Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24776.t1 | XP_003609971.1 | 95.3 | 253 | 12 | 0 | 1 | 253 | 1 | 253 | 1.40E-124 | 455.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24776.t1 | O65282 | 75.3 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 6.1e-100 | 365.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24776.t1 | G7JS70 | 95.3 | 253 | 12 | 0 | 1 | 253 | 1 | 253 | 1.0e-124 | 455.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene24776 | 0.820541 | 6.50E-53 | -1.69E-46 |
| MS.gene050099 | MS.gene24776 | 0.878326 | 3.07E-69 | -1.69E-46 |
| MS.gene050767 | MS.gene24776 | 0.80074 | 1.25E-48 | -1.69E-46 |
| MS.gene050770 | MS.gene24776 | 0.801757 | 7.74E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene24776 | 0.837291 | 5.67E-57 | -1.69E-46 |
| MS.gene051471 | MS.gene24776 | 0.84991 | 2.39E-60 | -1.69E-46 |
| MS.gene051662 | MS.gene24776 | 0.839186 | 1.84E-57 | -1.69E-46 |
| MS.gene051663 | MS.gene24776 | 0.826993 | 2.00E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene24776 | 0.824587 | 7.44E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene24776 | 0.81852 | 1.88E-52 | -1.69E-46 |
| MS.gene052326 | MS.gene24776 | 0.803675 | 3.11E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene24776 | 0.826582 | 2.51E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene24776 | 0.82319 | 1.58E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene24776 | 0.827781 | 1.29E-54 | -1.69E-46 |
| MS.gene055428 | MS.gene24776 | 0.802769 | 4.79E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene24776 | 0.803061 | 4.17E-49 | -1.69E-46 |
| MS.gene057439 | MS.gene24776 | 0.840643 | 7.68E-58 | -1.69E-46 |
| MS.gene058845 | MS.gene24776 | 0.820826 | 5.59E-53 | -1.69E-46 |
| MS.gene059228 | MS.gene24776 | 0.808153 | 3.56E-50 | -1.69E-46 |
| MS.gene059326 | MS.gene24776 | 0.85944 | 4.13E-63 | -1.69E-46 |
| MS.gene059518 | MS.gene24776 | 0.817494 | 3.20E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene24776 | 0.803085 | 4.13E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene24776 | 0.811855 | 5.68E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24508 | MS.gene24776 | PPI |
| MS.gene66498 | MS.gene24776 | PPI |
| MS.gene66497 | MS.gene24776 | PPI |
| MS.gene24509 | MS.gene24776 | PPI |
| MS.gene051662 | MS.gene24776 | PPI |
| MS.gene39671 | MS.gene24776 | PPI |
| MS.gene39354 | MS.gene24776 | PPI |
| MS.gene24776 | MS.gene00537 | PPI |
| MS.gene24776 | MS.gene00538 | PPI |
| MS.gene022688 | MS.gene24776 | PPI |
| MS.gene051663 | MS.gene24776 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24776.t1 | MTR_4g124910 | 95.257 | 253 | 12 | 0 | 1 | 253 | 1 | 253 | 1.37e-174 | 481 |
| MS.gene24776.t1 | MTR_2g043230 | 76.378 | 254 | 59 | 1 | 1 | 253 | 1 | 254 | 6.61e-142 | 398 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24776.t1 | AT5G20720 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.20e-135 | 382 |
| MS.gene24776.t1 | AT5G20720 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.20e-135 | 382 |
| MS.gene24776.t1 | AT5G20720 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.20e-135 | 382 |
| MS.gene24776.t1 | AT5G20720 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.20e-135 | 382 |
Find 64 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTCATTCCCTGCATATT+TGG | 0.259970 | 8.2:-8016752 | None:intergenic |
| AACTGTATTCCCGGGTGAAA+TGG | 0.321202 | 8.2:-8016722 | None:intergenic |
| CCTCGTAACAATGCTAGAAT+TGG | 0.335567 | 8.2:+8014841 | MS.gene24776:CDS |
| TTCCCGGGTGAAATGGATAA+TGG | 0.363835 | 8.2:-8016715 | None:intergenic |
| TTTAAGATCTTTGACCTCTT+CGG | 0.402758 | 8.2:-8015979 | None:intergenic |
| AGGAACCTTTCTTCCTTTGA+AGG | 0.413360 | 8.2:+8014793 | MS.gene24776:CDS |
| GGAGTACAAAACTGTATTCC+CGG | 0.420138 | 8.2:-8016731 | None:intergenic |
| TATCAAGACTCTGTCATTCA+AGG | 0.421253 | 8.2:-8016003 | None:intergenic |
| CCTTCGTCATCCACAGGCCC+TGG | 0.444066 | 8.2:-8016682 | None:intergenic |
| GGCTTTGATTGAGCAGTTGA+TGG | 0.449739 | 8.2:-8015692 | None:intergenic |
| CTGTTGCCTTCGTCATCCAC+AGG | 0.452383 | 8.2:-8016688 | None:intergenic |
| CAGGTGATAGCTGTTGGTCC+AGG | 0.460455 | 8.2:+8016664 | MS.gene24776:intron |
| GAATGACAGAGTCTTGATAA+AGG | 0.473936 | 8.2:+8016007 | MS.gene24776:CDS |
| TTGGAGACGGGAAGACAGTT+GGG | 0.483437 | 8.2:+8015738 | MS.gene24776:CDS |
| GCAATCCTTCAAAGGAAGAA+AGG | 0.496887 | 8.2:-8014798 | None:intergenic |
| GCCAATGGATGGCTTATCCT+TGG | 0.505865 | 8.2:-8016241 | None:intergenic |
| AATGACTTCAAAGGCAAAGA+TGG | 0.508584 | 8.2:+8016766 | MS.gene24776:CDS |
| GAGGTAGTTGCTGTTGGAGA+CGG | 0.521962 | 8.2:+8015725 | MS.gene24776:CDS |
| GTTGGAGACGGGAAGACAGT+TGG | 0.523055 | 8.2:+8015737 | MS.gene24776:CDS |
| TGCTGGTGGTTTGTTGCTCA+CGG | 0.524264 | 8.2:+8016212 | MS.gene24776:CDS |
| ATCAAGACTCTGTCATTCAA+GGG | 0.529761 | 8.2:-8016002 | None:intergenic |
| CTGCTCAATCAAAGCCTCAA+GGG | 0.533192 | 8.2:+8015699 | MS.gene24776:CDS |
| AGGTAGTTGCTGTTGGAGAC+GGG | 0.539082 | 8.2:+8015726 | MS.gene24776:CDS |
| GCCACTAGGTGATAGAGTAC+TGG | 0.539283 | 8.2:+8015622 | MS.gene24776:CDS |
| AAGCTTACCGTGCCAATGGA+TGG | 0.542126 | 8.2:-8016252 | None:intergenic |
| AGAAAAGCTTACCGTGCCAA+TGG | 0.548046 | 8.2:-8016256 | None:intergenic |
| GGAACTGAAGTGGAGTTCAA+TGG | 0.549387 | 8.2:+8015906 | MS.gene24776:CDS |
| AGCTGTTGGTCCAGGGCCTG+TGG | 0.552111 | 8.2:+8016672 | MS.gene24776:CDS |
| GGAAGTTCGCAATCCTTCAA+AGG | 0.561777 | 8.2:-8014806 | None:intergenic |
| GCGGCTTTAACAACAATAGA+CGG | 0.565089 | 8.2:-8014886 | None:intergenic |
| TTCAAAACATCTTATACTGA+AGG | 0.568271 | 8.2:+8015929 | MS.gene24776:CDS |
| CATACAACTGTCAAGCCACT+AGG | 0.568378 | 8.2:+8015608 | MS.gene24776:CDS |
| ACCAAGGATAAGCCATCCAT+TGG | 0.568643 | 8.2:+8016240 | MS.gene24776:CDS |
| TATGCAGGGAATGACTTCAA+AGG | 0.569312 | 8.2:+8016757 | MS.gene24776:CDS |
| TTTGAGAGCCTCAGATGTCA+TGG | 0.571249 | 8.2:+8016804 | MS.gene24776:CDS |
| GAGTACAAAACTGTATTCCC+GGG | 0.572521 | 8.2:-8016730 | None:intergenic |
| CTGAAGGATGATGACATCGT+TGG | 0.572824 | 8.2:+8015945 | MS.gene24776:CDS |
| TGCTCAATCAAAGCCTCAAG+GGG | 0.578517 | 8.2:+8015700 | MS.gene24776:CDS |
| AGGTGATAGCTGTTGGTCCA+GGG | 0.579593 | 8.2:+8016665 | MS.gene24776:intron |
| AAAGTATGCAGGAACTGAAG+TGG | 0.581171 | 8.2:+8015896 | MS.gene24776:CDS |
| ACTGCTCAATCAAAGCCTCA+AGG | 0.582194 | 8.2:+8015698 | MS.gene24776:CDS |
| GTTGTGTACTCAAAGTATGC+AGG | 0.590902 | 8.2:+8015885 | MS.gene24776:CDS |
| AAACCATTATCCATTTCACC+CGG | 0.592297 | 8.2:+8016712 | MS.gene24776:CDS |
| CGGCTTTAACAACAATAGAC+GGG | 0.595648 | 8.2:-8014885 | None:intergenic |
| GGATGCAGAAGAGAAAACTC+AGG | 0.597980 | 8.2:+8015655 | MS.gene24776:CDS |
| ACCAGTACTCTATCACCTAG+TGG | 0.604909 | 8.2:-8015623 | None:intergenic |
| CAAAGTGGACATTAGTGTGA+AGG | 0.607471 | 8.2:+8015766 | MS.gene24776:CDS |
| GAATTGGTATTCTTACACAA+AGG | 0.614844 | 8.2:+8014857 | MS.gene24776:CDS |
| CCAGGGCCTGTGGATGACGA+AGG | 0.620963 | 8.2:+8016682 | MS.gene24776:CDS |
| AAAATAGCCAAAATTAAGAG+AGG | 0.622578 | 8.2:-8016831 | None:intergenic |
| GTTGCTCACGGAAGCAACCA+AGG | 0.626344 | 8.2:+8016224 | MS.gene24776:CDS |
| GAGGATAGCCATGACATCTG+AGG | 0.634831 | 8.2:-8016812 | None:intergenic |
| CCAATTCTAGCATTGTTACG+AGG | 0.641555 | 8.2:-8014841 | None:intergenic |
| AACCATTATCCATTTCACCC+GGG | 0.641591 | 8.2:+8016713 | MS.gene24776:CDS |
| GTTACGAGGAAAATGAATTG+CGG | 0.642882 | 8.2:-8014827 | None:intergenic |
| GGATAAGCCATCCATTGGCA+CGG | 0.647992 | 8.2:+8016245 | MS.gene24776:CDS |
| CTGCTTCATCGATTTCTACG+AGG | 0.656045 | 8.2:+8014773 | MS.gene24776:CDS |
| TGGTATTCTTGAAACCGAAG+AGG | 0.662324 | 8.2:+8015965 | MS.gene24776:CDS |
| GCTGCAGGTTGCAGAAGCTG+AGG | 0.680718 | 8.2:+8016182 | MS.gene24776:intron |
| GATGCAGAAGAGAAAACTCA+GGG | 0.684794 | 8.2:+8015656 | MS.gene24776:CDS |
| ATGTAACAGGTGATAGCTGT+TGG | 0.691284 | 8.2:+8016658 | MS.gene24776:intron |
| GACAGTTGGGAAGAACAAAG+TGG | 0.692016 | 8.2:+8015751 | MS.gene24776:CDS |
| GCAGAAGAGAAAACTCAGGG+TGG | 0.728959 | 8.2:+8015659 | MS.gene24776:CDS |
| GCTCAATCAAAGCCTCAAGG+GGG | 0.730531 | 8.2:+8015701 | MS.gene24776:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAATAATACCT+TGG | - | chr8.2:8014926-8014945 | None:intergenic | 10.0% |
| !! | AAAAATAAAAATAATACCTT+GGG | - | chr8.2:8014925-8014944 | None:intergenic | 10.0% |
| !!! | AAGGTATTATTTTTATTTTT+TGG | + | chr8.2:8014925-8014944 | MS.gene24776:intron | 10.0% |
| !!! | AGGTATTATTTTTATTTTTT+GGG | + | chr8.2:8014926-8014945 | MS.gene24776:intron | 10.0% |
| !!! | TTTTCAAAAAATTAAAACAA+TGG | + | chr8.2:8016395-8016414 | MS.gene24776:intron | 10.0% |
| !! | AAAATAAAAATAATACCTTG+GGG | - | chr8.2:8014924-8014943 | None:intergenic | 15.0% |
| !! | CGAAAAATATTCATAAATAT+TGG | - | chr8.2:8015403-8015422 | None:intergenic | 15.0% |
| !! | GTTAAGACAAATAATTAAAT+GGG | - | chr8.2:8016089-8016108 | None:intergenic | 15.0% |
| !! | AAATAAAAATAATACCTTGG+GGG | - | chr8.2:8014923-8014942 | None:intergenic | 20.0% |
| !! | AAGTATACTGTTTCAAAAAA+AGG | - | chr8.2:8016287-8016306 | None:intergenic | 20.0% |
| !! | ACAAGATGAAATTACTAATA+AGG | - | chr8.2:8015586-8015605 | None:intergenic | 20.0% |
| !! | CAAAAAATTAAAACAATGGA+TGG | + | chr8.2:8016399-8016418 | MS.gene24776:intron | 20.0% |
| !! | GAAAAATATTCAAAAATGGT+GGG | - | chr8.2:8015377-8015396 | None:intergenic | 20.0% |
| !! | GGTTAAGACAAATAATTAAA+TGG | - | chr8.2:8016090-8016109 | None:intergenic | 20.0% |
| !! | GTCTGAAAAATATTCAAAAA+TGG | - | chr8.2:8015381-8015400 | None:intergenic | 20.0% |
| !! | TGAAAAATATTCAAAAATGG+TGG | - | chr8.2:8015378-8015397 | None:intergenic | 20.0% |
| !! | TTCAGACCAATAAAAAAAAA+GGG | + | chr8.2:8015302-8015321 | MS.gene24776:intron | 20.0% |
| !! | TTTCAGACCAATAAAAAAAA+AGG | + | chr8.2:8015301-8015320 | MS.gene24776:intron | 20.0% |
| !!! | TACATTTTCTCTTATACTAA+GGG | - | chr8.2:8015194-8015213 | None:intergenic | 20.0% |
| !!! | TATTTTTATTTTTTGGGTCA+TGG | + | chr8.2:8014932-8014951 | MS.gene24776:intron | 20.0% |
| ! | TAACACCTTAATGCAAAATA+TGG | - | chr8.2:8016111-8016130 | None:intergenic | 25.0% |
| ! | TGTAATGTATTTCTCTTTAC+AGG | + | chr8.2:8015851-8015870 | MS.gene24776:intron | 25.0% |
| ! | TTCAAAACATCTTATACTGA+AGG | + | chr8.2:8015929-8015948 | MS.gene24776:CDS | 25.0% |
| !! | ACATTTTCTCTTATACTAAG+GGG | - | chr8.2:8015193-8015212 | None:intergenic | 25.0% |
| !! | CTTAACCATATTTTGCATTA+AGG | + | chr8.2:8016103-8016122 | MS.gene24776:intron | 25.0% |
| !! | GTACATTTTCTCTTATACTA+AGG | - | chr8.2:8015195-8015214 | None:intergenic | 25.0% |
| !! | TTTATTTATTGCTTTAGCTC+AGG | + | chr8.2:8016541-8016560 | MS.gene24776:intron | 25.0% |
| AAACACTAGAAATAATCCCA+TGG | - | chr8.2:8015528-8015547 | None:intergenic | 30.0% | |
| AACACTAGAAATAATCCCAT+GGG | - | chr8.2:8015527-8015546 | None:intergenic | 30.0% | |
| AATAAAAAAAAAGGGCAACC+CGG | + | chr8.2:8015310-8015329 | MS.gene24776:intron | 30.0% | |
| AATTAAAACAATGGATGGTC+TGG | + | chr8.2:8016404-8016423 | MS.gene24776:intron | 30.0% | |
| AGAATTGCAAGAATGTGATT+TGG | + | chr8.2:8016368-8016387 | MS.gene24776:intron | 30.0% | |
| CCAAAATAAAAGAAAGACCA+AGG | - | chr8.2:8015826-8015845 | None:intergenic | 30.0% | |
| GAATGGTTATTTACATACCT+AGG | - | chr8.2:8016626-8016645 | None:intergenic | 30.0% | |
| GAATTGCAAGAATGTGATTT+GGG | + | chr8.2:8016369-8016388 | MS.gene24776:intron | 30.0% | |
| GAATTGGTATTCTTACACAA+AGG | + | chr8.2:8014857-8014876 | MS.gene24776:CDS | 30.0% | |
| GCAATGTTATATCGTATGAA+GGG | + | chr8.2:8016336-8016355 | MS.gene24776:intron | 30.0% | |
| GTTGTGTTTATAAGCTATCT+TGG | + | chr8.2:8015045-8015064 | MS.gene24776:intron | 30.0% | |
| TTGAAAGAGCTTATAGCTTA+TGG | - | chr8.2:8015112-8015131 | None:intergenic | 30.0% | |
| ! | AATAACCATTCTACTCCTTT+TGG | + | chr8.2:8016635-8016654 | MS.gene24776:intron | 30.0% |
| ! | CATTAAGGTGTTACGTTTAA+AGG | + | chr8.2:8016118-8016137 | MS.gene24776:intron | 30.0% |
| ! | TGGATTTTCTTCATTATCTG+CGG | + | chr8.2:8014952-8014971 | MS.gene24776:intron | 30.0% |
| ! | TTTAAGATCTTTGACCTCTT+CGG | - | chr8.2:8015982-8016001 | None:intergenic | 30.0% |
| ! | TTTTGTACTCCAAATATGCA+GGG | + | chr8.2:8016743-8016762 | MS.gene24776:CDS | 30.0% |
| !! | CCTTGGTCTTTCTTTTATTT+TGG | + | chr8.2:8015823-8015842 | MS.gene24776:intron | 30.0% |
| !! | TAGAGTACTGGTAAAAATCA+AGG | + | chr8.2:8015634-8015653 | MS.gene24776:CDS | 30.0% |
| !!! | TTGTTTTGATCGAGTAGTTT+TGG | + | chr8.2:8016599-8016618 | MS.gene24776:intron | 30.0% |
| AAACCATTATCCATTTCACC+CGG | + | chr8.2:8016712-8016731 | MS.gene24776:CDS | 35.0% | |
| AAAGAAAGACCAAGGCTTAA+AGG | - | chr8.2:8015818-8015837 | None:intergenic | 35.0% | |
| AACACATTCTACCGTCTTAA+GGG | - | chr8.2:8016496-8016515 | None:intergenic | 35.0% | |
| AATGACTTCAAAGGCAAAGA+TGG | + | chr8.2:8016766-8016785 | MS.gene24776:CDS | 35.0% | |
| ACCTGCAGCATCATAATTAA+AGG | - | chr8.2:8016171-8016190 | None:intergenic | 35.0% | |
| ACTAGCATTATCCCTTAAGA+CGG | + | chr8.2:8016482-8016501 | MS.gene24776:intron | 35.0% | |
| ATCAAGACTCTGTCATTCAA+GGG | - | chr8.2:8016005-8016024 | None:intergenic | 35.0% | |
| ATCTCATAATGCACTTGAGT+GGG | - | chr8.2:8015138-8015157 | None:intergenic | 35.0% | |
| ATGTATTTCTCTTTACAGGC+AGG | + | chr8.2:8015855-8015874 | MS.gene24776:intron | 35.0% | |
| GAATGACAGAGTCTTGATAA+AGG | + | chr8.2:8016007-8016026 | MS.gene24776:CDS | 35.0% | |
| GGCAATGTTATATCGTATGA+AGG | + | chr8.2:8016335-8016354 | MS.gene24776:intron | 35.0% | |
| GTTACGAGGAAAATGAATTG+CGG | - | chr8.2:8014830-8014849 | None:intergenic | 35.0% | |
| TAAAGGATTCCATAAGCTAG+TGG | - | chr8.2:8015801-8015820 | None:intergenic | 35.0% | |
| TACATCCAAAAGGAGTAGAA+TGG | - | chr8.2:8016643-8016662 | None:intergenic | 35.0% | |
| TATCAAGACTCTGTCATTCA+AGG | - | chr8.2:8016006-8016025 | None:intergenic | 35.0% | |
| TATCACCTGTTACATCCAAA+AGG | - | chr8.2:8016653-8016672 | None:intergenic | 35.0% | |
| TATCTCATAATGCACTTGAG+TGG | - | chr8.2:8015139-8015158 | None:intergenic | 35.0% | |
| TGTTATATCGTATGAAGGGA+AGG | + | chr8.2:8016340-8016359 | MS.gene24776:intron | 35.0% | |
| TTATGGAATCCTTTAAGCCT+TGG | + | chr8.2:8015806-8015825 | MS.gene24776:intron | 35.0% | |
| ! | AACACCACTCTTCTAAAAGA+GGG | + | chr8.2:8016314-8016333 | MS.gene24776:intron | 35.0% |
| ! | GTTTTGTACTCCAAATATGC+AGG | + | chr8.2:8016742-8016761 | MS.gene24776:CDS | 35.0% |
| ! | TAACACCACTCTTCTAAAAG+AGG | + | chr8.2:8016313-8016332 | MS.gene24776:intron | 35.0% |
| !!! | GGGTTGCCCTTTTTTTTTAT+TGG | - | chr8.2:8015311-8015330 | None:intergenic | 35.0% |
| AAAGTATGCAGGAACTGAAG+TGG | + | chr8.2:8015896-8015915 | MS.gene24776:CDS | 40.0% | |
| AACCATTATCCATTTCACCC+GGG | + | chr8.2:8016713-8016732 | MS.gene24776:CDS | 40.0% | |
| ACAGAGTCTTGATAAAGGTG+TGG | + | chr8.2:8016012-8016031 | MS.gene24776:intron | 40.0% | |
| AGAAATAATCCCATGGGACA+GGG | - | chr8.2:8015521-8015540 | None:intergenic | 40.0% | |
| AGGAACCTTTCTTCCTTTGA+AGG | + | chr8.2:8014793-8014812 | MS.gene24776:CDS | 40.0% | |
| ATGTAACAGGTGATAGCTGT+TGG | + | chr8.2:8016658-8016677 | MS.gene24776:intron | 40.0% | |
| CAAAGTGGACATTAGTGTGA+AGG | + | chr8.2:8015766-8015785 | MS.gene24776:CDS | 40.0% | |
| CAACACATTCTACCGTCTTA+AGG | - | chr8.2:8016497-8016516 | None:intergenic | 40.0% | |
| CCAATTCTAGCATTGTTACG+AGG | - | chr8.2:8014844-8014863 | None:intergenic | 40.0% | |
| CCTCGTAACAATGCTAGAAT+TGG | + | chr8.2:8014841-8014860 | MS.gene24776:CDS | 40.0% | |
| GAAGTCATTCCCTGCATATT+TGG | - | chr8.2:8016755-8016774 | None:intergenic | 40.0% | |
| GAGTACAAAACTGTATTCCC+GGG | - | chr8.2:8016733-8016752 | None:intergenic | 40.0% | |
| GATGCAGAAGAGAAAACTCA+GGG | + | chr8.2:8015656-8015675 | MS.gene24776:CDS | 40.0% | |
| GCAATCCTTCAAAGGAAGAA+AGG | - | chr8.2:8014801-8014820 | None:intergenic | 40.0% | |
| GCCTTTAATTATGATGCTGC+AGG | + | chr8.2:8016167-8016186 | MS.gene24776:intron | 40.0% | |
| GGAGTACAAAACTGTATTCC+CGG | - | chr8.2:8016734-8016753 | None:intergenic | 40.0% | |
| GTTGTGTACTCAAAGTATGC+AGG | + | chr8.2:8015885-8015904 | MS.gene24776:CDS | 40.0% | |
| TAGAAATAATCCCATGGGAC+AGG | - | chr8.2:8015522-8015541 | None:intergenic | 40.0% | |
| TATGCAGGGAATGACTTCAA+AGG | + | chr8.2:8016757-8016776 | MS.gene24776:CDS | 40.0% | |
| TGGTATTCTTGAAACCGAAG+AGG | + | chr8.2:8015965-8015984 | MS.gene24776:CDS | 40.0% | |
| ! | ATTGCTTTAGCTCAGGTCAT+TGG | + | chr8.2:8016548-8016567 | MS.gene24776:intron | 40.0% |
| ! | CGGCTTTAACAACAATAGAC+GGG | - | chr8.2:8014888-8014907 | None:intergenic | 40.0% |
| ! | CTACTCCTTTTGGATGTAAC+AGG | + | chr8.2:8016645-8016664 | MS.gene24776:intron | 40.0% |
| ! | GCGGCTTTAACAACAATAGA+CGG | - | chr8.2:8014889-8014908 | None:intergenic | 40.0% |
| ! | TTTAGCTCAGGTCATTGGTT+TGG | + | chr8.2:8016553-8016572 | MS.gene24776:intron | 40.0% |
| !! | ATTGCCCTCTTTTAGAAGAG+TGG | - | chr8.2:8016321-8016340 | None:intergenic | 40.0% |
| AACTGTATTCCCGGGTGAAA+TGG | - | chr8.2:8016725-8016744 | None:intergenic | 45.0% | |
| ACCAAGGATAAGCCATCCAT+TGG | + | chr8.2:8016240-8016259 | MS.gene24776:CDS | 45.0% | |
| ACCAGTACTCTATCACCTAG+TGG | - | chr8.2:8015626-8015645 | None:intergenic | 45.0% | |
| ACTGCTCAATCAAAGCCTCA+AGG | + | chr8.2:8015698-8015717 | MS.gene24776:CDS | 45.0% | |
| AGAAAAGCTTACCGTGCCAA+TGG | - | chr8.2:8016259-8016278 | None:intergenic | 45.0% | |
| ATACATAAGCCCTGTCCCAT+GGG | + | chr8.2:8015509-8015528 | MS.gene24776:intron | 45.0% | |
| CATACAACTGTCAAGCCACT+AGG | + | chr8.2:8015608-8015627 | MS.gene24776:CDS | 45.0% | |
| CTACAGCGAGAGATCAAAGT+AGG | + | chr8.2:8015243-8015262 | MS.gene24776:intron | 45.0% | |
| CTGAAGGATGATGACATCGT+TGG | + | chr8.2:8015945-8015964 | MS.gene24776:CDS | 45.0% | |
| CTGCTCAATCAAAGCCTCAA+GGG | + | chr8.2:8015699-8015718 | MS.gene24776:CDS | 45.0% | |
| GAAGCTGAGGAAAAAACTGC+TGG | + | chr8.2:8016195-8016214 | MS.gene24776:CDS | 45.0% | |
| GACAGTTGGGAAGAACAAAG+TGG | + | chr8.2:8015751-8015770 | MS.gene24776:CDS | 45.0% | |
| GGAACTGAAGTGGAGTTCAA+TGG | + | chr8.2:8015906-8015925 | MS.gene24776:CDS | 45.0% | |
| GGAAGTTCGCAATCCTTCAA+AGG | - | chr8.2:8014809-8014828 | None:intergenic | 45.0% | |
| GGATGCAGAAGAGAAAACTC+AGG | + | chr8.2:8015655-8015674 | MS.gene24776:CDS | 45.0% | |
| GGGATAATGCTAGTTGCTAC+AGG | - | chr8.2:8016476-8016495 | None:intergenic | 45.0% | |
| TATACATAAGCCCTGTCCCA+TGG | + | chr8.2:8015508-8015527 | MS.gene24776:intron | 45.0% | |
| TGCTCAATCAAAGCCTCAAG+GGG | + | chr8.2:8015700-8015719 | MS.gene24776:CDS | 45.0% | |
| TTCCCGGGTGAAATGGATAA+TGG | - | chr8.2:8016718-8016737 | None:intergenic | 45.0% | |
| TTTGAGAGCCTCAGATGTCA+TGG | + | chr8.2:8016804-8016823 | MS.gene24776:CDS | 45.0% | |
| ! | GGCTTTGATTGAGCAGTTGA+TGG | - | chr8.2:8015695-8015714 | None:intergenic | 45.0% |
| ! | TGAGTGATGCCACTAGCTTA+TGG | + | chr8.2:8015789-8015808 | MS.gene24776:intron | 45.0% |
| !! | CTGCTTCATCGATTTCTACG+AGG | + | chr8.2:8014773-8014792 | MS.gene24776:CDS | 45.0% |
| !!! | GATCGAGTAGTTTTGGTCCT+AGG | + | chr8.2:8016606-8016625 | MS.gene24776:intron | 45.0% |
| AAGCTTACCGTGCCAATGGA+TGG | - | chr8.2:8016255-8016274 | None:intergenic | 50.0% | |
| AGGTGATAGCTGTTGGTCCA+GGG | + | chr8.2:8016665-8016684 | MS.gene24776:intron | 50.0% | |
| GAGGATAGCCATGACATCTG+AGG | - | chr8.2:8016815-8016834 | None:intergenic | 50.0% | |
| GCAGAAGAGAAAACTCAGGG+TGG | + | chr8.2:8015659-8015678 | MS.gene24776:CDS | 50.0% | |
| GCCAATGGATGGCTTATCCT+TGG | - | chr8.2:8016244-8016263 | None:intergenic | 50.0% | |
| GCCACTAGGTGATAGAGTAC+TGG | + | chr8.2:8015622-8015641 | MS.gene24776:CDS | 50.0% | |
| GCTCAATCAAAGCCTCAAGG+GGG | + | chr8.2:8015701-8015720 | MS.gene24776:CDS | 50.0% | |
| GCTGAGGAAAAAACTGCTGG+TGG | + | chr8.2:8016198-8016217 | MS.gene24776:CDS | 50.0% | |
| GGATAAGCCATCCATTGGCA+CGG | + | chr8.2:8016245-8016264 | MS.gene24776:CDS | 50.0% | |
| GGGCAGATCATCAAGACAAC+TGG | - | chr8.2:8016069-8016088 | None:intergenic | 50.0% | |
| TACCTTGGGGGTAACAACAG+TGG | - | chr8.2:8014911-8014930 | None:intergenic | 50.0% | |
| TTGGAGACGGGAAGACAGTT+GGG | + | chr8.2:8015738-8015757 | MS.gene24776:CDS | 50.0% | |
| ! | AGGTAGTTGCTGTTGGAGAC+GGG | + | chr8.2:8015726-8015745 | MS.gene24776:CDS | 50.0% |
| ! | GAGGTAGTTGCTGTTGGAGA+CGG | + | chr8.2:8015725-8015744 | MS.gene24776:CDS | 50.0% |
| !! | TGCTGGTGGTTTGTTGCTCA+CGG | + | chr8.2:8016212-8016231 | MS.gene24776:CDS | 50.0% |
| ACTAAAGCTCCCGCATACGC+GGG | + | chr8.2:8015336-8015355 | MS.gene24776:intron | 55.0% | |
| ATCAAAGCCTCAAGGGGGTG+AGG | + | chr8.2:8015706-8015725 | MS.gene24776:CDS | 55.0% | |
| CACTAAAGCTCCCGCATACG+CGG | + | chr8.2:8015335-8015354 | MS.gene24776:intron | 55.0% | |
| CAGGTGATAGCTGTTGGTCC+AGG | + | chr8.2:8016664-8016683 | MS.gene24776:intron | 55.0% | |
| CTGTTGCCTTCGTCATCCAC+AGG | - | chr8.2:8016691-8016710 | None:intergenic | 55.0% | |
| CTTGGGGGTAACAACAGTGG+CGG | - | chr8.2:8014908-8014927 | None:intergenic | 55.0% | |
| GTTGCTCACGGAAGCAACCA+AGG | + | chr8.2:8016224-8016243 | MS.gene24776:CDS | 55.0% | |
| GTTGGAGACGGGAAGACAGT+TGG | + | chr8.2:8015737-8015756 | MS.gene24776:CDS | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr8.2:8015332-8015351 | None:intergenic | 55.0% |
| CGCCACTGTTGTTACCCCCA+AGG | + | chr8.2:8014906-8014925 | MS.gene24776:CDS | 60.0% | |
| CTAAAGCTCCCGCATACGCG+GGG | + | chr8.2:8015337-8015356 | MS.gene24776:intron | 60.0% | |
| GCAACTACCTCACCCCCTTG+AGG | - | chr8.2:8015716-8015735 | None:intergenic | 60.0% | |
| GCTGCAGGTTGCAGAAGCTG+AGG | + | chr8.2:8016182-8016201 | MS.gene24776:intron | 60.0% | |
| GGGGGTGAGGTAGTTGCTGT+TGG | + | chr8.2:8015719-8015738 | MS.gene24776:CDS | 60.0% | |
| ! | AAATGGTGGGACCCCCTTCC+CGG | - | chr8.2:8015364-8015383 | None:intergenic | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr8.2:8015331-8015350 | None:intergenic | 60.0% |
| AGCTGTTGGTCCAGGGCCTG+TGG | + | chr8.2:8016672-8016691 | MS.gene24776:CDS | 65.0% | |
| CCAGGGCCTGTGGATGACGA+AGG | + | chr8.2:8016682-8016701 | MS.gene24776:CDS | 65.0% | |
| CCTTCGTCATCCACAGGCCC+TGG | - | chr8.2:8016685-8016704 | None:intergenic | 65.0% | |
| ATACGCGGGGTCCGGGAAGG+GGG | + | chr8.2:8015350-8015369 | MS.gene24776:intron | 70.0% | |
| CATACGCGGGGTCCGGGAAG+GGG | + | chr8.2:8015349-8015368 | MS.gene24776:intron | 70.0% | |
| CTTCCCGGACCCCGCGTATG+CGG | - | chr8.2:8015349-8015368 | None:intergenic | 70.0% | |
| GCATACGCGGGGTCCGGGAA+GGG | + | chr8.2:8015348-8015367 | MS.gene24776:intron | 70.0% | |
| TTCCCGGACCCCGCGTATGC+GGG | - | chr8.2:8015348-8015367 | None:intergenic | 70.0% | |
| CGCATACGCGGGGTCCGGGA+AGG | + | chr8.2:8015347-8015366 | MS.gene24776:intron | 75.0% | |
| CTCCCGCATACGCGGGGTCC+GGG | + | chr8.2:8015343-8015362 | MS.gene24776:intron | 75.0% | |
| GCTCCCGCATACGCGGGGTC+CGG | + | chr8.2:8015342-8015361 | MS.gene24776:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 8014754 | 8016840 | 8014754 | ID=MS.gene24776 |
| chr8.2 | mRNA | 8014754 | 8016840 | 8014754 | ID=MS.gene24776.t1;Parent=MS.gene24776 |
| chr8.2 | exon | 8014754 | 8014927 | 8014754 | ID=MS.gene24776.t1.exon1;Parent=MS.gene24776.t1 |
| chr8.2 | CDS | 8014754 | 8014927 | 8014754 | ID=cds.MS.gene24776.t1;Parent=MS.gene24776.t1 |
| chr8.2 | exon | 8015608 | 8015787 | 8015608 | ID=MS.gene24776.t1.exon2;Parent=MS.gene24776.t1 |
| chr8.2 | CDS | 8015608 | 8015787 | 8015608 | ID=cds.MS.gene24776.t1;Parent=MS.gene24776.t1 |
| chr8.2 | exon | 8015873 | 8016028 | 8015873 | ID=MS.gene24776.t1.exon3;Parent=MS.gene24776.t1 |
| chr8.2 | CDS | 8015873 | 8016028 | 8015873 | ID=cds.MS.gene24776.t1;Parent=MS.gene24776.t1 |
| chr8.2 | exon | 8016189 | 8016266 | 8016189 | ID=MS.gene24776.t1.exon4;Parent=MS.gene24776.t1 |
| chr8.2 | CDS | 8016189 | 8016266 | 8016189 | ID=cds.MS.gene24776.t1;Parent=MS.gene24776.t1 |
| chr8.2 | exon | 8016667 | 8016840 | 8016667 | ID=MS.gene24776.t1.exon5;Parent=MS.gene24776.t1 |
| chr8.2 | CDS | 8016667 | 8016840 | 8016667 | ID=cds.MS.gene24776.t1;Parent=MS.gene24776.t1 |
| Gene Sequence |
| Protein sequence |
