Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25661.t1 | XP_003609971.1 | 86.2 | 253 | 19 | 1 | 1 | 237 | 1 | 253 | 8.70E-108 | 399.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25661.t1 | O65282 | 67.5 | 255 | 63 | 3 | 1 | 237 | 1 | 253 | 2.0e-84 | 313.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25661.t1 | G7JS70 | 86.2 | 253 | 19 | 1 | 1 | 237 | 1 | 253 | 6.3e-108 | 399.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene25661 | 0.834478 | 2.93E-56 | -1.69E-46 |
| MS.gene050099 | MS.gene25661 | 0.874562 | 6.13E-68 | -1.69E-46 |
| MS.gene05101 | MS.gene25661 | 0.823966 | 1.04E-53 | -1.69E-46 |
| MS.gene051471 | MS.gene25661 | 0.841167 | 5.60E-58 | -1.69E-46 |
| MS.gene051662 | MS.gene25661 | 0.840143 | 1.04E-57 | -1.69E-46 |
| MS.gene051663 | MS.gene25661 | 0.827305 | 1.68E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene25661 | 0.80886 | 2.52E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene25661 | 0.825712 | 4.04E-54 | -1.69E-46 |
| MS.gene053557 | MS.gene25661 | 0.800006 | 1.76E-48 | -1.69E-46 |
| MS.gene055277 | MS.gene25661 | 0.813694 | 2.25E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene25661 | 0.832719 | 8.05E-56 | -1.69E-46 |
| MS.gene055428 | MS.gene25661 | 0.804904 | 1.73E-49 | -1.69E-46 |
| MS.gene055712 | MS.gene25661 | 0.803147 | 4.01E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene25661 | 0.800525 | 1.38E-48 | -1.69E-46 |
| MS.gene057439 | MS.gene25661 | 0.852074 | 5.86E-61 | -1.69E-46 |
| MS.gene058845 | MS.gene25661 | 0.820061 | 8.37E-53 | -1.69E-46 |
| MS.gene059228 | MS.gene25661 | 0.813952 | 1.97E-51 | -1.69E-46 |
| MS.gene059326 | MS.gene25661 | 0.846635 | 1.92E-59 | -1.69E-46 |
| MS.gene059518 | MS.gene25661 | 0.823595 | 1.27E-53 | -1.69E-46 |
| MS.gene059894 | MS.gene25661 | 0.80821 | 3.46E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene25661 | 0.827534 | 1.48E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene25661 | 0.800029 | 1.75E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39354 | MS.gene25661 | PPI |
| MS.gene24509 | MS.gene25661 | PPI |
| MS.gene022688 | MS.gene25661 | PPI |
| MS.gene051663 | MS.gene25661 | PPI |
| MS.gene24508 | MS.gene25661 | PPI |
| MS.gene25661 | MS.gene00537 | PPI |
| MS.gene25661 | MS.gene00538 | PPI |
| MS.gene66498 | MS.gene25661 | PPI |
| MS.gene66497 | MS.gene25661 | PPI |
| MS.gene39671 | MS.gene25661 | PPI |
| MS.gene051662 | MS.gene25661 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25661.t1 | MTR_4g124910 | 88.933 | 253 | 12 | 1 | 1 | 237 | 1 | 253 | 3.21e-158 | 439 |
| MS.gene25661.t1 | MTR_2g043230 | 71.260 | 254 | 56 | 2 | 1 | 237 | 1 | 254 | 2.43e-127 | 360 |
| MS.gene25661.t1 | MTR_3g110030 | 37.895 | 95 | 57 | 2 | 142 | 236 | 3 | 95 | 8.68e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25661.t1 | AT5G20720 | 70.196 | 255 | 56 | 3 | 1 | 237 | 1 | 253 | 9.73e-121 | 344 |
| MS.gene25661.t1 | AT5G20720 | 70.196 | 255 | 56 | 3 | 1 | 237 | 1 | 253 | 9.73e-121 | 344 |
| MS.gene25661.t1 | AT5G20720 | 70.196 | 255 | 56 | 3 | 1 | 237 | 1 | 253 | 9.73e-121 | 344 |
| MS.gene25661.t1 | AT5G20720 | 70.196 | 255 | 56 | 3 | 1 | 237 | 1 | 253 | 9.73e-121 | 344 |
Find 61 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTCATTCCCTGCATATT+TGG | 0.259970 | 8.2:-7990051 | None:intergenic |
| AACTGTATTCCCGGGTGAAA+TGG | 0.321202 | 8.2:-7990021 | None:intergenic |
| CCTCGTAACAATGCTAGAAT+TGG | 0.335567 | 8.2:+7988142 | MS.gene25661:CDS |
| TTCCCGGGTGAAATGGATAA+TGG | 0.363835 | 8.2:-7990014 | None:intergenic |
| TTTAAGATCTTTGACCTCTT+CGG | 0.402758 | 8.2:-7989279 | None:intergenic |
| AGGAACCTTTCTTCCTTTGA+AGG | 0.413360 | 8.2:+7988094 | MS.gene25661:CDS |
| GGAGTACAAAACTGTATTCC+CGG | 0.420138 | 8.2:-7990030 | None:intergenic |
| TATCAAGACTCTGTCATTCA+AGG | 0.421253 | 8.2:-7989303 | None:intergenic |
| CCTTCGTCATCCACAGGCCC+TGG | 0.444066 | 8.2:-7989981 | None:intergenic |
| GGCTTTGATTGAGCAGTTGA+TGG | 0.449739 | 8.2:-7988992 | None:intergenic |
| CTGTTGCCTTCGTCATCCAC+AGG | 0.452383 | 8.2:-7989987 | None:intergenic |
| CAGGTGATAGCTGTTGGTCC+AGG | 0.460455 | 8.2:+7989963 | MS.gene25661:intron |
| GAATGACAGAGTCTTGATAA+AGG | 0.473936 | 8.2:+7989307 | MS.gene25661:CDS |
| TTGGAGACGGGAAGACAGTT+GGG | 0.483437 | 8.2:+7989038 | MS.gene25661:CDS |
| GCAATCCTTCAAAGGAAGAA+AGG | 0.496887 | 8.2:-7988099 | None:intergenic |
| GCCAATGGATGGCTTATCCT+TGG | 0.505865 | 8.2:-7989540 | None:intergenic |
| AATGACTTCAAAGGCAAAGA+TGG | 0.508584 | 8.2:+7990065 | MS.gene25661:CDS |
| GAGGTAGTTGCTGTTGGAGA+CGG | 0.521962 | 8.2:+7989025 | MS.gene25661:CDS |
| GTTGGAGACGGGAAGACAGT+TGG | 0.523055 | 8.2:+7989037 | MS.gene25661:CDS |
| TGCTGGTGGTTTGTTGCTCA+CGG | 0.524264 | 8.2:+7989511 | MS.gene25661:CDS |
| ATCAAGACTCTGTCATTCAA+GGG | 0.529761 | 8.2:-7989302 | None:intergenic |
| CTGCTCAATCAAAGCCTCAA+GGG | 0.533192 | 8.2:+7988999 | MS.gene25661:CDS |
| AGGTAGTTGCTGTTGGAGAC+GGG | 0.539082 | 8.2:+7989026 | MS.gene25661:CDS |
| AAGCTTACCGTGCCAATGGA+TGG | 0.542126 | 8.2:-7989551 | None:intergenic |
| AGAAAAGCTTACCGTGCCAA+TGG | 0.548046 | 8.2:-7989555 | None:intergenic |
| GGAACTGAAGTGGAGTTCAA+TGG | 0.549387 | 8.2:+7989206 | MS.gene25661:CDS |
| AGCTGTTGGTCCAGGGCCTG+TGG | 0.552111 | 8.2:+7989971 | MS.gene25661:CDS |
| GGAAGTTCGCAATCCTTCAA+AGG | 0.561777 | 8.2:-7988107 | None:intergenic |
| GCGGCTTTAACAACAATAGA+CGG | 0.565089 | 8.2:-7988187 | None:intergenic |
| TTCAAAACATCTTATACTGA+AGG | 0.568271 | 8.2:+7989229 | MS.gene25661:CDS |
| ACCAAGGATAAGCCATCCAT+TGG | 0.568643 | 8.2:+7989539 | MS.gene25661:CDS |
| TATGCAGGGAATGACTTCAA+AGG | 0.569312 | 8.2:+7990056 | MS.gene25661:CDS |
| TTTGAGAGCCTCAGATGTCA+TGG | 0.571249 | 8.2:+7990103 | MS.gene25661:CDS |
| GAGTACAAAACTGTATTCCC+GGG | 0.572521 | 8.2:-7990029 | None:intergenic |
| CTGAAGGATGATGACATCGT+TGG | 0.572824 | 8.2:+7989245 | MS.gene25661:CDS |
| TGCTCAATCAAAGCCTCAAG+GGG | 0.578517 | 8.2:+7989000 | MS.gene25661:CDS |
| AGGTGATAGCTGTTGGTCCA+GGG | 0.579593 | 8.2:+7989964 | MS.gene25661:intron |
| AAAGTATGCAGGAACTGAAG+TGG | 0.581171 | 8.2:+7989196 | MS.gene25661:CDS |
| ACTGCTCAATCAAAGCCTCA+AGG | 0.582194 | 8.2:+7988998 | MS.gene25661:CDS |
| GTTGTGTACTCAAAGTATGC+AGG | 0.590902 | 8.2:+7989185 | MS.gene25661:CDS |
| AAACCATTATCCATTTCACC+CGG | 0.592297 | 8.2:+7990011 | MS.gene25661:CDS |
| CGGCTTTAACAACAATAGAC+GGG | 0.595648 | 8.2:-7988186 | None:intergenic |
| GGATGCAGAAGAGAAAACTC+AGG | 0.597980 | 8.2:+7988955 | MS.gene25661:intron |
| CAAAGTGGACATTAGTGTGA+AGG | 0.607471 | 8.2:+7989066 | MS.gene25661:CDS |
| GAATTGGTATTCTTACACAA+AGG | 0.614844 | 8.2:+7988158 | MS.gene25661:CDS |
| CCAGGGCCTGTGGATGACGA+AGG | 0.620963 | 8.2:+7989981 | MS.gene25661:CDS |
| AAAATAGCCAAAATTAAGAG+AGG | 0.622578 | 8.2:-7990130 | None:intergenic |
| GTTGCTCACGGAAGCAACCA+AGG | 0.626344 | 8.2:+7989523 | MS.gene25661:CDS |
| GAGGATAGCCATGACATCTG+AGG | 0.634831 | 8.2:-7990111 | None:intergenic |
| CCAATTCTAGCATTGTTACG+AGG | 0.641555 | 8.2:-7988142 | None:intergenic |
| AACCATTATCCATTTCACCC+GGG | 0.641591 | 8.2:+7990012 | MS.gene25661:CDS |
| GTTACGAGGAAAATGAATTG+CGG | 0.642882 | 8.2:-7988128 | None:intergenic |
| GGATAAGCCATCCATTGGCA+CGG | 0.647992 | 8.2:+7989544 | MS.gene25661:CDS |
| CTGCTTCATCGATTTCTACG+AGG | 0.656045 | 8.2:+7988074 | MS.gene25661:CDS |
| TGGTATTCTTGAAACCGAAG+AGG | 0.662324 | 8.2:+7989265 | MS.gene25661:CDS |
| GCTGCAGGTTGCAGAAGCTG+AGG | 0.680718 | 8.2:+7989481 | MS.gene25661:intron |
| GATGCAGAAGAGAAAACTCA+GGG | 0.684794 | 8.2:+7988956 | MS.gene25661:CDS |
| ATGTAACAGGTGATAGCTGT+TGG | 0.691284 | 8.2:+7989957 | MS.gene25661:intron |
| GACAGTTGGGAAGAACAAAG+TGG | 0.692016 | 8.2:+7989051 | MS.gene25661:CDS |
| GCAGAAGAGAAAACTCAGGG+TGG | 0.728959 | 8.2:+7988959 | MS.gene25661:CDS |
| GCTCAATCAAAGCCTCAAGG+GGG | 0.730531 | 8.2:+7989001 | MS.gene25661:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAATAATACCT+TGG | - | chr8.2:7988227-7988246 | None:intergenic | 10.0% |
| !! | AAAAATAAAAATAATACCTT+GGG | - | chr8.2:7988226-7988245 | None:intergenic | 10.0% |
| !!! | AAGGTATTATTTTTATTTTT+TGG | + | chr8.2:7988226-7988245 | MS.gene25661:intron | 10.0% |
| !!! | AGGTATTATTTTTATTTTTT+GGG | + | chr8.2:7988227-7988246 | MS.gene25661:intron | 10.0% |
| !!! | TTTTCAAAAAATTAAAACAA+TGG | + | chr8.2:7989694-7989713 | MS.gene25661:intron | 10.0% |
| !! | AAAATAAAAATAATACCTTG+GGG | - | chr8.2:7988225-7988244 | None:intergenic | 15.0% |
| !! | CGAAAAATATTCATAAATAT+TGG | - | chr8.2:7988704-7988723 | None:intergenic | 15.0% |
| !! | AAATAAAAATAATACCTTGG+GGG | - | chr8.2:7988224-7988243 | None:intergenic | 20.0% |
| !! | AAGTATACTGTTTCAAAAAA+AGG | - | chr8.2:7989586-7989605 | None:intergenic | 20.0% |
| !! | ACAAGATGAAATTACTAATA+AGG | - | chr8.2:7988887-7988906 | None:intergenic | 20.0% |
| !! | CAAAAAATTAAAACAATGGA+TGG | + | chr8.2:7989698-7989717 | MS.gene25661:intron | 20.0% |
| !! | GAAAAATATTCAAAAATGGT+GGG | - | chr8.2:7988678-7988697 | None:intergenic | 20.0% |
| !! | GGTTAAGACAAATAATTAAA+TGG | - | chr8.2:7989389-7989408 | None:intergenic | 20.0% |
| !! | GTCTGAAAAATATTCAAAAA+TGG | - | chr8.2:7988682-7988701 | None:intergenic | 20.0% |
| !! | TGAAAAATATTCAAAAATGG+TGG | - | chr8.2:7988679-7988698 | None:intergenic | 20.0% |
| !! | TTCAGACCAATAAAAAAAAA+GGG | + | chr8.2:7988603-7988622 | MS.gene25661:intron | 20.0% |
| !! | TTTCAGACCAATAAAAAAAA+AGG | + | chr8.2:7988602-7988621 | MS.gene25661:intron | 20.0% |
| !!! | TACATTTTCTCTTATACTAA+GGG | - | chr8.2:7988495-7988514 | None:intergenic | 20.0% |
| !!! | TATTTTTATTTTTTGGGTCA+TGG | + | chr8.2:7988233-7988252 | MS.gene25661:intron | 20.0% |
| ! | TAACACCTTAATGCAAAATA+TGG | - | chr8.2:7989410-7989429 | None:intergenic | 25.0% |
| ! | TGTAATGTATTTCTCTTTAC+AGG | + | chr8.2:7989151-7989170 | MS.gene25661:intron | 25.0% |
| ! | TTCAAAACATCTTATACTGA+AGG | + | chr8.2:7989229-7989248 | MS.gene25661:CDS | 25.0% |
| !! | ACATTTTCTCTTATACTAAG+GGG | - | chr8.2:7988494-7988513 | None:intergenic | 25.0% |
| !! | CTTAACCATATTTTGCATTA+AGG | + | chr8.2:7989402-7989421 | MS.gene25661:intron | 25.0% |
| !! | GTACATTTTCTCTTATACTA+AGG | - | chr8.2:7988496-7988515 | None:intergenic | 25.0% |
| !! | TTTATTTATTGCTTTAGCTC+AGG | + | chr8.2:7989840-7989859 | MS.gene25661:intron | 25.0% |
| AAACACTAGAAATAATCCCA+TGG | - | chr8.2:7988829-7988848 | None:intergenic | 30.0% | |
| AACACTAGAAATAATCCCAT+GGG | - | chr8.2:7988828-7988847 | None:intergenic | 30.0% | |
| AATAAAAAAAAAGGGCAACC+CGG | + | chr8.2:7988611-7988630 | MS.gene25661:intron | 30.0% | |
| AATTAAAACAATGGATGGTC+TGG | + | chr8.2:7989703-7989722 | MS.gene25661:intron | 30.0% | |
| AGAATTGCAAGAATGTGATT+TGG | + | chr8.2:7989667-7989686 | MS.gene25661:intron | 30.0% | |
| CCAAAATAAAAGAAAGACCA+AGG | - | chr8.2:7989126-7989145 | None:intergenic | 30.0% | |
| GAATGGTTATTTACATACCT+AGG | - | chr8.2:7989925-7989944 | None:intergenic | 30.0% | |
| GAATTGCAAGAATGTGATTT+GGG | + | chr8.2:7989668-7989687 | MS.gene25661:intron | 30.0% | |
| GAATTGGTATTCTTACACAA+AGG | + | chr8.2:7988158-7988177 | MS.gene25661:CDS | 30.0% | |
| GCAATGTTATATCGTATGAA+GGG | + | chr8.2:7989635-7989654 | MS.gene25661:intron | 30.0% | |
| GTTGTGTTTATAAGCTATCT+TGG | + | chr8.2:7988346-7988365 | MS.gene25661:intron | 30.0% | |
| TTGAAAGAGCTTATAGCTTA+TGG | - | chr8.2:7988413-7988432 | None:intergenic | 30.0% | |
| ! | AATAACCATTCTACTCCTTT+TGG | + | chr8.2:7989934-7989953 | MS.gene25661:intron | 30.0% |
| ! | CATTAAGGTGTTACGTTTAA+AGG | + | chr8.2:7989417-7989436 | MS.gene25661:intron | 30.0% |
| ! | TGGATTTTCTTCATTATCTG+CGG | + | chr8.2:7988253-7988272 | MS.gene25661:intron | 30.0% |
| ! | TTTAAGATCTTTGACCTCTT+CGG | - | chr8.2:7989282-7989301 | None:intergenic | 30.0% |
| ! | TTTTGTACTCCAAATATGCA+GGG | + | chr8.2:7990042-7990061 | MS.gene25661:CDS | 30.0% |
| !! | CCTTGGTCTTTCTTTTATTT+TGG | + | chr8.2:7989123-7989142 | MS.gene25661:intron | 30.0% |
| !! | TAGAGTACTGGTAAAAATCA+AGG | + | chr8.2:7988934-7988953 | MS.gene25661:intron | 30.0% |
| !!! | TTGTTTTGATCGAGTAGTTT+TGG | + | chr8.2:7989898-7989917 | MS.gene25661:intron | 30.0% |
| AAACCATTATCCATTTCACC+CGG | + | chr8.2:7990011-7990030 | MS.gene25661:CDS | 35.0% | |
| AAAGAAAGACCAAGGCTTAA+AGG | - | chr8.2:7989118-7989137 | None:intergenic | 35.0% | |
| AACACATTCTACCGTCTTAA+GGG | - | chr8.2:7989795-7989814 | None:intergenic | 35.0% | |
| AATGACTTCAAAGGCAAAGA+TGG | + | chr8.2:7990065-7990084 | MS.gene25661:CDS | 35.0% | |
| ACCTGCAGCATCATAATTAA+AGG | - | chr8.2:7989470-7989489 | None:intergenic | 35.0% | |
| ACTAGCATTATCCCTTAAGA+CGG | + | chr8.2:7989781-7989800 | MS.gene25661:intron | 35.0% | |
| ATCAAGACTCTGTCATTCAA+GGG | - | chr8.2:7989305-7989324 | None:intergenic | 35.0% | |
| ATCTCATAATGCACTTGAGT+GGG | - | chr8.2:7988439-7988458 | None:intergenic | 35.0% | |
| ATGTATTTCTCTTTACAGGC+AGG | + | chr8.2:7989155-7989174 | MS.gene25661:intron | 35.0% | |
| GAATGACAGAGTCTTGATAA+AGG | + | chr8.2:7989307-7989326 | MS.gene25661:CDS | 35.0% | |
| GGCAATGTTATATCGTATGA+AGG | + | chr8.2:7989634-7989653 | MS.gene25661:intron | 35.0% | |
| GTTACGAGGAAAATGAATTG+CGG | - | chr8.2:7988131-7988150 | None:intergenic | 35.0% | |
| TAAAGGATTCCATAAGCTAG+TGG | - | chr8.2:7989101-7989120 | None:intergenic | 35.0% | |
| TACATCCAAAAGGAGTAGAA+TGG | - | chr8.2:7989942-7989961 | None:intergenic | 35.0% | |
| TATCAAGACTCTGTCATTCA+AGG | - | chr8.2:7989306-7989325 | None:intergenic | 35.0% | |
| TATCACCTGTTACATCCAAA+AGG | - | chr8.2:7989952-7989971 | None:intergenic | 35.0% | |
| TATCTCATAATGCACTTGAG+TGG | - | chr8.2:7988440-7988459 | None:intergenic | 35.0% | |
| TGTTATATCGTATGAAGGGA+AGG | + | chr8.2:7989639-7989658 | MS.gene25661:intron | 35.0% | |
| TTATGGAATCCTTTAAGCCT+TGG | + | chr8.2:7989106-7989125 | MS.gene25661:intron | 35.0% | |
| ! | AACACCACTCTTCTAAAAGA+GGG | + | chr8.2:7989613-7989632 | MS.gene25661:intron | 35.0% |
| ! | GTTTTGTACTCCAAATATGC+AGG | + | chr8.2:7990041-7990060 | MS.gene25661:CDS | 35.0% |
| ! | TAACACCACTCTTCTAAAAG+AGG | + | chr8.2:7989612-7989631 | MS.gene25661:intron | 35.0% |
| !!! | GGGTTGCCCTTTTTTTTTAT+TGG | - | chr8.2:7988612-7988631 | None:intergenic | 35.0% |
| AAAGTATGCAGGAACTGAAG+TGG | + | chr8.2:7989196-7989215 | MS.gene25661:CDS | 40.0% | |
| AACCATTATCCATTTCACCC+GGG | + | chr8.2:7990012-7990031 | MS.gene25661:CDS | 40.0% | |
| ACAGAGTCTTGATAAAGGTG+TGG | + | chr8.2:7989312-7989331 | MS.gene25661:intron | 40.0% | |
| AGAAATAATCCCATGGGACA+GGG | - | chr8.2:7988822-7988841 | None:intergenic | 40.0% | |
| AGGAACCTTTCTTCCTTTGA+AGG | + | chr8.2:7988094-7988113 | MS.gene25661:CDS | 40.0% | |
| ATGTAACAGGTGATAGCTGT+TGG | + | chr8.2:7989957-7989976 | MS.gene25661:intron | 40.0% | |
| CAAAGTGGACATTAGTGTGA+AGG | + | chr8.2:7989066-7989085 | MS.gene25661:CDS | 40.0% | |
| CAACACATTCTACCGTCTTA+AGG | - | chr8.2:7989796-7989815 | None:intergenic | 40.0% | |
| CCAATTCTAGCATTGTTACG+AGG | - | chr8.2:7988145-7988164 | None:intergenic | 40.0% | |
| CCTCGTAACAATGCTAGAAT+TGG | + | chr8.2:7988142-7988161 | MS.gene25661:CDS | 40.0% | |
| GAAGTCATTCCCTGCATATT+TGG | - | chr8.2:7990054-7990073 | None:intergenic | 40.0% | |
| GAGTACAAAACTGTATTCCC+GGG | - | chr8.2:7990032-7990051 | None:intergenic | 40.0% | |
| GATGCAGAAGAGAAAACTCA+GGG | + | chr8.2:7988956-7988975 | MS.gene25661:CDS | 40.0% | |
| GCAATCCTTCAAAGGAAGAA+AGG | - | chr8.2:7988102-7988121 | None:intergenic | 40.0% | |
| GCCTTTAATTATGATGCTGC+AGG | + | chr8.2:7989466-7989485 | MS.gene25661:intron | 40.0% | |
| GGAGTACAAAACTGTATTCC+CGG | - | chr8.2:7990033-7990052 | None:intergenic | 40.0% | |
| GTTGTGTACTCAAAGTATGC+AGG | + | chr8.2:7989185-7989204 | MS.gene25661:CDS | 40.0% | |
| TAGAAATAATCCCATGGGAC+AGG | - | chr8.2:7988823-7988842 | None:intergenic | 40.0% | |
| TATGCAGGGAATGACTTCAA+AGG | + | chr8.2:7990056-7990075 | MS.gene25661:CDS | 40.0% | |
| TGGTATTCTTGAAACCGAAG+AGG | + | chr8.2:7989265-7989284 | MS.gene25661:CDS | 40.0% | |
| ! | ATTGCTTTAGCTCAGGTCAT+TGG | + | chr8.2:7989847-7989866 | MS.gene25661:intron | 40.0% |
| ! | CGGCTTTAACAACAATAGAC+GGG | - | chr8.2:7988189-7988208 | None:intergenic | 40.0% |
| ! | CTACTCCTTTTGGATGTAAC+AGG | + | chr8.2:7989944-7989963 | MS.gene25661:intron | 40.0% |
| ! | GCGGCTTTAACAACAATAGA+CGG | - | chr8.2:7988190-7988209 | None:intergenic | 40.0% |
| ! | TTTAGCTCAGGTCATTGGTT+TGG | + | chr8.2:7989852-7989871 | MS.gene25661:intron | 40.0% |
| !! | ATTGCCCTCTTTTAGAAGAG+TGG | - | chr8.2:7989620-7989639 | None:intergenic | 40.0% |
| AACTGTATTCCCGGGTGAAA+TGG | - | chr8.2:7990024-7990043 | None:intergenic | 45.0% | |
| ACCAAGGATAAGCCATCCAT+TGG | + | chr8.2:7989539-7989558 | MS.gene25661:CDS | 45.0% | |
| ACTGCTCAATCAAAGCCTCA+AGG | + | chr8.2:7988998-7989017 | MS.gene25661:CDS | 45.0% | |
| AGAAAAGCTTACCGTGCCAA+TGG | - | chr8.2:7989558-7989577 | None:intergenic | 45.0% | |
| AGCACTAGGTGATAGAGTAC+TGG | + | chr8.2:7988922-7988941 | MS.gene25661:intron | 45.0% | |
| ATACATAAGCCCTGTCCCAT+GGG | + | chr8.2:7988810-7988829 | MS.gene25661:intron | 45.0% | |
| CTACAGCGAGAGATCAAAGT+AGG | + | chr8.2:7988544-7988563 | MS.gene25661:intron | 45.0% | |
| CTGAAGGATGATGACATCGT+TGG | + | chr8.2:7989245-7989264 | MS.gene25661:CDS | 45.0% | |
| CTGCTCAATCAAAGCCTCAA+GGG | + | chr8.2:7988999-7989018 | MS.gene25661:CDS | 45.0% | |
| GAAGCTGAGGAAAAAACTGC+TGG | + | chr8.2:7989494-7989513 | MS.gene25661:CDS | 45.0% | |
| GACAGTTGGGAAGAACAAAG+TGG | + | chr8.2:7989051-7989070 | MS.gene25661:CDS | 45.0% | |
| GCATACAACTGTCAAGCACT+AGG | + | chr8.2:7988908-7988927 | MS.gene25661:intron | 45.0% | |
| GGAACTGAAGTGGAGTTCAA+TGG | + | chr8.2:7989206-7989225 | MS.gene25661:CDS | 45.0% | |
| GGAAGTTCGCAATCCTTCAA+AGG | - | chr8.2:7988110-7988129 | None:intergenic | 45.0% | |
| GGATGCAGAAGAGAAAACTC+AGG | + | chr8.2:7988955-7988974 | MS.gene25661:intron | 45.0% | |
| GGGATAATGCTAGTTGCTAC+AGG | - | chr8.2:7989775-7989794 | None:intergenic | 45.0% | |
| TATACATAAGCCCTGTCCCA+TGG | + | chr8.2:7988809-7988828 | MS.gene25661:intron | 45.0% | |
| TGCTCAATCAAAGCCTCAAG+GGG | + | chr8.2:7989000-7989019 | MS.gene25661:CDS | 45.0% | |
| TGGCAGATCATCAAGACAAC+TGG | - | chr8.2:7989369-7989388 | None:intergenic | 45.0% | |
| TTCCCGGGTGAAATGGATAA+TGG | - | chr8.2:7990017-7990036 | None:intergenic | 45.0% | |
| TTTGAGAGCCTCAGATGTCA+TGG | + | chr8.2:7990103-7990122 | MS.gene25661:CDS | 45.0% | |
| ! | GGCTTTGATTGAGCAGTTGA+TGG | - | chr8.2:7988995-7989014 | None:intergenic | 45.0% |
| ! | TGAGTGATGCCACTAGCTTA+TGG | + | chr8.2:7989089-7989108 | MS.gene25661:intron | 45.0% |
| !! | CTGCTTCATCGATTTCTACG+AGG | + | chr8.2:7988074-7988093 | MS.gene25661:CDS | 45.0% |
| !!! | GATCGAGTAGTTTTGGTCCT+AGG | + | chr8.2:7989905-7989924 | MS.gene25661:intron | 45.0% |
| AAGCTTACCGTGCCAATGGA+TGG | - | chr8.2:7989554-7989573 | None:intergenic | 50.0% | |
| AGGTGATAGCTGTTGGTCCA+GGG | + | chr8.2:7989964-7989983 | MS.gene25661:intron | 50.0% | |
| GAGGATAGCCATGACATCTG+AGG | - | chr8.2:7990114-7990133 | None:intergenic | 50.0% | |
| GCAGAAGAGAAAACTCAGGG+TGG | + | chr8.2:7988959-7988978 | MS.gene25661:CDS | 50.0% | |
| GCCAATGGATGGCTTATCCT+TGG | - | chr8.2:7989543-7989562 | None:intergenic | 50.0% | |
| GCTCAATCAAAGCCTCAAGG+GGG | + | chr8.2:7989001-7989020 | MS.gene25661:CDS | 50.0% | |
| GCTGAGGAAAAAACTGCTGG+TGG | + | chr8.2:7989497-7989516 | MS.gene25661:CDS | 50.0% | |
| GGATAAGCCATCCATTGGCA+CGG | + | chr8.2:7989544-7989563 | MS.gene25661:CDS | 50.0% | |
| TACCTTGGGGGTAACAACAG+TGG | - | chr8.2:7988212-7988231 | None:intergenic | 50.0% | |
| TTGGAGACGGGAAGACAGTT+GGG | + | chr8.2:7989038-7989057 | MS.gene25661:CDS | 50.0% | |
| ! | AGGTAGTTGCTGTTGGAGAC+GGG | + | chr8.2:7989026-7989045 | MS.gene25661:CDS | 50.0% |
| ! | GAGGTAGTTGCTGTTGGAGA+CGG | + | chr8.2:7989025-7989044 | MS.gene25661:CDS | 50.0% |
| !! | TGCTGGTGGTTTGTTGCTCA+CGG | + | chr8.2:7989511-7989530 | MS.gene25661:CDS | 50.0% |
| ACTAAAGCTCCCGCATACGC+GGG | + | chr8.2:7988637-7988656 | MS.gene25661:intron | 55.0% | |
| ATCAAAGCCTCAAGGGGGTG+AGG | + | chr8.2:7989006-7989025 | MS.gene25661:CDS | 55.0% | |
| CACTAAAGCTCCCGCATACG+CGG | + | chr8.2:7988636-7988655 | MS.gene25661:intron | 55.0% | |
| CAGGTGATAGCTGTTGGTCC+AGG | + | chr8.2:7989963-7989982 | MS.gene25661:intron | 55.0% | |
| CTGTTGCCTTCGTCATCCAC+AGG | - | chr8.2:7989990-7990009 | None:intergenic | 55.0% | |
| CTTGGGGGTAACAACAGTGG+CGG | - | chr8.2:7988209-7988228 | None:intergenic | 55.0% | |
| GTTGCTCACGGAAGCAACCA+AGG | + | chr8.2:7989523-7989542 | MS.gene25661:CDS | 55.0% | |
| GTTGGAGACGGGAAGACAGT+TGG | + | chr8.2:7989037-7989056 | MS.gene25661:CDS | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr8.2:7988633-7988652 | None:intergenic | 55.0% |
| CGCCACTGTTGTTACCCCCA+AGG | + | chr8.2:7988207-7988226 | MS.gene25661:CDS | 60.0% | |
| CTAAAGCTCCCGCATACGCG+GGG | + | chr8.2:7988638-7988657 | MS.gene25661:intron | 60.0% | |
| GCAACTACCTCACCCCCTTG+AGG | - | chr8.2:7989016-7989035 | None:intergenic | 60.0% | |
| GCTGCAGGTTGCAGAAGCTG+AGG | + | chr8.2:7989481-7989500 | MS.gene25661:intron | 60.0% | |
| GGGGGTGAGGTAGTTGCTGT+TGG | + | chr8.2:7989019-7989038 | MS.gene25661:CDS | 60.0% | |
| ! | AAATGGTGGGACCCCCTTCC+CGG | - | chr8.2:7988665-7988684 | None:intergenic | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr8.2:7988632-7988651 | None:intergenic | 60.0% |
| AGCTGTTGGTCCAGGGCCTG+TGG | + | chr8.2:7989971-7989990 | MS.gene25661:CDS | 65.0% | |
| CCAGGGCCTGTGGATGACGA+AGG | + | chr8.2:7989981-7990000 | MS.gene25661:CDS | 65.0% | |
| CCTTCGTCATCCACAGGCCC+TGG | - | chr8.2:7989984-7990003 | None:intergenic | 65.0% | |
| ATACGCGGGGTCCGGGAAGG+GGG | + | chr8.2:7988651-7988670 | MS.gene25661:intron | 70.0% | |
| CATACGCGGGGTCCGGGAAG+GGG | + | chr8.2:7988650-7988669 | MS.gene25661:intron | 70.0% | |
| CTTCCCGGACCCCGCGTATG+CGG | - | chr8.2:7988650-7988669 | None:intergenic | 70.0% | |
| GCATACGCGGGGTCCGGGAA+GGG | + | chr8.2:7988649-7988668 | MS.gene25661:intron | 70.0% | |
| TTCCCGGACCCCGCGTATGC+GGG | - | chr8.2:7988649-7988668 | None:intergenic | 70.0% | |
| CGCATACGCGGGGTCCGGGA+AGG | + | chr8.2:7988648-7988667 | MS.gene25661:intron | 75.0% | |
| CTCCCGCATACGCGGGGTCC+GGG | + | chr8.2:7988644-7988663 | MS.gene25661:intron | 75.0% | |
| GCTCCCGCATACGCGGGGTC+CGG | + | chr8.2:7988643-7988662 | MS.gene25661:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 7988055 | 7990139 | 7988055 | ID=MS.gene25661 |
| chr8.2 | mRNA | 7988055 | 7990139 | 7988055 | ID=MS.gene25661.t1;Parent=MS.gene25661 |
| chr8.2 | exon | 7988055 | 7988228 | 7988055 | ID=MS.gene25661.t1.exon1;Parent=MS.gene25661.t1 |
| chr8.2 | CDS | 7988055 | 7988228 | 7988055 | ID=cds.MS.gene25661.t1;Parent=MS.gene25661.t1 |
| chr8.2 | exon | 7988956 | 7989087 | 7988956 | ID=MS.gene25661.t1.exon2;Parent=MS.gene25661.t1 |
| chr8.2 | CDS | 7988956 | 7989087 | 7988956 | ID=cds.MS.gene25661.t1;Parent=MS.gene25661.t1 |
| chr8.2 | exon | 7989173 | 7989328 | 7989173 | ID=MS.gene25661.t1.exon3;Parent=MS.gene25661.t1 |
| chr8.2 | CDS | 7989173 | 7989328 | 7989173 | ID=cds.MS.gene25661.t1;Parent=MS.gene25661.t1 |
| chr8.2 | exon | 7989488 | 7989565 | 7989488 | ID=MS.gene25661.t1.exon4;Parent=MS.gene25661.t1 |
| chr8.2 | CDS | 7989488 | 7989565 | 7989488 | ID=cds.MS.gene25661.t1;Parent=MS.gene25661.t1 |
| chr8.2 | exon | 7989966 | 7990139 | 7989966 | ID=MS.gene25661.t1.exon5;Parent=MS.gene25661.t1 |
| chr8.2 | CDS | 7989966 | 7990139 | 7989966 | ID=cds.MS.gene25661.t1;Parent=MS.gene25661.t1 |
| Gene Sequence |
| Protein sequence |
