! | CAAGCCTTTTGATGATGTTA+AGG | + | chr3.2:69380497-69380516 | MS.gene25909:CDS | 35.0% |
| !!! | GCTCATGAATGATTTGCTTT+TGG | - | chr3.2:69378815-69378834 | None:intergenic | 35.0% |
| AAGAAGCAGATAGTGTTTGC+AGG | + | chr3.2:69378514-69378533 | MS.gene25909:CDS | 40.0% | |
| AAGGATAAAGGTTGCATACC+AGG | - | chr3.2:69379287-69379306 | None:intergenic | 40.0% | |
| AAGGGTCTATAAGGACTCAA+AGG | - | chr3.2:69378979-69378998 | None:intergenic | 40.0% | |
| ACATCATCAAAAGGCTTGTC+AGG | - | chr3.2:69380495-69380514 | None:intergenic | 40.0% | |
| ACTTAGAAGGGAACGAAGAT+TGG | + | chr3.2:69380247-69380266 | MS.gene25909:CDS | 40.0% | |
| ATATGCATTACACACCTTGG+TGG | + | chr3.2:69379844-69379863 | MS.gene25909:intron | 40.0% | |
| CAAAAGTAATGCAGATGGGA+GGG | - | chr3.2:69378624-69378643 | None:intergenic | 40.0% | |
| CATTATGAGAAGAGGGATGA+AGG | + | chr3.2:69380417-69380436 | MS.gene25909:CDS | 40.0% | |
| CATTTGCTTGGAAATCTTCC+GGG | - | chr3.2:69380155-69380174 | None:intergenic | 40.0% | |
| CCATATAAACACGTCCATCA+CGG | - | chr3.2:69380347-69380366 | None:intergenic | 40.0% | |
| CGTGTTTATATGGCTAAAGG+AGG | + | chr3.2:69380354-69380373 | MS.gene25909:CDS | 40.0% | |
| GAACTTCCAGAAGACTTAGA+AGG | + | chr3.2:69380234-69380253 | MS.gene25909:CDS | 40.0% | |
| GAAGTAGTATGCTCAGACAA+AGG | - | chr3.2:69379219-69379238 | None:intergenic | 40.0% | |
| GGACGTGTTTATATGGCTAA+AGG | + | chr3.2:69380351-69380370 | MS.gene25909:CDS | 40.0% | |
| GGCTGATAAGGATGTGTTTA+AGG | + | chr3.2:69380572-69380591 | MS.gene25909:CDS | 40.0% | |
| GGTTGGAACATTATGAGAAG+AGG | + | chr3.2:69380409-69380428 | MS.gene25909:CDS | 40.0% | |
| TAAGGAAAAGGTTGAGGCAT+TGG | + | chr3.2:69380515-69380534 | MS.gene25909:CDS | 40.0% | |
| TGAGAAAGATGAGGCTGATA+AGG | + | chr3.2:69380560-69380579 | MS.gene25909:CDS | 40.0% | |
| TGTTGTGTACTTAGACCAAC+TGG | + | chr3.2:69379185-69379204 | MS.gene25909:CDS | 40.0% | |
| TTGAGTCCTTATAGACCCTT+TGG | + | chr3.2:69378979-69378998 | MS.gene25909:CDS | 40.0% | |
| TTGTCTGAGCATACTACTTC+AGG | + | chr3.2:69379219-69379238 | MS.gene25909:CDS | 40.0% | |
| ! | AATGTTGTCGCAGGCTTTTA+AGG | - | chr3.2:69379134-69379153 | None:intergenic | 40.0% |
| ! | ATCATGTTTATGGGCTGAAG+TGG | + | chr3.2:69380452-69380471 | MS.gene25909:CDS | 40.0% |
| ! | ATGTTGTCGCAGGCTTTTAA+GGG | - | chr3.2:69379133-69379152 | None:intergenic | 40.0% |
| ! | CATGCAACTTTGTAACTTGC+AGG | - | chr3.2:69378196-69378215 | None:intergenic | 40.0% |
| ! | TAGAAGACTAGTTGAGCCTT+TGG | + | chr3.2:69380290-69380309 | MS.gene25909:CDS | 40.0% |
| AAACCCTGATGCAATTCTGC+AGG | + | chr3.2:69379056-69379075 | MS.gene25909:CDS | 45.0% | |
| AAGAAGATAGAGGAGCTAGG+AGG | - | chr3.2:69378753-69378772 | None:intergenic | 45.0% | |
| AGACATTCAAGGAACCGTGA+TGG | + | chr3.2:69380330-69380349 | MS.gene25909:CDS | 45.0% | |
| ATGACCTGCAGAATTGCATC+AGG | - | chr3.2:69379063-69379082 | None:intergenic | 45.0% | |
| CAAGTGGCATGAGAAAGATG+AGG | + | chr3.2:69380551-69380570 | MS.gene25909:CDS | 45.0% | |
| CCAAAAGTAATGCAGATGGG+AGG | - | chr3.2:69378625-69378644 | None:intergenic | 45.0% | |
| CCAGTTCAAAATGTTGTCGC+AGG | - | chr3.2:69379143-69379162 | None:intergenic | 45.0% | |
| CGAAAGAAGATAGAGGAGCT+AGG | - | chr3.2:69378756-69378775 | None:intergenic | 45.0% | |
| CTAAAGGAGGAAGGCCAAAA+AGG | + | chr3.2:69380367-69380386 | MS.gene25909:CDS | 45.0% | |
| CTAGCCTCTGTACATTTGCT+TGG | - | chr3.2:69380167-69380186 | None:intergenic | 45.0% | |
| GGCTATTCTGGCAACACTTT+GGG | + | chr3.2:69378558-69378577 | MS.gene25909:CDS | 45.0% | |
| GGGAGTGAAAAGTGGGTATA+GGG | + | chr3.2:69378270-69378289 | MS.gene25909:intron | 45.0% | |
| TACCAGGCCAAGGTCATTTA+AGG | - | chr3.2:69379271-69379290 | None:intergenic | 45.0% | |
| TATGAGAAGAGGGATGAAGG+TGG | + | chr3.2:69380420-69380439 | MS.gene25909:CDS | 45.0% | |
| TCGTTCCCTTCTAAGTCTTC+TGG | - | chr3.2:69380243-69380262 | None:intergenic | 45.0% | |
| TCTGAGCATACTACTTCAGG+TGG | + | chr3.2:69379222-69379241 | MS.gene25909:CDS | 45.0% | |
| TGACCTGCAGAATTGCATCA+GGG | - | chr3.2:69379062-69379081 | None:intergenic | 45.0% | |
| TGGACAGTTACAGAGAAACG+CGG | + | chr3.2:69380082-69380101 | MS.gene25909:CDS | 45.0% | |
| TGGCTATTCTGGCAACACTT+TGG | + | chr3.2:69378557-69378576 | MS.gene25909:CDS | 45.0% | |
| TGGGAGTGAAAAGTGGGTAT+AGG | + | chr3.2:69378269-69378288 | MS.gene25909:intron | 45.0% | |
| TTCATGAGCGAATCGAGTCT+TGG | + | chr3.2:69378826-69378845 | MS.gene25909:CDS | 45.0% | |
| TTTCATCCTATCCTCCACAG+CGG | - | chr3.2:69380058-69380077 | None:intergenic | 45.0% | |
| ! | ACATGCTGCTTGTAGGCTAA+TGG | + | chr3.2:69378912-69378931 | MS.gene25909:CDS | 45.0% |
| ! | ATGTTTATGGGCTGAAGTGG+AGG | + | chr3.2:69380455-69380474 | MS.gene25909:CDS | 45.0% |
| ! | CATGCTGCTTGTAGGCTAAT+GGG | + | chr3.2:69378913-69378932 | MS.gene25909:CDS | 45.0% |
| ! | CCTCCCATCTGCATTACTTT+TGG | + | chr3.2:69378622-69378641 | MS.gene25909:CDS | 45.0% |
| ! | CCTGCGACAACATTTTGAAC+TGG | + | chr3.2:69379140-69379159 | MS.gene25909:CDS | 45.0% |
| ! | GAGGAAGGCCAAAAAGGTAT+AGG | + | chr3.2:69380373-69380392 | MS.gene25909:CDS | 45.0% |
| ! | GCTAGAACTTGCAGGAGTAT+GGG | + | chr3.2:69380182-69380201 | MS.gene25909:CDS | 45.0% |
| ! | GGGATACGATCGGAAGATTT+TGG | - | chr3.2:69378604-69378623 | None:intergenic | 45.0% |
| ! | TCACAAGACATGCTGCTTGT+AGG | + | chr3.2:69378905-69378924 | MS.gene25909:CDS | 45.0% |
| ! | TGTTGTCGCAGGCTTTTAAG+GGG | - | chr3.2:69379132-69379151 | None:intergenic | 45.0% |
| !! | AAGCTCTGAAGAAGAAGCTG+AGG | + | chr3.2:69379101-69379120 | MS.gene25909:CDS | 45.0% |
| !! | CCGTGATGGACGTGTTTATA+TGG | + | chr3.2:69380344-69380363 | MS.gene25909:CDS | 45.0% |
| !!! | CGATCGGAAGATTTTGGAGT+TGG | - | chr3.2:69378598-69378617 | None:intergenic | 45.0% |
| AAAGGTTGCATACCAGGCCA+AGG | - | chr3.2:69379281-69379300 | None:intergenic | 50.0% | |
| ACAAAAGATAGCCGCTGTGG+AGG | + | chr3.2:69380044-69380063 | MS.gene25909:CDS | 50.0% | |
| ACGCGGGGACATCAGAAAAA+AGG | + | chr3.2:69380099-69380118 | MS.gene25909:CDS | 50.0% | |
| AGAGGAGCTAGGAGGATTCT+TGG | - | chr3.2:69378745-69378764 | None:intergenic | 50.0% | |
| AGCCTTAAATGACCTTGGCC+TGG | + | chr3.2:69379266-69379285 | MS.gene25909:CDS | 50.0% | |
| AGTGTTGCCAGAATAGCCAC+TGG | - | chr3.2:69378556-69378575 | None:intergenic | 50.0% | |
| CAGCTGCAGCATTAGAGGAA+CGG | + | chr3.2:69379995-69380014 | MS.gene25909:CDS | 50.0% | |
| GACAGTTACAGAGAAACGCG+GGG | + | chr3.2:69380084-69380103 | MS.gene25909:CDS | 50.0% | |
| GCTACAAAAGATAGCCGCTG+TGG | + | chr3.2:69380041-69380060 | MS.gene25909:CDS | 50.0% | |
| GGACAGTTACAGAGAAACGC+GGG | + | chr3.2:69380083-69380102 | MS.gene25909:CDS | 50.0% | |
| GGCTAGAACTTGCAGGAGTA+TGG | + | chr3.2:69380181-69380200 | MS.gene25909:CDS | 50.0% | |
| GTACAGAGGCTAGAACTTGC+AGG | + | chr3.2:69380174-69380193 | MS.gene25909:CDS | 50.0% | |
| TCAAGCAGCTGCAGCATTAG+AGG | + | chr3.2:69379990-69380009 | MS.gene25909:CDS | 50.0% | |
| TGCACTACAAGTGGCGATGA+AGG | + | chr3.2:69379015-69379034 | MS.gene25909:CDS | 50.0% | |
| ! | GGAGGATAGGATGAAAGCAC+TGG | + | chr3.2:69380062-69380081 | MS.gene25909:CDS | 50.0% |
| !! | GGAAAAGGTTGAGGCATTGG+AGG | + | chr3.2:69380518-69380537 | MS.gene25909:CDS | 50.0% |
| AGATAGCCGCTGTGGAGGAT+AGG | + | chr3.2:69380049-69380068 | MS.gene25909:CDS | 55.0% | |
| GCAGATGGGAGGGATACGAT+CGG | - | chr3.2:69378614-69378633 | None:intergenic | 55.0% | |
| GTGTTTGCAGGACACTCGTC+TGG | + | chr3.2:69378526-69378545 | MS.gene25909:CDS | 55.0% | |
| TGGTGGTCCAGTGGCTATTC+TGG | + | chr3.2:69378546-69378565 | MS.gene25909:CDS | 55.0% | |
| TTTGCAGGACACTCGTCTGG+TGG | + | chr3.2:69378529-69378548 | MS.gene25909:CDS | 55.0% | |
| ACACTCGTCTGGTGGTCCAG+TGG | + | chr3.2:69378537-69378556 | MS.gene25909:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 69377790 | 69380692 | 69377790 | ID=MS.gene25909 |
| chr3.2 | mRNA | 69377790 | 69380692 | 69377790 | ID=MS.gene25909.t1;Parent=MS.gene25909 |
| chr3.2 | exon | 69377790 | 69377803 | 69377790 | ID=MS.gene25909.t1.exon1;Parent=MS.gene25909.t1 |
| chr3.2 | CDS | 69377790 | 69377803 | 69377790 | ID=cds.MS.gene25909.t1;Parent=MS.gene25909.t1 |
| chr3.2 | exon | 69377827 | 69377866 | 69377827 | ID=MS.gene25909.t1.exon2;Parent=MS.gene25909.t1 |
| chr3.2 | CDS | 69377827 | 69377866 | 69377827 | ID=cds.MS.gene25909.t1;Parent=MS.gene25909.t1 |
| chr3.2 | exon | 69378493 | 69379287 | 69378493 | ID=MS.gene25909.t1.exon3;Parent=MS.gene25909.t1 |
| chr3.2 | CDS | 69378493 | 69379287 | 69378493 | ID=cds.MS.gene25909.t1;Parent=MS.gene25909.t1 |
| chr3.2 | exon | 69379967 | 69380692 | 69379967 | ID=MS.gene25909.t1.exon4;Parent=MS.gene25909.t1 |
| chr3.2 | CDS | 69379967 | 69380692 | 69379967 | ID=cds.MS.gene25909.t1;Parent=MS.gene25909.t1 |
| Gene Sequence |
| Protein sequence |
